INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-3h-Rep2-GSM1689015-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 4.34665083885 s
Creating peak regions... Creating peak regions took 42.0257780552 s
Estimating background... Estimating background took 0.962995052338 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 5.11504983902 s
Creating peak regions... Creating peak regions took 38.7272770405 s
Estimating background... Estimating background took 3.38636112213 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 4.31093096733 s
Creating peak regions... Creating peak regions took 36.3796498775 s
Estimating background... Estimating background took 1.01065301895 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 4.55799484253 s
Creating peak regions... Creating peak regions took 36.7763981819 s
Estimating background... Estimating background took 3.08812689781 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 4.72012710571 s
Creating peak regions... Creating peak regions took 37.9453701973 s
Estimating background... Estimating background took 1.22730588913 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 3.9874689579 s
Creating peak regions... Creating peak regions took 31.7754540443 s
Estimating background... Estimating background took 0.926512002945 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 4.0311768055 s
Creating peak regions... Creating peak regions took 29.6209259033 s
Estimating background... Estimating background took 0.93021607399 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 3.68821001053 s
Creating peak regions... Creating peak regions took 29.0339319706 s
Estimating background... Estimating background took 1.03026199341 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 3.85361790657 s
Creating peak regions... Creating peak regions took 27.7545340061 s
Estimating background... Estimating background took 0.719609022141 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 2.60268187523 s
Creating peak regions... Creating peak regions took 19.0158410072 s
Estimating background... Estimating background took 0.715283870697 s


Processing GATA1-G1E-ER4-3h-Rep2-GSM1689015.35mers.unique.bam
Reading in data... Reading data took 9.83868694305 s
Creating peak regions... Creating peak regions took 60.3174438477 s
Estimating background...