INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-3h-Rep1-GSM1689014-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.11652684212 s Creating peak regions... Creating peak regions took 44.0591990948 s Estimating background... Estimating background took 1.03621411324 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.23644113541 s Creating peak regions... Creating peak regions took 40.0577909946 s Estimating background... Estimating background took 1.4068300724 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.10479092598 s Creating peak regions... Creating peak regions took 37.1432101727 s Estimating background... Estimating background took 3.22815489769 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.965408086777 s Creating peak regions... Creating peak regions took 37.1717078686 s Estimating background... Estimating background took 0.953829050064 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.06241893768 s Creating peak regions... Creating peak regions took 38.7995090485 s Estimating background... Estimating background took 0.838358879089 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.03096580505 s Creating peak regions... Creating peak regions took 32.4468100071 s Estimating background... Estimating background took 3.38015985489 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.789045095444 s Creating peak regions... Creating peak regions took 30.1685891151 s Estimating background... Estimating background took 0.853591918945 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.806807994843 s Creating peak regions... Creating peak regions took 29.5237841606 s Estimating background... Estimating background took 2.80688500404 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.713850021362 s Creating peak regions... Creating peak regions took 27.9539370537 s Estimating background... Estimating background took 0.749274015427 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.65969991684 s Creating peak regions... Creating peak regions took 19.1519708633 s Estimating background... Estimating background took 0.844851970673 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 2.07950901985 s Creating peak regions... Creating peak regions took 61.7517940998 s Estimating background... Estimating background took 5.64716005325 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0403699874878 s Creating peak regions... Creating peak regions took 0.147181987762 s Estimating background... Estimating background took 0.28627204895 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0444459915161 s Creating peak regions... Creating peak regions took 0.213173866272 s Estimating background... Estimating background took 0.287019014359 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0458409786224 s Creating peak regions... Creating peak regions took 0.183133840561 s Estimating background... Estimating background took 0.273170948029 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0345211029053 s Creating peak regions... Creating peak regions took 0.199638128281 s Estimating background... Estimating background took 0.280962944031 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.8783659935 s Creating peak regions... Creating peak regions took 57.1587870121 s Estimating background... Estimating background took 5.19113302231 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.74623608589 s Creating peak regions... Creating peak regions took 50.384873867 s Estimating background... Estimating background took 4.88795399666 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.28948807716 s Creating peak regions... Creating peak regions took 48.7394380569 s Estimating background... Estimating background took 4.51573300362 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0373299121857 s Creating peak regions... Creating peak regions took 0.0750200748444 s Estimating background... Estimating background took 0.273406028748 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0330500602722 s Creating peak regions... Creating peak regions took 0.0188360214233 s Estimating background... Estimating background took 0.282181024551 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.33423399925 s Creating peak regions... Creating peak regions took 48.4597861767 s Estimating background... Estimating background took 1.23761296272 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0288729667664 s Creating peak regions... Creating peak regions took 0.415540933609 s Estimating background... Estimating background took 0.29182600975 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.38832616806 s Creating peak regions... Creating peak regions took 49.4619789124 s Estimating background... Estimating background took 1.23748898506 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.68923592567 s Creating peak regions... Creating peak regions took 47.718517065 s Estimating background... Estimating background took 1.74469900131 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.2996199131 s Creating peak regions... Creating peak regions took 43.0647649765 s Estimating background... Estimating background took 1.14279079437 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 1.47429895401 s Creating peak regions... Creating peak regions took 39.034058094 s Estimating background... Estimating background took 4.0699660778 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0396680831909 s Creating peak regions... Creating peak regions took 0.0667190551758 s Estimating background... Estimating background took 0.309423923492 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0436022281647 s Creating peak regions... Creating peak regions took 0.0599091053009 s Estimating background... Estimating background took 0.3057949543 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0442938804626 s Creating peak regions... Creating peak regions took 0.035425901413 s Estimating background... Estimating background took 0.303280830383 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0439910888672 s Creating peak regions... Creating peak regions took 0.0514600276947 s Estimating background... Estimating background took 0.301425933838 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0430631637573 s Creating peak regions... Creating peak regions took 0.0504539012909 s Estimating background... Estimating background took 0.302358865738 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0445117950439 s Creating peak regions... Creating peak regions took 0.0670220851898 s Estimating background... Estimating background took 0.304248094559 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0441930294037 s Creating peak regions... Creating peak regions took 0.0296320915222 s Estimating background... Estimating background took 0.308369874954 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0440578460693 s Creating peak regions... Creating peak regions took 0.0323829650879 s Estimating background... Estimating background took 0.287863016129 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0439839363098 s Creating peak regions... Creating peak regions took 0.0448961257935 s Estimating background... Estimating background took 0.304600000381 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0441000461578 s Creating peak regions... Creating peak regions took 0.0211639404297 s Estimating background... Estimating background took 0.306612968445 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0438139438629 s Creating peak regions... Creating peak regions took 0.106650829315 s Estimating background... Estimating background took 0.286345005035 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0378518104553 s Creating peak regions... Creating peak regions took 0.0659599304199 s Estimating background... Estimating background took 0.308993816376 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0439200401306 s Creating peak regions... Creating peak regions took 0.0439820289612 s Estimating background... Estimating background took 0.30784201622 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0445659160614 s Creating peak regions... Creating peak regions took 0.0266900062561 s Estimating background... Estimating background took 0.294097185135 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0980401039124 s Creating peak regions... Creating peak regions took 0.0429241657257 s Estimating background... Estimating background took 0.348158121109 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0451798439026 s Creating peak regions... Creating peak regions took 0.0399389266968 s Estimating background... Estimating background took 0.305387973785 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0475912094116 s Creating peak regions... Creating peak regions took 0.0602850914001 s Estimating background... Estimating background took 0.342139959335 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0479350090027 s Creating peak regions... Creating peak regions took 0.0862100124359 s Estimating background... Estimating background took 0.31002497673 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0436389446259 s Creating peak regions... Creating peak regions took 0.0390110015869 s Estimating background... Estimating background took 0.304057121277 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0443329811096 s Creating peak regions... Creating peak regions took 0.0338890552521 s Estimating background... Estimating background took 0.296223163605 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0553979873657 s Creating peak regions... Creating peak regions took 0.174092054367 s Estimating background... Estimating background took 0.349025011063 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.704904794693 s Creating peak regions... Creating peak regions took 46.7324299812 s Estimating background... Estimating background took 0.406806945801 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0585119724274 s Creating peak regions... Creating peak regions took 0.219444036484 s Estimating background... Estimating background took 0.303868055344 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Reading data took 0.0374009609222 s Creating peak regions... Creating peak regions took 21.3388459682 s Estimating background... Estimating background took 0.305360078812 s Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-3h-Rep1-GSM1689014.35mers.unique.bam Reading in data...