INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-24h-Rep2-GSM1689019-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.15586519241 s
Creating peak regions... Creating peak regions took 45.3064351082 s
Estimating background... Estimating background took 0.829835891724 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.32201004028 s
Creating peak regions... Creating peak regions took 39.9619362354 s
Estimating background... Estimating background took 3.29445099831 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.02488398552 s
Creating peak regions... Creating peak regions took 38.7898938656 s
Estimating background... Estimating background took 0.913069963455 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.06383991241 s
Creating peak regions... Creating peak regions took 39.1660461426 s
Estimating background... Estimating background took 2.98603415489 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.14258003235 s
Creating peak regions... Creating peak regions took 40.4668741226 s
Estimating background... Estimating background took 1.02185297012 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 0.937781095505 s
Creating peak regions... Creating peak regions took 33.8550319672 s
Estimating background... Estimating background took 0.850209951401 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 1.17123198509 s
Creating peak regions... Creating peak regions took 31.5038361549 s
Estimating background... Estimating background took 0.750852823257 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 0.867871999741 s
Creating peak regions... Creating peak regions took 31.0884099007 s
Estimating background... Estimating background took 2.86321520805 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 0.749334096909 s
Creating peak regions... Creating peak regions took 29.1918258667 s
Estimating background... Estimating background took 0.612613916397 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 0.571837902069 s
Creating peak regions... Creating peak regions took 19.3178839684 s
Estimating background... Estimating background took 0.629643917084 s


Processing GATA1-G1E-ER4-24h-Rep2-GSM1689019.35mers.unique.bam
Reading in data... Reading data took 2.22045397758 s
Creating peak regions... Creating peak regions took 63.3571200371 s
Estimating background...