INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-24h-Rep2-GSM1689018-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.21817302704 s Creating peak regions... Creating peak regions took 44.0289587975 s Estimating background... Estimating background took 0.724170207977 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.19454312325 s Creating peak regions... Creating peak regions took 38.1432721615 s Estimating background... Estimating background took 3.59731292725 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.872786998749 s Creating peak regions... Creating peak regions took 36.833673954 s Estimating background... Estimating background took 0.709994077682 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.07617616653 s Creating peak regions... Creating peak regions took 39.3016488552 s Estimating background... Estimating background took 0.714941978455 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.02771091461 s Creating peak regions... Creating peak regions took 37.354984045 s Estimating background... Estimating background took 0.633499860764 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.957708120346 s Creating peak regions... Creating peak regions took 32.5793788433 s Estimating background... Estimating background took 3.06586384773 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.720927000046 s Creating peak regions... Creating peak regions took 30.0963618755 s Estimating background... Estimating background took 0.617398023605 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.804394006729 s Creating peak regions... Creating peak regions took 28.3435711861 s Estimating background... Estimating background took 0.722389936447 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.759705066681 s Creating peak regions... Creating peak regions took 28.2391691208 s Estimating background... Estimating background took 0.544969081879 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.637104988098 s Creating peak regions... Creating peak regions took 19.3651652336 s Estimating background... Estimating background took 2.55142498016 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.78572487831 s Creating peak regions... Creating peak regions took 61.603924036 s Estimating background... Estimating background took 5.12097907066 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0330789089203 s Creating peak regions... Creating peak regions took 0.11497092247 s Estimating background... Estimating background took 0.246303081512 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0412690639496 s Creating peak regions... Creating peak regions took 0.13319683075 s Estimating background... Estimating background took 0.252649068832 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0420379638672 s Creating peak regions... Creating peak regions took 0.10898399353 s Estimating background... Estimating background took 0.22700381279 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0316319465637 s Creating peak regions... Creating peak regions took 0.118827104568 s Estimating background... Estimating background took 0.248728990555 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.66533207893 s Creating peak regions... Creating peak regions took 55.114410162 s Estimating background... Estimating background took 4.80088496208 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.40284705162 s Creating peak regions... Creating peak regions took 50.067168951 s Estimating background... Estimating background took 1.08836293221 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.45315694809 s Creating peak regions... Creating peak regions took 49.3414349556 s Estimating background... Estimating background took 4.16311502457 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0368840694427 s Creating peak regions... Creating peak regions took 0.0760018825531 s Estimating background... Estimating background took 0.276356935501 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.19670391083 s Creating peak regions... Creating peak regions took 48.2185759544 s Estimating background... Estimating background took 0.991029024124 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0292139053345 s Creating peak regions... Creating peak regions took 0.430337905884 s Estimating background... Estimating background took 0.27842092514 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.27653288841 s Creating peak regions... Creating peak regions took 49.0717680454 s Estimating background... Estimating background took 0.908899784088 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.62549090385 s Creating peak regions... Creating peak regions took 45.7460160255 s Estimating background... Estimating background took 4.28653502464 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.949178934097 s Creating peak regions... Creating peak regions took 39.9990711212 s Estimating background... Estimating background took 0.888170957565 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 1.30876302719 s Creating peak regions... Creating peak regions took 40.9203901291 s Estimating background... Estimating background took 0.984320878983 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0810990333557 s Creating peak regions... Creating peak regions took 0.0800201892853 s Estimating background... Estimating background took 0.269477128983 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0385551452637 s Creating peak regions... Creating peak regions took 0.0540728569031 s Estimating background... Estimating background took 0.271543979645 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0305631160736 s Creating peak regions... Creating peak regions took 0.0444660186768 s Estimating background... Estimating background took 0.268054008484 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0367481708527 s Creating peak regions... Creating peak regions took 0.057569026947 s Estimating background... Estimating background took 0.272186994553 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0380120277405 s Creating peak regions... Creating peak regions took 0.0626170635223 s Estimating background... Estimating background took 0.270081996918 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0379481315613 s Creating peak regions... Creating peak regions took 0.0280041694641 s Estimating background... Estimating background took 0.270254135132 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.031327009201 s Creating peak regions... Creating peak regions took 0.0289490222931 s Estimating background... Estimating background took 0.270114898682 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0367250442505 s Creating peak regions... Creating peak regions took 0.0339140892029 s Estimating background... Estimating background took 0.267103910446 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0371608734131 s Creating peak regions... Creating peak regions took 0.100095033646 s Estimating background... Estimating background took 0.272830963135 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0382981300354 s Creating peak regions... Creating peak regions took 0.0369291305542 s Estimating background... Estimating background took 0.255117893219 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0340478420258 s Creating peak regions... Creating peak regions took 0.0734069347382 s Estimating background... Estimating background took 0.273790836334 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0370230674744 s Creating peak regions... Creating peak regions took 0.0467088222504 s Estimating background... Estimating background took 0.273926973343 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0381619930267 s Creating peak regions... Creating peak regions took 0.0346558094025 s Estimating background... Estimating background took 0.275969028473 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0641570091248 s Creating peak regions... Creating peak regions took 0.0452601909637 s Estimating background... Estimating background took 0.3038418293 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0387489795685 s Creating peak regions... Creating peak regions took 0.0408658981323 s Estimating background... Estimating background took 0.272264003754 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0422310829163 s Creating peak regions... Creating peak regions took 0.0550630092621 s Estimating background... Estimating background took 0.272017002106 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0391728878021 s Creating peak regions... Creating peak regions took 0.0794849395752 s Estimating background... Estimating background took 0.271324872971 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0378401279449 s Creating peak regions... Creating peak regions took 0.0352580547333 s Estimating background... Estimating background took 0.251941919327 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0373060703278 s Creating peak regions... Creating peak regions took 0.03382396698 s Estimating background... Estimating background took 0.268426895142 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0489468574524 s Creating peak regions... Creating peak regions took 0.188197135925 s Estimating background... Estimating background took 0.312618970871 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.613030195236 s Creating peak regions... Creating peak regions took 49.0985360146 s Estimating background... Estimating background took 0.434531927109 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0652141571045 s Creating peak regions... Creating peak regions took 0.349415063858 s Estimating background... Estimating background took 0.272309064865 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Reading data took 0.0381050109863 s Creating peak regions... Creating peak regions took 22.0022921562 s Estimating background... Estimating background took 0.271267175674 s Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep2-GSM1689018.35mers.unique.bam Reading in data...