INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-24h-Rep1-GSM1689017-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.5146920681 s Creating peak regions... Creating peak regions took 41.0807080269 s Estimating background... Estimating background took 0.33284497261 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 4.37071990967 s Creating peak regions... Creating peak regions took 36.9200389385 s Estimating background... Estimating background took 0.400904893875 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.57704496384 s Creating peak regions... Creating peak regions took 35.785022974 s Estimating background... Estimating background took 0.359177112579 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.7751121521 s Creating peak regions... Creating peak regions took 36.9967567921 s Estimating background... Estimating background took 0.325972080231 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.71914815903 s Creating peak regions... Creating peak regions took 38.6694061756 s Estimating background... Estimating background took 0.338500022888 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.26790690422 s Creating peak regions... Creating peak regions took 32.0036261082 s Estimating background... Estimating background took 0.303616046906 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.13795280457 s Creating peak regions... Creating peak regions took 30.2478070259 s Estimating background... Estimating background took 0.314916133881 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 3.24175405502 s Creating peak regions... Creating peak regions took 29.0879440308 s Estimating background... Estimating background took 0.311735868454 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 2.97484898567 s Creating peak regions... Creating peak regions took 27.9438929558 s Estimating background... Estimating background took 0.316406965256 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 2.4224998951 s Creating peak regions... Creating peak regions took 19.0499069691 s Estimating background... Estimating background took 0.294610023499 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 7.76588106155 s Creating peak regions... Creating peak regions took 60.9351670742 s Estimating background... Estimating background took 4.13097691536 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0351679325104 s Creating peak regions... Creating peak regions took 0.106999158859 s Estimating background... Estimating background took 0.257858991623 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.041267156601 s Creating peak regions... Creating peak regions took 0.135771989822 s Estimating background... Estimating background took 0.254986047745 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0418431758881 s Creating peak regions... Creating peak regions took 0.110179901123 s Estimating background... Estimating background took 0.253993034363 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0313460826874 s Creating peak regions... Creating peak regions took 0.125710010529 s Estimating background... Estimating background took 0.252099990845 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 6.59458899498 s Creating peak regions... Creating peak regions took 56.9130859375 s Estimating background... Estimating background took 0.666480064392 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 5.83346796036 s Creating peak regions... Creating peak regions took 50.0110640526 s Estimating background... Estimating background took 0.47248005867 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 5.23704409599 s Creating peak regions... Creating peak regions took 48.8083868027 s Estimating background... Estimating background took 0.459291934967 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0581669807434 s Creating peak regions... Creating peak regions took 0.0877530574799 s Estimating background... Estimating background took 0.247624874115 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 4.78928804398 s Creating peak regions... Creating peak regions took 47.0860719681 s Estimating background... Estimating background took 0.359114170074 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0270249843597 s Creating peak regions... Creating peak regions took 0.493883132935 s Estimating background... Estimating background took 0.255360126495 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 4.89616417885 s Creating peak regions... Creating peak regions took 46.2869939804 s Estimating background... Estimating background took 0.365625143051 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 8.83873677254 s Creating peak regions... Creating peak regions took 43.5891749859 s Estimating background... Estimating background took 0.4539539814 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 4.2505710125 s Creating peak regions... Creating peak regions took 39.906167984 s Estimating background... Estimating background took 0.376247882843 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 4.81550598145 s Creating peak regions... Creating peak regions took 37.1357390881 s Estimating background... Estimating background took 0.49023103714 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0719900131226 s Creating peak regions... Creating peak regions took 0.0333590507507 s Estimating background... Estimating background took 0.260356903076 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0364611148834 s Creating peak regions... Creating peak regions took 0.0617101192474 s Estimating background... Estimating background took 0.256778001785 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0351691246033 s Creating peak regions... Creating peak regions took 0.0316281318665 s Estimating background... Estimating background took 0.260656833649 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0333490371704 s Creating peak regions... Creating peak regions took 0.0397961139679 s Estimating background... Estimating background took 0.262111902237 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0354409217834 s Creating peak regions... Creating peak regions took 0.0709819793701 s Estimating background... Estimating background took 0.257879018784 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.033322095871 s Creating peak regions... Creating peak regions took 0.0553917884827 s Estimating background... Estimating background took 0.240278959274 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.032075881958 s Creating peak regions... Creating peak regions took 0.0339350700378 s Estimating background... Estimating background took 0.2538189888 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.032557964325 s Creating peak regions... Creating peak regions took 0.0254130363464 s Estimating background... Estimating background took 0.26303601265 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0345129966736 s Creating peak regions... Creating peak regions took 0.0354211330414 s Estimating background... Estimating background took 0.252847909927 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0334451198578 s Creating peak regions... Creating peak regions took 0.0505080223083 s Estimating background... Estimating background took 0.306879043579 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0331120491028 s Creating peak regions... Creating peak regions took 0.111613035202 s Estimating background... Estimating background took 0.258697032928 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0334610939026 s Creating peak regions... Creating peak regions took 0.0322189331055 s Estimating background... Estimating background took 0.260276079178 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.035658121109 s Creating peak regions... Creating peak regions took 0.0234031677246 s Estimating background... Estimating background took 0.262053966522 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.044370174408 s Creating peak regions... Creating peak regions took 0.0868539810181 s Estimating background... Estimating background took 0.26101899147 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0337398052216 s Creating peak regions... Creating peak regions took 0.0447108745575 s Estimating background... Estimating background took 0.260785102844 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0350790023804 s Creating peak regions... Creating peak regions took 0.0340099334717 s Estimating background... Estimating background took 0.244894981384 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.179518938065 s Creating peak regions... Creating peak regions took 0.0307078361511 s Estimating background... Estimating background took 0.246300935745 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0365059375763 s Creating peak regions... Creating peak regions took 0.040764093399 s Estimating background... Estimating background took 0.260210037231 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0639860630035 s Creating peak regions... Creating peak regions took 0.0681149959564 s Estimating background... Estimating background took 0.291966199875 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0397961139679 s Creating peak regions... Creating peak regions took 0.0875949859619 s Estimating background... Estimating background took 0.259760856628 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0371179580688 s Creating peak regions... Creating peak regions took 0.0280611515045 s Estimating background... Estimating background took 0.258960962296 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0373120307922 s Creating peak regions... Creating peak regions took 0.0350389480591 s Estimating background... Estimating background took 0.260487794876 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0889010429382 s Creating peak regions... Creating peak regions took 0.204442024231 s Estimating background... Estimating background took 0.265849113464 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 2.28401184082 s Creating peak regions... Creating peak regions took 45.7308759689 s Estimating background... Estimating background took 0.28164100647 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.0519399642944 s Creating peak regions... Creating peak regions took 0.436204910278 s Estimating background... Estimating background took 0.253300905228 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Reading data took 0.044440984726 s Creating peak regions... Creating peak regions took 21.3529188633 s Estimating background... Estimating background took 0.273618936539 s Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data... Processing GATA1-G1E-ER4-24h-Rep1-GSM1689017.35mers.unique.bam Reading in data...