INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-0h-Rep2-GSM1689013-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 3.66254901886 s
Creating peak regions... Creating peak regions took 45.0918209553 s
Estimating background... Estimating background took 11.7511200905 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 4.35188794136 s
Creating peak regions... Creating peak regions took 42.4584031105 s
Estimating background... Estimating background took 15.3888161182 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 3.48940706253 s
Creating peak regions... Creating peak regions took 39.7331399918 s
Estimating background... Estimating background took 12.5034508705 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 3.56005811691 s
Creating peak regions... Creating peak regions took 38.7090699673 s
Estimating background... Estimating background took 12.8138461113 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 4.11110901833 s
Creating peak regions... Creating peak regions took 40.1476340294 s
Estimating background... Estimating background took 14.3596270084 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 3.2853910923 s
Creating peak regions... Creating peak regions took 36.5591819286 s
Estimating background... Estimating background took 11.1129798889 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 3.22388386726 s
Creating peak regions... Creating peak regions took 32.5643968582 s
Estimating background... Estimating background took 9.91468405724 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 2.88961315155 s
Creating peak regions... Creating peak regions took 31.6370520592 s
Estimating background... Estimating background took 10.6701231003 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 2.63918495178 s
Creating peak regions... Creating peak regions took 28.9895391464 s
Estimating background... Estimating background took 9.06820607185 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 1.99710893631 s
Creating peak regions... Creating peak regions took 20.7086777687 s
Estimating background... Estimating background took 7.00296092033 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689013.35mers.unique.bam
Reading in data... Reading data took 7.65582084656 s
Creating peak regions... Creating peak regions took 70.0450789928 s
Estimating background...