INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/home/users/marinovg/genomes/blacklists/mm10/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='GATA1-G1E-ER4-0h-Rep2-GSM1689012-peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.4862139225 s
Creating peak regions... Creating peak regions took 43.2792649269 s
Estimating background... Estimating background took 8.40739703178 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.88923406601 s
Creating peak regions... Creating peak regions took 38.7476398945 s
Estimating background... Estimating background took 10.5315108299 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.35072302818 s
Creating peak regions... Creating peak regions took 37.8772630692 s
Estimating background... Estimating background took 8.8433599472 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.35527014732 s
Creating peak regions... Creating peak regions took 37.7242929935 s
Estimating background... Estimating background took 9.06624007225 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.71847295761 s
Creating peak regions... Creating peak regions took 39.4194869995 s
Estimating background... Estimating background took 9.94429111481 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.14971590042 s
Creating peak regions... Creating peak regions took 32.9965310097 s
Estimating background... Estimating background took 8.04605793953 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 2.20041584969 s
Creating peak regions... Creating peak regions took 32.8244831562 s
Estimating background... Estimating background took 7.17647099495 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 1.91427206993 s
Creating peak regions... Creating peak regions took 31.7677109241 s
Estimating background... Estimating background took 7.37193489075 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 1.79418778419 s
Creating peak regions... Creating peak regions took 28.7275850773 s
Estimating background... Estimating background took 6.80669307709 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 1.40055203438 s
Creating peak regions... Creating peak regions took 20.7088589668 s
Estimating background... Estimating background took 5.4818239212 s


Processing GATA1-G1E-ER4-0h-Rep2-GSM1689012.35mers.unique.bam
Reading in data... Reading data took 5.00017499924 s
Creating peak regions... Creating peak regions took 66.7370731831 s
Estimating background...