ENCFF991WOD bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF539TVP, ENCFF643CGH 700345010 ENCODE Processing Pipeline d75129a57768089e947e34a4185b0dad https://www.encodeproject.org/files/ENCFF991WOD/@@download/ENCFF991WOD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF232PSU bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF925UZZ 875444682 ENCODE Processing Pipeline 31b910dbac1bdc8cd5b033f0a59d8fdb https://www.encodeproject.org/files/ENCFF232PSU/@@download/ENCFF232PSU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF337GMY bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF643CGH 3978117933 ENCODE Processing Pipeline a6537270b82b3d47c526e9e4c3f846ad https://www.encodeproject.org/files/ENCFF337GMY/@@download/ENCFF337GMY.bam GRCh38 released mild to moderate bottlenecking ENCFF821HMU bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF643CGH 5031741844 ENCODE Processing Pipeline 1ec56176feffb806d192d3cb4cdb0385 https://www.encodeproject.org/files/ENCFF821HMU/@@download/ENCFF821HMU.bam GRCh38 released mild to moderate bottlenecking ENCFF705PYY bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF695OMH 1122028182 ENCODE Processing Pipeline 10e662ffe2618d88b4902ec4b1c5ee5b https://www.encodeproject.org/files/ENCFF705PYY/@@download/ENCFF705PYY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469ZEQ bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF679POI 1682109846 ENCODE Processing Pipeline 5bb486f87582f518c7e1733baac4c455 https://www.encodeproject.org/files/ENCFF469ZEQ/@@download/ENCFF469ZEQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF057CNY bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF643CGH, ENCFF771AEO 791325096 ENCODE Processing Pipeline ba4d6e065931aba1f857dffbc6f58ddb https://www.encodeproject.org/files/ENCFF057CNY/@@download/ENCFF057CNY.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF216TEN bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF856FXU, ENCFF947GWY 803771068 ENCODE Processing Pipeline 6c2431435307a02b5d5d77d649829866 https://www.encodeproject.org/files/ENCFF216TEN/@@download/ENCFF216TEN.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF519OGB bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF643CGH 3455947623 ENCODE Processing Pipeline 77f9a1cdcabe935b7670481f47818324 https://www.encodeproject.org/files/ENCFF519OGB/@@download/ENCFF519OGB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883BFY bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF643CGH, ENCFF663NBI, ENCFF667DGY 4005623520 ENCODE Processing Pipeline d649be16a109e60c79a897b9305baf17 https://www.encodeproject.org/files/ENCFF883BFY/@@download/ENCFF883BFY.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF924HFP bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF643CGH 1170055517 ENCODE Processing Pipeline 0fe0059fd7312859063fce2222627d5b https://www.encodeproject.org/files/ENCFF924HFP/@@download/ENCFF924HFP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF023XMW bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF823JNT 1204878534 ENCODE Processing Pipeline b3f2d50545205ab07605f44daf9c935c https://www.encodeproject.org/files/ENCFF023XMW/@@download/ENCFF023XMW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF530VNF bam alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF643CGH, ENCFF873YZS 4943309999 ENCODE Processing Pipeline 654f199f1a777fd80ff42351efe200c0 https://www.encodeproject.org/files/ENCFF530VNF/@@download/ENCFF530VNF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF742QMN bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF643CGH 5832863355 ENCODE Processing Pipeline 50fdceda3abcdfab5b47ba8660b13cdb https://www.encodeproject.org/files/ENCFF742QMN/@@download/ENCFF742QMN.bam GRCh38 released antibody characterized with exemption ENCFF316XFC bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF643CGH 5539352921 ENCODE Processing Pipeline f9ac9d0cfd6844bd805838db7a6297a5 https://www.encodeproject.org/files/ENCFF316XFC/@@download/ENCFF316XFC.bam GRCh38 released antibody characterized with exemption ENCFF256UVH bam alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF643CGH 7839774332 ENCODE Processing Pipeline 24b765a991c8d354aa0c0df67db8c6dc https://www.encodeproject.org/files/ENCFF256UVH/@@download/ENCFF256UVH.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF498EFE bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF643CGH 3701443888 ENCODE Processing Pipeline c39b60298ec20142f8b332ce95ce8f7c https://www.encodeproject.org/files/ENCFF498EFE/@@download/ENCFF498EFE.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF302OZO bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF643CGH 6777189763 ENCODE Processing Pipeline 7e64338a9e3ef841c79f325c2694a4f2 https://www.encodeproject.org/files/ENCFF302OZO/@@download/ENCFF302OZO.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF855BDE bam alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF643CGH, ENCFF682QTO 4531020984 ENCODE Processing Pipeline 4a7099cc1c9ce48ab5f0af71dbeef096 https://www.encodeproject.org/files/ENCFF855BDE/@@download/ENCFF855BDE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF949ENV bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF643CGH, ENCFF734FMS 4045558156 ENCODE Processing Pipeline 3dd7575c03c8e515754de16ec407f82f https://www.encodeproject.org/files/ENCFF949ENV/@@download/ENCFF949ENV.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF280AEF bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF643CGH, ENCFF677HXI 4273869269 ENCODE Processing Pipeline 7cbf1e4c6090e0492436eb8595abe6ab https://www.encodeproject.org/files/ENCFF280AEF/@@download/ENCFF280AEF.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF066JMV bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF643CGH, ENCFF831HED 3995880451 ENCODE Processing Pipeline 602d8339a1c636309d54d92804819e49 https://www.encodeproject.org/files/ENCFF066JMV/@@download/ENCFF066JMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF330XAC bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF643CGH 8299455783 ENCODE Processing Pipeline e88564eaf6627e2724a5c6bfa6e93fde https://www.encodeproject.org/files/ENCFF330XAC/@@download/ENCFF330XAC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF602TRG bam alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF643CGH, ENCFF687SPD 2990563873 ENCODE Processing Pipeline 71c6a4ab979daf50ab9c81f4a447886d https://www.encodeproject.org/files/ENCFF602TRG/@@download/ENCFF602TRG.bam GRCh38 released antibody characterized with exemption ENCFF396AXY bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF643CGH, ENCFF718HUU 3203536114 ENCODE Processing Pipeline a3d4e75e42a9b5b3c9d87a651404bcf9 https://www.encodeproject.org/files/ENCFF396AXY/@@download/ENCFF396AXY.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF391BBO bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF643CGH, ENCFF977AJQ 3537540672 ENCODE Processing Pipeline 37d2700dfe277ecd4fe427b274655f16 https://www.encodeproject.org/files/ENCFF391BBO/@@download/ENCFF391BBO.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF715AOC bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF643CGH 3712062830 ENCODE Processing Pipeline fac5968690fbaba3bd134c4682ed3034 https://www.encodeproject.org/files/ENCFF715AOC/@@download/ENCFF715AOC.bam GRCh38 released antibody characterized with exemption ENCFF516TOF bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF643CGH, ENCFF920GYM 4711099203 ENCODE Processing Pipeline 8f6a725f8f747df14aa60d3efcc1c596 https://www.encodeproject.org/files/ENCFF516TOF/@@download/ENCFF516TOF.bam GRCh38 released antibody characterized with exemption ENCFF332RWH bam alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF643CGH, ENCFF837BAY 2947752680 ENCODE Processing Pipeline da6a7f4cd16b3bf70bd41c02ba448ffd https://www.encodeproject.org/files/ENCFF332RWH/@@download/ENCFF332RWH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF257JTU bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF853ECX 950574006 ENCODE Processing Pipeline 3cae85e24247d657e72abd47332f0ca0 https://www.encodeproject.org/files/ENCFF257JTU/@@download/ENCFF257JTU.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF214NPN bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF038RNL, ENCFF643CGH 1222803815 ENCODE Processing Pipeline 7c03cf4c1c91e2e6a0872a519dee785f https://www.encodeproject.org/files/ENCFF214NPN/@@download/ENCFF214NPN.bam GRCh38 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF158BYF bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF643CGH 3948178839 ENCODE Processing Pipeline dd4d0bb31b80a1986d4a13b937d3b606 https://www.encodeproject.org/files/ENCFF158BYF/@@download/ENCFF158BYF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF557QLG bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF643CGH 5071912433 ENCODE Processing Pipeline 8a972ad63360616fb4442e54df1ab17f https://www.encodeproject.org/files/ENCFF557QLG/@@download/ENCFF557QLG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF200WCM bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF801MAM 725614179 ENCODE Processing Pipeline f89c794a54e1a7a15ec41026100e000b https://www.encodeproject.org/files/ENCFF200WCM/@@download/ENCFF200WCM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF346ENH bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF822AJG 857056875 ENCODE Processing Pipeline dd071e72914f4808af8da625417ee0b6 https://www.encodeproject.org/files/ENCFF346ENH/@@download/ENCFF346ENH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF378QWS bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF643CGH, ENCFF994DFN 5308384950 ENCODE Processing Pipeline 4f3c52895c6b867d874690c70e99960a https://www.encodeproject.org/files/ENCFF378QWS/@@download/ENCFF378QWS.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF878UKW bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF643CGH, ENCFF807OLO, ENCFF942FDD 5162800080 ENCODE Processing Pipeline 97a674507fc671e2c8188bf9417ad1e1 https://www.encodeproject.org/files/ENCFF878UKW/@@download/ENCFF878UKW.bam GRCh38 released missing genetic modification characterization missing mapped reads lengths ENCFF066FOE bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF637DCS, ENCFF643CGH, ENCFF813FAX 4676140388 ENCODE Processing Pipeline 676685a7e76ecb50597ae36d5508a6fa https://www.encodeproject.org/files/ENCFF066FOE/@@download/ENCFF066FOE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF731WSZ bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428KVQ, ENCFF643CGH, ENCFF845NIC 5288478708 ENCODE Processing Pipeline aa722ece7bfbd2143015031894d9e674 https://www.encodeproject.org/files/ENCFF731WSZ/@@download/ENCFF731WSZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF530UEA bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF643CGH, ENCFF710XSY 2328187559 ENCODE Processing Pipeline 33a0d391a881b3f8d4fa9f09194acd91 https://www.encodeproject.org/files/ENCFF530UEA/@@download/ENCFF530UEA.bam GRCh38 released low read depth ENCFF437UWB bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF643CGH, ENCFF705WPL 2738955274 ENCODE Processing Pipeline bab04e0a09c61bb552c00d92c160d03b https://www.encodeproject.org/files/ENCFF437UWB/@@download/ENCFF437UWB.bam GRCh38 released low read depth ENCFF360OZT bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF643CGH 6468833600 ENCODE Processing Pipeline f15323978e463e2513ae85d3189c56a8 https://www.encodeproject.org/files/ENCFF360OZT/@@download/ENCFF360OZT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF856SJL bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF643CGH 6595427591 ENCODE Processing Pipeline fb8fa5971520eb8227c0c55612c5be68 https://www.encodeproject.org/files/ENCFF856SJL/@@download/ENCFF856SJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF438GBD bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF643CGH, ENCFF920SBM 3498115872 ENCODE Processing Pipeline b6415a44ce28929e9aa00764490fc7a5 https://www.encodeproject.org/files/ENCFF438GBD/@@download/ENCFF438GBD.bam GRCh38 released low read depth ENCFF601CVJ bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF643CGH, ENCFF698ICA, ENCFF839LPL 4297172506 ENCODE Processing Pipeline 2f8e42b8ff22fe36d4517bc4bc8f8c71 https://www.encodeproject.org/files/ENCFF601CVJ/@@download/ENCFF601CVJ.bam GRCh38 released low read depth ENCFF508JKO bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF803CCE, ENCFF917BAA 1789971113 ENCODE Processing Pipeline 05e4cf55fd7c10bcb18240e5d22f0155 https://www.encodeproject.org/files/ENCFF508JKO/@@download/ENCFF508JKO.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF260TPL bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF643CGH, ENCFF895VJN 2171384744 ENCODE Processing Pipeline 4ef35c6e0df53cf910fa94e5bdccf549 https://www.encodeproject.org/files/ENCFF260TPL/@@download/ENCFF260TPL.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF503UVW bam alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF643CGH, ENCFF800GHL 7718144496 ENCODE Processing Pipeline c91381a75b7926be37a4bd1a55872eb1 https://www.encodeproject.org/files/ENCFF503UVW/@@download/ENCFF503UVW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF285CII bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF643CGH 2602940586 ENCODE Processing Pipeline cf7270c0dfac26167418a5dc25f04689 https://www.encodeproject.org/files/ENCFF285CII/@@download/ENCFF285CII.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF096KBP bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF643CGH, ENCFF960ZID 3500924225 ENCODE Processing Pipeline 53bd3818c473c706469d38fc367b42e7 https://www.encodeproject.org/files/ENCFF096KBP/@@download/ENCFF096KBP.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF916PDB bam alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF643CGH, ENCFF945PBZ 2314620758 ENCODE Processing Pipeline 033dc7d8533f11ca9e8ec0f53ad5f327 https://www.encodeproject.org/files/ENCFF916PDB/@@download/ENCFF916PDB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF136USC bam alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF643CGH, ENCFF784DME 1914233569 ENCODE Processing Pipeline 5fd6b13f14741e3e254fc6b1285ef316 https://www.encodeproject.org/files/ENCFF136USC/@@download/ENCFF136USC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF339EOA bam alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643CGH, ENCFF643ITK 3356304028 ENCODE Processing Pipeline 0f935e01614675f820475dd06a80e8a6 https://www.encodeproject.org/files/ENCFF339EOA/@@download/ENCFF339EOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF040NCF bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF643CGH, ENCFF908SKY, ENCFF942ZRE 4138210429 ENCODE Processing Pipeline 143be789d3393db550005938676ec12d https://www.encodeproject.org/files/ENCFF040NCF/@@download/ENCFF040NCF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF172XFW bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF643CGH, ENCFF770NDG 5607680139 ENCODE Processing Pipeline ca199e29f0396e93d077415311a7e83f https://www.encodeproject.org/files/ENCFF172XFW/@@download/ENCFF172XFW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF604JZN bam alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF342VAQ, ENCFF422OJZ, ENCFF643CGH 2279732950 ENCODE Processing Pipeline 2deac8fa2fc133dacb9d3c629e9a5f2b https://www.encodeproject.org/files/ENCFF604JZN/@@download/ENCFF604JZN.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF527RBK bam alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF643CGH, ENCFF846BTF 2447866623 ENCODE Processing Pipeline 55cb02bcd104d8000978e037c4b4ad71 https://www.encodeproject.org/files/ENCFF527RBK/@@download/ENCFF527RBK.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF353XMB bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF643CGH, ENCFF745PCH 4429112291 ENCODE Processing Pipeline d326b7cfc0f280aa784cc5a4c33475a1 https://www.encodeproject.org/files/ENCFF353XMB/@@download/ENCFF353XMB.bam GRCh38 released ENCFF131XTL bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF643CGH, ENCFF826AKY 4671454365 ENCODE Processing Pipeline ff83322aeb0648940a5eaca5be32601b https://www.encodeproject.org/files/ENCFF131XTL/@@download/ENCFF131XTL.bam GRCh38 released ENCFF046ZDT bam alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 100 ENCFF028SIJ, ENCFF643CGH, ENCFF659QDJ 2418362159 ENCODE Processing Pipeline 4f939cfed0d92e53bdad669ce99188f8 https://www.encodeproject.org/files/ENCFF046ZDT/@@download/ENCFF046ZDT.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF345GIA bam alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF466DDM, ENCFF643CGH, ENCFF768VKW 2869114049 ENCODE Processing Pipeline 846790d129b38c514672a5b8ea486e61 https://www.encodeproject.org/files/ENCFF345GIA/@@download/ENCFF345GIA.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF657ZIF bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF643CGH 3487588864 ENCODE Processing Pipeline c2c4fdc785d39cbd1105f94f21ac533d https://www.encodeproject.org/files/ENCFF657ZIF/@@download/ENCFF657ZIF.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF682PSU bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF643CGH, ENCFF971GFY 4147990101 ENCODE Processing Pipeline 046911249664b44f9343e80f39aecb0d https://www.encodeproject.org/files/ENCFF682PSU/@@download/ENCFF682PSU.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF259CDS bam alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF643CGH, ENCFF814ZXA 3315513718 ENCODE Processing Pipeline 66c21029697e50c711fa15893791cf87 https://www.encodeproject.org/files/ENCFF259CDS/@@download/ENCFF259CDS.bam GRCh38 released antibody characterized with exemption ENCFF195MMC bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF643CGH 991843793 ENCODE Processing Pipeline 144f685d1f025615a67126dbfa181e51 https://www.encodeproject.org/files/ENCFF195MMC/@@download/ENCFF195MMC.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF371LTF bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF643CGH 1290113177 ENCODE Processing Pipeline b6ed03f085f43a6fb93432fade2fea31 https://www.encodeproject.org/files/ENCFF371LTF/@@download/ENCFF371LTF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF315PWO bam alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF643CGH, ENCFF963NAF 3984913954 ENCODE Processing Pipeline 80f2095c70b6a5d49ae8bb0ee70fcd7d https://www.encodeproject.org/files/ENCFF315PWO/@@download/ENCFF315PWO.bam GRCh38 released antibody characterized with exemption ENCFF094RVF bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF643CGH, ENCFF871KIO 3560103909 ENCODE Processing Pipeline 1447f2a22de63acc2e12f7dc1d1a8fc7 https://www.encodeproject.org/files/ENCFF094RVF/@@download/ENCFF094RVF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF946NSO bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF643CGH, ENCFF928EJZ 4363090811 ENCODE Processing Pipeline fcd47889fdb741eab39844cfb9513e6f https://www.encodeproject.org/files/ENCFF946NSO/@@download/ENCFF946NSO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF140JDN bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF643CGH 4562269610 ENCODE Processing Pipeline a25ed46902c3d0164532b7cfd183c9be https://www.encodeproject.org/files/ENCFF140JDN/@@download/ENCFF140JDN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF591YZP bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF643CGH 5258393822 ENCODE Processing Pipeline 12fe5204b007548d85b56bc6d97f0868 https://www.encodeproject.org/files/ENCFF591YZP/@@download/ENCFF591YZP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF648GWA bam alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF643CGH 2774008686 ENCODE Processing Pipeline 5a388de9e763e499d2f4506a63565ff7 https://www.encodeproject.org/files/ENCFF648GWA/@@download/ENCFF648GWA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF033VMH bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF811ZQF 1116396701 ENCODE Processing Pipeline f07ee86baf52de04248a6438d119b7fb https://www.encodeproject.org/files/ENCFF033VMH/@@download/ENCFF033VMH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF328AHJ bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF643CGH 1045683657 ENCODE Processing Pipeline 8844b1d4e3ff63672f7b4a20c762c14f https://www.encodeproject.org/files/ENCFF328AHJ/@@download/ENCFF328AHJ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887LAD bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF755BUR, ENCFF994RSC 4181847246 ENCODE Processing Pipeline 3e880059026af4e9b45523dcf0ced39e https://www.encodeproject.org/files/ENCFF887LAD/@@download/ENCFF887LAD.bam GRCh38 released ENCFF777ZPZ bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF643CGH, ENCFF789UDV 5841572111 ENCODE Processing Pipeline b584ff9e5d6b85f057e0a51d75ff2542 https://www.encodeproject.org/files/ENCFF777ZPZ/@@download/ENCFF777ZPZ.bam GRCh38 released ENCFF450IPE bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF937ICR 1746260993 ENCODE Processing Pipeline 6603a67b4b47e728e70f639daf165f53 https://www.encodeproject.org/files/ENCFF450IPE/@@download/ENCFF450IPE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515VII bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF643CGH 1690927208 ENCODE Processing Pipeline c086ca727921e6a702f73f05595d8f8a https://www.encodeproject.org/files/ENCFF515VII/@@download/ENCFF515VII.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF777VSR bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF951QJT 1124336501 ENCODE Processing Pipeline b7956a84263b8d6fb18a05c360846a1e https://www.encodeproject.org/files/ENCFF777VSR/@@download/ENCFF777VSR.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF212FUJ bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF517FOY, ENCFF643CGH 1382711163 ENCODE Processing Pipeline 8b00d25d574359872f44689f37e73ca0 https://www.encodeproject.org/files/ENCFF212FUJ/@@download/ENCFF212FUJ.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF024ELD bam alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF831BTD, ENCFF975DXM 2847663416 ENCODE Processing Pipeline 55e7fb45b7a5b424d1ad74e9cb64df6d https://www.encodeproject.org/files/ENCFF024ELD/@@download/ENCFF024ELD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF604KKL bam alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF643CGH, ENCFF883DYX 3552919639 ENCODE Processing Pipeline b114092c9feeb0cd040227c80bd46b6e https://www.encodeproject.org/files/ENCFF604KKL/@@download/ENCFF604KKL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF254IUH bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF697STR, ENCFF766QOB 2907338780 ENCODE Processing Pipeline 743060d1a4e279740492b634f01be06d https://www.encodeproject.org/files/ENCFF254IUH/@@download/ENCFF254IUH.bam GRCh38 released low read depth ENCFF167NVK bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF643CGH, ENCFF887TWQ 2804124820 ENCODE Processing Pipeline eacdcd40493b32e31a9f978a19de2178 https://www.encodeproject.org/files/ENCFF167NVK/@@download/ENCFF167NVK.bam GRCh38 released low read depth ENCFF548GPB bam alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF643CGH, ENCFF844CHO 3911872816 ENCODE Processing Pipeline 4afaa1fb299f71cbcc32220c317eb393 https://www.encodeproject.org/files/ENCFF548GPB/@@download/ENCFF548GPB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF668FCG bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF643CGH 5638457482 ENCODE Processing Pipeline 21f9edceb8e77e091293ec350ba32a02 https://www.encodeproject.org/files/ENCFF668FCG/@@download/ENCFF668FCG.bam GRCh38 released ENCFF145NON bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF643CGH, ENCFF721WRK 6519958105 ENCODE Processing Pipeline a7ca88f7c13cf4edde97dbf91ca22e69 https://www.encodeproject.org/files/ENCFF145NON/@@download/ENCFF145NON.bam GRCh38 released ENCFF632WSK bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF643CGH, ENCFF968SHS 3097794878 ENCODE Processing Pipeline bb404bccfca41bcdfe1c3f46b4003893 https://www.encodeproject.org/files/ENCFF632WSK/@@download/ENCFF632WSK.bam GRCh38 released low read depth ENCFF226IAA bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF643CGH 3742608948 ENCODE Processing Pipeline b3ad9602bb8926b585b0fd984376295a https://www.encodeproject.org/files/ENCFF226IAA/@@download/ENCFF226IAA.bam GRCh38 released low read depth ENCFF373DUA bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF643CGH 4122423719 ENCODE Processing Pipeline b5928c78d4c91b4b39990476a19e4d7b https://www.encodeproject.org/files/ENCFF373DUA/@@download/ENCFF373DUA.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF382QTB bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF643CGH 4036680207 ENCODE Processing Pipeline ea502aa95c6b1d7f39d2923e7f7e1a36 https://www.encodeproject.org/files/ENCFF382QTB/@@download/ENCFF382QTB.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF295FAD bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF666SRS 1112963946 ENCODE Processing Pipeline ba799f6eed82f702b60e06aa622ce94a https://www.encodeproject.org/files/ENCFF295FAD/@@download/ENCFF295FAD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF792WHM bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF816KGP 2011357202 ENCODE Processing Pipeline ae919fbc5b53fd703c24f7ec86735a60 https://www.encodeproject.org/files/ENCFF792WHM/@@download/ENCFF792WHM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF587PVQ bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF643CGH, ENCFF959QTN 1069440142 ENCODE Processing Pipeline ff7c03249ca5cfec1c27f89d62d949d1 https://www.encodeproject.org/files/ENCFF587PVQ/@@download/ENCFF587PVQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF742TAS bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF643CGH 1624070612 ENCODE Processing Pipeline 326fef1303a337b302cab0c95306f98b https://www.encodeproject.org/files/ENCFF742TAS/@@download/ENCFF742TAS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF083FZS bam alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF643CGH 1111733083 ENCODE Processing Pipeline a378a22805a04b4ae2bdff0c16f86dfa https://www.encodeproject.org/files/ENCFF083FZS/@@download/ENCFF083FZS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF903QIT bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF643CGH 5505067428 ENCODE Processing Pipeline 8e8bf853066d2afc3d769a0f19301862 https://www.encodeproject.org/files/ENCFF903QIT/@@download/ENCFF903QIT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF510THU bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF699WWO, ENCFF864GEB 5745482112 ENCODE Processing Pipeline 0690c51cf39a56d99c9b46043f1e26ca https://www.encodeproject.org/files/ENCFF510THU/@@download/ENCFF510THU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF931HWG bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF643CGH, ENCFF790ADI 4001845676 ENCODE Processing Pipeline adb719d0ad46240ef1c3a5d20c9164d0 https://www.encodeproject.org/files/ENCFF931HWG/@@download/ENCFF931HWG.bam GRCh38 released missing genetic modification characterization ENCFF562PEW bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF643CGH, ENCFF926UQW 4584921995 ENCODE Processing Pipeline 3565c96ef7c3f2ce6312257d175908ba https://www.encodeproject.org/files/ENCFF562PEW/@@download/ENCFF562PEW.bam GRCh38 released missing genetic modification characterization ENCFF072SKI bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF526NYU, ENCFF643CGH 708343934 ENCODE Processing Pipeline 4bade86559c4d07e006fc300cd46f8f4 https://www.encodeproject.org/files/ENCFF072SKI/@@download/ENCFF072SKI.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF030XLK bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF253ROA, ENCFF643CGH 1153689566 ENCODE Processing Pipeline af8caa2694858009872092e34b9e23c8 https://www.encodeproject.org/files/ENCFF030XLK/@@download/ENCFF030XLK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF069JAM bam alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF643CGH, ENCFF981LZA 4269617818 ENCODE Processing Pipeline f5dd38b1b0decd66ac9605ac80e0e79d https://www.encodeproject.org/files/ENCFF069JAM/@@download/ENCFF069JAM.bam GRCh38 released antibody characterized with exemption ENCFF125XMV bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF643CGH, ENCFF997CNG 4625664645 ENCODE Processing Pipeline 2e467893318bd737504f24fb931be556 https://www.encodeproject.org/files/ENCFF125XMV/@@download/ENCFF125XMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF673WGB bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF643CGH 10141771274 ENCODE Processing Pipeline aadfcc6c7f220fa226e753025676bb0e https://www.encodeproject.org/files/ENCFF673WGB/@@download/ENCFF673WGB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF018ITN bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF643CGH, ENCFF920YLL 3922535427 ENCODE Processing Pipeline 370aca14dcbd55c3ed75cba26d533063 https://www.encodeproject.org/files/ENCFF018ITN/@@download/ENCFF018ITN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF560TMS bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF643CGH, ENCFF746BEA 4876341558 ENCODE Processing Pipeline fa62ee1c6dfe09107f27a9d3744c1c47 https://www.encodeproject.org/files/ENCFF560TMS/@@download/ENCFF560TMS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF019RWB bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF643CGH 2218229655 ENCODE Processing Pipeline bb5f9c4fe1a5cf87962476bf3bb9e60f https://www.encodeproject.org/files/ENCFF019RWB/@@download/ENCFF019RWB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF353EFN bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF643CGH 3007341660 ENCODE Processing Pipeline 946b1f96d4c37060e4cc179193cd356a https://www.encodeproject.org/files/ENCFF353EFN/@@download/ENCFF353EFN.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF870YQK bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF643CGH, ENCFF952VLJ 3492365386 ENCODE Processing Pipeline 9d8f66b558bee3f31aea2350297f0696 https://www.encodeproject.org/files/ENCFF870YQK/@@download/ENCFF870YQK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF338NXC bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF643CGH, ENCFF697JWX 4969036124 ENCODE Processing Pipeline 7b10d83afbcbe1537f7ffb79a62cd0c6 https://www.encodeproject.org/files/ENCFF338NXC/@@download/ENCFF338NXC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF754GYS bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF643CGH, ENCFF845NVE 4515247950 ENCODE Processing Pipeline c0d371dc787b865a438d224a6037691d https://www.encodeproject.org/files/ENCFF754GYS/@@download/ENCFF754GYS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF035CJB bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF643CGH, ENCFF843QOR 3247919616 ENCODE Processing Pipeline aa3d36df032a4a1c19332d879cdc7573 https://www.encodeproject.org/files/ENCFF035CJB/@@download/ENCFF035CJB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF908SPX bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF939TTG 1106836211 ENCODE Processing Pipeline fefc088ff89f6e4385df01bfe90fc179 https://www.encodeproject.org/files/ENCFF908SPX/@@download/ENCFF908SPX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF010EFV bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF643CGH 1021640457 ENCODE Processing Pipeline 3066302e93e782edd312103d6393d196 https://www.encodeproject.org/files/ENCFF010EFV/@@download/ENCFF010EFV.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF390DNG bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF337FVY, ENCFF643CGH 201322490 ENCODE Processing Pipeline d25ba8bd5ca59e1373904ea398f9a304 https://www.encodeproject.org/files/ENCFF390DNG/@@download/ENCFF390DNG.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF474FMS bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF064RLS, ENCFF643CGH 250920446 ENCODE Processing Pipeline 8c5a18d2d1493e6aa1a3e0d5243c630a https://www.encodeproject.org/files/ENCFF474FMS/@@download/ENCFF474FMS.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF138PZX bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF643CGH 3684165028 ENCODE Processing Pipeline ee2c90a9173fe7270ad877b9399b5813 https://www.encodeproject.org/files/ENCFF138PZX/@@download/ENCFF138PZX.bam GRCh38 released mild to moderate bottlenecking ENCFF039QUZ bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF643CGH 4305189649 ENCODE Processing Pipeline d2779d2c2f0a6640633f45e4772ba07d https://www.encodeproject.org/files/ENCFF039QUZ/@@download/ENCFF039QUZ.bam GRCh38 released mild to moderate bottlenecking ENCFF059AYM bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF643CGH 6049847380 ENCODE Processing Pipeline 4337146fcc2e400a5e372efcd5b63d05 https://www.encodeproject.org/files/ENCFF059AYM/@@download/ENCFF059AYM.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF272DYC bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF643CGH 6570215360 ENCODE Processing Pipeline 2d7b758fd2df7431b2e8a35364dec584 https://www.encodeproject.org/files/ENCFF272DYC/@@download/ENCFF272DYC.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms ENCFF589IBH bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF643CGH 3189099028 ENCODE Processing Pipeline c27a1b8845a06f204df59b688087cf1a https://www.encodeproject.org/files/ENCFF589IBH/@@download/ENCFF589IBH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF514FRG bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF778OSN, ENCFF839XCL 4310261140 ENCODE Processing Pipeline 82c301fc09270d64843d400ad1239efa https://www.encodeproject.org/files/ENCFF514FRG/@@download/ENCFF514FRG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF251EVS bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF643CGH, ENCFF649VGU 1272061373 ENCODE Processing Pipeline f724c6fee7cb64da7fce256a7c52a66a https://www.encodeproject.org/files/ENCFF251EVS/@@download/ENCFF251EVS.bam GRCh38 released missing genetic modification characterization ENCFF619SRD bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF643CGH 1502995676 ENCODE Processing Pipeline d4a8bec12dcdfa84026fbbc5a591496f https://www.encodeproject.org/files/ENCFF619SRD/@@download/ENCFF619SRD.bam GRCh38 released missing genetic modification characterization ENCFF016KRJ bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF643CGH, ENCFF936LDI 4724238592 ENCODE Processing Pipeline f8697a3f8718ebb15e9d8f2231f2e9ae https://www.encodeproject.org/files/ENCFF016KRJ/@@download/ENCFF016KRJ.bam GRCh38 released ENCFF880SVB bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF643CGH, ENCFF738CWY 5121163613 ENCODE Processing Pipeline e2dac7da1d99ca5560778b56c01c5c89 https://www.encodeproject.org/files/ENCFF880SVB/@@download/ENCFF880SVB.bam GRCh38 released ENCFF548AHK bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF643CGH 5623323262 ENCODE Processing Pipeline 00dc0f654a02a86421b779c607fff0b3 https://www.encodeproject.org/files/ENCFF548AHK/@@download/ENCFF548AHK.bam GRCh38 released ENCFF995UTD bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF643CGH, ENCFF909ZLD 5374974688 ENCODE Processing Pipeline 8ec98c581f861ae499a7c3cbd9c04557 https://www.encodeproject.org/files/ENCFF995UTD/@@download/ENCFF995UTD.bam GRCh38 released ENCFF623YPH bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF643CGH 1105625527 ENCODE Processing Pipeline b6a511acf45adaea89a41a162c94e068 https://www.encodeproject.org/files/ENCFF623YPH/@@download/ENCFF623YPH.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF106BHY bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF643CGH, ENCFF678JFY 1416696061 ENCODE Processing Pipeline 1a62b40588cea4dd3df8f26e612510b6 https://www.encodeproject.org/files/ENCFF106BHY/@@download/ENCFF106BHY.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF478RXX bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF643CGH 654512157 ENCODE Processing Pipeline 45f3213fd8aceb34bb3dd296e0562d90 https://www.encodeproject.org/files/ENCFF478RXX/@@download/ENCFF478RXX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF110WTS bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF693ECZ 556099988 ENCODE Processing Pipeline 871c6ebc932a7f3a0c333924d83d41ba https://www.encodeproject.org/files/ENCFF110WTS/@@download/ENCFF110WTS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF475YAS bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF643CGH 1023738747 ENCODE Processing Pipeline 80e072d04e32d74e896a01354abfca6c https://www.encodeproject.org/files/ENCFF475YAS/@@download/ENCFF475YAS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF168KFH bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF643CGH 1208466148 ENCODE Processing Pipeline 7988062d5124fc1cc1cb2e6ef7783485 https://www.encodeproject.org/files/ENCFF168KFH/@@download/ENCFF168KFH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF319BJC bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF643CGH, ENCFF822SMI 928585355 ENCODE Processing Pipeline 0593b9b4a4d419f0b9baaa4d2985698b https://www.encodeproject.org/files/ENCFF319BJC/@@download/ENCFF319BJC.bam GRCh38 released borderline replicate concordance, low read depth ENCFF340QRX bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF643CGH, ENCFF813TPE 1624077843 ENCODE Processing Pipeline 13f49284e055ce3cde8e53017028b6ee https://www.encodeproject.org/files/ENCFF340QRX/@@download/ENCFF340QRX.bam GRCh38 released borderline replicate concordance, low read depth ENCFF300AUR bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 100 ENCFF055XKT, ENCFF643CGH, ENCFF968UUM 7854969982 ENCODE Processing Pipeline fdb3b060053582b8198bd3619262199e https://www.encodeproject.org/files/ENCFF300AUR/@@download/ENCFF300AUR.bam GRCh38 released missing genetic modification characterization ENCFF996AFH bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 100 ENCFF123LEB, ENCFF229NRD, ENCFF643CGH 8812012236 ENCODE Processing Pipeline f84bd2a367445b3d27b5011ee01321cc https://www.encodeproject.org/files/ENCFF996AFH/@@download/ENCFF996AFH.bam GRCh38 released missing genetic modification characterization ENCFF564KCD bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF643CGH 754403095 ENCODE Processing Pipeline 5d0c9bea684814459d75f3b33609208e https://www.encodeproject.org/files/ENCFF564KCD/@@download/ENCFF564KCD.bam GRCh38 released low read depth, moderate library complexity ENCFF207NLX bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF643CGH 717958307 ENCODE Processing Pipeline 6a1b6a04f9a88695bf844b4e96438ddb https://www.encodeproject.org/files/ENCFF207NLX/@@download/ENCFF207NLX.bam GRCh38 released low read depth, moderate library complexity ENCFF122VCH bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF643CGH 763401977 ENCODE Processing Pipeline 033aab42fa144b50216773ac077250a0 https://www.encodeproject.org/files/ENCFF122VCH/@@download/ENCFF122VCH.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF591JSM bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF643CGH, ENCFF898YVQ 953123176 ENCODE Processing Pipeline 8f8ad10ad22a6bf5105768f6dd6d2fc4 https://www.encodeproject.org/files/ENCFF591JSM/@@download/ENCFF591JSM.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF127DWU bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF862QDQ 768707575 ENCODE Processing Pipeline ab554e2454afe47ba208a1a45fa727f0 https://www.encodeproject.org/files/ENCFF127DWU/@@download/ENCFF127DWU.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF890TFD bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF643CGH 1065261651 ENCODE Processing Pipeline dde22eb23ff7454fe954b5ee07381ddf https://www.encodeproject.org/files/ENCFF890TFD/@@download/ENCFF890TFD.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF233KNQ bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF643CGH 638863160 ENCODE Processing Pipeline 1ab5e52241b8b2af7918e6f1f059a7c6 https://www.encodeproject.org/files/ENCFF233KNQ/@@download/ENCFF233KNQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF490SKM bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF643CGH 1311917228 ENCODE Processing Pipeline 0c4946d8815afb610add8a93c401ef58 https://www.encodeproject.org/files/ENCFF490SKM/@@download/ENCFF490SKM.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF361SFX bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF705KCW 920599975 ENCODE Processing Pipeline 4fb5b999b14415dbbe5865694340a901 https://www.encodeproject.org/files/ENCFF361SFX/@@download/ENCFF361SFX.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF932FED bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF643CGH 1494543350 ENCODE Processing Pipeline 908e915397dfd70c8d68e45e30a8ae7c https://www.encodeproject.org/files/ENCFF932FED/@@download/ENCFF932FED.bam GRCh38 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF688NWX bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF045UOH, ENCFF643CGH 537930120 ENCODE Processing Pipeline 13ab622384a140201e43f51e6e292b50 https://www.encodeproject.org/files/ENCFF688NWX/@@download/ENCFF688NWX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF332KBI bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF468UEL, ENCFF643CGH 649009623 ENCODE Processing Pipeline 70c766fbaad3d0bb653300a673b7e2d3 https://www.encodeproject.org/files/ENCFF332KBI/@@download/ENCFF332KBI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF250ZEU bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF643CGH 1915484676 ENCODE Processing Pipeline b7ae9f6d4848a17cc9728681878dd7f5 https://www.encodeproject.org/files/ENCFF250ZEU/@@download/ENCFF250ZEU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF789XWO bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF643CGH 1258849045 ENCODE Processing Pipeline ee209c30b70729344d0ae9eab4d775f1 https://www.encodeproject.org/files/ENCFF789XWO/@@download/ENCFF789XWO.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF803TYM bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF643CGH 3236115782 ENCODE Processing Pipeline 2588f1603f43277f7ae16b1471fbff3d https://www.encodeproject.org/files/ENCFF803TYM/@@download/ENCFF803TYM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF698VVG bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF643CGH, ENCFF756SRO 3533870594 ENCODE Processing Pipeline 63f416f989a93e24f359aca7577a4f5e https://www.encodeproject.org/files/ENCFF698VVG/@@download/ENCFF698VVG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF953GQZ bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085NFE, ENCFF214JGI, ENCFF643CGH 4262536430 ENCODE Processing Pipeline e1e047fde4ac1b380909a9d291f34895 https://www.encodeproject.org/files/ENCFF953GQZ/@@download/ENCFF953GQZ.bam GRCh38 released ENCFF266ROF bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF099ZTK, ENCFF643CGH, ENCFF684TOL 4415441191 ENCODE Processing Pipeline 2904dc84206784bb6e877d397aa0419d https://www.encodeproject.org/files/ENCFF266ROF/@@download/ENCFF266ROF.bam GRCh38 released ENCFF578UPT bam alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF643CGH 4034724652 ENCODE Processing Pipeline 6e04af2292cd1781ea3d0b2041b800ee https://www.encodeproject.org/files/ENCFF578UPT/@@download/ENCFF578UPT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF076LAL bam alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF782COM, ENCFF934TSI 3944951342 ENCODE Processing Pipeline a25df450c58af9f7decff2012ea67af5 https://www.encodeproject.org/files/ENCFF076LAL/@@download/ENCFF076LAL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF696RXB bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF643CGH 4290671027 ENCODE Processing Pipeline 3c951338b7b405f8c859f425fefebebc https://www.encodeproject.org/files/ENCFF696RXB/@@download/ENCFF696RXB.bam GRCh38 released borderline replicate concordance ENCFF455ZKM bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF643CGH, ENCFF748NXL 6820674517 ENCODE Processing Pipeline 02ee6cc7e1a5652569ab4c4c81be4f65 https://www.encodeproject.org/files/ENCFF455ZKM/@@download/ENCFF455ZKM.bam GRCh38 released borderline replicate concordance ENCFF721HMO bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF643CGH 2954895614 ENCODE Processing Pipeline 10354562fd5daa0d4b8435126dc87a03 https://www.encodeproject.org/files/ENCFF721HMO/@@download/ENCFF721HMO.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF309ZZR bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF643CGH 5497021013 ENCODE Processing Pipeline 14596a3be35b2abd597c6a62cdf53f29 https://www.encodeproject.org/files/ENCFF309ZZR/@@download/ENCFF309ZZR.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF828CLY bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 50 ENCFF643CGH, ENCFF779OCL 1075842115 ENCODE Processing Pipeline 0af039656b846dbe1def5918648cb422 https://www.encodeproject.org/files/ENCFF828CLY/@@download/ENCFF828CLY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF731XGM bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 50 ENCFF070RQL, ENCFF643CGH 1820272717 ENCODE Processing Pipeline bebd0f9a2c6fb316cab291f32f27e43b https://www.encodeproject.org/files/ENCFF731XGM/@@download/ENCFF731XGM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF970KZJ bam alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF643CGH, ENCFF937YTY 4536317454 ENCODE Processing Pipeline 27fe38bb2d46eacea1967af61ec54edd https://www.encodeproject.org/files/ENCFF970KZJ/@@download/ENCFF970KZJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF938FQC bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 100 ENCFF497JNW, ENCFF643CGH, ENCFF842CFV 2952154493 ENCODE Processing Pipeline b3f5828305f72d5a0bf313bc402978ef https://www.encodeproject.org/files/ENCFF938FQC/@@download/ENCFF938FQC.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF327XSI bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 100 ENCFF311SGU, ENCFF643CGH, ENCFF647KQT 3547651072 ENCODE Processing Pipeline 4aeb2bba2f62dfbdba6339f83e7c98b3 https://www.encodeproject.org/files/ENCFF327XSI/@@download/ENCFF327XSI.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF015UIX bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF643CGH 3472577277 ENCODE Processing Pipeline 9f6ac174c3575ab5906bc9d2f048e4df https://www.encodeproject.org/files/ENCFF015UIX/@@download/ENCFF015UIX.bam GRCh38 released low read depth ENCFF587HZM bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF643CGH, ENCFF829JEX 3729985722 ENCODE Processing Pipeline 1f45eb4a678d29aa3b2a3d32e045d1e4 https://www.encodeproject.org/files/ENCFF587HZM/@@download/ENCFF587HZM.bam GRCh38 released low read depth ENCFF915HOY bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF643CGH 920463653 ENCODE Processing Pipeline 9d1d10a512bcaefeacb251f0b3473659 https://www.encodeproject.org/files/ENCFF915HOY/@@download/ENCFF915HOY.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF529HAI bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF643CGH 828956493 ENCODE Processing Pipeline 2b8324193348f06cb6af2ebb487bb4bd https://www.encodeproject.org/files/ENCFF529HAI/@@download/ENCFF529HAI.bam GRCh38 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF045LKN bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF643CGH 1310174525 ENCODE Processing Pipeline c77f74dda12b009afa916078159342aa https://www.encodeproject.org/files/ENCFF045LKN/@@download/ENCFF045LKN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF742QEL bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF643CGH 1744150805 ENCODE Processing Pipeline e43ce9b6791795a1b1ecde755295406d https://www.encodeproject.org/files/ENCFF742QEL/@@download/ENCFF742QEL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603ARU bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF643CGH 1136997453 ENCODE Processing Pipeline de44f3b4a2356429d97b3492f7573225 https://www.encodeproject.org/files/ENCFF603ARU/@@download/ENCFF603ARU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF239NEJ bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF643CGH 1407433315 ENCODE Processing Pipeline 68c73b0939a5ef773b27ef60037290e2 https://www.encodeproject.org/files/ENCFF239NEJ/@@download/ENCFF239NEJ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF903NKV bam alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF106TQC, ENCFF643CGH, ENCFF774SIF 5699938908 ENCODE Processing Pipeline ec764d52130a6d54a84e62279eb4faa7 https://www.encodeproject.org/files/ENCFF903NKV/@@download/ENCFF903NKV.bam GRCh38 released antibody characterized with exemption ENCFF780OIC bam alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF372GPW, ENCFF643CGH, ENCFF881VQU 3982291322 ENCODE Processing Pipeline c5b8dedcc228560d35ef175f05ef1b34 https://www.encodeproject.org/files/ENCFF780OIC/@@download/ENCFF780OIC.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF696XHK bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF643CGH 4295245822 ENCODE Processing Pipeline 6a0d2ac5cc611c35b41755ad701c9105 https://www.encodeproject.org/files/ENCFF696XHK/@@download/ENCFF696XHK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF473ZIB bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF681BWM, ENCFF909TNH 5319674078 ENCODE Processing Pipeline f1c97bd7a04146d5c8acfe72a64370ca https://www.encodeproject.org/files/ENCFF473ZIB/@@download/ENCFF473ZIB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF072KEJ bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF643CGH 3320931923 ENCODE Processing Pipeline e6cb9fa4c68ecc8dc2c6fb9e23d74d82 https://www.encodeproject.org/files/ENCFF072KEJ/@@download/ENCFF072KEJ.bam GRCh38 released low read depth ENCFF033JFM bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF643CGH, ENCFF714KWX 2931511017 ENCODE Processing Pipeline 3a4540f9e0b9d8f043c821129614407b https://www.encodeproject.org/files/ENCFF033JFM/@@download/ENCFF033JFM.bam GRCh38 released low read depth ENCFF910WTA bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF643ZXX 1657720016 ENCODE Processing Pipeline 0748ebac4e559c788a408c941866df76 https://www.encodeproject.org/files/ENCFF910WTA/@@download/ENCFF910WTA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF445BCF bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF643CGH 1730247156 ENCODE Processing Pipeline 9b2af97658610f11ddb29ba096e0851b https://www.encodeproject.org/files/ENCFF445BCF/@@download/ENCFF445BCF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF960WSN bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF643CGH 5023509142 ENCODE Processing Pipeline 6421c53785ac185bc299361bd511de27 https://www.encodeproject.org/files/ENCFF960WSN/@@download/ENCFF960WSN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF913BSN bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF643CGH 3394892754 ENCODE Processing Pipeline bb85413721da7a4c81f9d82c03067543 https://www.encodeproject.org/files/ENCFF913BSN/@@download/ENCFF913BSN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF856JMS bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF643CGH 830961091 ENCODE Processing Pipeline 743a21927acc1c12fb344c8a9a692448 https://www.encodeproject.org/files/ENCFF856JMS/@@download/ENCFF856JMS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF692CNT bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF643CGH, ENCFF680CYZ 1243752155 ENCODE Processing Pipeline f09282d8748b5986755ca530f4869d46 https://www.encodeproject.org/files/ENCFF692CNT/@@download/ENCFF692CNT.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF072JHV bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF643VJS, ENCFF961ECZ 4394718202 ENCODE Processing Pipeline 5e78fb113c2cb23d91d71547fa60214f https://www.encodeproject.org/files/ENCFF072JHV/@@download/ENCFF072JHV.bam GRCh38 released ENCFF948EKK bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF643CGH 5129845068 ENCODE Processing Pipeline aa7a8d79865694c9b8b12fbab4d8c397 https://www.encodeproject.org/files/ENCFF948EKK/@@download/ENCFF948EKK.bam GRCh38 released ENCFF459VZA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF689WAA 1242049797 ENCODE Processing Pipeline eb1b076968d84e1b8aa8fb30479624a4 https://www.encodeproject.org/files/ENCFF459VZA/@@download/ENCFF459VZA.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF896BMA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF972ZUD 1350650959 ENCODE Processing Pipeline cc86e2283e0fd4914c9c42a236079383 https://www.encodeproject.org/files/ENCFF896BMA/@@download/ENCFF896BMA.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF657TZQ bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF643CGH, ENCFF941CCE 5193671450 ENCODE Processing Pipeline 6dd331011c677fe339958c39192cafbd https://www.encodeproject.org/files/ENCFF657TZQ/@@download/ENCFF657TZQ.bam GRCh38 released antibody characterized with exemption ENCFF738AVH bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF643CGH, ENCFF710ZBC 5228373859 ENCODE Processing Pipeline c1b8bc6a8900399656dc422f69f46fa7 https://www.encodeproject.org/files/ENCFF738AVH/@@download/ENCFF738AVH.bam GRCh38 released antibody characterized with exemption ENCFF449ZQR bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF643CGH 1268211309 ENCODE Processing Pipeline d377537bdb65574389b333c5208fe346 https://www.encodeproject.org/files/ENCFF449ZQR/@@download/ENCFF449ZQR.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF651NEA bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF643CGH, ENCFF804ROV 1386357580 ENCODE Processing Pipeline da6e91a3a5a5496db27e980a851821c6 https://www.encodeproject.org/files/ENCFF651NEA/@@download/ENCFF651NEA.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF022LJH bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF643CGH 6238605838 ENCODE Processing Pipeline 83f796f0789f223986efa3fb6b340567 https://www.encodeproject.org/files/ENCFF022LJH/@@download/ENCFF022LJH.bam GRCh38 released mild to moderate bottlenecking ENCFF508MVS bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF643CGH 6822072754 ENCODE Processing Pipeline 430b6b4a27b86a564413df24f76a4db2 https://www.encodeproject.org/files/ENCFF508MVS/@@download/ENCFF508MVS.bam GRCh38 released mild to moderate bottlenecking ENCFF995XZH bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF670UOV, ENCFF841OOC 3450086582 ENCODE Processing Pipeline f13fd3791ee5bc7302511dbb116b3fb7 https://www.encodeproject.org/files/ENCFF995XZH/@@download/ENCFF995XZH.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF877RVZ bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF643CGH, ENCFF674GQJ 3562573023 ENCODE Processing Pipeline 37d2259cbdcd802eef322b188bdcdea1 https://www.encodeproject.org/files/ENCFF877RVZ/@@download/ENCFF877RVZ.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF550RLX bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF643CGH 664892396 ENCODE Processing Pipeline ada4f8845b3e64771c49740ca232a28f https://www.encodeproject.org/files/ENCFF550RLX/@@download/ENCFF550RLX.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF686NVV bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF769ICW 1199170132 ENCODE Processing Pipeline 123419aaa1fcd34c90a241bf9d8fcf7b https://www.encodeproject.org/files/ENCFF686NVV/@@download/ENCFF686NVV.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF564CXM bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF643CGH 4394573976 ENCODE Processing Pipeline c6a3a7c490d60a8995709d5f9f9cc216 https://www.encodeproject.org/files/ENCFF564CXM/@@download/ENCFF564CXM.bam GRCh38 released mild to moderate bottlenecking ENCFF722LJA bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF643CGH 4804881345 ENCODE Processing Pipeline 76270d2182112cd6a4950e4f0a68ba57 https://www.encodeproject.org/files/ENCFF722LJA/@@download/ENCFF722LJA.bam GRCh38 released mild to moderate bottlenecking ENCFF210CWN bam alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF643CGH 2586302527 ENCODE Processing Pipeline 15b1d1966f32f73388282d6d99c13999 https://www.encodeproject.org/files/ENCFF210CWN/@@download/ENCFF210CWN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF510CLQ bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF643CGH 1117078329 ENCODE Processing Pipeline 57ddcb06dfd4666d2197f2c485345ac2 https://www.encodeproject.org/files/ENCFF510CLQ/@@download/ENCFF510CLQ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF229DGU bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF966WHJ 2480532482 ENCODE Processing Pipeline 097cd76ae3ae654efa402930948372f2 https://www.encodeproject.org/files/ENCFF229DGU/@@download/ENCFF229DGU.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF330KYG bam alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF643CGH 4722549765 ENCODE Processing Pipeline 5c858cfc4e2280f37745c20d56d2c69b https://www.encodeproject.org/files/ENCFF330KYG/@@download/ENCFF330KYG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF809HJM bam alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014DFT, ENCFF643CGH, ENCFF699OSQ 5683005283 ENCODE Processing Pipeline c326ecd9ab6b32ddd303bf5595a44953 https://www.encodeproject.org/files/ENCFF809HJM/@@download/ENCFF809HJM.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF397LNB bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF643CGH, ENCFF854CCC, ENCFF881JDL 3349420446 ENCODE Processing Pipeline 9fc8ef3a1c0043612a0c4a9c2edba69b https://www.encodeproject.org/files/ENCFF397LNB/@@download/ENCFF397LNB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF700WSI bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF643CGH 5489300678 ENCODE Processing Pipeline 3a013ccf59abd959b6eec94e204bdddd https://www.encodeproject.org/files/ENCFF700WSI/@@download/ENCFF700WSI.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF420DGT bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF643CGH 4205404276 ENCODE Processing Pipeline b0207a286b8ff143359bd0446664dbba https://www.encodeproject.org/files/ENCFF420DGT/@@download/ENCFF420DGT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF129RYE bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF643CGH 5996078376 ENCODE Processing Pipeline 680900c76caebd025ca8223851016d7b https://www.encodeproject.org/files/ENCFF129RYE/@@download/ENCFF129RYE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF274DDB bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF643CGH, ENCFF919EOD, ENCFF956SSU 3693595739 ENCODE Processing Pipeline c59076fd8f12a21201f2707aa2311625 https://www.encodeproject.org/files/ENCFF274DDB/@@download/ENCFF274DDB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF954MFY bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF643CGH 3649215100 ENCODE Processing Pipeline 24c24465abbd41e1058c983615a585a7 https://www.encodeproject.org/files/ENCFF954MFY/@@download/ENCFF954MFY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF196CKN bam alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF643CGH 3238218842 ENCODE Processing Pipeline 5e02b7c0509960be2113abacffcdd640 https://www.encodeproject.org/files/ENCFF196CKN/@@download/ENCFF196CKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF764EWY bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF643CGH 5423703397 ENCODE Processing Pipeline c5600086ec9c8f22ddbfc80220da7478 https://www.encodeproject.org/files/ENCFF764EWY/@@download/ENCFF764EWY.bam GRCh38 released mild to moderate bottlenecking ENCFF258WGM bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF643CGH, ENCFF845QUV 5285337052 ENCODE Processing Pipeline 5839cd4afcb03f5f826821374802e658 https://www.encodeproject.org/files/ENCFF258WGM/@@download/ENCFF258WGM.bam GRCh38 released mild to moderate bottlenecking ENCFF448PRG bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF643CGH 1861597559 ENCODE Processing Pipeline cc788199cc108b785c18a8cc6611070c https://www.encodeproject.org/files/ENCFF448PRG/@@download/ENCFF448PRG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428YKP bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF643CGH 1783537266 ENCODE Processing Pipeline 6ed7d8bf795e34ac8acb8a607f9917fc https://www.encodeproject.org/files/ENCFF428YKP/@@download/ENCFF428YKP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF310XPD bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF643CGH, ENCFF737EQI 3416000228 ENCODE Processing Pipeline 55e6533c3b02ab49dbf2df3f20398c5f https://www.encodeproject.org/files/ENCFF310XPD/@@download/ENCFF310XPD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF473BZX bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF643CGH, ENCFF993LLQ 9026489866 ENCODE Processing Pipeline 1e75209fdcca9638382b1dd287e8b4a5 https://www.encodeproject.org/files/ENCFF473BZX/@@download/ENCFF473BZX.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF596BCZ bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF643CGH 978845127 ENCODE Processing Pipeline 3674f191d445bc3e4a5cf865719800a4 https://www.encodeproject.org/files/ENCFF596BCZ/@@download/ENCFF596BCZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF091YVC bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF643CGH 1027036560 ENCODE Processing Pipeline 78021f729889e824d12bd0a51f6c0c93 https://www.encodeproject.org/files/ENCFF091YVC/@@download/ENCFF091YVC.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF028MMF bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF643CGH 771027834 ENCODE Processing Pipeline 0bbebbfd6dd72afabe71b4e618187aad https://www.encodeproject.org/files/ENCFF028MMF/@@download/ENCFF028MMF.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF198OIE bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF643CGH 1940925224 ENCODE Processing Pipeline ec0eeeaa308c4d4089d8e99fe0ceb57d https://www.encodeproject.org/files/ENCFF198OIE/@@download/ENCFF198OIE.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF174ZGG bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF643CGH 805226909 ENCODE Processing Pipeline eeb21cadcc151a064ac5e3b993efca89 https://www.encodeproject.org/files/ENCFF174ZGG/@@download/ENCFF174ZGG.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF995SEN bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF643CGH 723446775 ENCODE Processing Pipeline 4ea8a7f2403fc6917d81b7154acf6bf7 https://www.encodeproject.org/files/ENCFF995SEN/@@download/ENCFF995SEN.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF334WLO bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF643CGH 1194271411 ENCODE Processing Pipeline dbe5b6d61f4ac9c3ec56f07235b9d521 https://www.encodeproject.org/files/ENCFF334WLO/@@download/ENCFF334WLO.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF761PTZ bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF643CGH 1273941598 ENCODE Processing Pipeline a26c956b944751d0205ea2f2763506b8 https://www.encodeproject.org/files/ENCFF761PTZ/@@download/ENCFF761PTZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF891QYX bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF643CGH 1111303265 ENCODE Processing Pipeline de8403dcb4e07d5e59e0ed83dffad87b https://www.encodeproject.org/files/ENCFF891QYX/@@download/ENCFF891QYX.bam GRCh38 released low read depth ENCFF814XON bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF643CGH 1166104741 ENCODE Processing Pipeline d52737598171775eb1be1c42478a40b1 https://www.encodeproject.org/files/ENCFF814XON/@@download/ENCFF814XON.bam GRCh38 released low read depth ENCFF364HTM bam alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF643CGH, ENCFF950ZNN 2994402378 ENCODE Processing Pipeline 93e6da5441393fdce1e87ba3fc4c6f8e https://www.encodeproject.org/files/ENCFF364HTM/@@download/ENCFF364HTM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF329MCT bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF730YIK, ENCFF861REO 4033853337 ENCODE Processing Pipeline a95dead3fb5a999719e2d352db197f83 https://www.encodeproject.org/files/ENCFF329MCT/@@download/ENCFF329MCT.bam GRCh38 released antibody characterized with exemption ENCFF872TUO bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF643CGH, ENCFF865YPR 4464825655 ENCODE Processing Pipeline c17bc1635ed0701191c267a011d302fc https://www.encodeproject.org/files/ENCFF872TUO/@@download/ENCFF872TUO.bam GRCh38 released antibody characterized with exemption ENCFF719XQY bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF643CGH 1164666225 ENCODE Processing Pipeline 0ee35c3100317ca2d4f4748598942809 https://www.encodeproject.org/files/ENCFF719XQY/@@download/ENCFF719XQY.bam GRCh38 released borderline replicate concordance, low read depth ENCFF544DDY bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF643CGH 1309680764 ENCODE Processing Pipeline 006db9dee42877afdf16dce0c20a5efc https://www.encodeproject.org/files/ENCFF544DDY/@@download/ENCFF544DDY.bam GRCh38 released borderline replicate concordance, low read depth ENCFF262QYO bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF643CGH 1494605253 ENCODE Processing Pipeline a63be7bbf442acec46a230e7d72f9408 https://www.encodeproject.org/files/ENCFF262QYO/@@download/ENCFF262QYO.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF833GRI bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF643CGH 1787724773 ENCODE Processing Pipeline 6148e0245bce5651ccb4fad79dd78d88 https://www.encodeproject.org/files/ENCFF833GRI/@@download/ENCFF833GRI.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF022LUZ bam alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF643CGH, ENCFF646RMM, ENCFF991PJC 4827625641 ENCODE Processing Pipeline c9f0c5514cba2b40cdb6c759c72ce573 https://www.encodeproject.org/files/ENCFF022LUZ/@@download/ENCFF022LUZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF738UWF bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF643CGH 1761292029 ENCODE Processing Pipeline f60de6ac36f83acbdb5ff9a6f1f97a4d https://www.encodeproject.org/files/ENCFF738UWF/@@download/ENCFF738UWF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF268WQR bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF643CGH 2026785858 ENCODE Processing Pipeline 526b055bd519c564b6f3c9e26ddde245 https://www.encodeproject.org/files/ENCFF268WQR/@@download/ENCFF268WQR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF801LQC bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF643CGH 6154385409 ENCODE Processing Pipeline c068f6694bd63cf7cf0b7435f23b74fe https://www.encodeproject.org/files/ENCFF801LQC/@@download/ENCFF801LQC.bam GRCh38 released missing genetic modification characterization ENCFF092XPV bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF643CGH 7309611198 ENCODE Processing Pipeline 06413cd52bc0f19f74634418447cf64b https://www.encodeproject.org/files/ENCFF092XPV/@@download/ENCFF092XPV.bam GRCh38 released missing genetic modification characterization ENCFF862DYV bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF643CGH, ENCFF993ZKD 4701891822 ENCODE Processing Pipeline 0d5c36706088b1ce83419b0b71bfc2b0 https://www.encodeproject.org/files/ENCFF862DYV/@@download/ENCFF862DYV.bam GRCh38 released antibody characterized with exemption ENCFF343FIG bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF643CGH 5626494384 ENCODE Processing Pipeline ceab3c9ee774ba4b5704e8880ad30d5c https://www.encodeproject.org/files/ENCFF343FIG/@@download/ENCFF343FIG.bam GRCh38 released antibody characterized with exemption ENCFF228ZGU bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF643CGH, ENCFF845RNP 5038148705 ENCODE Processing Pipeline 23a5996701ebc760a1199ce9851ce624 https://www.encodeproject.org/files/ENCFF228ZGU/@@download/ENCFF228ZGU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF106TAT bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF643CGH 9877696813 ENCODE Processing Pipeline 0da039e2da99715563e68d55bb7529b1 https://www.encodeproject.org/files/ENCFF106TAT/@@download/ENCFF106TAT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF219RUS bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF643CGH 4621651948 ENCODE Processing Pipeline badc9ba75f8451fbe22af6fe0a484922 https://www.encodeproject.org/files/ENCFF219RUS/@@download/ENCFF219RUS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF686YXQ bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF643CGH, ENCFF901MLH 5836326124 ENCODE Processing Pipeline 5a192b00a0599c4d74a4c2f7603e4a2e https://www.encodeproject.org/files/ENCFF686YXQ/@@download/ENCFF686YXQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF431XUQ bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF643CGH 1138828617 ENCODE Processing Pipeline db178e0d8dd1eb4470e8f6251e0a6ae0 https://www.encodeproject.org/files/ENCFF431XUQ/@@download/ENCFF431XUQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF847EMM bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF643CGH 1124266267 ENCODE Processing Pipeline 1d4b185eb44c70d0fbc3b32d0048dbdb https://www.encodeproject.org/files/ENCFF847EMM/@@download/ENCFF847EMM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF577SKC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF643CGH, ENCFF907HHY 4691944629 ENCODE Processing Pipeline ad07f54fd39ab8dc1ff19325b0df71c3 https://www.encodeproject.org/files/ENCFF577SKC/@@download/ENCFF577SKC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF252GCC bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF643CGH, ENCFF870NUU 4038531531 ENCODE Processing Pipeline 3b9e01759834231190af49b23416472a https://www.encodeproject.org/files/ENCFF252GCC/@@download/ENCFF252GCC.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF553ZKD bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF643CGH 866730120 ENCODE Processing Pipeline e648f715cf070de8971f2101fb5ee499 https://www.encodeproject.org/files/ENCFF553ZKD/@@download/ENCFF553ZKD.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF350GBI bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF643CGH 969824559 ENCODE Processing Pipeline 39fb01c466c2df31ef1da18d091f178e https://www.encodeproject.org/files/ENCFF350GBI/@@download/ENCFF350GBI.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF880OFW bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF643CGH 1542873046 ENCODE Processing Pipeline 02951a20c312ee4fda075e1e52a541ec https://www.encodeproject.org/files/ENCFF880OFW/@@download/ENCFF880OFW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF980FYC bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF643CGH 2145487394 ENCODE Processing Pipeline 72ab9a7a3fa26b276ebbd69ffc99e6ff https://www.encodeproject.org/files/ENCFF980FYC/@@download/ENCFF980FYC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF037WYA bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF643CGH, ENCFF847AWQ 3651354002 ENCODE Processing Pipeline 9856eee64a54639925fa64f1f5f779e8 https://www.encodeproject.org/files/ENCFF037WYA/@@download/ENCFF037WYA.bam GRCh38 released antibody characterized with exemption ENCFF745LPJ bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF643CGH, ENCFF998JJX 4251741481 ENCODE Processing Pipeline 7eb2f162a1c1296a2d50276e316383b8 https://www.encodeproject.org/files/ENCFF745LPJ/@@download/ENCFF745LPJ.bam GRCh38 released antibody characterized with exemption ENCFF879CUM bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643CGH, ENCFF768KAE 1943705307 ENCODE Processing Pipeline d711f398ddf4e9e6bd197a7dcbbda6a9 https://www.encodeproject.org/files/ENCFF879CUM/@@download/ENCFF879CUM.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF207GHC bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF643CGH 2065635913 ENCODE Processing Pipeline 49f71b47d98cf2c8795fa87303644465 https://www.encodeproject.org/files/ENCFF207GHC/@@download/ENCFF207GHC.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF290GQR bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF784EQQ 1711479022 ENCODE Processing Pipeline 4bff585d0d380d3dd1a4b27cea964fa6 https://www.encodeproject.org/files/ENCFF290GQR/@@download/ENCFF290GQR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF109RLL bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF908GXH 1795598977 ENCODE Processing Pipeline 0d812476bf5d5c717d998f693d758b21 https://www.encodeproject.org/files/ENCFF109RLL/@@download/ENCFF109RLL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF778KCK bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF643CGH 3498011102 ENCODE Processing Pipeline aa08eeacd3bac6e32d02a96601bb6a2c https://www.encodeproject.org/files/ENCFF778KCK/@@download/ENCFF778KCK.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF462VNN bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF643CGH 4158571398 ENCODE Processing Pipeline e4138e68d5823438f0cbbf94580ad865 https://www.encodeproject.org/files/ENCFF462VNN/@@download/ENCFF462VNN.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF088RTW bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF643CGH 1300735578 ENCODE Processing Pipeline 9fbca789b484a329bab1a78072441688 https://www.encodeproject.org/files/ENCFF088RTW/@@download/ENCFF088RTW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF894JTR bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF772XOL 1741304919 ENCODE Processing Pipeline 4fe1c5f3c9a07fd3834195ebfd623e64 https://www.encodeproject.org/files/ENCFF894JTR/@@download/ENCFF894JTR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF372XYO bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF753ADO 1642464166 ENCODE Processing Pipeline 7e23e159a8fd443d6a7f12f97bf24aa0 https://www.encodeproject.org/files/ENCFF372XYO/@@download/ENCFF372XYO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF453XVL bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF643CGH 2717160667 ENCODE Processing Pipeline 9bf815839e7058557d22465cb84d4bde https://www.encodeproject.org/files/ENCFF453XVL/@@download/ENCFF453XVL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF680KUB bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF643CGH 841330804 ENCODE Processing Pipeline e274afe97bacb1f00d005d4247697cb0 https://www.encodeproject.org/files/ENCFF680KUB/@@download/ENCFF680KUB.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF757TIT bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF643CGH 811445298 ENCODE Processing Pipeline c6d9725640693da9c93fdcc0c18ac1a0 https://www.encodeproject.org/files/ENCFF757TIT/@@download/ENCFF757TIT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF553QXD bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF643CGH 2049119246 ENCODE Processing Pipeline b2c4e4b96d2a406d2727378dab18203b https://www.encodeproject.org/files/ENCFF553QXD/@@download/ENCFF553QXD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF685WAA bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF643CGH 1928675958 ENCODE Processing Pipeline a6b18b2a64a7a2d86736475b1f301c4b https://www.encodeproject.org/files/ENCFF685WAA/@@download/ENCFF685WAA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF436OMA bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF643CGH 1684344808 ENCODE Processing Pipeline ca9e29e564fc5bffbbe355fc1bc08f8a https://www.encodeproject.org/files/ENCFF436OMA/@@download/ENCFF436OMA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF123DYP bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF714SGI 1652015010 ENCODE Processing Pipeline c46c03a40ce71142800814c2b861b8c9 https://www.encodeproject.org/files/ENCFF123DYP/@@download/ENCFF123DYP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF809BGD bam alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF643CGH 2983924444 ENCODE Processing Pipeline f2711fa86aa72f4cd9c3d2e7d6fad5b0 https://www.encodeproject.org/files/ENCFF809BGD/@@download/ENCFF809BGD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF810AAT bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF490CEX, ENCFF643CGH 1349864211 ENCODE Processing Pipeline c9ff43eaaf89ef29b1c7eb8e8c7fd291 https://www.encodeproject.org/files/ENCFF810AAT/@@download/ENCFF810AAT.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF479GFZ bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF968PBN 1216753924 ENCODE Processing Pipeline 1f11d7cf61918649794fefcd27c6819d https://www.encodeproject.org/files/ENCFF479GFZ/@@download/ENCFF479GFZ.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF979BFW bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF643CGH 509264505 ENCODE Processing Pipeline b9aead1ec3608cec4dfbf28ad19b4e37 https://www.encodeproject.org/files/ENCFF979BFW/@@download/ENCFF979BFW.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF102ZOS bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF643CGH 704106450 ENCODE Processing Pipeline e13ac285bc4f21e620cc0e3dd76bd754 https://www.encodeproject.org/files/ENCFF102ZOS/@@download/ENCFF102ZOS.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF523QZM bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF643CGH 2737923457 ENCODE Processing Pipeline a5c8fe0ae9db3f4059c8b8f2f892cba5 https://www.encodeproject.org/files/ENCFF523QZM/@@download/ENCFF523QZM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF143HRA bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF643CGH 6171626994 ENCODE Processing Pipeline c4e2d11e5668489f134866f35b421590 https://www.encodeproject.org/files/ENCFF143HRA/@@download/ENCFF143HRA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF954HWS bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF643CGH 4327733273 ENCODE Processing Pipeline 4ebdd43bf31a11b4144d18352c731b8e https://www.encodeproject.org/files/ENCFF954HWS/@@download/ENCFF954HWS.bam GRCh38 released borderline replicate concordance ENCFF124RUL bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF643CGH 5004185476 ENCODE Processing Pipeline f11feae795ee1f8be63145b6f88f0ae5 https://www.encodeproject.org/files/ENCFF124RUL/@@download/ENCFF124RUL.bam GRCh38 released borderline replicate concordance ENCFF792QOD bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF643CGH 1055170822 ENCODE Processing Pipeline 878c5cc2a14b62bf72bcb47ec9fd4320 https://www.encodeproject.org/files/ENCFF792QOD/@@download/ENCFF792QOD.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF499ZUN bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF643CGH 1443638604 ENCODE Processing Pipeline b8045b39ce3a24324116273da3bbf369 https://www.encodeproject.org/files/ENCFF499ZUN/@@download/ENCFF499ZUN.bam GRCh38 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF065WHF bam alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF643CGH 4226723898 ENCODE Processing Pipeline 903dbe98a97522c28db93f9f53d70c04 https://www.encodeproject.org/files/ENCFF065WHF/@@download/ENCFF065WHF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF136ZLW bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF643CGH 4306718847 ENCODE Processing Pipeline e0c8e8c4e25d6bb189176ce9b84a5e19 https://www.encodeproject.org/files/ENCFF136ZLW/@@download/ENCFF136ZLW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF503ISP bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF643CGH 5280185719 ENCODE Processing Pipeline 690b25d49b4f8824fc93a6a4fdf38b66 https://www.encodeproject.org/files/ENCFF503ISP/@@download/ENCFF503ISP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF433SUG bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF643CGH 849591098 ENCODE Processing Pipeline b6308a65d39629b6d698e4d8b0cb8023 https://www.encodeproject.org/files/ENCFF433SUG/@@download/ENCFF433SUG.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF461OAN bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF751GLM, ENCFF801EQE 866050158 ENCODE Processing Pipeline ef8b3b8c670a0123d610e3d0482899fb https://www.encodeproject.org/files/ENCFF461OAN/@@download/ENCFF461OAN.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF762TAN bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF643CGH 421170978 ENCODE Processing Pipeline 2a3f506ec2f6213f91ec749ae90a45ed https://www.encodeproject.org/files/ENCFF762TAN/@@download/ENCFF762TAN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF401PIJ bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF643CGH 519868699 ENCODE Processing Pipeline 509147df2e84fb66060def73d9d96afe https://www.encodeproject.org/files/ENCFF401PIJ/@@download/ENCFF401PIJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF095OEN bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF643CGH, ENCFF863YQQ 859802968 ENCODE Processing Pipeline ad7a4ed5d0a40c67bdf084940c641ca0 https://www.encodeproject.org/files/ENCFF095OEN/@@download/ENCFF095OEN.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF334BPF bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF643CGH, ENCFF922XIL 1639215325 ENCODE Processing Pipeline b89d5b07915b7a88a4bbc2f78f30925a https://www.encodeproject.org/files/ENCFF334BPF/@@download/ENCFF334BPF.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF919VWI bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF643CGH 1108223924 ENCODE Processing Pipeline 164175baa13db5fca8ebbdce17386150 https://www.encodeproject.org/files/ENCFF919VWI/@@download/ENCFF919VWI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF230UKQ bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF643CGH 1907169148 ENCODE Processing Pipeline 84e80678347d0cb1368cb14637351eef https://www.encodeproject.org/files/ENCFF230UKQ/@@download/ENCFF230UKQ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF445RPP bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF643CGH, ENCFF844LMK 954650286 ENCODE Processing Pipeline 6e7917a03c5470d6ac537f963d637fa8 https://www.encodeproject.org/files/ENCFF445RPP/@@download/ENCFF445RPP.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF655ZAY bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF643CGH 979178133 ENCODE Processing Pipeline a77a7c905e2d93aea726dfc75ebf5c32 https://www.encodeproject.org/files/ENCFF655ZAY/@@download/ENCFF655ZAY.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF695AWZ bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF643CGH 6050735920 ENCODE Processing Pipeline 4e3ba088356c70a9d893fc6f7a345eef https://www.encodeproject.org/files/ENCFF695AWZ/@@download/ENCFF695AWZ.bam GRCh38 released ENCFF557JBT bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF643CGH 5610082999 ENCODE Processing Pipeline 3d0daa54e8caaf64dbb25c2bfc9ca765 https://www.encodeproject.org/files/ENCFF557JBT/@@download/ENCFF557JBT.bam GRCh38 released ENCFF345FES bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF643CGH, ENCFF668ZNC 4004230712 ENCODE Processing Pipeline b4171cdf64b7bb2c90d9638ed99378a1 https://www.encodeproject.org/files/ENCFF345FES/@@download/ENCFF345FES.bam GRCh38 released borderline replicate concordance ENCFF988CYS bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF643CGH 3761228099 ENCODE Processing Pipeline 42ab591da3fe1e4a8f11cb3349497c73 https://www.encodeproject.org/files/ENCFF988CYS/@@download/ENCFF988CYS.bam GRCh38 released borderline replicate concordance ENCFF573OTF bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF643CGH 3729991042 ENCODE Processing Pipeline cb1d198c60137f2504bac43951158f02 https://www.encodeproject.org/files/ENCFF573OTF/@@download/ENCFF573OTF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF378UVV bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF643CGH 5030046271 ENCODE Processing Pipeline dfbf508bae9c2bfb2d316a2812fc2e45 https://www.encodeproject.org/files/ENCFF378UVV/@@download/ENCFF378UVV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF225IQS bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF643CGH, ENCFF680HKS 5739735356 ENCODE Processing Pipeline 702328efedbd5808f72bd0be2a6f7e4c https://www.encodeproject.org/files/ENCFF225IQS/@@download/ENCFF225IQS.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF431WVX bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF643CGH, ENCFF718FBA 8309162279 ENCODE Processing Pipeline 9a9cdacac615c9559f8780200efca8db https://www.encodeproject.org/files/ENCFF431WVX/@@download/ENCFF431WVX.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF879NVM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF643CGH, ENCFF836FDG 2302532918 ENCODE Processing Pipeline 44ff8b76e87263a3f073029c527c72e0 https://www.encodeproject.org/files/ENCFF879NVM/@@download/ENCFF879NVM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF009QHM bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF643CGH 2987126373 ENCODE Processing Pipeline 4ad6b9cc217ff731c228d23fca0e5378 https://www.encodeproject.org/files/ENCFF009QHM/@@download/ENCFF009QHM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF094BOF bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF643CGH 1664130757 ENCODE Processing Pipeline 96b9e216a34f1d18bbb4e94b22054212 https://www.encodeproject.org/files/ENCFF094BOF/@@download/ENCFF094BOF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF158DOO bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF643CGH 1705903223 ENCODE Processing Pipeline ec5c5a6d4c845cf34f55b816902cbae0 https://www.encodeproject.org/files/ENCFF158DOO/@@download/ENCFF158DOO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF145ZDW bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF643CGH 3267556444 ENCODE Processing Pipeline 38a76ba75ff5459d7142a578a5af50ff https://www.encodeproject.org/files/ENCFF145ZDW/@@download/ENCFF145ZDW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF831ODM bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF643CGH, ENCFF908PTR 4257559729 ENCODE Processing Pipeline b249037efa59f654d9e05f33aed0c47b https://www.encodeproject.org/files/ENCFF831ODM/@@download/ENCFF831ODM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF408BKE bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF643CGH, ENCFF896IZU 3652522465 ENCODE Processing Pipeline 6b2dedc892417ef98297cfda5aef7894 https://www.encodeproject.org/files/ENCFF408BKE/@@download/ENCFF408BKE.bam GRCh38 released mild to moderate bottlenecking ENCFF497GOO bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF643CGH, ENCFF741IHV, ENCFF990UUV 3858486275 ENCODE Processing Pipeline a75600648109539fee7f9c63943801d3 https://www.encodeproject.org/files/ENCFF497GOO/@@download/ENCFF497GOO.bam GRCh38 released mild to moderate bottlenecking ENCFF931LRP bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF643CGH 6153425914 ENCODE Processing Pipeline 624db7dcbbe084d7b34152825cbc2ea9 https://www.encodeproject.org/files/ENCFF931LRP/@@download/ENCFF931LRP.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF864YTK bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF643CGH 6490962357 ENCODE Processing Pipeline f8d4e4cb61fa8466a718476753825e54 https://www.encodeproject.org/files/ENCFF864YTK/@@download/ENCFF864YTK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF940MCJ bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF713JRT 1707087835 ENCODE Processing Pipeline f4e9a0d824e3098a4f51c2e8079ff939 https://www.encodeproject.org/files/ENCFF940MCJ/@@download/ENCFF940MCJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF557TWG bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF643CGH 1797873794 ENCODE Processing Pipeline 15fdd73d139f9fec60c5b1fb28d7a3bb https://www.encodeproject.org/files/ENCFF557TWG/@@download/ENCFF557TWG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF700ZPS bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF643CGH 1094508671 ENCODE Processing Pipeline bffc1dcc18fe208b6eed3e189c87cc82 https://www.encodeproject.org/files/ENCFF700ZPS/@@download/ENCFF700ZPS.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF731EZN bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF643CGH 1328334836 ENCODE Processing Pipeline e854bf86eebeff0f1d4d8fa32951423a https://www.encodeproject.org/files/ENCFF731EZN/@@download/ENCFF731EZN.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF267MKV bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF643CGH 1953996320 ENCODE Processing Pipeline f8ae6d21b815b0d3139f6a170ad8db10 https://www.encodeproject.org/files/ENCFF267MKV/@@download/ENCFF267MKV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF728BHH bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF643CGH 1202455121 ENCODE Processing Pipeline 5b9d63e6c3fc57213d98c95f38bd82c7 https://www.encodeproject.org/files/ENCFF728BHH/@@download/ENCFF728BHH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF686NWU bam alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF643CGH 3358648811 ENCODE Processing Pipeline 3dda5fbbbeb34aeef1ecbb359a7dc436 https://www.encodeproject.org/files/ENCFF686NWU/@@download/ENCFF686NWU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF796TBS bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF643CGH, ENCFF724EXA 3957492752 ENCODE Processing Pipeline dd120880d1b1dae18d2d291dce87c290 https://www.encodeproject.org/files/ENCFF796TBS/@@download/ENCFF796TBS.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF116HSG bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF643CGH 4204679163 ENCODE Processing Pipeline e44f5b1e6cd480e392f15e2639e24544 https://www.encodeproject.org/files/ENCFF116HSG/@@download/ENCFF116HSG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF471TDC bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF836CBD 469746382 ENCODE Processing Pipeline a221a4ee6899ee5a6eb568bc999c5c5e https://www.encodeproject.org/files/ENCFF471TDC/@@download/ENCFF471TDC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF360QAB bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF994KPK 539301646 ENCODE Processing Pipeline 911e214e9d930a83a0f70ad2086916ec https://www.encodeproject.org/files/ENCFF360QAB/@@download/ENCFF360QAB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF273QQZ bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF643CGH 1861821574 ENCODE Processing Pipeline bb0d1cdf94958a8c5ba93c84ef71f1ca https://www.encodeproject.org/files/ENCFF273QQZ/@@download/ENCFF273QQZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603ETF bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF643CGH 1771557652 ENCODE Processing Pipeline a173fce46d34f265a46328563740879a https://www.encodeproject.org/files/ENCFF603ETF/@@download/ENCFF603ETF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF028QZW bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF795MVM 1153609262 ENCODE Processing Pipeline 42e7648e0d942386f6444a3ed8cae064 https://www.encodeproject.org/files/ENCFF028QZW/@@download/ENCFF028QZW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF507NBQ bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF643CGH 1339177226 ENCODE Processing Pipeline 202f917c79bf46c2dccd66c9437f3319 https://www.encodeproject.org/files/ENCFF507NBQ/@@download/ENCFF507NBQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF733RTM bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF643CGH 784159636 ENCODE Processing Pipeline ad798f2ef29d13ec5fcee1a649af4a8d https://www.encodeproject.org/files/ENCFF733RTM/@@download/ENCFF733RTM.bam GRCh38 released low read length, low read depth ENCFF275XJW bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF738EEY 870156852 ENCODE Processing Pipeline 0f64a709f55efc378089d7cf30b052ca https://www.encodeproject.org/files/ENCFF275XJW/@@download/ENCFF275XJW.bam GRCh38 released low read length, low read depth ENCFF751UYZ bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF643CGH 1480260227 ENCODE Processing Pipeline 1e1fcce0146dd489e8356b39cd985750 https://www.encodeproject.org/files/ENCFF751UYZ/@@download/ENCFF751UYZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF406OSZ bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF643CGH 2026891576 ENCODE Processing Pipeline ce39f36ef1cb7a588d7440df9cd7557f https://www.encodeproject.org/files/ENCFF406OSZ/@@download/ENCFF406OSZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF412DRO bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF643CGH 1401333874 ENCODE Processing Pipeline ef9ef6bc208e78dd1e72f74101d4e9ca https://www.encodeproject.org/files/ENCFF412DRO/@@download/ENCFF412DRO.bam GRCh38 released antibody characterized with exemption ENCFF033UID bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF643CGH 1313034347 ENCODE Processing Pipeline bd34b869ee9a1699ed68552245fe3a0b https://www.encodeproject.org/files/ENCFF033UID/@@download/ENCFF033UID.bam GRCh38 released antibody characterized with exemption ENCFF421SOC bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF643CGH, ENCFF937RXL 836210688 ENCODE Processing Pipeline 0a4eb1a3435903903bbf7a10968cadc6 https://www.encodeproject.org/files/ENCFF421SOC/@@download/ENCFF421SOC.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF527PGM bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF643CGH 1167154433 ENCODE Processing Pipeline 4e3156af92a1265ebedd4353945b5268 https://www.encodeproject.org/files/ENCFF527PGM/@@download/ENCFF527PGM.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF728IYF bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF643CGH 413270623 ENCODE Processing Pipeline f504360768fc757cce7d062bd631cc71 https://www.encodeproject.org/files/ENCFF728IYF/@@download/ENCFF728IYF.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF874YYW bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF643CGH 272165124 ENCODE Processing Pipeline 6993a94656f7605bf97222083d85a80a https://www.encodeproject.org/files/ENCFF874YYW/@@download/ENCFF874YYW.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF205VDU bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF643CGH, ENCFF645HBN, ENCFF890KLF 2836789006 ENCODE Processing Pipeline 4054a915e0d4ae05812f9cde717f4762 https://www.encodeproject.org/files/ENCFF205VDU/@@download/ENCFF205VDU.bam GRCh38 released low read depth ENCFF109OWW bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF711HKZ, ENCFF715IBV 3610399957 ENCODE Processing Pipeline c1225de37b097c34e6200c8a14a5166e https://www.encodeproject.org/files/ENCFF109OWW/@@download/ENCFF109OWW.bam GRCh38 released low read depth ENCFF785WJN bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF643CGH 1377582799 ENCODE Processing Pipeline e923e49f41d72070978a5893e1527f68 https://www.encodeproject.org/files/ENCFF785WJN/@@download/ENCFF785WJN.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF178FQM bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF911VFY 1201205256 ENCODE Processing Pipeline 5f2b5ee9c8b65ebd63d1beba001cb941 https://www.encodeproject.org/files/ENCFF178FQM/@@download/ENCFF178FQM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF396SSG bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 74 ENCFF643CGH, ENCFF961BDT 1721337473 ENCODE Processing Pipeline 271e388bf060e5e8c52d86c278a6cb48 https://www.encodeproject.org/files/ENCFF396SSG/@@download/ENCFF396SSG.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF789JOT bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF643CGH, ENCFF831CJZ 3429686498 ENCODE Processing Pipeline 9f0fc1daa8ce7b4bc5a119c333aa3dc6 https://www.encodeproject.org/files/ENCFF789JOT/@@download/ENCFF789JOT.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF199VCV bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF643CGH, ENCFF888GKN 3935542454 ENCODE Processing Pipeline 661d97ac809fe4332828328ec7acfb5f https://www.encodeproject.org/files/ENCFF199VCV/@@download/ENCFF199VCV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF759ASI bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF643CGH 4825758879 ENCODE Processing Pipeline afab1acf5859db8b39b53b7eff53db68 https://www.encodeproject.org/files/ENCFF759ASI/@@download/ENCFF759ASI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF276QQO bam alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF944XPT, ENCFF957KBX 2149406038 ENCODE Processing Pipeline e374d93259bb71cd5e43af8476ac264f https://www.encodeproject.org/files/ENCFF276QQO/@@download/ENCFF276QQO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF675VGN bam alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF643CGH, ENCFF992GOW 2521761814 ENCODE Processing Pipeline 0e9a3a7d3315586f574b40d4aa6eadde https://www.encodeproject.org/files/ENCFF675VGN/@@download/ENCFF675VGN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF618WHB bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF643CGH, ENCFF720YIW 3237551452 ENCODE Processing Pipeline df4768984ccb430e5dc17313d942eb2c https://www.encodeproject.org/files/ENCFF618WHB/@@download/ENCFF618WHB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF639VBS bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF643CGH 3480478079 ENCODE Processing Pipeline ba073fb3b5aba0956744642f02ecb103 https://www.encodeproject.org/files/ENCFF639VBS/@@download/ENCFF639VBS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246PZZ bam alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF643CGH 817653362 ENCODE Processing Pipeline 4dcf1a27a91c76281f0d3cf80454f492 https://www.encodeproject.org/files/ENCFF246PZZ/@@download/ENCFF246PZZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF995IZW bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF643CGH 4679392187 ENCODE Processing Pipeline 276486fdf1ccda30966e13fcf530d12e https://www.encodeproject.org/files/ENCFF995IZW/@@download/ENCFF995IZW.bam GRCh38 released mild to moderate bottlenecking ENCFF141XAC bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF643CGH 5637061521 ENCODE Processing Pipeline f3c2bf0a50e6e63c7dfbf9f27f5ec9f5 https://www.encodeproject.org/files/ENCFF141XAC/@@download/ENCFF141XAC.bam GRCh38 released mild to moderate bottlenecking ENCFF211PNG bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF703VJZ 1310429502 ENCODE Processing Pipeline df3f74e177b547ef1f5af82d20f5ee3f https://www.encodeproject.org/files/ENCFF211PNG/@@download/ENCFF211PNG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF869KFS bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF974TAR 1432560498 ENCODE Processing Pipeline b251cff34bbc740a0e8287f6313e22d1 https://www.encodeproject.org/files/ENCFF869KFS/@@download/ENCFF869KFS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF070YVD bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF643CGH 554273499 ENCODE Processing Pipeline d9e23a315ebf032c2e84f19c3aafdeac https://www.encodeproject.org/files/ENCFF070YVD/@@download/ENCFF070YVD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF473BSK bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF643CGH 549214024 ENCODE Processing Pipeline 0cbee7214e53e253cc22ae240632aaca https://www.encodeproject.org/files/ENCFF473BSK/@@download/ENCFF473BSK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330XIE bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF763NHP 1206532281 ENCODE Processing Pipeline a6201959cbf9d7974aeeeb0ce034b1de https://www.encodeproject.org/files/ENCFF330XIE/@@download/ENCFF330XIE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF191DNO bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF643CGH 1322490442 ENCODE Processing Pipeline cbba37a68dc5680fbe950afa3d4a4518 https://www.encodeproject.org/files/ENCFF191DNO/@@download/ENCFF191DNO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF679DHO bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF643CGH, ENCFF900MMA 1623315757 ENCODE Processing Pipeline 5b44661a53e49c005e28c47a7751ce82 https://www.encodeproject.org/files/ENCFF679DHO/@@download/ENCFF679DHO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF919FST bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF643CGH 1313061115 ENCODE Processing Pipeline 487f2344ef7ce0f9dee610202b5f3384 https://www.encodeproject.org/files/ENCFF919FST/@@download/ENCFF919FST.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF098GAO bam alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF643CGH 2987483517 ENCODE Processing Pipeline 215110a2c4d25aa1c09fb12ff882b6f0 https://www.encodeproject.org/files/ENCFF098GAO/@@download/ENCFF098GAO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF411KDZ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF643CGH 449059427 ENCODE Processing Pipeline a4f1e314c81f80c43d7f76d8437483d1 https://www.encodeproject.org/files/ENCFF411KDZ/@@download/ENCFF411KDZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF764KYI bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF643CGH 724350577 ENCODE Processing Pipeline 914afbbcbeccada93f582d84cd8849cb https://www.encodeproject.org/files/ENCFF764KYI/@@download/ENCFF764KYI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF347EJI bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF643CGH 508140908 ENCODE Processing Pipeline 3dabed910ca20e140c3851d5b9a4eb0b https://www.encodeproject.org/files/ENCFF347EJI/@@download/ENCFF347EJI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF523AMT bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF643CGH 621339203 ENCODE Processing Pipeline 1f6fc82836df89e6da80382597cb6760 https://www.encodeproject.org/files/ENCFF523AMT/@@download/ENCFF523AMT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF106HDQ bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF643CGH 5799361833 ENCODE Processing Pipeline 21c7c83c60482da016d8509d30819e64 https://www.encodeproject.org/files/ENCFF106HDQ/@@download/ENCFF106HDQ.bam GRCh38 released ENCFF078ZTO bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF643CGH 5083747638 ENCODE Processing Pipeline a42d16cd7a0261eda0c91592a4d5119a https://www.encodeproject.org/files/ENCFF078ZTO/@@download/ENCFF078ZTO.bam GRCh38 released ENCFF350ULX bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF643CGH 2968143377 ENCODE Processing Pipeline fa2eb3b3f27967bc83850ee918876afe https://www.encodeproject.org/files/ENCFF350ULX/@@download/ENCFF350ULX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF806TCI bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF643CGH 3007029896 ENCODE Processing Pipeline 7ba27f46116865533570fb393099ac57 https://www.encodeproject.org/files/ENCFF806TCI/@@download/ENCFF806TCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF058IMO bam alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF643CGH 3643447141 ENCODE Processing Pipeline 75a9dcf2207bfd2f3392253a576e0fc0 https://www.encodeproject.org/files/ENCFF058IMO/@@download/ENCFF058IMO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF580KMP bam alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF643CGH 2869951323 ENCODE Processing Pipeline 0818a4819f1d119f542d3ec44da123c6 https://www.encodeproject.org/files/ENCFF580KMP/@@download/ENCFF580KMP.bam GRCh38 released antibody characterized with exemption ENCFF399QIP bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF643CGH 658647063 ENCODE Processing Pipeline 135436e87a5aa6285088d57b82206646 https://www.encodeproject.org/files/ENCFF399QIP/@@download/ENCFF399QIP.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF802IZN bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF643CGH 687522694 ENCODE Processing Pipeline 572749ec1845e9028802b150709feda2 https://www.encodeproject.org/files/ENCFF802IZN/@@download/ENCFF802IZN.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF852QTC bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643CGH, ENCFF643KQW, ENCFF976CAW 6557271254 ENCODE Processing Pipeline e783d1bd53019f4a8bd178a5e7fc469f https://www.encodeproject.org/files/ENCFF852QTC/@@download/ENCFF852QTC.bam GRCh38 released mild to moderate bottlenecking ENCFF936NPT bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF643CGH, ENCFF813EGO, ENCFF882VBQ 7434548966 ENCODE Processing Pipeline 83702458f69aacff21ce3892b918c115 https://www.encodeproject.org/files/ENCFF936NPT/@@download/ENCFF936NPT.bam GRCh38 released mild to moderate bottlenecking ENCFF259RRK bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF643CGH 683456399 ENCODE Processing Pipeline 6c352c50bc6fb0f963db23ec7085620c https://www.encodeproject.org/files/ENCFF259RRK/@@download/ENCFF259RRK.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF244IJF bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF643CGH 720722815 ENCODE Processing Pipeline 42886c9aa6d7a45ab34ae6ad18765033 https://www.encodeproject.org/files/ENCFF244IJF/@@download/ENCFF244IJF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF450GSC bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF643CGH 136699981 ENCODE Processing Pipeline 180a2173713c208defdec19a770596ce https://www.encodeproject.org/files/ENCFF450GSC/@@download/ENCFF450GSC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF034ZGA bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF643CGH 285553914 ENCODE Processing Pipeline 9618070dadc022121de34d5528fb5b74 https://www.encodeproject.org/files/ENCFF034ZGA/@@download/ENCFF034ZGA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF703WUV bam alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF643CGH, ENCFF761XFH 2608975920 ENCODE Processing Pipeline 2ca78bd95a4f1b9c23cdde7a15b260a7 https://www.encodeproject.org/files/ENCFF703WUV/@@download/ENCFF703WUV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF492JIH bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF643CGH 795626097 ENCODE Processing Pipeline 389f546524435c3d224ffdacc9f2d6f9 https://www.encodeproject.org/files/ENCFF492JIH/@@download/ENCFF492JIH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF598TAE bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF643CGH 956713616 ENCODE Processing Pipeline 1547820724d18aa399457404b25d0835 https://www.encodeproject.org/files/ENCFF598TAE/@@download/ENCFF598TAE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF871QFB bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF643CGH, ENCFF799CJA 5274261016 ENCODE Processing Pipeline 3dbb44aad9251f546eac290b2ea5977a https://www.encodeproject.org/files/ENCFF871QFB/@@download/ENCFF871QFB.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF904HKQ bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF700HWC, ENCFF957SQJ 5206630767 ENCODE Processing Pipeline c968a695f639f0f80b63b9be2dcca07e https://www.encodeproject.org/files/ENCFF904HKQ/@@download/ENCFF904HKQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF753CCI bam alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF643CGH, ENCFF834WKY 5537528425 ENCODE Processing Pipeline 5f6529c0cd53ccf8c2ff108b0c404258 https://www.encodeproject.org/files/ENCFF753CCI/@@download/ENCFF753CCI.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF382USC bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF724KPM, ENCFF863GNT 4357820758 ENCODE Processing Pipeline 378d6ff843d692113680cdbeeb59bce5 https://www.encodeproject.org/files/ENCFF382USC/@@download/ENCFF382USC.bam GRCh38 released ENCFF722EAP bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 100 ENCFF485UKV, ENCFF643CGH, ENCFF881QTR 5503884084 ENCODE Processing Pipeline fc0ff15a094b95d221c1df6a8d4d917b https://www.encodeproject.org/files/ENCFF722EAP/@@download/ENCFF722EAP.bam GRCh38 released ENCFF265RTL bam alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF643CGH 3823620422 ENCODE Processing Pipeline 1a7b31f412358c53e0c1ec21c231da9f https://www.encodeproject.org/files/ENCFF265RTL/@@download/ENCFF265RTL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF397ADX bam alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF643CGH 2656614389 ENCODE Processing Pipeline 54932ff7d2bac92ba862c1267e3b0fc3 https://www.encodeproject.org/files/ENCFF397ADX/@@download/ENCFF397ADX.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF952DYI bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF643CGH 5441787149 ENCODE Processing Pipeline 8bec70dd8f4a8c999fd1591f25a3c7fc https://www.encodeproject.org/files/ENCFF952DYI/@@download/ENCFF952DYI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF306BMN bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF643CGH, ENCFF906WRW 5450953025 ENCODE Processing Pipeline 7146be608afc4fea947bde1cb95e5b29 https://www.encodeproject.org/files/ENCFF306BMN/@@download/ENCFF306BMN.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF666UIT bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF643CGH 4629952430 ENCODE Processing Pipeline 3fe10d0d816da9322140630581e8e89d https://www.encodeproject.org/files/ENCFF666UIT/@@download/ENCFF666UIT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF851NRN bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF643CGH, ENCFF990KCY 4827290976 ENCODE Processing Pipeline a6e4120899bc863a6932a895986cdba1 https://www.encodeproject.org/files/ENCFF851NRN/@@download/ENCFF851NRN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF257XYL bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF643CGH 4004369718 ENCODE Processing Pipeline 045dfc2339d8cbc67bcac6fef6837fd1 https://www.encodeproject.org/files/ENCFF257XYL/@@download/ENCFF257XYL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF529JDU bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF643CGH, ENCFF814CFQ 4415833210 ENCODE Processing Pipeline a959bea9ac9f0b8030d1f45b147fdff5 https://www.encodeproject.org/files/ENCFF529JDU/@@download/ENCFF529JDU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF644RTP bam alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF643CGH 3251892550 ENCODE Processing Pipeline 5a43d57aea6d627ea5c59f27b585b727 https://www.encodeproject.org/files/ENCFF644RTP/@@download/ENCFF644RTP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF165STC bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 100 ENCFF607RXB, ENCFF633AET, ENCFF643CGH 5350483465 ENCODE Processing Pipeline 0ebed50d70a6cac077c9e6a59177a36c https://www.encodeproject.org/files/ENCFF165STC/@@download/ENCFF165STC.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF694KHP bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 100 ENCFF111REI, ENCFF554XIX, ENCFF643CGH 6447864103 ENCODE Processing Pipeline d58d544cfa594c433a2c71bac9632e7c https://www.encodeproject.org/files/ENCFF694KHP/@@download/ENCFF694KHP.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF421FQC bam alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF643CGH, ENCFF890YAG, ENCFF901EEE 3229558051 ENCODE Processing Pipeline 247c8851ec13aac3d5b538264e327dfe https://www.encodeproject.org/files/ENCFF421FQC/@@download/ENCFF421FQC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF430QKJ bam alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF643CGH 5078688686 ENCODE Processing Pipeline 30de3f6c2a54d653b97d77feea05343a https://www.encodeproject.org/files/ENCFF430QKJ/@@download/ENCFF430QKJ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF407YXS bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF643CGH, ENCFF780PZZ 4937379476 ENCODE Processing Pipeline 7bbc0ea3e633cc7fff82405d49b892ee https://www.encodeproject.org/files/ENCFF407YXS/@@download/ENCFF407YXS.bam GRCh38 released ENCFF151AWK bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF643CGH 5852061186 ENCODE Processing Pipeline 7dab7ed868f22cacb04f3b6bdf4c2bcc https://www.encodeproject.org/files/ENCFF151AWK/@@download/ENCFF151AWK.bam GRCh38 released ENCFF933WJH bam alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF643CGH, ENCFF920QMA 6044955728 ENCODE Processing Pipeline 895a777fb870cb24e7c6b26b674076bb https://www.encodeproject.org/files/ENCFF933WJH/@@download/ENCFF933WJH.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF123JQA bam alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF643CGH, ENCFF680WFP 2883229961 ENCODE Processing Pipeline e5e1501bbee8e5e4b69ef1e2711ff6a9 https://www.encodeproject.org/files/ENCFF123JQA/@@download/ENCFF123JQA.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF927VOZ bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF643CGH 1255002795 ENCODE Processing Pipeline 4da1553dc2e7baa9686d1b93f849807e https://www.encodeproject.org/files/ENCFF927VOZ/@@download/ENCFF927VOZ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF736DHC bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF643CGH 2020247244 ENCODE Processing Pipeline a1c7d846b3114906d41f18303c6437c8 https://www.encodeproject.org/files/ENCFF736DHC/@@download/ENCFF736DHC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF973KMA bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF643CGH 1240183484 ENCODE Processing Pipeline f6bb141598b09b73ef3cca4ad3110dc6 https://www.encodeproject.org/files/ENCFF973KMA/@@download/ENCFF973KMA.bam GRCh38 released low read length biological replicates with identical biosample ENCFF805LGC bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF643CGH 1235513477 ENCODE Processing Pipeline ab1e209a858d53e7c84e75ab4ff898e4 https://www.encodeproject.org/files/ENCFF805LGC/@@download/ENCFF805LGC.bam GRCh38 released low read length biological replicates with identical biosample ENCFF858TGO bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF643CGH, ENCFF780IGT 4230258502 ENCODE Processing Pipeline 84bc2fb2591ae6ac64f8e55e6795f745 https://www.encodeproject.org/files/ENCFF858TGO/@@download/ENCFF858TGO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF250JTL bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF643CGH 4878532785 ENCODE Processing Pipeline 616f029b1b30a4457da64521359c3242 https://www.encodeproject.org/files/ENCFF250JTL/@@download/ENCFF250JTL.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF746REA bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF643CGH, ENCFF830DDU 4103187236 ENCODE Processing Pipeline c8e1be321a0f9f202f410b62f926ef0f https://www.encodeproject.org/files/ENCFF746REA/@@download/ENCFF746REA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF540WIL bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF643CGH, ENCFF857UFP 5071417688 ENCODE Processing Pipeline 81d121de24041e86499b687c1287f4a3 https://www.encodeproject.org/files/ENCFF540WIL/@@download/ENCFF540WIL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF707MEF bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF771RGQ 1660287107 ENCODE Processing Pipeline 5075fdc0160ba111f4c38a4bf826e184 https://www.encodeproject.org/files/ENCFF707MEF/@@download/ENCFF707MEF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405FFP bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF643CGH 1395001508 ENCODE Processing Pipeline e7503c5d5c6f3b86e534fc6d5ff59213 https://www.encodeproject.org/files/ENCFF405FFP/@@download/ENCFF405FFP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF481BPS bam alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF706YJI, ENCFF882UZC 4550227563 ENCODE Processing Pipeline 5680b25e095202b5695d1e400c84e598 https://www.encodeproject.org/files/ENCFF481BPS/@@download/ENCFF481BPS.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF871GXE bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BWM, ENCFF643CGH 361167135 ENCODE Processing Pipeline f2a54720aa697bf3488d7426e8b588ba https://www.encodeproject.org/files/ENCFF871GXE/@@download/ENCFF871GXE.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF550BMQ bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BWR, ENCFF643CGH 318523205 ENCODE Processing Pipeline a22e331e1d9ff11dfc012eae706e62cc https://www.encodeproject.org/files/ENCFF550BMQ/@@download/ENCFF550BMQ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF085VAF bam alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF643CGH, ENCFF656FMR 2783294050 ENCODE Processing Pipeline 8520ead2534e53e0c3804719d20c0922 https://www.encodeproject.org/files/ENCFF085VAF/@@download/ENCFF085VAF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF898CWV bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF643CGH 915254037 ENCODE Processing Pipeline 7f88781e04365159184035f294d5fefa https://www.encodeproject.org/files/ENCFF898CWV/@@download/ENCFF898CWV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF279PAE bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF643CGH 1755881038 ENCODE Processing Pipeline cf8caf0e4dbdc8ebab9b913b952e0f9d https://www.encodeproject.org/files/ENCFF279PAE/@@download/ENCFF279PAE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF924UDG bam alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF643CGH, ENCFF779XEB 4526897341 ENCODE Processing Pipeline ac1ab3f19e6503897d27409acec92c37 https://www.encodeproject.org/files/ENCFF924UDG/@@download/ENCFF924UDG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF243OVT bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF643CGH 5268996482 ENCODE Processing Pipeline dd43b45233d1e6dc3e721a8a67046569 https://www.encodeproject.org/files/ENCFF243OVT/@@download/ENCFF243OVT.bam GRCh38 released antibody characterized with exemption ENCFF689GLS bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF643CGH 6624752927 ENCODE Processing Pipeline 0d805d4e63c732786f056271891154d0 https://www.encodeproject.org/files/ENCFF689GLS/@@download/ENCFF689GLS.bam GRCh38 released antibody characterized with exemption ENCFF364GLZ bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF093KEW, ENCFF643CGH 1399362042 ENCODE Processing Pipeline b23bde2622b5e09d3a78db821c2fe058 https://www.encodeproject.org/files/ENCFF364GLZ/@@download/ENCFF364GLZ.bam GRCh38 released missing control alignments ENCFF865TZQ bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF643CGH, ENCFF735IUI 1787364545 ENCODE Processing Pipeline 7dca90d2eac38c15365fdbf57cb99202 https://www.encodeproject.org/files/ENCFF865TZQ/@@download/ENCFF865TZQ.bam GRCh38 released missing control alignments ENCFF729YXL bam alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF643CGH, ENCFF823QEH 2277237452 ENCODE Processing Pipeline 0e1eed2c3abe1113e3369912290b3b49 https://www.encodeproject.org/files/ENCFF729YXL/@@download/ENCFF729YXL.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF614EKP bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF814BAR, ENCFF992PSP 5531686265 ENCODE Processing Pipeline 3002972f8e4fddaff63810e3ea1df128 https://www.encodeproject.org/files/ENCFF614EKP/@@download/ENCFF614EKP.bam GRCh38 released ENCFF768MOL bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF643CGH, ENCFF672NLI 5537560044 ENCODE Processing Pipeline 3f46b556b76a84b4db19f3045e8a1f5c https://www.encodeproject.org/files/ENCFF768MOL/@@download/ENCFF768MOL.bam GRCh38 released ENCFF241VRG bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF643CGH 5680499686 ENCODE Processing Pipeline a34566b4cb1da0999bb97297e2ee4647 https://www.encodeproject.org/files/ENCFF241VRG/@@download/ENCFF241VRG.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF066ZSK bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF643CGH 7094526339 ENCODE Processing Pipeline 745ad98736aeae98d57ea491debd99ea https://www.encodeproject.org/files/ENCFF066ZSK/@@download/ENCFF066ZSK.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF151NRC bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF643CGH 4863011266 ENCODE Processing Pipeline 3b4bbc175f18ccee60a44a403b2e5d67 https://www.encodeproject.org/files/ENCFF151NRC/@@download/ENCFF151NRC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF374OTD bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF643CGH 6631121817 ENCODE Processing Pipeline 28739b2f7ae149c9c3149961d9a97b63 https://www.encodeproject.org/files/ENCFF374OTD/@@download/ENCFF374OTD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF060DER bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF404XXI, ENCFF580UJW, ENCFF643CGH 3824994853 ENCODE Processing Pipeline 89f402431f4ba4d8dfd92f840292705e https://www.encodeproject.org/files/ENCFF060DER/@@download/ENCFF060DER.bam GRCh38 released borderline replicate concordance ENCFF357QWW bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF645TLG, ENCFF791NQC 5073955281 ENCODE Processing Pipeline 3b34f89de2d7e9e4aa3e63a0d454c162 https://www.encodeproject.org/files/ENCFF357QWW/@@download/ENCFF357QWW.bam GRCh38 released borderline replicate concordance ENCFF080PPI bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF428XVA, ENCFF643CGH 384469422 ENCODE Processing Pipeline 54a6271b5f9c8a7333440cdc9b4494fd https://www.encodeproject.org/files/ENCFF080PPI/@@download/ENCFF080PPI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF258VXR bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF643CGH, ENCFF724HOV 460737283 ENCODE Processing Pipeline 26160005a207b7dd118d3b538392d7df https://www.encodeproject.org/files/ENCFF258VXR/@@download/ENCFF258VXR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF720ANK bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF643CGH 4870226174 ENCODE Processing Pipeline b0a8d40527c3917342ddd1d2f057b59b https://www.encodeproject.org/files/ENCFF720ANK/@@download/ENCFF720ANK.bam GRCh38 released ENCFF875FET bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF643CGH 5392080530 ENCODE Processing Pipeline 430e16c58bd1b91b3dafd61286b24bba https://www.encodeproject.org/files/ENCFF875FET/@@download/ENCFF875FET.bam GRCh38 released ENCFF431GNR bam alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF643CGH, ENCFF800QOR 4601549056 ENCODE Processing Pipeline fd177910333ea3062f555808ea4fd702 https://www.encodeproject.org/files/ENCFF431GNR/@@download/ENCFF431GNR.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF626ZUD bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF643CGH 587197890 ENCODE Processing Pipeline 5c7a09bafca39d77367d247feb7fd8b4 https://www.encodeproject.org/files/ENCFF626ZUD/@@download/ENCFF626ZUD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF349CJZ bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF643CGH 782429311 ENCODE Processing Pipeline 5b91bae52efa950f1fcbf2671be15a6d https://www.encodeproject.org/files/ENCFF349CJZ/@@download/ENCFF349CJZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF975MPZ bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF803FBH, ENCFF935CXJ 9793489857 ENCODE Processing Pipeline 4115aea30c8f7a7f2cc7d17ea6253228 https://www.encodeproject.org/files/ENCFF975MPZ/@@download/ENCFF975MPZ.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF357KDK bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF855KRX, ENCFF857WNF 8706618540 ENCODE Processing Pipeline 5676e8084e680df4864335b3a464421b https://www.encodeproject.org/files/ENCFF357KDK/@@download/ENCFF357KDK.bam GRCh38 released borderline replicate concordance NTR biosample ENCFF226TRN bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF221INE, ENCFF643CGH 1298705502 ENCODE Processing Pipeline be45268f66ff5a89934af28fbe789986 https://www.encodeproject.org/files/ENCFF226TRN/@@download/ENCFF226TRN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF569SUA bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF102EIG, ENCFF643CGH 1678269275 ENCODE Processing Pipeline 70cab526d973f4529c0359aa8e614d13 https://www.encodeproject.org/files/ENCFF569SUA/@@download/ENCFF569SUA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF451NTQ bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF643CGH 4261573065 ENCODE Processing Pipeline 4d46ed9e7b82de1230ceeecde2e3422d https://www.encodeproject.org/files/ENCFF451NTQ/@@download/ENCFF451NTQ.bam GRCh38 released borderline replicate concordance ENCFF304JKT bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF643CGH, ENCFF707YZN 4586116987 ENCODE Processing Pipeline c395dfc21534eb3c61809d2ddfe7e170 https://www.encodeproject.org/files/ENCFF304JKT/@@download/ENCFF304JKT.bam GRCh38 released borderline replicate concordance ENCFF603DLZ bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF643CGH 608591915 ENCODE Processing Pipeline bdc3246e761f3c09977d2d26ee286a77 https://www.encodeproject.org/files/ENCFF603DLZ/@@download/ENCFF603DLZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF034JFG bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF643CGH 1160749551 ENCODE Processing Pipeline b8fcde3e4df65b7cce7cd9ad4b43db42 https://www.encodeproject.org/files/ENCFF034JFG/@@download/ENCFF034JFG.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF496WKU bam alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF643CGH 2578766875 ENCODE Processing Pipeline d8fa2d9a85e4de5287ae2eb0a1217609 https://www.encodeproject.org/files/ENCFF496WKU/@@download/ENCFF496WKU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF754VWZ bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF916BZF, ENCFF930PKX 3488344098 ENCODE Processing Pipeline 3b67a71bda02c1d93a252e4aa8f83b2c https://www.encodeproject.org/files/ENCFF754VWZ/@@download/ENCFF754VWZ.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF715GHX bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF643CGH, ENCFF861EEE 4067719360 ENCODE Processing Pipeline 616fffc7f57d0dff8134f147428b41eb https://www.encodeproject.org/files/ENCFF715GHX/@@download/ENCFF715GHX.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF947UOE bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF643CGH 1273146020 ENCODE Processing Pipeline e524591c11cb6eeaffcdb9fb6c49b09e https://www.encodeproject.org/files/ENCFF947UOE/@@download/ENCFF947UOE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF294RJT bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF643CGH 2219471618 ENCODE Processing Pipeline 8d74edd8999a988679c9626a4128219c https://www.encodeproject.org/files/ENCFF294RJT/@@download/ENCFF294RJT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF818HKZ bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF643CGH 4575865511 ENCODE Processing Pipeline 785fd10c3bed68e5e5ff818477ee1de9 https://www.encodeproject.org/files/ENCFF818HKZ/@@download/ENCFF818HKZ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF407CPT bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF643CGH, ENCFF791QOW 5508273671 ENCODE Processing Pipeline ce1f1b148a6b5b9a0c58efcc31461294 https://www.encodeproject.org/files/ENCFF407CPT/@@download/ENCFF407CPT.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF772UWJ bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF643CGH, ENCFF905PWR 7648925729 ENCODE Processing Pipeline bd181453d705203976607e7866bfa97e https://www.encodeproject.org/files/ENCFF772UWJ/@@download/ENCFF772UWJ.bam GRCh38 released missing genetic modification characterization ENCFF606TJM bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF643CGH 4977742897 ENCODE Processing Pipeline 1e37bae506c014aa9e525642c3eed810 https://www.encodeproject.org/files/ENCFF606TJM/@@download/ENCFF606TJM.bam GRCh38 released missing genetic modification characterization ENCFF519JXW bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF643CGH 1085955562 ENCODE Processing Pipeline 2d02807170eaad3c08a3af9845b366de https://www.encodeproject.org/files/ENCFF519JXW/@@download/ENCFF519JXW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF632STR bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF643CGH 1516805378 ENCODE Processing Pipeline ba2a7e48f6396bc11591013a7950039e https://www.encodeproject.org/files/ENCFF632STR/@@download/ENCFF632STR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF834YLT bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF643CGH 891319891 ENCODE Processing Pipeline 5ea822399507f8a5920a0175901a753f https://www.encodeproject.org/files/ENCFF834YLT/@@download/ENCFF834YLT.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF904PBR bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF643CGH 1110981804 ENCODE Processing Pipeline aa47149b65fc5cebb2a45f26dcd88279 https://www.encodeproject.org/files/ENCFF904PBR/@@download/ENCFF904PBR.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF335MCG bam alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF753KXC, ENCFF775HOD 4161367426 ENCODE Processing Pipeline c3efbd6d52adc20de822c713e2e9c979 https://www.encodeproject.org/files/ENCFF335MCG/@@download/ENCFF335MCG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF034TFU bam alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF643CGH, ENCFF968OEO 3287830424 ENCODE Processing Pipeline 388ab70f7d9236e14538f2432f97dd6c https://www.encodeproject.org/files/ENCFF034TFU/@@download/ENCFF034TFU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF687QLR bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF814FHF, ENCFF841KDB 613900307 ENCODE Processing Pipeline 3398aa630c4f920f614978ac8b440647 https://www.encodeproject.org/files/ENCFF687QLR/@@download/ENCFF687QLR.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF191EJM bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF643CGH, ENCFF978YQI 658974040 ENCODE Processing Pipeline fed53bc02bbdfdda0f801c8688cbd5e1 https://www.encodeproject.org/files/ENCFF191EJM/@@download/ENCFF191EJM.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF379OME bam alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF643CGH 4513948076 ENCODE Processing Pipeline a40348761b5f9fe002bf3b00bfbee84a https://www.encodeproject.org/files/ENCFF379OME/@@download/ENCFF379OME.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF203MUO bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF097RQE, ENCFF643CGH 470446133 ENCODE Processing Pipeline 04a226253e3075ebdcce504e61dd57cf https://www.encodeproject.org/files/ENCFF203MUO/@@download/ENCFF203MUO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF618MHM bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF924FSA 398324919 ENCODE Processing Pipeline 729acd0138fa487ea2f63e7ed8f514ff https://www.encodeproject.org/files/ENCFF618MHM/@@download/ENCFF618MHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF403PJI bam alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF643CGH 3663834907 ENCODE Processing Pipeline 67051d021c9fed4ecd9911f4f539dee9 https://www.encodeproject.org/files/ENCFF403PJI/@@download/ENCFF403PJI.bam GRCh38 released antibody characterized with exemption ENCFF572QQB bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF643CGH 1373685596 ENCODE Processing Pipeline 35979cf18bf392f6d4af514cd7cf798a https://www.encodeproject.org/files/ENCFF572QQB/@@download/ENCFF572QQB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF501SZR bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF770VIU 4298388374 ENCODE Processing Pipeline 67cb79530454eddc4b89355775f82c40 https://www.encodeproject.org/files/ENCFF501SZR/@@download/ENCFF501SZR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF390IDA bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF654QNS, ENCFF910ZOL 3149534164 ENCODE Processing Pipeline 54b70fef96956bcb5f9ae0a275fb49cd https://www.encodeproject.org/files/ENCFF390IDA/@@download/ENCFF390IDA.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF368KUM bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF643CGH, ENCFF781IDS 3884069079 ENCODE Processing Pipeline 8612bf5ee5feb9bf780532d3958d918e https://www.encodeproject.org/files/ENCFF368KUM/@@download/ENCFF368KUM.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF613EZB bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF643CGH 4199731468 ENCODE Processing Pipeline 165b7d7292a679fe933ddfc4e03d3862 https://www.encodeproject.org/files/ENCFF613EZB/@@download/ENCFF613EZB.bam GRCh38 released ENCFF609PQQ bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF643CGH, ENCFF855WMN 4582980884 ENCODE Processing Pipeline 278a86ac087e09008240562bdf11f3f0 https://www.encodeproject.org/files/ENCFF609PQQ/@@download/ENCFF609PQQ.bam GRCh38 released ENCFF465CEB bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF643CGH 3685289463 ENCODE Processing Pipeline a17b97c68a535b2e2d71a0e7a05b3efa https://www.encodeproject.org/files/ENCFF465CEB/@@download/ENCFF465CEB.bam GRCh38 released low read depth ENCFF366RSX bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF643CGH 2964004465 ENCODE Processing Pipeline 5d8201c1a5050532f85f6eb918ddbe06 https://www.encodeproject.org/files/ENCFF366RSX/@@download/ENCFF366RSX.bam GRCh38 released low read depth ENCFF292TPV bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF643CGH, ENCFF741MGM 3343468217 ENCODE Processing Pipeline da25328fe56e16e0450996c4d3a6ee15 https://www.encodeproject.org/files/ENCFF292TPV/@@download/ENCFF292TPV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF564OQO bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF643CGH, ENCFF699QBM 4867229327 ENCODE Processing Pipeline 224853c8ff535258a02a8d6c2899bce7 https://www.encodeproject.org/files/ENCFF564OQO/@@download/ENCFF564OQO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF400MMA bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF643CGH, ENCFF861PLD 999006246 ENCODE Processing Pipeline 9efbc857178b845e3293df331f45d899 https://www.encodeproject.org/files/ENCFF400MMA/@@download/ENCFF400MMA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF593XTM bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF643CGH, ENCFF701VYF 754779497 ENCODE Processing Pipeline 70e250bde64448af66e2880f386fed2e https://www.encodeproject.org/files/ENCFF593XTM/@@download/ENCFF593XTM.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF293OZD bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF614XZH, ENCFF643CGH 244951944 ENCODE Processing Pipeline 2a451db688c5b6567f6617ce4c09f887 https://www.encodeproject.org/files/ENCFF293OZD/@@download/ENCFF293OZD.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF893YRO bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF137DST, ENCFF643CGH 225115402 ENCODE Processing Pipeline 7491002d838a962be2738c240623fd4c https://www.encodeproject.org/files/ENCFF893YRO/@@download/ENCFF893YRO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF785NOU bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF643CGH, ENCFF895UGJ, ENCFF910QTP 3988920627 ENCODE Processing Pipeline 09592de377cac341487c4d9d0ec68231 https://www.encodeproject.org/files/ENCFF785NOU/@@download/ENCFF785NOU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF135YTU bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF643CGH, ENCFF677ULQ 6679698814 ENCODE Processing Pipeline c75a4371aa088bce1187bc288545e1dd https://www.encodeproject.org/files/ENCFF135YTU/@@download/ENCFF135YTU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF938DPX bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF643CGH 890518029 ENCODE Processing Pipeline d4864480d858ed7109066b5cf67669ac https://www.encodeproject.org/files/ENCFF938DPX/@@download/ENCFF938DPX.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF200FYK bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF886ZJD 985329243 ENCODE Processing Pipeline 59ce5010609c5f3bda97e3d7746755df https://www.encodeproject.org/files/ENCFF200FYK/@@download/ENCFF200FYK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF838GWC bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF643CGH, ENCFF698RJT 4437749369 ENCODE Processing Pipeline d8d37527df3f0cd0e258b37aac9f0fb9 https://www.encodeproject.org/files/ENCFF838GWC/@@download/ENCFF838GWC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF183DVK bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF643CGH, ENCFF887CDX 4257787373 ENCODE Processing Pipeline 64f72a1aa3d741fd3ba5b6620b07a705 https://www.encodeproject.org/files/ENCFF183DVK/@@download/ENCFF183DVK.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF599RWY bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF643CGH, ENCFF989GZO 2968560715 ENCODE Processing Pipeline 91d34e573dab4baa1b612e4bb23e12ca https://www.encodeproject.org/files/ENCFF599RWY/@@download/ENCFF599RWY.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF034ZKO bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF643CGH 5267549051 ENCODE Processing Pipeline f5e03dfacb1ca23332076d803b12be3e https://www.encodeproject.org/files/ENCFF034ZKO/@@download/ENCFF034ZKO.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF406RXQ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF643CGH 695316999 ENCODE Processing Pipeline 54f9d433af352ddbb2cb1bcd0fc66cc5 https://www.encodeproject.org/files/ENCFF406RXQ/@@download/ENCFF406RXQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352KKZ bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF643CGH 739841442 ENCODE Processing Pipeline 0bab0a41373568764e8c6c79874c0978 https://www.encodeproject.org/files/ENCFF352KKZ/@@download/ENCFF352KKZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF055UMJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF643CGH 560825464 ENCODE Processing Pipeline e866a3e4278e9ced5c2c89446f982e84 https://www.encodeproject.org/files/ENCFF055UMJ/@@download/ENCFF055UMJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF188RRJ bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF643CGH 437362610 ENCODE Processing Pipeline 335f6482fdbcd5e9c566d4dbadd7d39f https://www.encodeproject.org/files/ENCFF188RRJ/@@download/ENCFF188RRJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF479OYS bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF643CGH 775048073 ENCODE Processing Pipeline 228e02bb79f58d8612720e86e2d2b8a2 https://www.encodeproject.org/files/ENCFF479OYS/@@download/ENCFF479OYS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF864EDI bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF643CGH 1800291274 ENCODE Processing Pipeline 9cd3b255135efbcebd34416af015983a https://www.encodeproject.org/files/ENCFF864EDI/@@download/ENCFF864EDI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF042LKP bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF643CGH, ENCFF672AOW 4378809873 ENCODE Processing Pipeline 57d945f4331fc823ee0c8e4305667547 https://www.encodeproject.org/files/ENCFF042LKP/@@download/ENCFF042LKP.bam GRCh38 released mild to moderate bottlenecking ENCFF342FIU bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF643CGH, ENCFF761NME 6345095790 ENCODE Processing Pipeline 911ebfa1cb40934774919619412ac2a5 https://www.encodeproject.org/files/ENCFF342FIU/@@download/ENCFF342FIU.bam GRCh38 released mild to moderate bottlenecking ENCFF641PXS bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF643CGH 1224715512 ENCODE Processing Pipeline 40d525eb5a980df9b6ec9ead766697e2 https://www.encodeproject.org/files/ENCFF641PXS/@@download/ENCFF641PXS.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF861AOO bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF978CPC 938148959 ENCODE Processing Pipeline aad6da83dac2d56ad08a6671ed161c2b https://www.encodeproject.org/files/ENCFF861AOO/@@download/ENCFF861AOO.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF586GBV bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF643CGH 656966288 ENCODE Processing Pipeline db725a686f834e3e6133953e266a8744 https://www.encodeproject.org/files/ENCFF586GBV/@@download/ENCFF586GBV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF051ILA bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF643CGH 1783414655 ENCODE Processing Pipeline 0ae49028ad5f5a96a5d0683662a2274e https://www.encodeproject.org/files/ENCFF051ILA/@@download/ENCFF051ILA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF400SKV bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF643CGH 4207551439 ENCODE Processing Pipeline 5fee2d667108165a647aa82047dee4a9 https://www.encodeproject.org/files/ENCFF400SKV/@@download/ENCFF400SKV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF498KCA bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF643CGH, ENCFF781WSM 4497998934 ENCODE Processing Pipeline c1e3892de8c9f395b638df6462168bce https://www.encodeproject.org/files/ENCFF498KCA/@@download/ENCFF498KCA.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF855SJQ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF643CGH, ENCFF758PBW 2570768417 ENCODE Processing Pipeline 5e44a5ae55b790739d1edb50096b3a8d https://www.encodeproject.org/files/ENCFF855SJQ/@@download/ENCFF855SJQ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF550TMJ bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF643CGH 4765074197 ENCODE Processing Pipeline 6e4c5567a37413194ee573363b9af0df https://www.encodeproject.org/files/ENCFF550TMJ/@@download/ENCFF550TMJ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF357MHM bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF643CGH 269463976 ENCODE Processing Pipeline 570cbe501650f28205ab4a7e75ff2e6f https://www.encodeproject.org/files/ENCFF357MHM/@@download/ENCFF357MHM.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF491EUN bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF643CGH 347767392 ENCODE Processing Pipeline 775f18315c8f240746a81b5bccd33d15 https://www.encodeproject.org/files/ENCFF491EUN/@@download/ENCFF491EUN.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF691BQZ bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PYJ, ENCFF643CGH 630218936 ENCODE Processing Pipeline a533e02db31afe010b09e75237213d39 https://www.encodeproject.org/files/ENCFF691BQZ/@@download/ENCFF691BQZ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF391HFU bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PYD, ENCFF643CGH 305672367 ENCODE Processing Pipeline bf3c95bde51a6c7ed5e656da66a76b1c https://www.encodeproject.org/files/ENCFF391HFU/@@download/ENCFF391HFU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF349TVK bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF643CGH 727711855 ENCODE Processing Pipeline 9870b125167687ffc4890acd962e8ebe https://www.encodeproject.org/files/ENCFF349TVK/@@download/ENCFF349TVK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF955PGN bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF643CGH 958355511 ENCODE Processing Pipeline 5913f6d45bcbd0d16d01602d62a762da https://www.encodeproject.org/files/ENCFF955PGN/@@download/ENCFF955PGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF522HWT bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF643CGH 629313007 ENCODE Processing Pipeline 2e069292d78c6bd361d1238ebf2d1ba9 https://www.encodeproject.org/files/ENCFF522HWT/@@download/ENCFF522HWT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF246IMM bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF643CGH 915577136 ENCODE Processing Pipeline 6b909ea1d8c4ae5213c2b32b8a561397 https://www.encodeproject.org/files/ENCFF246IMM/@@download/ENCFF246IMM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF845AVW bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF643CGH 242718896 ENCODE Processing Pipeline bd23678aca1e32dcc5c3e0275cb5462f https://www.encodeproject.org/files/ENCFF845AVW/@@download/ENCFF845AVW.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF525TNI bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF643CGH 319734668 ENCODE Processing Pipeline c0f13e6749fbdfe2947c253857ce401b https://www.encodeproject.org/files/ENCFF525TNI/@@download/ENCFF525TNI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF362KOB bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF643CGH, ENCFF666XKI 4162752331 ENCODE Processing Pipeline 8ea45a8f6a779b54da74a57dcb111926 https://www.encodeproject.org/files/ENCFF362KOB/@@download/ENCFF362KOB.bam GRCh38 released mild to moderate bottlenecking ENCFF910GRL bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF643CGH, ENCFF956KKU, ENCFF957QWK 4605788067 ENCODE Processing Pipeline e4c65defc001ac49d6fab1523dc36096 https://www.encodeproject.org/files/ENCFF910GRL/@@download/ENCFF910GRL.bam GRCh38 released mild to moderate bottlenecking ENCFF719VXT bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF643CGH 720623402 ENCODE Processing Pipeline 28b1f39389ed750668ea2d30174fa1bf https://www.encodeproject.org/files/ENCFF719VXT/@@download/ENCFF719VXT.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF281SWL bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF698SDI 887326201 ENCODE Processing Pipeline 27749d5875a817cc590ade2d42f3f9b5 https://www.encodeproject.org/files/ENCFF281SWL/@@download/ENCFF281SWL.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF482VWN bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF643CGH 581362669 ENCODE Processing Pipeline 539346f3085e9be0a1746996bb383646 https://www.encodeproject.org/files/ENCFF482VWN/@@download/ENCFF482VWN.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF291LYW bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF643CGH 816052320 ENCODE Processing Pipeline 8dea214c817ad3a0a733aa1b3055e01a https://www.encodeproject.org/files/ENCFF291LYW/@@download/ENCFF291LYW.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF502KKQ bam alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF850QKH, ENCFF985MPR 4727976166 ENCODE Processing Pipeline 59852c42d4cfeefcb967895c75bcd82e https://www.encodeproject.org/files/ENCFF502KKQ/@@download/ENCFF502KKQ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF981GSU bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF643CGH 447846038 ENCODE Processing Pipeline 66ab8ba1153416e8a6dd52ace05d14c6 https://www.encodeproject.org/files/ENCFF981GSU/@@download/ENCFF981GSU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF627UME bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF643CGH 788083385 ENCODE Processing Pipeline e6322fc82d8523e7035a6394f4b55e56 https://www.encodeproject.org/files/ENCFF627UME/@@download/ENCFF627UME.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF210SBD bam alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF643CGH 3196977121 ENCODE Processing Pipeline a47a379d500d23ce8327001c3c613841 https://www.encodeproject.org/files/ENCFF210SBD/@@download/ENCFF210SBD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF079SPF bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF643CGH 3657861769 ENCODE Processing Pipeline 4b40ac83fce8751438c212e5c994a836 https://www.encodeproject.org/files/ENCFF079SPF/@@download/ENCFF079SPF.bam GRCh38 released low read depth ENCFF738QLQ bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 100 ENCFF150KRT, ENCFF643CGH, ENCFF983NMP 4395963823 ENCODE Processing Pipeline f17219ff3f8dddea7165424b402879a8 https://www.encodeproject.org/files/ENCFF738QLQ/@@download/ENCFF738QLQ.bam GRCh38 released low read depth ENCFF633CMO bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF643CGH 293165137 ENCODE Processing Pipeline 27240f623a95b1593b7ed5612e00fa71 https://www.encodeproject.org/files/ENCFF633CMO/@@download/ENCFF633CMO.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF139WUV bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF643CGH 283706447 ENCODE Processing Pipeline dd62533544a4306b6eb50fb31e8af518 https://www.encodeproject.org/files/ENCFF139WUV/@@download/ENCFF139WUV.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF090FVY bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF643CGH, ENCFF841SWR 4925741703 ENCODE Processing Pipeline 3a284af5f269481ad252e4f4f69667b8 https://www.encodeproject.org/files/ENCFF090FVY/@@download/ENCFF090FVY.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF287IHQ bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF643CGH, ENCFF744BML 4663184474 ENCODE Processing Pipeline 9672737a0367355d9c8b9bbf470c12e5 https://www.encodeproject.org/files/ENCFF287IHQ/@@download/ENCFF287IHQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF521EJT bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF876KCK 1414498841 ENCODE Processing Pipeline 39452f880c15edbd04354e3c273a4507 https://www.encodeproject.org/files/ENCFF521EJT/@@download/ENCFF521EJT.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF601UUP bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF643CGH, ENCFF996PYT 1779406440 ENCODE Processing Pipeline 78c47e4cf07019190e3fd7438929d356 https://www.encodeproject.org/files/ENCFF601UUP/@@download/ENCFF601UUP.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF464EBS bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF643CGH 947584414 ENCODE Processing Pipeline f799e3afac48b8cea9a3edb717d06a57 https://www.encodeproject.org/files/ENCFF464EBS/@@download/ENCFF464EBS.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF542OXT bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF643CGH 875957092 ENCODE Processing Pipeline 5b7c31015fadaafd48e57db20870c5b4 https://www.encodeproject.org/files/ENCFF542OXT/@@download/ENCFF542OXT.bam GRCh38 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF779IQL bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF643CGH 5647704314 ENCODE Processing Pipeline 18bd57301631aed1d28957980a5ce389 https://www.encodeproject.org/files/ENCFF779IQL/@@download/ENCFF779IQL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF257OOQ bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF643CGH, ENCFF742JMT 7653691891 ENCODE Processing Pipeline a82e2cdcf3bf82fc2d70a0f1c966f14d https://www.encodeproject.org/files/ENCFF257OOQ/@@download/ENCFF257OOQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF232XTK bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF745TQE 1260248597 ENCODE Processing Pipeline 2ec9fb0a318518af3a8b5575169123b5 https://www.encodeproject.org/files/ENCFF232XTK/@@download/ENCFF232XTK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF879HPF bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF664SNF 1398449574 ENCODE Processing Pipeline ab75d11a6d15b3cc450f3bc1fb58eb01 https://www.encodeproject.org/files/ENCFF879HPF/@@download/ENCFF879HPF.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF455DUC bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF643CGH 795016172 ENCODE Processing Pipeline 797181d01929bd92ce104c5ae2620101 https://www.encodeproject.org/files/ENCFF455DUC/@@download/ENCFF455DUC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF953HVZ bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF643CGH 1155850085 ENCODE Processing Pipeline 25f0a2236f86d7d53eb71a9088565dba https://www.encodeproject.org/files/ENCFF953HVZ/@@download/ENCFF953HVZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF761LNM bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF643CGH 791308528 ENCODE Processing Pipeline d22749b8b1781295168d79cc154d0fe1 https://www.encodeproject.org/files/ENCFF761LNM/@@download/ENCFF761LNM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF302HOU bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF643CGH 589904002 ENCODE Processing Pipeline 2ab751ca96a94de9f62e9bcc76e9425b https://www.encodeproject.org/files/ENCFF302HOU/@@download/ENCFF302HOU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF749LRJ bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF643CGH 1257666090 ENCODE Processing Pipeline 46bdf485f39dabc7d78d1ee7ae134dd9 https://www.encodeproject.org/files/ENCFF749LRJ/@@download/ENCFF749LRJ.bam GRCh38 released antibody characterized with exemption ENCFF408TSG bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF643CGH, ENCFF855OMG 1230585502 ENCODE Processing Pipeline 2c5fa36d486b3f941a09551cc95b8c7c https://www.encodeproject.org/files/ENCFF408TSG/@@download/ENCFF408TSG.bam GRCh38 released antibody characterized with exemption ENCFF550MIV bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF643CGH 4745639790 ENCODE Processing Pipeline b4832847102ce0373398cdb7a6018e92 https://www.encodeproject.org/files/ENCFF550MIV/@@download/ENCFF550MIV.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF756OQH bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF643CGH 5935525124 ENCODE Processing Pipeline 3ba1ae58c188d49e2f245f147a8dcabf https://www.encodeproject.org/files/ENCFF756OQH/@@download/ENCFF756OQH.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF065CIX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF643CGH 3961420523 ENCODE Processing Pipeline b0a02feebd03a540a2c74230d265abf8 https://www.encodeproject.org/files/ENCFF065CIX/@@download/ENCFF065CIX.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF807RLO bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF643CGH, ENCFF964VCI 2558569209 ENCODE Processing Pipeline bb8c5262b824bd68e508f9b5ed0e3992 https://www.encodeproject.org/files/ENCFF807RLO/@@download/ENCFF807RLO.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF696OXV bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF643CGH, ENCFF949JWR 5721592131 ENCODE Processing Pipeline 45bab6b64497e8781a586bc93c894ef2 https://www.encodeproject.org/files/ENCFF696OXV/@@download/ENCFF696OXV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF651AIL bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF643CGH, ENCFF836KYO 6036690296 ENCODE Processing Pipeline 45c9e8ee72b438bb6e6e1c5eff0f5adc https://www.encodeproject.org/files/ENCFF651AIL/@@download/ENCFF651AIL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF217HIN bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF643CGH 1397621549 ENCODE Processing Pipeline f6055dae7d058a8562ad1d50922a8ae1 https://www.encodeproject.org/files/ENCFF217HIN/@@download/ENCFF217HIN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF073FBT bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF643CGH 1640610586 ENCODE Processing Pipeline c9e53522d72a3962e73c06d3e18e891a https://www.encodeproject.org/files/ENCFF073FBT/@@download/ENCFF073FBT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF453WOE bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF643CGH 698240258 ENCODE Processing Pipeline 1d5072342afd24285393c54dc6b5e2f0 https://www.encodeproject.org/files/ENCFF453WOE/@@download/ENCFF453WOE.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF653FWT bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF643CGH 753220088 ENCODE Processing Pipeline 83b1a536a728d791571667895926fa1f https://www.encodeproject.org/files/ENCFF653FWT/@@download/ENCFF653FWT.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF244WQG bam alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF643CGH, ENCFF894LNI 3980625370 ENCODE Processing Pipeline 79e294a4fc81d802252b7b3f42ddd906 https://www.encodeproject.org/files/ENCFF244WQG/@@download/ENCFF244WQG.bam GRCh38 released antibody characterized with exemption ENCFF840PIA bam alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF663CEY, ENCFF913NPA 3263792119 ENCODE Processing Pipeline 61148116a4c6c67c98a9424a84deb3c7 https://www.encodeproject.org/files/ENCFF840PIA/@@download/ENCFF840PIA.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF622REF bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF643CGH 7529338858 ENCODE Processing Pipeline 9f7759884f419621c0fc2d35d0ed0081 https://www.encodeproject.org/files/ENCFF622REF/@@download/ENCFF622REF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF911WFF bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF643CGH, ENCFF845UON 6970961364 ENCODE Processing Pipeline 3c50f671c78f3fdecd420916704b1d27 https://www.encodeproject.org/files/ENCFF911WFF/@@download/ENCFF911WFF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF794NQC bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF643CGH 939515617 ENCODE Processing Pipeline 766f63f42f17fe494c797d49f12baf4a https://www.encodeproject.org/files/ENCFF794NQC/@@download/ENCFF794NQC.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF511JPZ bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF643CGH 1446556281 ENCODE Processing Pipeline 87d5de2b557d3294015343a66c4f6932 https://www.encodeproject.org/files/ENCFF511JPZ/@@download/ENCFF511JPZ.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF058OZQ bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF643CGH 841836651 ENCODE Processing Pipeline ac34dce2e14b2e0341af40eaa185af01 https://www.encodeproject.org/files/ENCFF058OZQ/@@download/ENCFF058OZQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF658AIS bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF643CGH 1101997075 ENCODE Processing Pipeline fddae2efea2e038c6232cad24b341a3a https://www.encodeproject.org/files/ENCFF658AIS/@@download/ENCFF658AIS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF494RSA bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF643CGH 653576806 ENCODE Processing Pipeline f2cb94a9f27e7eec4db483a57efd0643 https://www.encodeproject.org/files/ENCFF494RSA/@@download/ENCFF494RSA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF832DKY bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF643CGH 543248639 ENCODE Processing Pipeline b7d8e73dfda4bda772afaa768492795c https://www.encodeproject.org/files/ENCFF832DKY/@@download/ENCFF832DKY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF310SVP bam alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF643CGH, ENCFF678KER 3113530448 ENCODE Processing Pipeline 0c01063061505fd381a997688d75c357 https://www.encodeproject.org/files/ENCFF310SVP/@@download/ENCFF310SVP.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF960VKL bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF643CGH 664078365 ENCODE Processing Pipeline 4cdb2322ee7e05bd293428a1506edbf7 https://www.encodeproject.org/files/ENCFF960VKL/@@download/ENCFF960VKL.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF439AQO bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF643CGH 739909683 ENCODE Processing Pipeline b17edd5cf639ebb8ec06c5b8199cbfa2 https://www.encodeproject.org/files/ENCFF439AQO/@@download/ENCFF439AQO.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF314TJA bam alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF643CGH, ENCFF768AUO 3318810180 ENCODE Processing Pipeline f1e3a0033b39245f8bf8825958b66b63 https://www.encodeproject.org/files/ENCFF314TJA/@@download/ENCFF314TJA.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF215YFO bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF643CGH 989605846 ENCODE Processing Pipeline 8f2f43645849f1450a7ea57ca0594cef https://www.encodeproject.org/files/ENCFF215YFO/@@download/ENCFF215YFO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF754RTV bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF643CGH 642156618 ENCODE Processing Pipeline 464c2ab44b209522438ab5fb69c9a127 https://www.encodeproject.org/files/ENCFF754RTV/@@download/ENCFF754RTV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF972HFX bam alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF643CGH, ENCFF950XSB 3380617791 ENCODE Processing Pipeline 676ad5c7600fa10e4ccc887ebe383949 https://www.encodeproject.org/files/ENCFF972HFX/@@download/ENCFF972HFX.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF871ONC bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF643CGH 1089171569 ENCODE Processing Pipeline 667308a98938dd63e68446beadab1225 https://www.encodeproject.org/files/ENCFF871ONC/@@download/ENCFF871ONC.bam GRCh38 released low read depth ENCFF370ZNH bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF643CGH 1205475340 ENCODE Processing Pipeline 9d48da9c24bff0097f71b110a7db332b https://www.encodeproject.org/files/ENCFF370ZNH/@@download/ENCFF370ZNH.bam GRCh38 released low read depth ENCFF103HWK bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF409XOE, ENCFF643CGH 1066103310 ENCODE Processing Pipeline dac1953a7b906cec27f9eb8c09ea9345 https://www.encodeproject.org/files/ENCFF103HWK/@@download/ENCFF103HWK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF806FPG bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF701LMH 1341341575 ENCODE Processing Pipeline 899fb4f3484760de5b78f22be3b06c1f https://www.encodeproject.org/files/ENCFF806FPG/@@download/ENCFF806FPG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF661JYQ bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF934JOM 1237242463 ENCODE Processing Pipeline 9e3a064b96c7a768b5b8032afba6befe https://www.encodeproject.org/files/ENCFF661JYQ/@@download/ENCFF661JYQ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF777LFU bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF643CGH 1241469842 ENCODE Processing Pipeline 9977e4aaeb153437bf677a64c1317c64 https://www.encodeproject.org/files/ENCFF777LFU/@@download/ENCFF777LFU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF417QDU bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF888RXZ 911729109 ENCODE Processing Pipeline 99fd38323ac763769130f46b58fcddfb https://www.encodeproject.org/files/ENCFF417QDU/@@download/ENCFF417QDU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF632BNR bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF643CGH 1102668684 ENCODE Processing Pipeline 4f514465c6235a6a8d89b267f313f31c https://www.encodeproject.org/files/ENCFF632BNR/@@download/ENCFF632BNR.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF958FJQ bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF643CGH, ENCFF783FQX 4821660093 ENCODE Processing Pipeline e9902ad0aa8630e825e51105af8ba536 https://www.encodeproject.org/files/ENCFF958FJQ/@@download/ENCFF958FJQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF894WFT bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF643CGH 6172470631 ENCODE Processing Pipeline c17c42d8193c33abfcab669553bccd6e https://www.encodeproject.org/files/ENCFF894WFT/@@download/ENCFF894WFT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF080WHB bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF643CGH 1138076271 ENCODE Processing Pipeline 233a20dcfce5dd414c18fe5046ed685f https://www.encodeproject.org/files/ENCFF080WHB/@@download/ENCFF080WHB.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF528ZOZ bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF643CGH, ENCFF776IQU 1225439452 ENCODE Processing Pipeline cb6f3de7b312ae94f4d037b7035dc681 https://www.encodeproject.org/files/ENCFF528ZOZ/@@download/ENCFF528ZOZ.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF847XNM bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF643CGH 1359912781 ENCODE Processing Pipeline ce70f6149f7fd2631d627f6130c54596 https://www.encodeproject.org/files/ENCFF847XNM/@@download/ENCFF847XNM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF855ZLU bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF643CGH 1167697886 ENCODE Processing Pipeline d7c26e09a044556145403cbbc9978499 https://www.encodeproject.org/files/ENCFF855ZLU/@@download/ENCFF855ZLU.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF775TBT bam alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF643CGH 2662532750 ENCODE Processing Pipeline df60cfa11a4a3cfd7cff9fd140f45dda https://www.encodeproject.org/files/ENCFF775TBT/@@download/ENCFF775TBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF241ZAF bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 100 ENCFF613UAT, ENCFF618IBA, ENCFF643CGH 2765822513 ENCODE Processing Pipeline 870f03c0fc788af1256644b612fd4647 https://www.encodeproject.org/files/ENCFF241ZAF/@@download/ENCFF241ZAF.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF825VBC bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 100 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF643CGH 3442023711 ENCODE Processing Pipeline c1627a8054a7ad4e1e0985535816fb13 https://www.encodeproject.org/files/ENCFF825VBC/@@download/ENCFF825VBC.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF673BXM bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF643CGH 4338868543 ENCODE Processing Pipeline 91ad0057d578ec9100683a26d2e5edf0 https://www.encodeproject.org/files/ENCFF673BXM/@@download/ENCFF673BXM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF622GDZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF643CGH 4634547922 ENCODE Processing Pipeline 94f227e953313b234b48c817bd4f3a3e https://www.encodeproject.org/files/ENCFF622GDZ/@@download/ENCFF622GDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF708PYT bam alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF643CGH, ENCFF955ITN 3698918496 ENCODE Processing Pipeline e24c0730f641452f97f5f8e93962587d https://www.encodeproject.org/files/ENCFF708PYT/@@download/ENCFF708PYT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF641HZR bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF643CGH 626076397 ENCODE Processing Pipeline d9b3ffcd70e742b3c87ee24bbde32c4f https://www.encodeproject.org/files/ENCFF641HZR/@@download/ENCFF641HZR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF006GQZ bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF643CGH 782225387 ENCODE Processing Pipeline 3350a1e872ed7cd1b5c45b8f4a080148 https://www.encodeproject.org/files/ENCFF006GQZ/@@download/ENCFF006GQZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF709ZMI bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF264IWL, ENCFF483AVN, ENCFF643CGH 4809827254 ENCODE Processing Pipeline 8e18830b20522dec7163746dec0f9a1d https://www.encodeproject.org/files/ENCFF709ZMI/@@download/ENCFF709ZMI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF438XEX bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF339NHI, ENCFF643CGH, ENCFF677HTA 6873743019 ENCODE Processing Pipeline 8de595c9b32b96781443fb0fdb3ead09 https://www.encodeproject.org/files/ENCFF438XEX/@@download/ENCFF438XEX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF343QUJ bam alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF918SCN, ENCFF998ZNW 2959644438 ENCODE Processing Pipeline 3875a8beb4deb02e8506dfc0da5165bf https://www.encodeproject.org/files/ENCFF343QUJ/@@download/ENCFF343QUJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147GTA bam alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF643CGH, ENCFF788KCN 3600686688 ENCODE Processing Pipeline 4b1f1d6eb819062debb873ad7f4384d9 https://www.encodeproject.org/files/ENCFF147GTA/@@download/ENCFF147GTA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF051OIH bam alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF643CGH 4585545229 ENCODE Processing Pipeline bb5c44f0c86900a617e8671b6e92e218 https://www.encodeproject.org/files/ENCFF051OIH/@@download/ENCFF051OIH.bam GRCh38 released antibody characterized with exemption ENCFF492NGU bam alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF643CGH, ENCFF903PDX 3272977112 ENCODE Processing Pipeline f3a992765cbb2f80b83065d7d84fc1c1 https://www.encodeproject.org/files/ENCFF492NGU/@@download/ENCFF492NGU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF161ZFC bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF643CGH 702389605 ENCODE Processing Pipeline f347d10e82943edddda3693258b7baf2 https://www.encodeproject.org/files/ENCFF161ZFC/@@download/ENCFF161ZFC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF718SZZ bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF643CGH 903635803 ENCODE Processing Pipeline e37e1e5a2a5ea56c22c1fe808f032dbe https://www.encodeproject.org/files/ENCFF718SZZ/@@download/ENCFF718SZZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF579AOQ bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF643CGH 955422465 ENCODE Processing Pipeline ba49402cd62db9c5ef7e9817cc391de9 https://www.encodeproject.org/files/ENCFF579AOQ/@@download/ENCFF579AOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF584LIV bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF643CGH 942187642 ENCODE Processing Pipeline 6c6f4d65435d3840c12d130381f54c91 https://www.encodeproject.org/files/ENCFF584LIV/@@download/ENCFF584LIV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF723MRH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF643CGH, ENCFF788SAX 4298680582 ENCODE Processing Pipeline e01a5e39195a0b92867fbd7d2abf2ae2 https://www.encodeproject.org/files/ENCFF723MRH/@@download/ENCFF723MRH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF106ICW bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF643CGH, ENCFF801ZZV 5303027342 ENCODE Processing Pipeline effd3b4185048a8199530bfaa9f792b9 https://www.encodeproject.org/files/ENCFF106ICW/@@download/ENCFF106ICW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF892EFT bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF643CGH, ENCFF799EIX 3305168089 ENCODE Processing Pipeline 9237ebe644dc10f0f78fbacb93b50612 https://www.encodeproject.org/files/ENCFF892EFT/@@download/ENCFF892EFT.bam GRCh38 released experiment not submitted to GEO ENCFF299JJF bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF643CGH 3972138969 ENCODE Processing Pipeline 1b033205be00fc5b41d7571c3d23141b https://www.encodeproject.org/files/ENCFF299JJF/@@download/ENCFF299JJF.bam GRCh38 released experiment not submitted to GEO ENCFF010LCB bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF643CGH, ENCFF839WCB 4404928343 ENCODE Processing Pipeline b119cba897ac79f7b5adba434d6b0739 https://www.encodeproject.org/files/ENCFF010LCB/@@download/ENCFF010LCB.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF175WBA bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF643CGH, ENCFF870PPB 4843140583 ENCODE Processing Pipeline 4f556d73f455328c4920f9b50de6d750 https://www.encodeproject.org/files/ENCFF175WBA/@@download/ENCFF175WBA.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF415FHO bam alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF643CGH 3482055748 ENCODE Processing Pipeline 0406d4d92201e2c376cce89a27404ed9 https://www.encodeproject.org/files/ENCFF415FHO/@@download/ENCFF415FHO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF069JVY bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF643CGH 608578475 ENCODE Processing Pipeline 9d01315cd5f75bbff4ed67424655d073 https://www.encodeproject.org/files/ENCFF069JVY/@@download/ENCFF069JVY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF537IEQ bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF643CGH 789853345 ENCODE Processing Pipeline 00f6bd72182d554479285c349fdc71c7 https://www.encodeproject.org/files/ENCFF537IEQ/@@download/ENCFF537IEQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF874SPI bam alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF643CGH, ENCFF745FWK, ENCFF915DUI 2483293189 ENCODE Processing Pipeline cf1a21f8205427edb3b5efaab016d954 https://www.encodeproject.org/files/ENCFF874SPI/@@download/ENCFF874SPI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF287VUW bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF643CGH 846701506 ENCODE Processing Pipeline 918d005ace505f7572156a8589389909 https://www.encodeproject.org/files/ENCFF287VUW/@@download/ENCFF287VUW.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF520FBS bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF643CGH 871897671 ENCODE Processing Pipeline ec143f195758e98747d98be0e00fdbda https://www.encodeproject.org/files/ENCFF520FBS/@@download/ENCFF520FBS.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF323IVG bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF643CGH, ENCFF744DBX, ENCFF834VSH 3575086421 ENCODE Processing Pipeline 4969325bca7a1fe86c0a08896c479f27 https://www.encodeproject.org/files/ENCFF323IVG/@@download/ENCFF323IVG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF862XFS bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF643CGH 3759710354 ENCODE Processing Pipeline eef54ec03bd1a9e5469e1d43403e3106 https://www.encodeproject.org/files/ENCFF862XFS/@@download/ENCFF862XFS.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF300VIN bam alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF643CGH 3609890045 ENCODE Processing Pipeline 91bd6ba1038b9c44f04613f633f84958 https://www.encodeproject.org/files/ENCFF300VIN/@@download/ENCFF300VIN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF874LOC bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF643CGH, ENCFF698YEB, ENCFF844OMR 5388558299 ENCODE Processing Pipeline feab8acaa4ad1d452d72e6ace43a07af https://www.encodeproject.org/files/ENCFF874LOC/@@download/ENCFF874LOC.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF083HDY bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF643CGH 5058580757 ENCODE Processing Pipeline 53453ffa3be04872a205f468e2318140 https://www.encodeproject.org/files/ENCFF083HDY/@@download/ENCFF083HDY.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF853DFV bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF643CGH 749750229 ENCODE Processing Pipeline 01dca1d3313e723a40e49795433caf9d https://www.encodeproject.org/files/ENCFF853DFV/@@download/ENCFF853DFV.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF503BXT bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF643CGH 1090532025 ENCODE Processing Pipeline 5bd706dad3129daea2e3ed94346e9764 https://www.encodeproject.org/files/ENCFF503BXT/@@download/ENCFF503BXT.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF044HXX bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF945VNK 1067040430 ENCODE Processing Pipeline 5f05145b2e1f479322b62a7334827ed8 https://www.encodeproject.org/files/ENCFF044HXX/@@download/ENCFF044HXX.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF395OWK bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF765EAP 1408728463 ENCODE Processing Pipeline a5a2992328cdd49caf746a188931f64c https://www.encodeproject.org/files/ENCFF395OWK/@@download/ENCFF395OWK.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF908MXL bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF643CGH 870323233 ENCODE Processing Pipeline 388367b292ba90d799e6979265467ccf https://www.encodeproject.org/files/ENCFF908MXL/@@download/ENCFF908MXL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF507UJN bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF643CGH, ENCFF976LPV 1552861162 ENCODE Processing Pipeline acf33d519bd6b83854332dc830c71747 https://www.encodeproject.org/files/ENCFF507UJN/@@download/ENCFF507UJN.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF056HVT bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF643CGH 1018260336 ENCODE Processing Pipeline f349378b74a410e990d2ed137cb16325 https://www.encodeproject.org/files/ENCFF056HVT/@@download/ENCFF056HVT.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF900QPQ bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF643CGH 985787658 ENCODE Processing Pipeline c7c48fd1843dd396c775acf23d0f6960 https://www.encodeproject.org/files/ENCFF900QPQ/@@download/ENCFF900QPQ.bam GRCh38 released antibody characterized with exemption, mixed read lengths ENCFF524KCA bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF643CGH 3014781489 ENCODE Processing Pipeline 39e3a909edfa88a4c35a64c4ed9cb485 https://www.encodeproject.org/files/ENCFF524KCA/@@download/ENCFF524KCA.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF373JGV bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF643CGH, ENCFF792VBK 3952662944 ENCODE Processing Pipeline bc93940905577d51885b9b583376eb96 https://www.encodeproject.org/files/ENCFF373JGV/@@download/ENCFF373JGV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF758JXA bam alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF643CGH, ENCFF760NIU 2818684849 ENCODE Processing Pipeline bc4e4e7e60c8ee29fb2a5187debce572 https://www.encodeproject.org/files/ENCFF758JXA/@@download/ENCFF758JXA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF835IGH bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF643CGH 5360328280 ENCODE Processing Pipeline 4b13f5382d3f644e8069ecc9c53f0be7 https://www.encodeproject.org/files/ENCFF835IGH/@@download/ENCFF835IGH.bam GRCh38 released mild to moderate bottlenecking ENCFF038DYY bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF643CGH, ENCFF674QTV 5172077713 ENCODE Processing Pipeline 4928b8de1319e549ca1fc1372924249e https://www.encodeproject.org/files/ENCFF038DYY/@@download/ENCFF038DYY.bam GRCh38 released mild to moderate bottlenecking ENCFF656BKZ bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF643CGH, ENCFF898MPN 4551293399 ENCODE Processing Pipeline 8943d1611f1b499a13f0674815ff82dd https://www.encodeproject.org/files/ENCFF656BKZ/@@download/ENCFF656BKZ.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF670SFK bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF643CGH, ENCFF865UHF, ENCFF990FFM 2812631763 ENCODE Processing Pipeline a85b263d608a6a5a60ec2f11c8755826 https://www.encodeproject.org/files/ENCFF670SFK/@@download/ENCFF670SFK.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF856DQD bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF643CGH 3710788891 ENCODE Processing Pipeline af962b02dd8d9bc2b550fad4d0accba9 https://www.encodeproject.org/files/ENCFF856DQD/@@download/ENCFF856DQD.bam GRCh38 released borderline replicate concordance ENCFF435DMH bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF643CGH 3635487820 ENCODE Processing Pipeline 3fb43adcb01863be1ad9b2f3dbc0ce0a https://www.encodeproject.org/files/ENCFF435DMH/@@download/ENCFF435DMH.bam GRCh38 released borderline replicate concordance ENCFF563SWH bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF643CGH, ENCFF990OIS 5147957466 ENCODE Processing Pipeline cbe75e127ff2dc3f3cbb9b28720b23db https://www.encodeproject.org/files/ENCFF563SWH/@@download/ENCFF563SWH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF371KSC bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF708HJS, ENCFF999SJJ 4714331675 ENCODE Processing Pipeline 0bfdc4fdfde2cff633a6e8df4cba78d6 https://www.encodeproject.org/files/ENCFF371KSC/@@download/ENCFF371KSC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF703CKR bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF643CGH, ENCFF795LQA 3008581364 ENCODE Processing Pipeline 434023a8f536d7feed790a4c221b3679 https://www.encodeproject.org/files/ENCFF703CKR/@@download/ENCFF703CKR.bam GRCh38 released low read depth ENCFF931HHQ bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF643CGH 3834523294 ENCODE Processing Pipeline 559953405d7c051abc3cce0d2effb650 https://www.encodeproject.org/files/ENCFF931HHQ/@@download/ENCFF931HHQ.bam GRCh38 released low read depth ENCFF232BJL bam alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF838NDW, ENCFF966BYU 3823253807 ENCODE Processing Pipeline 5afda3c03c701037be607adc986390c4 https://www.encodeproject.org/files/ENCFF232BJL/@@download/ENCFF232BJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF580GYQ bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF643CGH 981640803 ENCODE Processing Pipeline 623cee7b4b178da1243a5c5d283d19d2 https://www.encodeproject.org/files/ENCFF580GYQ/@@download/ENCFF580GYQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF171MMW bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF643CGH 1243002574 ENCODE Processing Pipeline c93b65d8c6b257c7b48cd309bb92fcaf https://www.encodeproject.org/files/ENCFF171MMW/@@download/ENCFF171MMW.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF314YLR bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF873VOO 1727362895 ENCODE Processing Pipeline 92ba5945b4434f82fff9553e8bfc9dd4 https://www.encodeproject.org/files/ENCFF314YLR/@@download/ENCFF314YLR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF560LJI bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF856RPX 1144382967 ENCODE Processing Pipeline 807f27917f1b406740ead891a4cb5ba4 https://www.encodeproject.org/files/ENCFF560LJI/@@download/ENCFF560LJI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF425DTQ bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF674UHN 1285257952 ENCODE Processing Pipeline dde293758c499a59e9be5cd406ca7f5c https://www.encodeproject.org/files/ENCFF425DTQ/@@download/ENCFF425DTQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF392ZYL bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF887ZSW 1605622042 ENCODE Processing Pipeline 5d8b64088d07b3e1d008844f41389d64 https://www.encodeproject.org/files/ENCFF392ZYL/@@download/ENCFF392ZYL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF223DHM bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF643CGH 845913815 ENCODE Processing Pipeline b8d13412b8698db2d45fefed4ba1177e https://www.encodeproject.org/files/ENCFF223DHM/@@download/ENCFF223DHM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF517LYO bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF643CGH 930366010 ENCODE Processing Pipeline d2354af53e1643b93ddf8325f856b2fc https://www.encodeproject.org/files/ENCFF517LYO/@@download/ENCFF517LYO.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF591JSQ bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF643CGH 1176200973 ENCODE Processing Pipeline 00f63db27c01b3d288fbb80f1e7d3569 https://www.encodeproject.org/files/ENCFF591JSQ/@@download/ENCFF591JSQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF649MWS bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF643CGH 1307882865 ENCODE Processing Pipeline c9590fea145b416eafd8e32e11c1c7b0 https://www.encodeproject.org/files/ENCFF649MWS/@@download/ENCFF649MWS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF122RSM bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF846BUV, ENCFF959OBE 3536898643 ENCODE Processing Pipeline ec56b9a63fe9bfec9f6a94178b5d0609 https://www.encodeproject.org/files/ENCFF122RSM/@@download/ENCFF122RSM.bam GRCh38 released low read depth ENCFF450TNG bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF643CGH 3580481332 ENCODE Processing Pipeline ac68aeffc27e2d8a6308a406c8393c24 https://www.encodeproject.org/files/ENCFF450TNG/@@download/ENCFF450TNG.bam GRCh38 released low read depth ENCFF924YHD bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF643CGH, ENCFF833EAO 4629594085 ENCODE Processing Pipeline dc43918953373224ee276804448c14e7 https://www.encodeproject.org/files/ENCFF924YHD/@@download/ENCFF924YHD.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF942XRZ bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF696QAK, ENCFF827LCX 5788990216 ENCODE Processing Pipeline 8e5d84773c00b185e95a1cf134b39027 https://www.encodeproject.org/files/ENCFF942XRZ/@@download/ENCFF942XRZ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF070DUF bam alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF643CGH, ENCFF724TVK, ENCFF835LIJ 3890383056 ENCODE Processing Pipeline 39b6bdc6f01c0081732e4cfc77d40625 https://www.encodeproject.org/files/ENCFF070DUF/@@download/ENCFF070DUF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF661TCZ bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF643CGH, ENCFF776KZU 5545495910 ENCODE Processing Pipeline c4003ae9fce0612bec6caa921d881701 https://www.encodeproject.org/files/ENCFF661TCZ/@@download/ENCFF661TCZ.bam GRCh38 released ENCFF215SUP bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF643CGH, ENCFF833EZX 6067687084 ENCODE Processing Pipeline ea4df80b1ec3e7d6e9d8aa8acb086536 https://www.encodeproject.org/files/ENCFF215SUP/@@download/ENCFF215SUP.bam GRCh38 released ENCFF361MVV bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF643CGH 3642777401 ENCODE Processing Pipeline 6091ef40b68d6eb4b7082acd2f436caf https://www.encodeproject.org/files/ENCFF361MVV/@@download/ENCFF361MVV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF089SHL bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF643CGH, ENCFF659XQW 4445494153 ENCODE Processing Pipeline 8cbe4382d97774f7f7563732e729096f https://www.encodeproject.org/files/ENCFF089SHL/@@download/ENCFF089SHL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF410BXB bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF643CGH, ENCFF700CIV, ENCFF872XVD 3067689560 ENCODE Processing Pipeline 71a655fc78b13476690061e971937f5d https://www.encodeproject.org/files/ENCFF410BXB/@@download/ENCFF410BXB.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF287QPE bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF643CGH 4182774140 ENCODE Processing Pipeline 024239acb2dabd9010c520596ee7fd6c https://www.encodeproject.org/files/ENCFF287QPE/@@download/ENCFF287QPE.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF011XRF bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF643CGH, ENCFF644JIO 975007019 ENCODE Processing Pipeline 15d5e4c080f760145489bb7b69c3a5db https://www.encodeproject.org/files/ENCFF011XRF/@@download/ENCFF011XRF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF812KIP bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF643CGH 1202267595 ENCODE Processing Pipeline 14f84bc03e5a78a95522f7770431b0aa https://www.encodeproject.org/files/ENCFF812KIP/@@download/ENCFF812KIP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF218QBY bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF643CGH 684050751 ENCODE Processing Pipeline 86e8747d8916331e5c1eea9f10205e71 https://www.encodeproject.org/files/ENCFF218QBY/@@download/ENCFF218QBY.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF063CFN bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF643CGH, ENCFF843ZPR 730739430 ENCODE Processing Pipeline 21ab969450635a502f0ab09148392089 https://www.encodeproject.org/files/ENCFF063CFN/@@download/ENCFF063CFN.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF027QPB bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF643CGH, ENCFF657HVC 2231094102 ENCODE Processing Pipeline e7b065d1c84b3780c0d6d7f7261d6be4 https://www.encodeproject.org/files/ENCFF027QPB/@@download/ENCFF027QPB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF697TDR bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF643CGH, ENCFF686CXJ 4435627022 ENCODE Processing Pipeline ecbc7fde430469c31a45749f89d3c183 https://www.encodeproject.org/files/ENCFF697TDR/@@download/ENCFF697TDR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF589UVV bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF643CGH 1096748832 ENCODE Processing Pipeline a9fcc96c0b62ccf20ed267cce16daae0 https://www.encodeproject.org/files/ENCFF589UVV/@@download/ENCFF589UVV.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF060WJH bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF643CGH, ENCFF826QKF 959471091 ENCODE Processing Pipeline eb4e3abed1fd9fd12eef0567dfc48baf https://www.encodeproject.org/files/ENCFF060WJH/@@download/ENCFF060WJH.bam GRCh38 released control low read depth, missing genetic modification characterization ENCFF047TEL bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF643CGH 1095449706 ENCODE Processing Pipeline 7a1f655b6da97f7662a7af7b934cee3a https://www.encodeproject.org/files/ENCFF047TEL/@@download/ENCFF047TEL.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF901MSA bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF643CGH 1374690962 ENCODE Processing Pipeline 86fbfc1503423f7697bc086998f5ab3f https://www.encodeproject.org/files/ENCFF901MSA/@@download/ENCFF901MSA.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF939ZVD bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF643CGH, ENCFF781KGN 2385943753 ENCODE Processing Pipeline 29ef95fd30a5a285592a75a736b7d9a8 https://www.encodeproject.org/files/ENCFF939ZVD/@@download/ENCFF939ZVD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF047FIB bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF681GXU 1565529989 ENCODE Processing Pipeline 2a5f9d85fb746ea845be3d6739931814 https://www.encodeproject.org/files/ENCFF047FIB/@@download/ENCFF047FIB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF382DBE bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF643CGH, ENCFF665CXV 1223177321 ENCODE Processing Pipeline cbf1ebb9f3d4fc6cea3e4fa3c4f67aff https://www.encodeproject.org/files/ENCFF382DBE/@@download/ENCFF382DBE.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF888AOR bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF643CGH, ENCFF946BAN 932564663 ENCODE Processing Pipeline c29b68ac34e0bd63f2ea4d09174c1f33 https://www.encodeproject.org/files/ENCFF888AOR/@@download/ENCFF888AOR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF603TYQ bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF643CGH, ENCFF824PVS 2990136770 ENCODE Processing Pipeline 0cc341ffe303c8c1326d91f98ef4aaaf https://www.encodeproject.org/files/ENCFF603TYQ/@@download/ENCFF603TYQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF753YTV bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF643CGH 4828094526 ENCODE Processing Pipeline 28dd25c5513dd94a32b407a41e8b9e5a https://www.encodeproject.org/files/ENCFF753YTV/@@download/ENCFF753YTV.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF330ZVF bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF643CGH 944311289 ENCODE Processing Pipeline 82298dd43c4061f39801ced2c5b15aa6 https://www.encodeproject.org/files/ENCFF330ZVF/@@download/ENCFF330ZVF.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF066TDG bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF643CGH, ENCFF778YOV 890708156 ENCODE Processing Pipeline ad986b20689248196fd426f0c9912b97 https://www.encodeproject.org/files/ENCFF066TDG/@@download/ENCFF066TDG.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF591PEY bam alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF716BNN, ENCFF892KYV 3380982404 ENCODE Processing Pipeline e54f99b7f0181a8beb711fdce652d96d https://www.encodeproject.org/files/ENCFF591PEY/@@download/ENCFF591PEY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF906VNO bam alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF643CGH, ENCFF783OVZ 2598075351 ENCODE Processing Pipeline f044a3859bb2665bcd84275108773452 https://www.encodeproject.org/files/ENCFF906VNO/@@download/ENCFF906VNO.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF045PCB bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF643CGH 4637498538 ENCODE Processing Pipeline e4bf1e8b677ad2ea091c485dac1dcdd0 https://www.encodeproject.org/files/ENCFF045PCB/@@download/ENCFF045PCB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF562VGW bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF643CGH, ENCFF916WNU 3898962936 ENCODE Processing Pipeline e4c59ae4841a0a1309aade4f16b52f6c https://www.encodeproject.org/files/ENCFF562VGW/@@download/ENCFF562VGW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF826HNS bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF643CGH, ENCFF791JGC 4061840332 ENCODE Processing Pipeline 67056b8ad7e2e48ec688a982755b4281 https://www.encodeproject.org/files/ENCFF826HNS/@@download/ENCFF826HNS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF678GYV bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF659EDD, ENCFF899BUS 4126666270 ENCODE Processing Pipeline 56cf246748bcaaacf66bf6d254410f7e https://www.encodeproject.org/files/ENCFF678GYV/@@download/ENCFF678GYV.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF819ZGP bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF643CGH 1433748294 ENCODE Processing Pipeline d800ff56f1adf6434617b103582629a9 https://www.encodeproject.org/files/ENCFF819ZGP/@@download/ENCFF819ZGP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF900SVA bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF851FHG 1575377128 ENCODE Processing Pipeline 121da5ebf96ca1e51400f2431edb6663 https://www.encodeproject.org/files/ENCFF900SVA/@@download/ENCFF900SVA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF512YJL bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF643CGH 1269599344 ENCODE Processing Pipeline af7a13a094cbfc65d61861c8592d4ce2 https://www.encodeproject.org/files/ENCFF512YJL/@@download/ENCFF512YJL.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF090SFR bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF643CGH, ENCFF821MJN 935341586 ENCODE Processing Pipeline 5b5bc93902c434023216b2e1d7183707 https://www.encodeproject.org/files/ENCFF090SFR/@@download/ENCFF090SFR.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF187XIG bam alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF643CGH, ENCFF668XNA 4919182361 ENCODE Processing Pipeline 0f15b416f8245b87b3355d9fbf96cb26 https://www.encodeproject.org/files/ENCFF187XIG/@@download/ENCFF187XIG.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF181CGW bam alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF643CGH, ENCFF943IGO 2653087494 ENCODE Processing Pipeline 2c547df8008032db2934855f38a7e677 https://www.encodeproject.org/files/ENCFF181CGW/@@download/ENCFF181CGW.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF339LDW bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF643CGH 4776278706 ENCODE Processing Pipeline b2a063ef74b94e391928a01ae25cb52f https://www.encodeproject.org/files/ENCFF339LDW/@@download/ENCFF339LDW.bam GRCh38 released mild to moderate bottlenecking ENCFF506OTR bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF643CGH, ENCFF659OJS 4229797780 ENCODE Processing Pipeline 84cda950a8c0484e581226e3bd4c8be9 https://www.encodeproject.org/files/ENCFF506OTR/@@download/ENCFF506OTR.bam GRCh38 released mild to moderate bottlenecking ENCFF647USM bam alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF836HTT, ENCFF956IEA 3950023917 ENCODE Processing Pipeline 100896793c3c42f58e57ea9aaf8b70d4 https://www.encodeproject.org/files/ENCFF647USM/@@download/ENCFF647USM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF369KMY bam alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF643CGH 3507694968 ENCODE Processing Pipeline 4c5ad7fa65e6b67eb494ac4da3997ca4 https://www.encodeproject.org/files/ENCFF369KMY/@@download/ENCFF369KMY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF489UTO bam alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF742HCJ, ENCFF813LLQ 2996792182 ENCODE Processing Pipeline 7ebb2573713bb32b73a6f5437fd3cbd3 https://www.encodeproject.org/files/ENCFF489UTO/@@download/ENCFF489UTO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF047HQY bam alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF643CGH, ENCFF817NUS 5228785527 ENCODE Processing Pipeline 71b336f07f6ae55a8848630a0344bf65 https://www.encodeproject.org/files/ENCFF047HQY/@@download/ENCFF047HQY.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF618GTD bam alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF643CGH, ENCFF793WCO 1249551894 ENCODE Processing Pipeline 3faecaa99b50f0a4114b2c599ca4629e https://www.encodeproject.org/files/ENCFF618GTD/@@download/ENCFF618GTD.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF127FFH bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF643CGH, ENCFF656IHM 832241361 ENCODE Processing Pipeline b8380095939caf492e368b4756b49f84 https://www.encodeproject.org/files/ENCFF127FFH/@@download/ENCFF127FFH.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581GQK bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF643CGH 1084142910 ENCODE Processing Pipeline 45ee6ee0aeb9609c714bb06674e34692 https://www.encodeproject.org/files/ENCFF581GQK/@@download/ENCFF581GQK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF687IOA bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF643CGH, ENCFF659TEJ 5840169144 ENCODE Processing Pipeline d2484a5ee05aebf0436b47b850ba182c https://www.encodeproject.org/files/ENCFF687IOA/@@download/ENCFF687IOA.bam GRCh38 released antibody characterized with exemption ENCFF973ZYR bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF643CGH, ENCFF681FMI 6052121803 ENCODE Processing Pipeline 3706e80bbbd1ce4a87314aebd9ceecc4 https://www.encodeproject.org/files/ENCFF973ZYR/@@download/ENCFF973ZYR.bam GRCh38 released antibody characterized with exemption ENCFF236OFH bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF643CGH 1785791743 ENCODE Processing Pipeline 26800f547d97e1ff04ea33c505ba5f93 https://www.encodeproject.org/files/ENCFF236OFH/@@download/ENCFF236OFH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF749BIB bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF643CGH 2207213443 ENCODE Processing Pipeline 6f0e88429c6a7280a7d3be0ecd024a4b https://www.encodeproject.org/files/ENCFF749BIB/@@download/ENCFF749BIB.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF102VJO bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF643CGH 3468020208 ENCODE Processing Pipeline 2ab83cc5862ce5f119281fc4cb974ec8 https://www.encodeproject.org/files/ENCFF102VJO/@@download/ENCFF102VJO.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF313JTU bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF643CGH, ENCFF682IGK 4214753889 ENCODE Processing Pipeline c3141d62197520a97ef4757b432fc9bd https://www.encodeproject.org/files/ENCFF313JTU/@@download/ENCFF313JTU.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF570KCI bam alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF643CGH 2734710814 ENCODE Processing Pipeline fccfdbfbc835d04748984ceca88465db https://www.encodeproject.org/files/ENCFF570KCI/@@download/ENCFF570KCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF939MWT bam alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF643CGH 4965806951 ENCODE Processing Pipeline 76974b07bfa25eb208842932b5bb1f1e https://www.encodeproject.org/files/ENCFF939MWT/@@download/ENCFF939MWT.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF664CZI bam alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF643CGH 2500717262 ENCODE Processing Pipeline 9eb609a85bb4b0a52204df13b6e2b8bd https://www.encodeproject.org/files/ENCFF664CZI/@@download/ENCFF664CZI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF831UVV bam alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF643CGH, ENCFF856IQE 2847394263 ENCODE Processing Pipeline 50e82d9c253c0f189a3a65ffacd782f5 https://www.encodeproject.org/files/ENCFF831UVV/@@download/ENCFF831UVV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF714MNN bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF643CGH 4781645296 ENCODE Processing Pipeline 45f402cf10781d2a6218cb1b28299da9 https://www.encodeproject.org/files/ENCFF714MNN/@@download/ENCFF714MNN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF078CGH bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF643CGH 4790646755 ENCODE Processing Pipeline 0c8799ab96b4137ffce446ae14c2dcc4 https://www.encodeproject.org/files/ENCFF078CGH/@@download/ENCFF078CGH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF555QMG bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF643CGH, ENCFF796XXQ, ENCFF920GKJ 4525972530 ENCODE Processing Pipeline 81f93e3ac3f521dc6fbd4069b7a61346 https://www.encodeproject.org/files/ENCFF555QMG/@@download/ENCFF555QMG.bam GRCh38 released antibody characterized with exemption ENCFF273NVY bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF643CGH, ENCFF839NSQ 3647879895 ENCODE Processing Pipeline 30fa0cb4e6046717b17f624bb0123c9f https://www.encodeproject.org/files/ENCFF273NVY/@@download/ENCFF273NVY.bam GRCh38 released antibody characterized with exemption ENCFF582ZOC bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF643CGH, ENCFF986KEK 768141068 ENCODE Processing Pipeline 6c98000f6e16138e45932e941985a4c4 https://www.encodeproject.org/files/ENCFF582ZOC/@@download/ENCFF582ZOC.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF720OTS bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF643CGH, ENCFF647APA 973458834 ENCODE Processing Pipeline db339a288ebd87476cee2a77d5b78c6c https://www.encodeproject.org/files/ENCFF720OTS/@@download/ENCFF720OTS.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF107MGS bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF643CGH, ENCFF696VRU, ENCFF919JNL 4296048590 ENCODE Processing Pipeline 9035e6a7ba0b6f8aac5cfac25e34f572 https://www.encodeproject.org/files/ENCFF107MGS/@@download/ENCFF107MGS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF215EXX bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF643CGH, ENCFF786REQ 4751154386 ENCODE Processing Pipeline 83a014df188673bc9d1382876e880cd6 https://www.encodeproject.org/files/ENCFF215EXX/@@download/ENCFF215EXX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF833ZOK bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF643CGH 3819427161 ENCODE Processing Pipeline a0781964e825d8d9425d0b129a08a8a4 https://www.encodeproject.org/files/ENCFF833ZOK/@@download/ENCFF833ZOK.bam GRCh38 released ENCFF318SPV bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF643CGH 4736350660 ENCODE Processing Pipeline 78751ed967ed07e4cd0b93129012f967 https://www.encodeproject.org/files/ENCFF318SPV/@@download/ENCFF318SPV.bam GRCh38 released ENCFF516KHW bam alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF643CGH 3160611746 ENCODE Processing Pipeline ad380a1142123148029262bbc4a85525 https://www.encodeproject.org/files/ENCFF516KHW/@@download/ENCFF516KHW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF186YOG bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF643CGH, ENCFF881ACQ 4052457997 ENCODE Processing Pipeline ce5535954d9c8cae80f664e988db76f7 https://www.encodeproject.org/files/ENCFF186YOG/@@download/ENCFF186YOG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF321NUU bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF643CGH, ENCFF951FWS 4259141458 ENCODE Processing Pipeline 66f73c15a88d0b6b487ee9acebd5d3fd https://www.encodeproject.org/files/ENCFF321NUU/@@download/ENCFF321NUU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF749XIH bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF965IPJ, ENCFF967WPN 4456139984 ENCODE Processing Pipeline e76dd878ff21c8258ecb91ef0db2e195 https://www.encodeproject.org/files/ENCFF749XIH/@@download/ENCFF749XIH.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF636FDE bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF643CGH 4160620960 ENCODE Processing Pipeline 32da6209b8b050a000467441cb67fadd https://www.encodeproject.org/files/ENCFF636FDE/@@download/ENCFF636FDE.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF015XKO bam alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF024GRH, ENCFF542ZSP, ENCFF643CGH 3844842998 ENCODE Processing Pipeline 3d913b4e828b16ab2c0f0ba036478664 https://www.encodeproject.org/files/ENCFF015XKO/@@download/ENCFF015XKO.bam GRCh38 released antibody characterized with exemption ENCFF102OPY bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF643CGH 667499788 ENCODE Processing Pipeline cedff6080f7eb97a6a72bd9543d2afbf https://www.encodeproject.org/files/ENCFF102OPY/@@download/ENCFF102OPY.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF703HZB bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF769AJC 756416501 ENCODE Processing Pipeline 2d8d31894d362f4818c361670936d89a https://www.encodeproject.org/files/ENCFF703HZB/@@download/ENCFF703HZB.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF939PEG bam alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF643CGH 5710536153 ENCODE Processing Pipeline 13a83af065c95ae1c2625410b22fb71f https://www.encodeproject.org/files/ENCFF939PEG/@@download/ENCFF939PEG.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF204KRO bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF643CGH 3324177848 ENCODE Processing Pipeline 495c4c9a98177076a09ba800238d7906 https://www.encodeproject.org/files/ENCFF204KRO/@@download/ENCFF204KRO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF658FRS bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF643CGH, ENCFF645FSY 8445119871 ENCODE Processing Pipeline dc4e9f8e8b6cee9fc3fb55573619f252 https://www.encodeproject.org/files/ENCFF658FRS/@@download/ENCFF658FRS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF591ADX bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF643CGH 2200964526 ENCODE Processing Pipeline b294025b4df044322a1a4f5c7723582b https://www.encodeproject.org/files/ENCFF591ADX/@@download/ENCFF591ADX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF298ZEH bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF643CGH, ENCFF765DMW 8472199953 ENCODE Processing Pipeline f35264dacba4002a41074efa78eae0f0 https://www.encodeproject.org/files/ENCFF298ZEH/@@download/ENCFF298ZEH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF247FGI bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF643CGH 3206495725 ENCODE Processing Pipeline cd6e60221edbe81057907ded3f2db369 https://www.encodeproject.org/files/ENCFF247FGI/@@download/ENCFF247FGI.bam GRCh38 released low read depth ENCFF488BQX bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF643CGH, ENCFF979ZZF 3538220359 ENCODE Processing Pipeline 144d8f477b45f9b045b4c4ef4c742b60 https://www.encodeproject.org/files/ENCFF488BQX/@@download/ENCFF488BQX.bam GRCh38 released low read depth ENCFF470CJT bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF643CGH 3721118528 ENCODE Processing Pipeline 08caded1ce59894cdfca3ac3668bd6ac https://www.encodeproject.org/files/ENCFF470CJT/@@download/ENCFF470CJT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF866BCZ bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF643CGH, ENCFF921RGY 4994792368 ENCODE Processing Pipeline 7ff723f2bcdf0612c6d4b6a7b6028a07 https://www.encodeproject.org/files/ENCFF866BCZ/@@download/ENCFF866BCZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF559BJS bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF643CGH, ENCFF959SCN 3302132368 ENCODE Processing Pipeline 0b28363d94f9b99bcb857b7d993d6229 https://www.encodeproject.org/files/ENCFF559BJS/@@download/ENCFF559BJS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF725WJS bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF643CGH 3618037374 ENCODE Processing Pipeline 1664a10ba60945c7f81ba008468ec82b https://www.encodeproject.org/files/ENCFF725WJS/@@download/ENCFF725WJS.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF432NAV bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF643CGH, ENCFF740JJX 4114281266 ENCODE Processing Pipeline 121323bf20f907d85256b964b267edeb https://www.encodeproject.org/files/ENCFF432NAV/@@download/ENCFF432NAV.bam GRCh38 released mild to moderate bottlenecking ENCFF824HGA bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF643CGH 5369833028 ENCODE Processing Pipeline 35828711a0515cabf886ffaa73337d40 https://www.encodeproject.org/files/ENCFF824HGA/@@download/ENCFF824HGA.bam GRCh38 released mild to moderate bottlenecking ENCFF459XGP bam alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF643CGH, ENCFF774ZKP 6585661801 ENCODE Processing Pipeline 4e665c215727ea8ccdf410ba6e5ab5b9 https://www.encodeproject.org/files/ENCFF459XGP/@@download/ENCFF459XGP.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF646WTU bam alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF643CGH 2421878080 ENCODE Processing Pipeline 82c9d0aa86c2909378b404bba939fd94 https://www.encodeproject.org/files/ENCFF646WTU/@@download/ENCFF646WTU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF831DYI bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF643CGH, ENCFF912XOK, ENCFF933JZR 3300173137 ENCODE Processing Pipeline 9c8107707e46d0f73bb85be0f3428986 https://www.encodeproject.org/files/ENCFF831DYI/@@download/ENCFF831DYI.bam GRCh38 released experiment not submitted to GEO ENCFF666TEP bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF643CGH 3834210389 ENCODE Processing Pipeline 4cb6c30ad2aeb62fb187f38561f15588 https://www.encodeproject.org/files/ENCFF666TEP/@@download/ENCFF666TEP.bam GRCh38 released experiment not submitted to GEO ENCFF369OGH bam alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF643CGH, ENCFF836VHY 3220434073 ENCODE Processing Pipeline 3501de9ccaaceda0f9e5b4ea1026e879 https://www.encodeproject.org/files/ENCFF369OGH/@@download/ENCFF369OGH.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF283ZIL bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF643CGH 984473579 ENCODE Processing Pipeline 9ea454d2dafc210153040838ae40cb7d https://www.encodeproject.org/files/ENCFF283ZIL/@@download/ENCFF283ZIL.bam GRCh38 released low read depth ENCFF903JXA bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF643CGH 1309458087 ENCODE Processing Pipeline 916e7f623e602ee0fcd41501175cf5f3 https://www.encodeproject.org/files/ENCFF903JXA/@@download/ENCFF903JXA.bam GRCh38 released low read depth ENCFF261BXO bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF643CGH 1305095200 ENCODE Processing Pipeline 38f96996071f609605ab06b63c7a2a0f https://www.encodeproject.org/files/ENCFF261BXO/@@download/ENCFF261BXO.bam GRCh38 released ENCFF035GBL bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF643CGH 1267455228 ENCODE Processing Pipeline d20b8c035213987c7e77d9322e2f5b7a https://www.encodeproject.org/files/ENCFF035GBL/@@download/ENCFF035GBL.bam GRCh38 released ENCFF963FTZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF643CGH, ENCFF697WPB 986701596 ENCODE Processing Pipeline fdb61e0b08fc7be114df7fbcf24bb8bd https://www.encodeproject.org/files/ENCFF963FTZ/@@download/ENCFF963FTZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF179SRP bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF643CGH 1158305361 ENCODE Processing Pipeline 51bd213bf48846b000540896829e1a06 https://www.encodeproject.org/files/ENCFF179SRP/@@download/ENCFF179SRP.bam GRCh38 released borderline replicate concordance, low read depth ENCFF414EUV bam alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF643CGH, ENCFF991UEV 3542134488 ENCODE Processing Pipeline 0c85f53aa026fb044872c3aba070caf6 https://www.encodeproject.org/files/ENCFF414EUV/@@download/ENCFF414EUV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF652HPU bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF643CGH 891175496 ENCODE Processing Pipeline 6fcb5f2265c4f979bb78773678d302bf https://www.encodeproject.org/files/ENCFF652HPU/@@download/ENCFF652HPU.bam GRCh38 released control low read depth, inconsistent platforms ENCFF860JBC bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF643CGH 949838539 ENCODE Processing Pipeline 0132ad941e85df5864d4e19c81c4bc46 https://www.encodeproject.org/files/ENCFF860JBC/@@download/ENCFF860JBC.bam GRCh38 released control low read depth, inconsistent platforms ENCFF563DGZ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF643CGH, ENCFF693CFR 3796278466 ENCODE Processing Pipeline cc31ce6b083588fa8fd37e3d016e1c17 https://www.encodeproject.org/files/ENCFF563DGZ/@@download/ENCFF563DGZ.bam GRCh38 released ENCFF750EKT bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF643CGH, ENCFF693GDA 4158977060 ENCODE Processing Pipeline ffa7643e6686dff80273079b23ba6526 https://www.encodeproject.org/files/ENCFF750EKT/@@download/ENCFF750EKT.bam GRCh38 released ENCFF807HHA bam alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF643CGH, ENCFF973HMK 3843769924 ENCODE Processing Pipeline 17e3129db065ce216ae1ceab95e8ba80 https://www.encodeproject.org/files/ENCFF807HHA/@@download/ENCFF807HHA.bam GRCh38 released antibody characterized with exemption ENCFF124ZGE bam alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF643CGH, ENCFF947LDP 3277810314 ENCODE Processing Pipeline 930405c06d3d068529a63508a8f6b0bd https://www.encodeproject.org/files/ENCFF124ZGE/@@download/ENCFF124ZGE.bam GRCh38 released antibody characterized with exemption ENCFF026PAK bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF972RFP 564497431 ENCODE Processing Pipeline 441207bf3f75ff61875370b542ff06b4 https://www.encodeproject.org/files/ENCFF026PAK/@@download/ENCFF026PAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF439AGS bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF698TRM 584700841 ENCODE Processing Pipeline 500f51497123938f331f5e19f80d3061 https://www.encodeproject.org/files/ENCFF439AGS/@@download/ENCFF439AGS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF677BBS bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF643CGH 1241088305 ENCODE Processing Pipeline 128e9cfe034d16507d3bc51c92cd3771 https://www.encodeproject.org/files/ENCFF677BBS/@@download/ENCFF677BBS.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF983RUX bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF643CGH 1153392054 ENCODE Processing Pipeline b73068fdac151ee94d27a4e009b927e8 https://www.encodeproject.org/files/ENCFF983RUX/@@download/ENCFF983RUX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF361MTW bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF970NLP 437556134 ENCODE Processing Pipeline f89031a04ca2f0cb80656f3c73ca43f2 https://www.encodeproject.org/files/ENCFF361MTW/@@download/ENCFF361MTW.bam GRCh38 released low read length, low read depth ENCFF503JQK bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF761RTS 449126266 ENCODE Processing Pipeline 805ab6ca3a445c33c9bd5a25a75570b9 https://www.encodeproject.org/files/ENCFF503JQK/@@download/ENCFF503JQK.bam GRCh38 released low read length, low read depth ENCFF024VTM bam alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF643CGH, ENCFF952JIY 1922058343 ENCODE Processing Pipeline 6a434313fd5e41e91305c7eb7c9adcb8 https://www.encodeproject.org/files/ENCFF024VTM/@@download/ENCFF024VTM.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF539DRE bam alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF643CGH, ENCFF933ONW 5549431378 ENCODE Processing Pipeline 450798e46f18935127c5e63b9165caeb https://www.encodeproject.org/files/ENCFF539DRE/@@download/ENCFF539DRE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF211ZVW bam alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF643CGH, ENCFF751ZBO 3661102170 ENCODE Processing Pipeline c7da4ed9bde4b1b0bc8f40b7ccd9b88c https://www.encodeproject.org/files/ENCFF211ZVW/@@download/ENCFF211ZVW.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF436WOY bam alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF643CGH 3387294892 ENCODE Processing Pipeline 831f9db8d4930b8868287ce1de0c6304 https://www.encodeproject.org/files/ENCFF436WOY/@@download/ENCFF436WOY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF949CYQ bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF643CGH, ENCFF817CFB, ENCFF917CWI 4205778981 ENCODE Processing Pipeline 2b49e843a9a6b4944471917449ad5440 https://www.encodeproject.org/files/ENCFF949CYQ/@@download/ENCFF949CYQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF636XWN bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF643CGH 5303720381 ENCODE Processing Pipeline dd634450259e7a542ac21dbb96dc0fe4 https://www.encodeproject.org/files/ENCFF636XWN/@@download/ENCFF636XWN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF983CUE bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF643CGH 3020319589 ENCODE Processing Pipeline 1b1020f983dab266f3bf91a685ea25f0 https://www.encodeproject.org/files/ENCFF983CUE/@@download/ENCFF983CUE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF119JZC bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF643CGH, ENCFF734WRA 3231143857 ENCODE Processing Pipeline e3f6a639bc23b893032585b100d5546b https://www.encodeproject.org/files/ENCFF119JZC/@@download/ENCFF119JZC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF224ODF bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF643CGH 3943976327 ENCODE Processing Pipeline b244c3f0b5fc04dfe3e5f27d6a162888 https://www.encodeproject.org/files/ENCFF224ODF/@@download/ENCFF224ODF.bam GRCh38 released borderline replicate concordance ENCFF675HLZ bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF643CGH, ENCFF985OFU 4427425388 ENCODE Processing Pipeline 10f66f8b1dff682c2c3d1b7514d19037 https://www.encodeproject.org/files/ENCFF675HLZ/@@download/ENCFF675HLZ.bam GRCh38 released borderline replicate concordance ENCFF446IQQ bam alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF643CGH, ENCFF823BPQ 3149585976 ENCODE Processing Pipeline 1d2d98566aed33855544fa515afa88ff https://www.encodeproject.org/files/ENCFF446IQQ/@@download/ENCFF446IQQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF314JRE bam alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF643CGH, ENCFF655EPI 4571503923 ENCODE Processing Pipeline d7f2eb74798dba27c83131bc2a662eb8 https://www.encodeproject.org/files/ENCFF314JRE/@@download/ENCFF314JRE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF199NEL bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF643CGH 432823855 ENCODE Processing Pipeline 59af9cbdbafe8a9d24ddddefc1b311d1 https://www.encodeproject.org/files/ENCFF199NEL/@@download/ENCFF199NEL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF418SGE bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF816NNH 508278358 ENCODE Processing Pipeline 32d8d0f82eceb4439515ab034a8dd2c4 https://www.encodeproject.org/files/ENCFF418SGE/@@download/ENCFF418SGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF923LMN bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF300IMG, ENCFF334HNS, ENCFF643CGH 4150617098 ENCODE Processing Pipeline 18f4fd8d0440d1b3635936617b1f8671 https://www.encodeproject.org/files/ENCFF923LMN/@@download/ENCFF923LMN.bam GRCh38 released ENCFF551IFV bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF107WKN, ENCFF643CGH, ENCFF950QCU 4851050996 ENCODE Processing Pipeline e24600f98ad1ed659b1da918bbbc8e9e https://www.encodeproject.org/files/ENCFF551IFV/@@download/ENCFF551IFV.bam GRCh38 released ENCFF303HBX bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF643CGH 510770240 ENCODE Processing Pipeline ad6290e53b1658b9ca9aa91df6789d9d https://www.encodeproject.org/files/ENCFF303HBX/@@download/ENCFF303HBX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF431TAL bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF643CGH 822036770 ENCODE Processing Pipeline f20353dad5152a058c398f1d8864add4 https://www.encodeproject.org/files/ENCFF431TAL/@@download/ENCFF431TAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF909IAW bam alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF783HNP, ENCFF865CRA 3931322199 ENCODE Processing Pipeline 375c2bf3456b6162c47e76e011eb8fef https://www.encodeproject.org/files/ENCFF909IAW/@@download/ENCFF909IAW.bam GRCh38 released antibody characterized with exemption ENCFF895LEP bam alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF700SNB, ENCFF800HLE 4877403316 ENCODE Processing Pipeline ed2773ce0b47ea15c8b7b8748b025a2b https://www.encodeproject.org/files/ENCFF895LEP/@@download/ENCFF895LEP.bam GRCh38 released antibody characterized with exemption ENCFF925EOE bam alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF643CGH, ENCFF772IAG, ENCFF884DQI 9776135408 ENCODE Processing Pipeline 5b45528d3798bba7050a12f8e81a29f9 https://www.encodeproject.org/files/ENCFF925EOE/@@download/ENCFF925EOE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF728XMR bam alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF643CGH, ENCFF800XBW 8030958869 ENCODE Processing Pipeline ba0b11e9399f87e567f6d5479c8894b1 https://www.encodeproject.org/files/ENCFF728XMR/@@download/ENCFF728XMR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF735ODV bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF685OLC 1330282830 ENCODE Processing Pipeline 62ffcc8e6a376a2098677b85550e92bb https://www.encodeproject.org/files/ENCFF735ODV/@@download/ENCFF735ODV.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF855HUE bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF643CGH 1631088352 ENCODE Processing Pipeline 9e2c38b8dc2c64449a89ef24194c24d7 https://www.encodeproject.org/files/ENCFF855HUE/@@download/ENCFF855HUE.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF340NFD bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF643CGH 1079290340 ENCODE Processing Pipeline bfa665c2361b78b0341c96b25d5834ba https://www.encodeproject.org/files/ENCFF340NFD/@@download/ENCFF340NFD.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF884YQM bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF731JAM 1259644167 ENCODE Processing Pipeline 249ee991ace1d8ddf6d8e2fc9db18d1b https://www.encodeproject.org/files/ENCFF884YQM/@@download/ENCFF884YQM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF185WUG bam alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF643CGH 3753267575 ENCODE Processing Pipeline a53d049cffeb7036b3bf1a33bb09a143 https://www.encodeproject.org/files/ENCFF185WUG/@@download/ENCFF185WUG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF656SPV bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF643CGH 1354694527 ENCODE Processing Pipeline bbc1e8f502766b0d97bf7d499cf119c9 https://www.encodeproject.org/files/ENCFF656SPV/@@download/ENCFF656SPV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF247ZPI bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF643CGH 2239737346 ENCODE Processing Pipeline e1a6d94775d12050425106e13cab9f39 https://www.encodeproject.org/files/ENCFF247ZPI/@@download/ENCFF247ZPI.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF078USH bam alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF643CGH, ENCFF808IIT, ENCFF834PKM 5450223938 ENCODE Processing Pipeline 12c3bbc066fbd546963f554969d99225 https://www.encodeproject.org/files/ENCFF078USH/@@download/ENCFF078USH.bam GRCh38 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF881XYD bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF643CGH 532409359 ENCODE Processing Pipeline e0c6a4411a69f39524e245630f2833ca https://www.encodeproject.org/files/ENCFF881XYD/@@download/ENCFF881XYD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF740GLK bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF643CGH 626902416 ENCODE Processing Pipeline 0a5937aea1d420d70137f1aa7d6d19eb https://www.encodeproject.org/files/ENCFF740GLK/@@download/ENCFF740GLK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF242FNL bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF643CGH 453683376 ENCODE Processing Pipeline a4293a515c6d760c9c1362f3bfd177e7 https://www.encodeproject.org/files/ENCFF242FNL/@@download/ENCFF242FNL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF349HMO bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF643CGH 459803307 ENCODE Processing Pipeline 8d843a3272f924f1100a1c13aa47402e https://www.encodeproject.org/files/ENCFF349HMO/@@download/ENCFF349HMO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF641AUO bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF643CGH 515543121 ENCODE Processing Pipeline e4deb4a32e7cc559b8f71cd693deda0e https://www.encodeproject.org/files/ENCFF641AUO/@@download/ENCFF641AUO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF883UWI bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF643CGH 603446975 ENCODE Processing Pipeline a1b3fa859dd69a09280e9898457721f1 https://www.encodeproject.org/files/ENCFF883UWI/@@download/ENCFF883UWI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF340MAJ bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF643CGH, ENCFF659LDK 3959565029 ENCODE Processing Pipeline 9d2895af4966f5993a737dff3594d2fc https://www.encodeproject.org/files/ENCFF340MAJ/@@download/ENCFF340MAJ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF915PJM bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF643CGH, ENCFF704VXZ 3988082806 ENCODE Processing Pipeline 714a3c6c0991a396697d79bad44ae347 https://www.encodeproject.org/files/ENCFF915PJM/@@download/ENCFF915PJM.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF353ZVY bam alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF803COB, ENCFF866GSF 3586919387 ENCODE Processing Pipeline a0cd581b7660fea41620de43af5a062b https://www.encodeproject.org/files/ENCFF353ZVY/@@download/ENCFF353ZVY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF887LKI bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF643CGH 6468266480 ENCODE Processing Pipeline 93a366d897613f692bc721ed801096e8 https://www.encodeproject.org/files/ENCFF887LKI/@@download/ENCFF887LKI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF627XYQ bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF643CGH 5608798596 ENCODE Processing Pipeline 9566c7fe4b68b2146f5b2f98dd33ac84 https://www.encodeproject.org/files/ENCFF627XYQ/@@download/ENCFF627XYQ.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF145VRC bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF807WOU 1424580326 ENCODE Processing Pipeline 3401aea2cea36d05412fe0954c0c318f https://www.encodeproject.org/files/ENCFF145VRC/@@download/ENCFF145VRC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126DKX bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF643CGH 1912101768 ENCODE Processing Pipeline 58b4a24171a65b977ab213c2980d4cc8 https://www.encodeproject.org/files/ENCFF126DKX/@@download/ENCFF126DKX.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF575LRB bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF643CGH, ENCFF810FJD, ENCFF976CUE 4521399020 ENCODE Processing Pipeline 89b7ecb31e47f1086430c4199d429297 https://www.encodeproject.org/files/ENCFF575LRB/@@download/ENCFF575LRB.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF024SWK bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF643CGH, ENCFF896JQM 3930416888 ENCODE Processing Pipeline 24dd3bb0188880b0d3e5485ca459e4c6 https://www.encodeproject.org/files/ENCFF024SWK/@@download/ENCFF024SWK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF254LLT bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF643CGH, ENCFF801FWC 3890414007 ENCODE Processing Pipeline 04778eb9876aca243fc9960579bd3a1f https://www.encodeproject.org/files/ENCFF254LLT/@@download/ENCFF254LLT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF615VMZ bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF643CGH 4002336687 ENCODE Processing Pipeline eb68616129791dacb05b6d95aafdcb63 https://www.encodeproject.org/files/ENCFF615VMZ/@@download/ENCFF615VMZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF895OOM bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF643CGH 787068594 ENCODE Processing Pipeline bff009d674d57b57f4752f78960998fc https://www.encodeproject.org/files/ENCFF895OOM/@@download/ENCFF895OOM.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF092EIK bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF643CGH, ENCFF921JLH 1257875124 ENCODE Processing Pipeline e5017a41f9b7e81d2cfb35afd9088f44 https://www.encodeproject.org/files/ENCFF092EIK/@@download/ENCFF092EIK.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF196XHX bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF643CGH, ENCFF998QDV 4643570241 ENCODE Processing Pipeline 9206570428fe14fb94a272b29b453aa7 https://www.encodeproject.org/files/ENCFF196XHX/@@download/ENCFF196XHX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF764FEJ bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF643CGH, ENCFF781ZAP 4843526529 ENCODE Processing Pipeline 9792c90b539a9e0e7633a5c0a3a91c99 https://www.encodeproject.org/files/ENCFF764FEJ/@@download/ENCFF764FEJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF122TGF bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF643CGH, ENCFF975TEJ 5145634491 ENCODE Processing Pipeline 761644555843e7c46a1834cbe240fcb9 https://www.encodeproject.org/files/ENCFF122TGF/@@download/ENCFF122TGF.bam GRCh38 released ENCFF914TEL bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF643CGH 5707839605 ENCODE Processing Pipeline ecf62f841bc83027b2bb333d628be15d https://www.encodeproject.org/files/ENCFF914TEL/@@download/ENCFF914TEL.bam GRCh38 released ENCFF132KSK bam alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF643CGH, ENCFF858ZHX 1651549827 ENCODE Processing Pipeline 27f4e73a46a13118be5f08794eb12121 https://www.encodeproject.org/files/ENCFF132KSK/@@download/ENCFF132KSK.bam GRCh38 released low read depth, antibody characterized with exemption missing control alignments ENCFF529KBB bam alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF643CGH, ENCFF916HDR 2981278863 ENCODE Processing Pipeline eddfa78cf91f6e433872f18f3402ab0e https://www.encodeproject.org/files/ENCFF529KBB/@@download/ENCFF529KBB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF406TJQ bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF643CGH 6407032095 ENCODE Processing Pipeline 18a0c9d6a47a554c9772b70dc05bc07b https://www.encodeproject.org/files/ENCFF406TJQ/@@download/ENCFF406TJQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF446HGS bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF643CGH, ENCFF814WTW, ENCFF975CDD 6356564725 ENCODE Processing Pipeline 2168631538bd99fb02c79dc3a9a1b398 https://www.encodeproject.org/files/ENCFF446HGS/@@download/ENCFF446HGS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF196PFK bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF643CGH 3951727123 ENCODE Processing Pipeline f6c9ccb23b72d964329474ea2a5d3466 https://www.encodeproject.org/files/ENCFF196PFK/@@download/ENCFF196PFK.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF785DDR bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF643CGH, ENCFF964LGL 5061711862 ENCODE Processing Pipeline f419dd9fd6dddd6ce7c4d7f3a03d0144 https://www.encodeproject.org/files/ENCFF785DDR/@@download/ENCFF785DDR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF260GTK bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF643CGH 1087133919 ENCODE Processing Pipeline fc62cee406e7457c9d38482235918e55 https://www.encodeproject.org/files/ENCFF260GTK/@@download/ENCFF260GTK.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF667AGZ bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF643CGH, ENCFF961WCQ 1087531017 ENCODE Processing Pipeline f8c04c5ef0fa808a199fab0c829de7f6 https://www.encodeproject.org/files/ENCFF667AGZ/@@download/ENCFF667AGZ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF236GOA bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF643CGH 3241851579 ENCODE Processing Pipeline af06966b5edc76baee5fdfeb4e239d15 https://www.encodeproject.org/files/ENCFF236GOA/@@download/ENCFF236GOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF785FLS bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF643CGH, ENCFF805JBH 3160883822 ENCODE Processing Pipeline 2d335a54a7838ff9c17951f74a2536a8 https://www.encodeproject.org/files/ENCFF785FLS/@@download/ENCFF785FLS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF456NWN bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF896YTL 1783881200 ENCODE Processing Pipeline d84524bf97bfd9fc6f3cd860e7c4880a https://www.encodeproject.org/files/ENCFF456NWN/@@download/ENCFF456NWN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF331YOR bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF643CGH 1758746482 ENCODE Processing Pipeline 90cc60b7e789ab9ac1378be6929e4f8d https://www.encodeproject.org/files/ENCFF331YOR/@@download/ENCFF331YOR.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF346DYT bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF643CGH 5355982268 ENCODE Processing Pipeline 1ba03b23e1a5ad29b476b0e65bc107ed https://www.encodeproject.org/files/ENCFF346DYT/@@download/ENCFF346DYT.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF731EKP bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF643CGH 5032479600 ENCODE Processing Pipeline b594f7b0e8b0f4da9989d60e2dfd1ef6 https://www.encodeproject.org/files/ENCFF731EKP/@@download/ENCFF731EKP.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF464HDX bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF643CGH 4479798122 ENCODE Processing Pipeline fb43a94a880b289bacbc5ee19f93a558 https://www.encodeproject.org/files/ENCFF464HDX/@@download/ENCFF464HDX.bam GRCh38 released borderline replicate concordance ENCFF435ZLQ bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF643CGH, ENCFF939DJP 5747344626 ENCODE Processing Pipeline aaef0172e67e1f18ac98132611b07734 https://www.encodeproject.org/files/ENCFF435ZLQ/@@download/ENCFF435ZLQ.bam GRCh38 released borderline replicate concordance ENCFF482HZN bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF643CGH, ENCFF706MMH 967779560 ENCODE Processing Pipeline dcef204c4e007ccadf2916e3216e18d5 https://www.encodeproject.org/files/ENCFF482HZN/@@download/ENCFF482HZN.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF467UCR bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF643CGH, ENCFF768XYK 2190985471 ENCODE Processing Pipeline ce73fb8a45ab6454ccecc5f8a20ed3de https://www.encodeproject.org/files/ENCFF467UCR/@@download/ENCFF467UCR.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF618RFZ bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF643CGH, ENCFF843CJY 4715181415 ENCODE Processing Pipeline 604e782b6d6521363fd12c15bd543910 https://www.encodeproject.org/files/ENCFF618RFZ/@@download/ENCFF618RFZ.bam GRCh38 released ENCFF950DAI bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF643CGH 5617502332 ENCODE Processing Pipeline 9942fabd403c60967a549472e7a9b76d https://www.encodeproject.org/files/ENCFF950DAI/@@download/ENCFF950DAI.bam GRCh38 released ENCFF753MGD bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF720DMM 966382220 ENCODE Processing Pipeline bc7caec21b623db61ec3a7189965b476 https://www.encodeproject.org/files/ENCFF753MGD/@@download/ENCFF753MGD.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF531SFF bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF643CGH 1399392666 ENCODE Processing Pipeline 58cab34339e20cd3b9349999ea9c02a4 https://www.encodeproject.org/files/ENCFF531SFF/@@download/ENCFF531SFF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF008CUX bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF643CGH, ENCFF902KOT 2160188884 ENCODE Processing Pipeline b634b7a7acd2cb6dc69ee3e787289408 https://www.encodeproject.org/files/ENCFF008CUX/@@download/ENCFF008CUX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF549MBS bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF643CGH 1859190467 ENCODE Processing Pipeline 96f614ace15c64570d5b67b0189c3311 https://www.encodeproject.org/files/ENCFF549MBS/@@download/ENCFF549MBS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF402HWO bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF643CGH 1149636130 ENCODE Processing Pipeline b808f3711646b53716a1083990359530 https://www.encodeproject.org/files/ENCFF402HWO/@@download/ENCFF402HWO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF932YLF bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF643CGH 1247739437 ENCODE Processing Pipeline 5ca1e940e0e1da0e8c8894a937f05ba1 https://www.encodeproject.org/files/ENCFF932YLF/@@download/ENCFF932YLF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF565AIC bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF643CGH, ENCFF803NZA 5685083770 ENCODE Processing Pipeline 474a7246b5d60695db48cf6bed21f8b8 https://www.encodeproject.org/files/ENCFF565AIC/@@download/ENCFF565AIC.bam GRCh38 released ENCFF540GWM bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF643CGH, ENCFF892KUR 7546459900 ENCODE Processing Pipeline 6fca1355cb3f023805d69c2f566e495e https://www.encodeproject.org/files/ENCFF540GWM/@@download/ENCFF540GWM.bam GRCh38 released ENCFF316VFC bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF643CGH, ENCFF668JXE 7979487574 ENCODE Processing Pipeline 27ec5481ad1f819fa5788d96415d36df https://www.encodeproject.org/files/ENCFF316VFC/@@download/ENCFF316VFC.bam GRCh38 released NTR biosample ENCFF381IZD bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF643CGH 8818318160 ENCODE Processing Pipeline e7ce43d1c9658b3367564f4c34d8045b https://www.encodeproject.org/files/ENCFF381IZD/@@download/ENCFF381IZD.bam GRCh38 released NTR biosample ENCFF951XSM bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF643CGH, ENCFF862ENY 4024272863 ENCODE Processing Pipeline cf697d4de7d37fc7858b24a19cb1275a https://www.encodeproject.org/files/ENCFF951XSM/@@download/ENCFF951XSM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF608KCO bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF643CGH 5459961366 ENCODE Processing Pipeline 0ca966bf42906127427b00ef708bc0b2 https://www.encodeproject.org/files/ENCFF608KCO/@@download/ENCFF608KCO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF188HPV bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF643CGH, ENCFF722QNA, ENCFF899JCP 5569845124 ENCODE Processing Pipeline 2d75bb215c6e323731fd7cd77cf68aab https://www.encodeproject.org/files/ENCFF188HPV/@@download/ENCFF188HPV.bam GRCh38 released borderline replicate concordance ENCFF542LVJ bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF771ONE, ENCFF840RUR 4774729465 ENCODE Processing Pipeline 99dcd1557cb83f0fcdebdcdf2ee1e365 https://www.encodeproject.org/files/ENCFF542LVJ/@@download/ENCFF542LVJ.bam GRCh38 released borderline replicate concordance ENCFF371TIX bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF643CGH, ENCFF780PZK 7767633549 ENCODE Processing Pipeline 7c5c6ffe7a6a4b6c78bc1f3a84e9a012 https://www.encodeproject.org/files/ENCFF371TIX/@@download/ENCFF371TIX.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF766RZV bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF672YYT, ENCFF953SOH 5039395951 ENCODE Processing Pipeline 0a19fac142a146ff014a6efde0993dc6 https://www.encodeproject.org/files/ENCFF766RZV/@@download/ENCFF766RZV.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF351FEV bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF643CGH 3499977686 ENCODE Processing Pipeline a493d38adc06bf83357ad5a800e467ea https://www.encodeproject.org/files/ENCFF351FEV/@@download/ENCFF351FEV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF228WYN bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF643CGH, ENCFF687ONI 3329220638 ENCODE Processing Pipeline b6e813464507295d30a9a7c0da6ef4d1 https://www.encodeproject.org/files/ENCFF228WYN/@@download/ENCFF228WYN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF939EOP bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF643CGH, ENCFF696OAD 4626378835 ENCODE Processing Pipeline f0379d8ca2fbb0caff5151de5a054c4a https://www.encodeproject.org/files/ENCFF939EOP/@@download/ENCFF939EOP.bam GRCh38 released mild to moderate bottlenecking ENCFF207SAV bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF643CGH, ENCFF774IAM 4521449078 ENCODE Processing Pipeline e00d83bf646b942b6c848e2702cd0330 https://www.encodeproject.org/files/ENCFF207SAV/@@download/ENCFF207SAV.bam GRCh38 released mild to moderate bottlenecking ENCFF991OZB bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF643CGH, ENCFF905VYB 4139974324 ENCODE Processing Pipeline 43fb627d8f840bd8aae4573d12e11924 https://www.encodeproject.org/files/ENCFF991OZB/@@download/ENCFF991OZB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF933BBF bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF643CGH, ENCFF653JCP 5854062140 ENCODE Processing Pipeline 7071525d567f680763ad7601ca5ed891 https://www.encodeproject.org/files/ENCFF933BBF/@@download/ENCFF933BBF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF026KBE bam alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF706ERC, ENCFF797OQU 3140239571 ENCODE Processing Pipeline 676577b541aed38b5af211a635fcc3ad https://www.encodeproject.org/files/ENCFF026KBE/@@download/ENCFF026KBE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF267XGD bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF643CGH, ENCFF808AUX 4995463580 ENCODE Processing Pipeline 985ab813d45fc5fc97688c7bfdaa50f1 https://www.encodeproject.org/files/ENCFF267XGD/@@download/ENCFF267XGD.bam GRCh38 released antibody characterized with exemption ENCFF037MZM bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF643CGH, ENCFF991XUU 6108274787 ENCODE Processing Pipeline dadde76d924a0aa32e14afe6980ff8b5 https://www.encodeproject.org/files/ENCFF037MZM/@@download/ENCFF037MZM.bam GRCh38 released antibody characterized with exemption ENCFF144HGJ bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF643CGH, ENCFF977ONA 4676595021 ENCODE Processing Pipeline 867a64794afd2c9ba20c82cf73cf9de5 https://www.encodeproject.org/files/ENCFF144HGJ/@@download/ENCFF144HGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF834KLZ bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF643CGH, ENCFF748THJ 4942866493 ENCODE Processing Pipeline c6f395b792b64c6ae86600e0d2eb25fd https://www.encodeproject.org/files/ENCFF834KLZ/@@download/ENCFF834KLZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF422MGR bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF643CGH 3865662879 ENCODE Processing Pipeline d02b1e92885d9111a7c5c30eebf8a252 https://www.encodeproject.org/files/ENCFF422MGR/@@download/ENCFF422MGR.bam GRCh38 released mild to moderate bottlenecking ENCFF276FCZ bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF643CGH 5861372449 ENCODE Processing Pipeline c97a60216daed0ed43d5a6faa48ded10 https://www.encodeproject.org/files/ENCFF276FCZ/@@download/ENCFF276FCZ.bam GRCh38 released mild to moderate bottlenecking ENCFF157WFG bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF643CGH 593942400 ENCODE Processing Pipeline f051bf36dcc70c92832d5614f55ae7d8 https://www.encodeproject.org/files/ENCFF157WFG/@@download/ENCFF157WFG.bam GRCh38 released low read length, low read depth ENCFF372NDR bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF643CGH 633932582 ENCODE Processing Pipeline 666656120a552574dacdea095fe265cd https://www.encodeproject.org/files/ENCFF372NDR/@@download/ENCFF372NDR.bam GRCh38 released low read length, low read depth ENCFF172VKG bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF643CGH, ENCFF986FXN 3054260712 ENCODE Processing Pipeline 9804f71a6b669a87ea1bc41e881127ca https://www.encodeproject.org/files/ENCFF172VKG/@@download/ENCFF172VKG.bam GRCh38 released experiment not submitted to GEO ENCFF670OVZ bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF643CGH, ENCFF718YAQ 3310604531 ENCODE Processing Pipeline 178f6e68cc09b817e1a3f3a20ec82afa https://www.encodeproject.org/files/ENCFF670OVZ/@@download/ENCFF670OVZ.bam GRCh38 released experiment not submitted to GEO ENCFF929HOD bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF643CGH, ENCFF832CXC 3932158263 ENCODE Processing Pipeline 8646abaa9a3124fe215790a98b3b617f https://www.encodeproject.org/files/ENCFF929HOD/@@download/ENCFF929HOD.bam GRCh38 released ENCFF397CSO bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF643CGH 5433458132 ENCODE Processing Pipeline d7eb5f605a36961a0127d202cc5b8ab2 https://www.encodeproject.org/files/ENCFF397CSO/@@download/ENCFF397CSO.bam GRCh38 released ENCFF241GJI bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF643CGH 3841999035 ENCODE Processing Pipeline e3660e1d174cbb602701af35f3443c2e https://www.encodeproject.org/files/ENCFF241GJI/@@download/ENCFF241GJI.bam GRCh38 released borderline replicate concordance ENCFF647FZE bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF643CGH 4660087292 ENCODE Processing Pipeline e8cff35f5db71542f07f15b8cb5119fd https://www.encodeproject.org/files/ENCFF647FZE/@@download/ENCFF647FZE.bam GRCh38 released borderline replicate concordance ENCFF623VUZ bam alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF643CGH, ENCFF745ORG 3300449029 ENCODE Processing Pipeline 50fc79194d386a3a451b8fbf341a7a15 https://www.encodeproject.org/files/ENCFF623VUZ/@@download/ENCFF623VUZ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF533BQE bam alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF643CGH 3981961601 ENCODE Processing Pipeline 1eed2c39cd4bbb4f3796f59d69de30f5 https://www.encodeproject.org/files/ENCFF533BQE/@@download/ENCFF533BQE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF491YAV bam alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF643CGH 4473112256 ENCODE Processing Pipeline 75e7e727f61b5bdd64738a76de3a7cae https://www.encodeproject.org/files/ENCFF491YAV/@@download/ENCFF491YAV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF665YIS bam alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF643CGH, ENCFF784WOU 2954908399 ENCODE Processing Pipeline fe6df9d044100c34defb3ec76c5cc60d https://www.encodeproject.org/files/ENCFF665YIS/@@download/ENCFF665YIS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF480MSL bam alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF643CGH 4526660583 ENCODE Processing Pipeline bcdfe1d30d57942605398e76aa41902a https://www.encodeproject.org/files/ENCFF480MSL/@@download/ENCFF480MSL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF629JEH bam alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF643CGH 4061238100 ENCODE Processing Pipeline 794fc72d04c0b598658254869ce4feb8 https://www.encodeproject.org/files/ENCFF629JEH/@@download/ENCFF629JEH.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF195AYY bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF643CGH, ENCFF722QHD 3635029028 ENCODE Processing Pipeline 0fe99674bd077ee43bc13da19330b74d https://www.encodeproject.org/files/ENCFF195AYY/@@download/ENCFF195AYY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF364EXI bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF814CIF, ENCFF860HSN 4250208608 ENCODE Processing Pipeline 6f9ca35da234698e519660206222d835 https://www.encodeproject.org/files/ENCFF364EXI/@@download/ENCFF364EXI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF122LWT bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF643CGH, ENCFF773RRJ, ENCFF864GSN 3546990955 ENCODE Processing Pipeline b19876d1a94f87c1b135aaa7a1f0c364 https://www.encodeproject.org/files/ENCFF122LWT/@@download/ENCFF122LWT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF676MWP bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF643CGH 3727814272 ENCODE Processing Pipeline e8159593ed072e2813f33b5c7b8ef0f9 https://www.encodeproject.org/files/ENCFF676MWP/@@download/ENCFF676MWP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF253HOC bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF643CGH, ENCFF711WIA 3999119712 ENCODE Processing Pipeline 6dbf2c03d57b5bed5acbc5fa771565b5 https://www.encodeproject.org/files/ENCFF253HOC/@@download/ENCFF253HOC.bam GRCh38 released missing genetic modification characterization ENCFF773DBT bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF643CGH, ENCFF683PDC 4495155363 ENCODE Processing Pipeline 0a2eac8cf5eea65727dac6c5682efdf9 https://www.encodeproject.org/files/ENCFF773DBT/@@download/ENCFF773DBT.bam GRCh38 released missing genetic modification characterization ENCFF800LNC bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF643CGH 4395421470 ENCODE Processing Pipeline ea7fd302fed3e38bc4068c9a8be85ef7 https://www.encodeproject.org/files/ENCFF800LNC/@@download/ENCFF800LNC.bam GRCh38 released ENCFF387SQL bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF643CGH 4226828245 ENCODE Processing Pipeline 9cd92860d51ecb44a977bf6f3b32562e https://www.encodeproject.org/files/ENCFF387SQL/@@download/ENCFF387SQL.bam GRCh38 released ENCFF167NTI bam alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF643CGH, ENCFF851YSO 2519291132 ENCODE Processing Pipeline c37f9899ac8ec219a350a89360b6c1e8 https://www.encodeproject.org/files/ENCFF167NTI/@@download/ENCFF167NTI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF570SBS bam alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF643CGH 615697818 ENCODE Processing Pipeline 150808551513688af73a414c6c5ca00d https://www.encodeproject.org/files/ENCFF570SBS/@@download/ENCFF570SBS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF904OXK bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF643CGH, ENCFF749RRK 1897347970 ENCODE Processing Pipeline 3e656a2cd3cd0b5f934b75c2bc387942 https://www.encodeproject.org/files/ENCFF904OXK/@@download/ENCFF904OXK.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF077NYA bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF643CGH 4697667356 ENCODE Processing Pipeline c34bb214c8b862fd5c5faf573b383fc0 https://www.encodeproject.org/files/ENCFF077NYA/@@download/ENCFF077NYA.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF551QCP bam alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF643CGH 2988508711 ENCODE Processing Pipeline f748911c9b4b15e90f18caaafcf2e9fa https://www.encodeproject.org/files/ENCFF551QCP/@@download/ENCFF551QCP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF434YXL bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF643CGH, ENCFF768KWX 4148204325 ENCODE Processing Pipeline b06bbe88cf322187b93063b771d5ae39 https://www.encodeproject.org/files/ENCFF434YXL/@@download/ENCFF434YXL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF649ORS bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF643CGH, ENCFF649JEY 4280927008 ENCODE Processing Pipeline c06303bcd9e0c65b9a75b913fc0e76c6 https://www.encodeproject.org/files/ENCFF649ORS/@@download/ENCFF649ORS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF519CKE bam alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF643CGH, ENCFF775BKO 2505125822 ENCODE Processing Pipeline 5588efbf3d55b258634d98eb3c0b4898 https://www.encodeproject.org/files/ENCFF519CKE/@@download/ENCFF519CKE.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF207LND bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF643CGH, ENCFF949LLJ 4597515174 ENCODE Processing Pipeline 80a0c86c3e1cf810dc17a9335f87dc53 https://www.encodeproject.org/files/ENCFF207LND/@@download/ENCFF207LND.bam GRCh38 released ENCFF541XEW bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF643CGH 4885837359 ENCODE Processing Pipeline c87ab64d67941ce976f74ef436a7f823 https://www.encodeproject.org/files/ENCFF541XEW/@@download/ENCFF541XEW.bam GRCh38 released ENCFF714QBW bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF643CGH, ENCFF761YLA 6052027234 ENCODE Processing Pipeline fe957094376d6091d026897a73c1b41d https://www.encodeproject.org/files/ENCFF714QBW/@@download/ENCFF714QBW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF342JBG bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF643CGH, ENCFF697UGT 7954118102 ENCODE Processing Pipeline b431200c7155b163c2a5810ffbe3c6c0 https://www.encodeproject.org/files/ENCFF342JBG/@@download/ENCFF342JBG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF369YVA bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF643CGH 4840675299 ENCODE Processing Pipeline 23f195df37760c3add5ebdecdd376b32 https://www.encodeproject.org/files/ENCFF369YVA/@@download/ENCFF369YVA.bam GRCh38 released ENCFF761YGL bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF643CGH 5278209109 ENCODE Processing Pipeline bb7b2dd9d06bbbec97fc557ec5775511 https://www.encodeproject.org/files/ENCFF761YGL/@@download/ENCFF761YGL.bam GRCh38 released ENCFF702FFH bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF643CGH, ENCFF905FGU 4212057344 ENCODE Processing Pipeline b55d70319ae7b48f1df5cf5f308ab3a2 https://www.encodeproject.org/files/ENCFF702FFH/@@download/ENCFF702FFH.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF971SDE bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF643CGH, ENCFF715YUU, ENCFF717UVU 4551870416 ENCODE Processing Pipeline 0f8fa2f3dad816a5d505e8d3b9b933e7 https://www.encodeproject.org/files/ENCFF971SDE/@@download/ENCFF971SDE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF541QJE bam alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF643CGH 2871258437 ENCODE Processing Pipeline 23c48dc2c032ac334df13ab8ece12943 https://www.encodeproject.org/files/ENCFF541QJE/@@download/ENCFF541QJE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF528OBT bam alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF643CGH, ENCFF996YRU 2863670402 ENCODE Processing Pipeline d7bc376b942aa694b780c6c7db2bb444 https://www.encodeproject.org/files/ENCFF528OBT/@@download/ENCFF528OBT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112UBX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF643CGH 2620812375 ENCODE Processing Pipeline 5aee8da56116d72d05be57fc74c989f3 https://www.encodeproject.org/files/ENCFF112UBX/@@download/ENCFF112UBX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF116EPL bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF643CGH 3444103327 ENCODE Processing Pipeline 3e18f20a967992ad4ab4a304a8489d45 https://www.encodeproject.org/files/ENCFF116EPL/@@download/ENCFF116EPL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246CLD bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF643CGH 3215226032 ENCODE Processing Pipeline dc0315876240e3cfe3dcec4785e77fad https://www.encodeproject.org/files/ENCFF246CLD/@@download/ENCFF246CLD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF104VVO bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643CGH, ENCFF928ZAS, ENCFF971CJJ 3797103587 ENCODE Processing Pipeline 5ee3f125e8d13f2be45c7f4c68ca620d https://www.encodeproject.org/files/ENCFF104VVO/@@download/ENCFF104VVO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF271HNN bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF643CGH, ENCFF675BIJ 1745608391 ENCODE Processing Pipeline e53b8ba2debfd31c52e3b73dc83fbc1e https://www.encodeproject.org/files/ENCFF271HNN/@@download/ENCFF271HNN.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF644FOH bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF643CGH 6777688375 ENCODE Processing Pipeline c94cb92db37ae0cd26ab472f34cb2c4e https://www.encodeproject.org/files/ENCFF644FOH/@@download/ENCFF644FOH.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF125WGU bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF700ORL, ENCFF969XQA 7416468777 ENCODE Processing Pipeline e900821ad477f1aa76eac9da1b8dffad https://www.encodeproject.org/files/ENCFF125WGU/@@download/ENCFF125WGU.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF881MAH bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF643CGH, ENCFF783BKL 8760651580 ENCODE Processing Pipeline f7ea73e78b3d94afffd73bee359710d4 https://www.encodeproject.org/files/ENCFF881MAH/@@download/ENCFF881MAH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF980YNA bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF643CGH, ENCFF903EIQ 897427953 ENCODE Processing Pipeline 0a8f3fb2c56241f5a823f48881f3d732 https://www.encodeproject.org/files/ENCFF980YNA/@@download/ENCFF980YNA.bam GRCh38 released missing genetic modification characterization ENCFF564FBJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF643CGH 1107993140 ENCODE Processing Pipeline 3b7c352c7bc811507cabe173b6b2aefe https://www.encodeproject.org/files/ENCFF564FBJ/@@download/ENCFF564FBJ.bam GRCh38 released missing genetic modification characterization ENCFF521MLQ bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF643CGH 3984373690 ENCODE Processing Pipeline ca1e3cc68633fb27cf765a3ca114a3c1 https://www.encodeproject.org/files/ENCFF521MLQ/@@download/ENCFF521MLQ.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF804JSK bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF643CGH 4783866131 ENCODE Processing Pipeline 13bba08f5d3efae182df31f692a70bc7 https://www.encodeproject.org/files/ENCFF804JSK/@@download/ENCFF804JSK.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF384DMV bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF643CGH, ENCFF992IHE 2971337301 ENCODE Processing Pipeline f0ef5a211065d1aaab028502ce72c1c0 https://www.encodeproject.org/files/ENCFF384DMV/@@download/ENCFF384DMV.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF730MAX bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF643CGH, ENCFF943GMA 3336769898 ENCODE Processing Pipeline 200da345b440cd9911130b525aa562e1 https://www.encodeproject.org/files/ENCFF730MAX/@@download/ENCFF730MAX.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF969XIH bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF643CGH, ENCFF738LVY 9044929299 ENCODE Processing Pipeline f29dbc3c932926bdc129cc4bec7a74c8 https://www.encodeproject.org/files/ENCFF969XIH/@@download/ENCFF969XIH.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF871WHM bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF777QMW, ENCFF810YUG 9081925106 ENCODE Processing Pipeline aeb4d11920e3cad1b669e10a9fa73dc0 https://www.encodeproject.org/files/ENCFF871WHM/@@download/ENCFF871WHM.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF923ISY bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF643CGH 2679360550 ENCODE Processing Pipeline e16918baf1704eb423114ef306f8fd48 https://www.encodeproject.org/files/ENCFF923ISY/@@download/ENCFF923ISY.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF942SZJ bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF643CGH 4997082449 ENCODE Processing Pipeline 31d5107c9f7b9361cc3adba7b698e3e6 https://www.encodeproject.org/files/ENCFF942SZJ/@@download/ENCFF942SZJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF829XLC bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF643CGH, ENCFF684JBQ 3781074241 ENCODE Processing Pipeline 9ba5be4b5bd3ecc30911e165f142804b https://www.encodeproject.org/files/ENCFF829XLC/@@download/ENCFF829XLC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF771KEQ bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF643CGH 6328776224 ENCODE Processing Pipeline 44d76c726cbb618ee906d738047f33d7 https://www.encodeproject.org/files/ENCFF771KEQ/@@download/ENCFF771KEQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF500VJD bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF643CGH, ENCFF747RJL 7276086794 ENCODE Processing Pipeline 2beb242679b11332e24e800de9463d1a https://www.encodeproject.org/files/ENCFF500VJD/@@download/ENCFF500VJD.bam GRCh38 released mild to moderate bottlenecking ENCFF117GZZ bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF643CGH, ENCFF681LMY, ENCFF863ZTU 9974983826 ENCODE Processing Pipeline d1c5a1206ad36293c44ae5279aad5b62 https://www.encodeproject.org/files/ENCFF117GZZ/@@download/ENCFF117GZZ.bam GRCh38 released mild to moderate bottlenecking ENCFF007NAL bam alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF643CGH, ENCFF956QIS 3401176283 ENCODE Processing Pipeline 4c5a470a76e477260ca9b2a402bd514a https://www.encodeproject.org/files/ENCFF007NAL/@@download/ENCFF007NAL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF060HQQ bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF643CGH 1025033935 ENCODE Processing Pipeline bf6cd23c39fea99b0bff79620cb4bd9e https://www.encodeproject.org/files/ENCFF060HQQ/@@download/ENCFF060HQQ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304FMS bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF643CGH 1372373143 ENCODE Processing Pipeline f5430cd6729bf638433f99e7313375ab https://www.encodeproject.org/files/ENCFF304FMS/@@download/ENCFF304FMS.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF238MUN bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF260FBF, ENCFF643CGH 668966183 ENCODE Processing Pipeline b41302d4970f8f36da474d4ba798dba1 https://www.encodeproject.org/files/ENCFF238MUN/@@download/ENCFF238MUN.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF684QYE bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF697NYE 688163437 ENCODE Processing Pipeline db3862aae93f1e435c6780b5c31c3145 https://www.encodeproject.org/files/ENCFF684QYE/@@download/ENCFF684QYE.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF928HGU bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF643CGH, ENCFF811IJJ 6877429169 ENCODE Processing Pipeline 88ce46251c4c179cb5d37b841441ad75 https://www.encodeproject.org/files/ENCFF928HGU/@@download/ENCFF928HGU.bam GRCh38 released NTR biosample ENCFF092CVQ bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF643CGH, ENCFF792PVA 11068159225 ENCODE Processing Pipeline 585580e0edd8ea49834ee7806a3df4b6 https://www.encodeproject.org/files/ENCFF092CVQ/@@download/ENCFF092CVQ.bam GRCh38 released NTR biosample ENCFF468LGZ bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF643CGH 1076580199 ENCODE Processing Pipeline 319d3e1a3272167f9aa0fd056493b8cd https://www.encodeproject.org/files/ENCFF468LGZ/@@download/ENCFF468LGZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF092TPD bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF643CGH 1337530886 ENCODE Processing Pipeline 9fc7b165611d6ecc6255a1df502bcbe2 https://www.encodeproject.org/files/ENCFF092TPD/@@download/ENCFF092TPD.bam GRCh38 released borderline replicate concordance, low read depth ENCFF162MTY bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF643CGH 1054788070 ENCODE Processing Pipeline a40d0f581f1c9bd8b90a08894ca0d60f https://www.encodeproject.org/files/ENCFF162MTY/@@download/ENCFF162MTY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF614KRR bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF964RPP 1056986153 ENCODE Processing Pipeline 76947ec6ef90e32b1ccc6463e389d3f9 https://www.encodeproject.org/files/ENCFF614KRR/@@download/ENCFF614KRR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF698NSE bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF643CGH 1034909066 ENCODE Processing Pipeline 684e844609f75d596b0ab5991f6e55b5 https://www.encodeproject.org/files/ENCFF698NSE/@@download/ENCFF698NSE.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF662NBQ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF643CGH, ENCFF932ZZU 1406049840 ENCODE Processing Pipeline 58aae4ae0e9080cbedb9451715d336ef https://www.encodeproject.org/files/ENCFF662NBQ/@@download/ENCFF662NBQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF294DBF bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF643CGH 2334268629 ENCODE Processing Pipeline 6a5e5759c17fa5c66df22f752bdcb77e https://www.encodeproject.org/files/ENCFF294DBF/@@download/ENCFF294DBF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF334OKF bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF643CGH 2961520443 ENCODE Processing Pipeline 9dccde4aaab5586ad2109c3f23ba28d2 https://www.encodeproject.org/files/ENCFF334OKF/@@download/ENCFF334OKF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF723BUZ bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF643CGH, ENCFF898UXT, ENCFF971OYB 4306488549 ENCODE Processing Pipeline cbef63f55eda36d139febdc1659b7506 https://www.encodeproject.org/files/ENCFF723BUZ/@@download/ENCFF723BUZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF739YFP bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF643CGH 5422320753 ENCODE Processing Pipeline dcc967b32da0fa3d6fbca2e1a09cfc6f https://www.encodeproject.org/files/ENCFF739YFP/@@download/ENCFF739YFP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF945TUI bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF105YSI, ENCFF643CGH, ENCFF719JFL 2587784021 ENCODE Processing Pipeline 06877fe217c320e22b3f96905f27045c https://www.encodeproject.org/files/ENCFF945TUI/@@download/ENCFF945TUI.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF581SOT bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF034LKJ, ENCFF118PSY, ENCFF643CGH 3624746817 ENCODE Processing Pipeline c709171119cfae5cc18b07a31afa3c44 https://www.encodeproject.org/files/ENCFF581SOT/@@download/ENCFF581SOT.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF693JVP bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF643CGH 1292681710 ENCODE Processing Pipeline 3e7afc416ecf184abc9225e08f265068 https://www.encodeproject.org/files/ENCFF693JVP/@@download/ENCFF693JVP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF620VNP bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF643CGH 1577752157 ENCODE Processing Pipeline d419d5d8c1b5d76af4be1e87a0998402 https://www.encodeproject.org/files/ENCFF620VNP/@@download/ENCFF620VNP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization ENCFF888DOH bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF643CGH, ENCFF947KVR 2062638700 ENCODE Processing Pipeline 6128d331931a1a81e358e5b19dae1609 https://www.encodeproject.org/files/ENCFF888DOH/@@download/ENCFF888DOH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF234ALA bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF643CGH, ENCFF855HOA 1770694717 ENCODE Processing Pipeline 374542a54935763790d6f45f1c69fedd https://www.encodeproject.org/files/ENCFF234ALA/@@download/ENCFF234ALA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF511AWC bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF643CGH, ENCFF814VNS, ENCFF911EMT 4542334165 ENCODE Processing Pipeline d35908169de894c59bd8ef9f2c9986da https://www.encodeproject.org/files/ENCFF511AWC/@@download/ENCFF511AWC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF006YQA bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF643CGH 5172103368 ENCODE Processing Pipeline 394a227b30607c1f28491f65f81bcb0d https://www.encodeproject.org/files/ENCFF006YQA/@@download/ENCFF006YQA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF670XGC bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF643CGH, ENCFF702MIH 3536875158 ENCODE Processing Pipeline e7df9b23c9c225d5d372b433c9eca01e https://www.encodeproject.org/files/ENCFF670XGC/@@download/ENCFF670XGC.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF481DGS bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF643CGH 4020770417 ENCODE Processing Pipeline b5b3611376b4be73a8d96d198c73ed63 https://www.encodeproject.org/files/ENCFF481DGS/@@download/ENCFF481DGS.bam GRCh38 released borderline replicate concordance duplicate lane review ENCFF444NCW bam alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF643CGH, ENCFF858MFW 3211482238 ENCODE Processing Pipeline 9434f70f66173446886126ade6f1a510 https://www.encodeproject.org/files/ENCFF444NCW/@@download/ENCFF444NCW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF467EPK bam alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF643CGH 4887815357 ENCODE Processing Pipeline 5d6a0d51a0153132b3436cf26548dda7 https://www.encodeproject.org/files/ENCFF467EPK/@@download/ENCFF467EPK.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF169HTN bam alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF717LYI, ENCFF871GPP 5180266704 ENCODE Processing Pipeline fcb4cb4fe6f7aa396a79d272cbece828 https://www.encodeproject.org/files/ENCFF169HTN/@@download/ENCFF169HTN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF641OBF bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF643CGH 469676118 ENCODE Processing Pipeline a9205be45f820d034ddeecfa506dd283 https://www.encodeproject.org/files/ENCFF641OBF/@@download/ENCFF641OBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF408GAN bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF643CGH, ENCFF676SIM 510389308 ENCODE Processing Pipeline 9c2327e622a30c6c244e305107892f0c https://www.encodeproject.org/files/ENCFF408GAN/@@download/ENCFF408GAN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF723HAH bam alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF643CGH, ENCFF662XQN 4323740572 ENCODE Processing Pipeline 9a3e1895e4c4326b724804d0847bd2be https://www.encodeproject.org/files/ENCFF723HAH/@@download/ENCFF723HAH.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF408DIJ bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF948EZE 1959238495 ENCODE Processing Pipeline b30f51db99abbac2317b49f0beb209ad https://www.encodeproject.org/files/ENCFF408DIJ/@@download/ENCFF408DIJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF317HWD bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF914FOC 2188286279 ENCODE Processing Pipeline f6fd800b285c50e471c3b428c109b477 https://www.encodeproject.org/files/ENCFF317HWD/@@download/ENCFF317HWD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF959BPW bam alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF643CGH, ENCFF644XXX, ENCFF754KUW 4548438620 ENCODE Processing Pipeline 9e40f0bf9305ba55784c40c0c11d160d https://www.encodeproject.org/files/ENCFF959BPW/@@download/ENCFF959BPW.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF103HTZ bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF643CGH, ENCFF835TQN 7571766071 ENCODE Processing Pipeline c8968eb921d448f82a37a8231bd04c24 https://www.encodeproject.org/files/ENCFF103HTZ/@@download/ENCFF103HTZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF864BUV bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF643CGH 7520033153 ENCODE Processing Pipeline 2b74191a93e25d1546142efa483a86b7 https://www.encodeproject.org/files/ENCFF864BUV/@@download/ENCFF864BUV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF913AGP bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF660VHF 1759548215 ENCODE Processing Pipeline 6c0ab69d17d8f1a5b1c0314236e40d1c https://www.encodeproject.org/files/ENCFF913AGP/@@download/ENCFF913AGP.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF065ROU bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF764SMY 1932780468 ENCODE Processing Pipeline 310e3b8c183103c2ca7fc7ffb40db2e5 https://www.encodeproject.org/files/ENCFF065ROU/@@download/ENCFF065ROU.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF221XVM bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF643CGH, ENCFF858NEZ 1222236089 ENCODE Processing Pipeline 54165fe6de76ff77d1fb05229ef05689 https://www.encodeproject.org/files/ENCFF221XVM/@@download/ENCFF221XVM.bam GRCh38 released missing genetic modification characterization ENCFF042SJF bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF643CGH, ENCFF979UQU 1347079217 ENCODE Processing Pipeline 07b7ae8194db80c1071b83af6ef7721d https://www.encodeproject.org/files/ENCFF042SJF/@@download/ENCFF042SJF.bam GRCh38 released missing genetic modification characterization ENCFF161VHM bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF643CGH 440831033 ENCODE Processing Pipeline e38139e11bcec72e29c8df8f4d43f429 https://www.encodeproject.org/files/ENCFF161VHM/@@download/ENCFF161VHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF156OFZ bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF643CGH 500002236 ENCODE Processing Pipeline 063219ec05cabe6e16a9716e0871010c https://www.encodeproject.org/files/ENCFF156OFZ/@@download/ENCFF156OFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF648SHM bam alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF643CGH, ENCFF953YJK 6734618764 ENCODE Processing Pipeline ff63e32ec2b067013c9203066c9a0383 https://www.encodeproject.org/files/ENCFF648SHM/@@download/ENCFF648SHM.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF987NCX bam alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF643CGH, ENCFF871SZT 3663011387 ENCODE Processing Pipeline 120812ebeccba388e9db2d52c5359f62 https://www.encodeproject.org/files/ENCFF987NCX/@@download/ENCFF987NCX.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF294QEI bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF962ZIJ 1662108240 ENCODE Processing Pipeline d5b501719a61ccb2372efb70fa252286 https://www.encodeproject.org/files/ENCFF294QEI/@@download/ENCFF294QEI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF446MDK bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF919DQH 1837755848 ENCODE Processing Pipeline d2b4eed1f9ce8120089fc20590050114 https://www.encodeproject.org/files/ENCFF446MDK/@@download/ENCFF446MDK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF253XOS bam alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF643CGH, ENCFF653WRQ 2807845118 ENCODE Processing Pipeline b51abc604dc787564f2da70e4ab6abfd https://www.encodeproject.org/files/ENCFF253XOS/@@download/ENCFF253XOS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF567OGN bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF643CGH 1439307615 ENCODE Processing Pipeline eacd87f90e03493b1efaf0db49f8ea20 https://www.encodeproject.org/files/ENCFF567OGN/@@download/ENCFF567OGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF862HYK bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF790RMU 1848370199 ENCODE Processing Pipeline 83e8ec17c17d58c657507d98c8282a6f https://www.encodeproject.org/files/ENCFF862HYK/@@download/ENCFF862HYK.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF723QLF bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF643CGH, ENCFF859HQD 1294422536 ENCODE Processing Pipeline 5c7721dc205d71cde745ce46afe47ac3 https://www.encodeproject.org/files/ENCFF723QLF/@@download/ENCFF723QLF.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF195KYB bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF643CGH 1251882630 ENCODE Processing Pipeline a619723a11242fae875a66bca556ac90 https://www.encodeproject.org/files/ENCFF195KYB/@@download/ENCFF195KYB.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF236PLN bam alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF643CGH, ENCFF762GTE 6372370294 ENCODE Processing Pipeline d80602e1fa5bcad59056adc6c24b7efd https://www.encodeproject.org/files/ENCFF236PLN/@@download/ENCFF236PLN.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF953PIE bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF643CGH 1063126377 ENCODE Processing Pipeline d51d0b230939a69165560ace03031b4c https://www.encodeproject.org/files/ENCFF953PIE/@@download/ENCFF953PIE.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF417TWE bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF643CGH 1051152011 ENCODE Processing Pipeline 8f95e2600705c4416138bda2cea60ef6 https://www.encodeproject.org/files/ENCFF417TWE/@@download/ENCFF417TWE.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF698KWQ bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 50 ENCFF508PNU, ENCFF643CGH, ENCFF875NRZ 1417526938 ENCODE Processing Pipeline 855395168f3337357e5b00bdf5082aea https://www.encodeproject.org/files/ENCFF698KWQ/@@download/ENCFF698KWQ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF046PED bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 50 ENCFF643CGH, ENCFF659NRO, ENCFF826UNN 1370045759 ENCODE Processing Pipeline e373e2c5aab07e6cc74b41a13cd5246c https://www.encodeproject.org/files/ENCFF046PED/@@download/ENCFF046PED.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF516ZKN bam alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF643CGH, ENCFF668SGW 2698944814 ENCODE Processing Pipeline 3a1de7f7e06848e371ba9214dc5051c1 https://www.encodeproject.org/files/ENCFF516ZKN/@@download/ENCFF516ZKN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF896AXB bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF643CGH 465533379 ENCODE Processing Pipeline 5db78ec69b91c308242b4c93eb00b2f0 https://www.encodeproject.org/files/ENCFF896AXB/@@download/ENCFF896AXB.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF571VGS bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF643CGH 1192093443 ENCODE Processing Pipeline 3cbdbd6e426a456d620f4e620be57131 https://www.encodeproject.org/files/ENCFF571VGS/@@download/ENCFF571VGS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF358QPW bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF643CGH 560585913 ENCODE Processing Pipeline b2ff5f7db710158369c7c094fc2eff0d https://www.encodeproject.org/files/ENCFF358QPW/@@download/ENCFF358QPW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF291LSV bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF643CGH 757956051 ENCODE Processing Pipeline 590c19ed667f3009ce9e051df1115a06 https://www.encodeproject.org/files/ENCFF291LSV/@@download/ENCFF291LSV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF010TVY bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF871VOL 554647663 ENCODE Processing Pipeline c330cc35e45e1388e97d3793bd105c77 https://www.encodeproject.org/files/ENCFF010TVY/@@download/ENCFF010TVY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF057SMG bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF643CGH 604858692 ENCODE Processing Pipeline d5d60cfdcfea11d5c0ea96d3bcc57f5d https://www.encodeproject.org/files/ENCFF057SMG/@@download/ENCFF057SMG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF421ZNL bam alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF643CGH, ENCFF834BMO 3851548503 ENCODE Processing Pipeline 48760212ab6d1f1b29af6f4ae18e0367 https://www.encodeproject.org/files/ENCFF421ZNL/@@download/ENCFF421ZNL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF308XAR bam alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF643EOI, ENCFF757IXD 4055244717 ENCODE Processing Pipeline 4a04c5d97b45a2ab9d20d56938a7ba68 https://www.encodeproject.org/files/ENCFF308XAR/@@download/ENCFF308XAR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF840IWN bam alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF643CGH, ENCFF962IZX 4569147508 ENCODE Processing Pipeline 378286c71cb3cc0013f81ab5aa70e83f https://www.encodeproject.org/files/ENCFF840IWN/@@download/ENCFF840IWN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF979WLX bam alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF643CGH, ENCFF672XQY 2974068992 ENCODE Processing Pipeline f466e90a2febc6707d1b3cd38ad57622 https://www.encodeproject.org/files/ENCFF979WLX/@@download/ENCFF979WLX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF793TUM bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF805RHK 1527686828 ENCODE Processing Pipeline 29649e878989a5f1345859929c943cc3 https://www.encodeproject.org/files/ENCFF793TUM/@@download/ENCFF793TUM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF626RYW bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF675YZO 1520005155 ENCODE Processing Pipeline a74b69415811475ed3297101129c4b78 https://www.encodeproject.org/files/ENCFF626RYW/@@download/ENCFF626RYW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF407QSA bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF643CGH 1184353880 ENCODE Processing Pipeline 5ab92f23082050da540092dca0932b5b https://www.encodeproject.org/files/ENCFF407QSA/@@download/ENCFF407QSA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF266IKT bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF762ILJ 1256392548 ENCODE Processing Pipeline 5389579078fc5ea90eadc1c5c9a0d146 https://www.encodeproject.org/files/ENCFF266IKT/@@download/ENCFF266IKT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF036IOO bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF643CGH, ENCFF911ICF 3260076884 ENCODE Processing Pipeline 5c4d88055d36f0e822b99b792c29217e https://www.encodeproject.org/files/ENCFF036IOO/@@download/ENCFF036IOO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF358HOW bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF643CGH, ENCFF678PWC 4045351895 ENCODE Processing Pipeline 5fab3ec07a99cb0567ebe5f977bd61c1 https://www.encodeproject.org/files/ENCFF358HOW/@@download/ENCFF358HOW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF540ZTB bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF643CGH 864322626 ENCODE Processing Pipeline 6905976d24991e396c9701347b4c18b9 https://www.encodeproject.org/files/ENCFF540ZTB/@@download/ENCFF540ZTB.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF666EIZ bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF652IDC 1138158002 ENCODE Processing Pipeline e13bd171fbcc1a5c5a27619b1cc1d176 https://www.encodeproject.org/files/ENCFF666EIZ/@@download/ENCFF666EIZ.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF831ANK bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF643CGH, ENCFF785LRF 3039290727 ENCODE Processing Pipeline 6a9ce81f18df2772801560aa3db834aa https://www.encodeproject.org/files/ENCFF831ANK/@@download/ENCFF831ANK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF159BQG bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF643CGH, ENCFF861XUI 2591621597 ENCODE Processing Pipeline bbc3fe3f43c2dfec4bb5be7539221da0 https://www.encodeproject.org/files/ENCFF159BQG/@@download/ENCFF159BQG.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF070MZX bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF987WCU 981111910 ENCODE Processing Pipeline 81305870c43be29e863c269a6b5969e2 https://www.encodeproject.org/files/ENCFF070MZX/@@download/ENCFF070MZX.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF795XBH bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF697GAP, ENCFF713DPD 1811969789 ENCODE Processing Pipeline c0cd99a89d1c076024147d74e1480b85 https://www.encodeproject.org/files/ENCFF795XBH/@@download/ENCFF795XBH.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF022YLX bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF643CGH 3424980701 ENCODE Processing Pipeline f14fc394f8e2598375a54c24438827c0 https://www.encodeproject.org/files/ENCFF022YLX/@@download/ENCFF022YLX.bam GRCh38 released mild to moderate bottlenecking ENCFF768YUH bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF643CGH, ENCFF845GWE 3934138658 ENCODE Processing Pipeline 2051c048236233f4529b630f5d99eed0 https://www.encodeproject.org/files/ENCFF768YUH/@@download/ENCFF768YUH.bam GRCh38 released mild to moderate bottlenecking ENCFF802UVT bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF643CGH, ENCFF951RZS 3026274935 ENCODE Processing Pipeline 1b7129bba64e76b44e5d93cbb5555b63 https://www.encodeproject.org/files/ENCFF802UVT/@@download/ENCFF802UVT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF326GSV bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF643CGH 4494761456 ENCODE Processing Pipeline 11fdd5b13a3038e08bd1e36b76ba562d https://www.encodeproject.org/files/ENCFF326GSV/@@download/ENCFF326GSV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF426USZ bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF946FEX 637349923 ENCODE Processing Pipeline 656f5d408fbdac522f48939e88fc8883 https://www.encodeproject.org/files/ENCFF426USZ/@@download/ENCFF426USZ.bam GRCh38 released borderline replicate concordance, low read depth ENCFF946XIU bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF953UBF 1264305922 ENCODE Processing Pipeline 64f46a40ee66f656f522e26ffe0cb113 https://www.encodeproject.org/files/ENCFF946XIU/@@download/ENCFF946XIU.bam GRCh38 released borderline replicate concordance, low read depth ENCFF540VVE bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF740WEF, ENCFF959EDS 635800967 ENCODE Processing Pipeline bd9dbc61d9f62897d2ba0f9feb5ca215 https://www.encodeproject.org/files/ENCFF540VVE/@@download/ENCFF540VVE.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF503IYW bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF643CGH 898475923 ENCODE Processing Pipeline 8d2b190c999dbd96ab7f3f04c23f0cf6 https://www.encodeproject.org/files/ENCFF503IYW/@@download/ENCFF503IYW.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF415CBQ bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF268EDU, ENCFF643CGH, ENCFF775QYL 1535522623 ENCODE Processing Pipeline 3a91e74ce20619ec915c397d223d20f5 https://www.encodeproject.org/files/ENCFF415CBQ/@@download/ENCFF415CBQ.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF883NNI bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF013LUW, ENCFF643CGH 2438606268 ENCODE Processing Pipeline 76344da7a93dd6155ab327e842f9ba93 https://www.encodeproject.org/files/ENCFF883NNI/@@download/ENCFF883NNI.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF558UMD bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF643CGH, ENCFF932LBZ 4527966622 ENCODE Processing Pipeline d94bfb9c39a9a83e41b3d2dd60fa9dfc https://www.encodeproject.org/files/ENCFF558UMD/@@download/ENCFF558UMD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF629RTF bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF643CGH 4825304698 ENCODE Processing Pipeline ccfd2e7772f0f2e003036b0c85d1ab6c https://www.encodeproject.org/files/ENCFF629RTF/@@download/ENCFF629RTF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF625AJO bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF643CGH, ENCFF848CPR 1121846726 ENCODE Processing Pipeline 04bb55024787370a563c56352c699332 https://www.encodeproject.org/files/ENCFF625AJO/@@download/ENCFF625AJO.bam GRCh38 released missing genetic modification characterization ENCFF212PQL bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF643CGH, ENCFF733OMC 1136641271 ENCODE Processing Pipeline a7efb48f2d739ccebc65ae0d1debf6fd https://www.encodeproject.org/files/ENCFF212PQL/@@download/ENCFF212PQL.bam GRCh38 released missing genetic modification characterization ENCFF986TQA bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF643CGH, ENCFF774HWW 3908515273 ENCODE Processing Pipeline 198ac0695e195c7d8ca0db7c09c46931 https://www.encodeproject.org/files/ENCFF986TQA/@@download/ENCFF986TQA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF306VSK bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF807MLK, ENCFF846CXS 5368827052 ENCODE Processing Pipeline 7e575e41bfecfad6ed4f5a50024ccb96 https://www.encodeproject.org/files/ENCFF306VSK/@@download/ENCFF306VSK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF520WLC bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF643CGH 4077411891 ENCODE Processing Pipeline 593e71aa84e5e6ac437602104400c4b2 https://www.encodeproject.org/files/ENCFF520WLC/@@download/ENCFF520WLC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF472VIX bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF643CGH 4856186340 ENCODE Processing Pipeline ddabdaa7595e8c24b9117d24ce8fbd06 https://www.encodeproject.org/files/ENCFF472VIX/@@download/ENCFF472VIX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF533OJM bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF643CGH, ENCFF747KWI 5525781068 ENCODE Processing Pipeline 1d20303b5a477d3455840db69680f127 https://www.encodeproject.org/files/ENCFF533OJM/@@download/ENCFF533OJM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF794NBJ bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF643CGH, ENCFF753QHT 6472250110 ENCODE Processing Pipeline 1476614b1287e44f37afe39981f18150 https://www.encodeproject.org/files/ENCFF794NBJ/@@download/ENCFF794NBJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF237KDQ bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF643CGH, ENCFF810LAW 589183668 ENCODE Processing Pipeline 8eb35ef5268dcf4fbec2a234b4e3081f https://www.encodeproject.org/files/ENCFF237KDQ/@@download/ENCFF237KDQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF165ZAR bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF643CGH 893017981 ENCODE Processing Pipeline b6b26d50a212785f86f2552f26f5461f https://www.encodeproject.org/files/ENCFF165ZAR/@@download/ENCFF165ZAR.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF488QXW bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF643CGH, ENCFF687NYU 3970792660 ENCODE Processing Pipeline a8e23844ba622c8816cafb0c1ec4a5bd https://www.encodeproject.org/files/ENCFF488QXW/@@download/ENCFF488QXW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF714ZDZ bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF643CGH, ENCFF910ICX 4577202873 ENCODE Processing Pipeline 9ff189281cadf9b031fd6c6f9acbea9f https://www.encodeproject.org/files/ENCFF714ZDZ/@@download/ENCFF714ZDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF982QKE bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF203MXC, ENCFF454FRC, ENCFF643CGH 4270284184 ENCODE Processing Pipeline 91f2523d14916c138d5da7cebcc4aaed https://www.encodeproject.org/files/ENCFF982QKE/@@download/ENCFF982QKE.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF665BYT bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF021DVV, ENCFF643CGH, ENCFF804QYW 4846167445 ENCODE Processing Pipeline a8784721c7300f42a4a1a8f61dc17f0b https://www.encodeproject.org/files/ENCFF665BYT/@@download/ENCFF665BYT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF955RIY bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 50 ENCFF594DJD, ENCFF643CGH 1037504441 ENCODE Processing Pipeline 27efa5bb3f3a19355dd96c523873d81f https://www.encodeproject.org/files/ENCFF955RIY/@@download/ENCFF955RIY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF337KIG bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 50 ENCFF059UOO, ENCFF643CGH 1294723815 ENCODE Processing Pipeline a87ccba8d1b2f0b87d9a3e0455537ed4 https://www.encodeproject.org/files/ENCFF337KIG/@@download/ENCFF337KIG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF200JRU bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF643CGH 741839095 ENCODE Processing Pipeline ac32fac655aa0ee3aaf6dce15d0c57f9 https://www.encodeproject.org/files/ENCFF200JRU/@@download/ENCFF200JRU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF942GFS bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF643CGH 624125176 ENCODE Processing Pipeline 4e61cde3978ccadb76229ecffa90eae1 https://www.encodeproject.org/files/ENCFF942GFS/@@download/ENCFF942GFS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF515YFJ bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF148LLM, ENCFF643CGH 822971267 ENCODE Processing Pipeline 64f6784e055c1386a57c0d0a6b6b9b7a https://www.encodeproject.org/files/ENCFF515YFJ/@@download/ENCFF515YFJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF780DBH bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF444VXB, ENCFF643CGH 1228517931 ENCODE Processing Pipeline 73e313caca794c1a227168bdfba7ce93 https://www.encodeproject.org/files/ENCFF780DBH/@@download/ENCFF780DBH.bam GRCh38 released missing genetic modification characterization characterization(s) pending review ENCFF159AJM bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF643CGH, ENCFF902ARM 3803745390 ENCODE Processing Pipeline e43a657fcda10510df5d9aaddbf043ba https://www.encodeproject.org/files/ENCFF159AJM/@@download/ENCFF159AJM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF396LUF bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF643CGH, ENCFF784CYN 4723580143 ENCODE Processing Pipeline 3fd89b90a294efd154930e7602337d05 https://www.encodeproject.org/files/ENCFF396LUF/@@download/ENCFF396LUF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF097UUE bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF896GER, ENCFF992BVX 4688893384 ENCODE Processing Pipeline bdaf11e985d01142409e5059d97cd626 https://www.encodeproject.org/files/ENCFF097UUE/@@download/ENCFF097UUE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF155GFD bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF643CGH, ENCFF915HPV 6343968688 ENCODE Processing Pipeline f72c63fab784c809093036f9c5476555 https://www.encodeproject.org/files/ENCFF155GFD/@@download/ENCFF155GFD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF690HCF bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF698KPI 991625584 ENCODE Processing Pipeline ccf019d90c7c0ab5c31b64797921d223 https://www.encodeproject.org/files/ENCFF690HCF/@@download/ENCFF690HCF.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF601XNO bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF643CGH 1024706840 ENCODE Processing Pipeline 47a09db54021c9c932b89fab8e73ba50 https://www.encodeproject.org/files/ENCFF601XNO/@@download/ENCFF601XNO.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF651ATB bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF643CGH, ENCFF948EIJ 1758762883 ENCODE Processing Pipeline cce7f36a63f001c2d385b0f4a5e518af https://www.encodeproject.org/files/ENCFF651ATB/@@download/ENCFF651ATB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF143LAN bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF087IYL, ENCFF467WHQ, ENCFF643CGH 4576409681 ENCODE Processing Pipeline 646ca77f52ca610b862130397d38ebcd https://www.encodeproject.org/files/ENCFF143LAN/@@download/ENCFF143LAN.bam GRCh38 released borderline replicate concordance ENCFF379UJI bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF035FBQ, ENCFF643CGH, ENCFF761HWG 4735934516 ENCODE Processing Pipeline d5ed65c7a618ce69edb47544c52d1443 https://www.encodeproject.org/files/ENCFF379UJI/@@download/ENCFF379UJI.bam GRCh38 released borderline replicate concordance ENCFF436YTR bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF643CGH 810431504 ENCODE Processing Pipeline c02ffc7e00d5852a7bdb6c29bb266370 https://www.encodeproject.org/files/ENCFF436YTR/@@download/ENCFF436YTR.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF141DVZ bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF643CGH 867946707 ENCODE Processing Pipeline 821afb98ff8237a5131db631c8b5ff01 https://www.encodeproject.org/files/ENCFF141DVZ/@@download/ENCFF141DVZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF179SYB bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF643CGH, ENCFF864BVL 5023936314 ENCODE Processing Pipeline 050de7fd549e10f47b24484e41aadc46 https://www.encodeproject.org/files/ENCFF179SYB/@@download/ENCFF179SYB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF430RTC bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF643CGH, ENCFF725NQI 5080560296 ENCODE Processing Pipeline 34f23fb1b40abbdc0951ff58226ceb88 https://www.encodeproject.org/files/ENCFF430RTC/@@download/ENCFF430RTC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF474NTR bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF925BQC 1504686242 ENCODE Processing Pipeline 5d928cf801b833f529572456dd255dce https://www.encodeproject.org/files/ENCFF474NTR/@@download/ENCFF474NTR.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF746BQO bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF568WKI, ENCFF643CGH 1264796730 ENCODE Processing Pipeline 2db9e003a801e1b8a5a1433612d61094 https://www.encodeproject.org/files/ENCFF746BQO/@@download/ENCFF746BQO.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF612FTS bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF643CGH 183394902 ENCODE Processing Pipeline d5fd44a12f628acb802e8364d2f463fa https://www.encodeproject.org/files/ENCFF612FTS/@@download/ENCFF612FTS.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF614VZE bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF643CGH 631888121 ENCODE Processing Pipeline bd7f32735cd4b78edf458aee1d5d214d https://www.encodeproject.org/files/ENCFF614VZE/@@download/ENCFF614VZE.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF049VYL bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF178ZJY, ENCFF643CGH 454782666 ENCODE Processing Pipeline eced607a4f91ef6c7d1ba70ad9000605 https://www.encodeproject.org/files/ENCFF049VYL/@@download/ENCFF049VYL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF581TTB bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF614UID, ENCFF643CGH 414495631 ENCODE Processing Pipeline fafb0efedf37f4325be539f7b99b1e1e https://www.encodeproject.org/files/ENCFF581TTB/@@download/ENCFF581TTB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF574EKT bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF643CGH, ENCFF695OJN 2982228404 ENCODE Processing Pipeline 1bd0138d5b8006178c077c698d8d51ca https://www.encodeproject.org/files/ENCFF574EKT/@@download/ENCFF574EKT.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF749BVC bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF643CGH 4431271918 ENCODE Processing Pipeline e52df2aeff5f064996c8e748dd05c8e3 https://www.encodeproject.org/files/ENCFF749BVC/@@download/ENCFF749BVC.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF852ZPS bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF643CGH 1691832631 ENCODE Processing Pipeline 108c131f3065514af1ab1bbbe1ebe4ee https://www.encodeproject.org/files/ENCFF852ZPS/@@download/ENCFF852ZPS.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF783EIO bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF643CGH 1764240034 ENCODE Processing Pipeline 1a67af784748513233439a7594103817 https://www.encodeproject.org/files/ENCFF783EIO/@@download/ENCFF783EIO.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF433KBE bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF643CGH, ENCFF660BZO 3412450308 ENCODE Processing Pipeline 7a3deb459bd8e3b25e6d1c4e7ef9bc49 https://www.encodeproject.org/files/ENCFF433KBE/@@download/ENCFF433KBE.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF718QAG bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF643CGH, ENCFF895TQT 7964768619 ENCODE Processing Pipeline 92e69cac9482680b5c30013a69921011 https://www.encodeproject.org/files/ENCFF718QAG/@@download/ENCFF718QAG.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF228XTL bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF643CGH, ENCFF661FBG 3735130345 ENCODE Processing Pipeline 31f34cec6186836330d5048429d194fb https://www.encodeproject.org/files/ENCFF228XTL/@@download/ENCFF228XTL.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF525BUR bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF643CGH, ENCFF883WMZ 3717021182 ENCODE Processing Pipeline aa86579c38071192077e0913f8fa58c5 https://www.encodeproject.org/files/ENCFF525BUR/@@download/ENCFF525BUR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF763DOU bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF643CGH 4518501259 ENCODE Processing Pipeline f4b70a5b3a501eebc47edc135a75d4b7 https://www.encodeproject.org/files/ENCFF763DOU/@@download/ENCFF763DOU.bam GRCh38 released ENCFF003ETE bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF643CGH 5521331462 ENCODE Processing Pipeline b951263307e374fc3c4fc870674bda90 https://www.encodeproject.org/files/ENCFF003ETE/@@download/ENCFF003ETE.bam GRCh38 released ENCFF982AFE bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF643CGH 865139476 ENCODE Processing Pipeline b92010297ee9df3e31a12bfd1e32d50c https://www.encodeproject.org/files/ENCFF982AFE/@@download/ENCFF982AFE.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF200PYZ bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF643CGH 916814166 ENCODE Processing Pipeline 495eb0445f00c3aa9ff6c92ada8f2ad8 https://www.encodeproject.org/files/ENCFF200PYZ/@@download/ENCFF200PYZ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF645WYX bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF643CGH, ENCFF659PCT 5040284283 ENCODE Processing Pipeline ee222ca55094eddfc8243772a92b6b22 https://www.encodeproject.org/files/ENCFF645WYX/@@download/ENCFF645WYX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF558PHY bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF643CGH, ENCFF981GJX 5167121946 ENCODE Processing Pipeline c211b12310f1d2e1c452d30ab2c5ac68 https://www.encodeproject.org/files/ENCFF558PHY/@@download/ENCFF558PHY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF423MBY bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF643CGH 3700198891 ENCODE Processing Pipeline 059c7472b4cfa96ff045e62777b7c1d6 https://www.encodeproject.org/files/ENCFF423MBY/@@download/ENCFF423MBY.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF307UCL bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF643CGH 5080046310 ENCODE Processing Pipeline 6c4e774a2df0f5c057afc232d8d421e6 https://www.encodeproject.org/files/ENCFF307UCL/@@download/ENCFF307UCL.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF986KSB bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF643CGH 957001469 ENCODE Processing Pipeline 293ce2364699cd94930a89b7c618fbf6 https://www.encodeproject.org/files/ENCFF986KSB/@@download/ENCFF986KSB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF614RBF bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF643CGH 741857199 ENCODE Processing Pipeline e311ed619537544f39062f1a3ea6b5ae https://www.encodeproject.org/files/ENCFF614RBF/@@download/ENCFF614RBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF889PAN bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF643CGH 7024856381 ENCODE Processing Pipeline bafe9e25291e3f2729341676941780af https://www.encodeproject.org/files/ENCFF889PAN/@@download/ENCFF889PAN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF457VMK bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF643CGH 3707502409 ENCODE Processing Pipeline f32bb7d18472267311b26a7f4d6ffb9a https://www.encodeproject.org/files/ENCFF457VMK/@@download/ENCFF457VMK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF819YSI bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF643CGH, ENCFF732UEM, ENCFF943GTQ 6174626958 ENCODE Processing Pipeline 668ae5340696faad826e510901b87766 https://www.encodeproject.org/files/ENCFF819YSI/@@download/ENCFF819YSI.bam GRCh38 released file validation error mismatched file status ENCFF825XYA bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF736GCR, ENCFF908NBF 6205447958 ENCODE Processing Pipeline 38318c3b9d527805736e95c1cf923d95 https://www.encodeproject.org/files/ENCFF825XYA/@@download/ENCFF825XYA.bam GRCh38 released file validation error mismatched file status ENCFF135DRQ bam alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF643CGH 432278085 ENCODE Processing Pipeline 95fc487af08988dfcc150c0eb4853d84 https://www.encodeproject.org/files/ENCFF135DRQ/@@download/ENCFF135DRQ.bam GRCh38 released low read length insufficient read depth control extremely low read depth ENCFF520BIQ bam alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF643CGH 568662639 ENCODE Processing Pipeline 4746d244a86b2816390e8ae469d1e994 https://www.encodeproject.org/files/ENCFF520BIQ/@@download/ENCFF520BIQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF721QYO bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF643CGH, ENCFF911HHR 4737663685 ENCODE Processing Pipeline f3ec6efcb53df8fe119977f933a5f940 https://www.encodeproject.org/files/ENCFF721QYO/@@download/ENCFF721QYO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF522UYX bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF643CGH 6158427302 ENCODE Processing Pipeline 1c97fd0bfe354c4f078795cf037546ed https://www.encodeproject.org/files/ENCFF522UYX/@@download/ENCFF522UYX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF434TKE bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF643CGH, ENCFF752RBW 4466591689 ENCODE Processing Pipeline 5bd145a07a80e0a754cd6fa49c89933c https://www.encodeproject.org/files/ENCFF434TKE/@@download/ENCFF434TKE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF658VID bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF643CGH 5346384127 ENCODE Processing Pipeline 501184402345d67652ac5c75bb4d8415 https://www.encodeproject.org/files/ENCFF658VID/@@download/ENCFF658VID.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF097CBF bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF643CGH, ENCFF999JFC 3687526702 ENCODE Processing Pipeline ce1d2e5f286df24b8034db286f866889 https://www.encodeproject.org/files/ENCFF097CBF/@@download/ENCFF097CBF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF493ODC bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF643CGH 5744763242 ENCODE Processing Pipeline 21fa966d2110f20b35a57bae72cb975f https://www.encodeproject.org/files/ENCFF493ODC/@@download/ENCFF493ODC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF384WCY bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 36 ENCFF002EWG, ENCFF643CGH 782324033 ENCODE Processing Pipeline 4dfa8c3dd51b0e66fba53614770a2b40 https://www.encodeproject.org/files/ENCFF384WCY/@@download/ENCFF384WCY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF417HNM bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 36 ENCFF002EWF, ENCFF643CGH 588147537 ENCODE Processing Pipeline 2771d3024927f57a1e507381718c73ec https://www.encodeproject.org/files/ENCFF417HNM/@@download/ENCFF417HNM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF302VJW bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF643CGH 3567181329 ENCODE Processing Pipeline 94b29496a3a3e163b8c1b968d9aed302 https://www.encodeproject.org/files/ENCFF302VJW/@@download/ENCFF302VJW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF594ICG bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF643CGH 5643593730 ENCODE Processing Pipeline 785c8a0fc07b7f0ed87f835cbbafce2b https://www.encodeproject.org/files/ENCFF594ICG/@@download/ENCFF594ICG.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF412JUX bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF643CGH 1943361094 ENCODE Processing Pipeline de43e7682ec1bff389857f7c3bf8630e https://www.encodeproject.org/files/ENCFF412JUX/@@download/ENCFF412JUX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF861AVI bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF643CGH, ENCFF761GFN 452256189 ENCODE Processing Pipeline e7a89c78b8d7f35489e20557c5b39002 https://www.encodeproject.org/files/ENCFF861AVI/@@download/ENCFF861AVI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF738RYL bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF643CGH 3858906016 ENCODE Processing Pipeline b27538ab48bfec2eb3df7b6fbd416197 https://www.encodeproject.org/files/ENCFF738RYL/@@download/ENCFF738RYL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF250EIC bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF643CGH 4380599924 ENCODE Processing Pipeline 194bfb6cd6a9e4118405d59ebdf67832 https://www.encodeproject.org/files/ENCFF250EIC/@@download/ENCFF250EIC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF404VMP bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF643CGH, ENCFF774IKE 3095828913 ENCODE Processing Pipeline 864dbeb90aa0971e497f9112c3bf0635 https://www.encodeproject.org/files/ENCFF404VMP/@@download/ENCFF404VMP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF221VRH bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF643CGH 3443308139 ENCODE Processing Pipeline 7212bb2c421e642db7dd87e58d419c90 https://www.encodeproject.org/files/ENCFF221VRH/@@download/ENCFF221VRH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF091EBR bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF643CGH, ENCFF733YZZ 5422017125 ENCODE Processing Pipeline b82401a6d133ecbf72dde37b398a4368 https://www.encodeproject.org/files/ENCFF091EBR/@@download/ENCFF091EBR.bam GRCh38 released ENCFF801GXY bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF643CGH 6793405106 ENCODE Processing Pipeline 0ff7d437df4f0fefe8ad066be9621d40 https://www.encodeproject.org/files/ENCFF801GXY/@@download/ENCFF801GXY.bam GRCh38 released ENCFF449CDS bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF643CGH, ENCFF804SFA 4028240150 ENCODE Processing Pipeline e5a8249ea8725a135a1abc9ffbdcdc15 https://www.encodeproject.org/files/ENCFF449CDS/@@download/ENCFF449CDS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF642MUY bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF643CGH, ENCFF764PLC 4236985355 ENCODE Processing Pipeline 2d75931bec60bc3cf9a0591e114244a7 https://www.encodeproject.org/files/ENCFF642MUY/@@download/ENCFF642MUY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF057AUM bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF643CGH 3986471704 ENCODE Processing Pipeline efd0107a5de97ea7a646064f951d232c https://www.encodeproject.org/files/ENCFF057AUM/@@download/ENCFF057AUM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF850BEV bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF643CGH 4564780931 ENCODE Processing Pipeline 684a709d0bb86c85b7dfeecd95ca9208 https://www.encodeproject.org/files/ENCFF850BEV/@@download/ENCFF850BEV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF024FHS bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF643CGH, ENCFF649RQR 3825801694 ENCODE Processing Pipeline 04f46e9d016c50edd9c90f39ede42a8c https://www.encodeproject.org/files/ENCFF024FHS/@@download/ENCFF024FHS.bam GRCh38 released antibody characterized with exemption ENCFF447SWP bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF643CGH, ENCFF888IQK 6049503824 ENCODE Processing Pipeline 7b1e764d00dc5330c06addb428954e93 https://www.encodeproject.org/files/ENCFF447SWP/@@download/ENCFF447SWP.bam GRCh38 released antibody characterized with exemption ENCFF695GTB bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF643CGH, ENCFF780YRV 5878034614 ENCODE Processing Pipeline b919bdc5db834052e7a3f257e6b12779 https://www.encodeproject.org/files/ENCFF695GTB/@@download/ENCFF695GTB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF115BME bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF643CGH, ENCFF916QKA 5773969876 ENCODE Processing Pipeline 6fbd876dab9614c9c58e309fe55ef2fa https://www.encodeproject.org/files/ENCFF115BME/@@download/ENCFF115BME.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF677JTW bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF643CGH, ENCFF919QDE 3007269920 ENCODE Processing Pipeline 7bda913a78f00c6be4658dee12a82dd2 https://www.encodeproject.org/files/ENCFF677JTW/@@download/ENCFF677JTW.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF921IAQ bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF643CGH, ENCFF871YPD 3941423913 ENCODE Processing Pipeline fd4937419f5a0d3a75771c14ead719a8 https://www.encodeproject.org/files/ENCFF921IAQ/@@download/ENCFF921IAQ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF997BDJ bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF643CGH 4133545622 ENCODE Processing Pipeline 1e0a9d7ddd4d21f2b038716fd03a5201 https://www.encodeproject.org/files/ENCFF997BDJ/@@download/ENCFF997BDJ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF285FGV bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF643CGH 4435611242 ENCODE Processing Pipeline 63b21110a9e393181370e53662dd9f1b https://www.encodeproject.org/files/ENCFF285FGV/@@download/ENCFF285FGV.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF796CGI bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF643CGH 6472876511 ENCODE Processing Pipeline c3784f1d5be0cfc895efa7cba3919ba0 https://www.encodeproject.org/files/ENCFF796CGI/@@download/ENCFF796CGI.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF031GGC bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF643CGH 7566410339 ENCODE Processing Pipeline be85a06ddf2207aa072769ddb0558b57 https://www.encodeproject.org/files/ENCFF031GGC/@@download/ENCFF031GGC.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF662QGV bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF643CGH 4602365751 ENCODE Processing Pipeline af7c3f69e15a618695c0fbdf3afdb78a https://www.encodeproject.org/files/ENCFF662QGV/@@download/ENCFF662QGV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF107BYB bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF643CGH 4650456233 ENCODE Processing Pipeline 2e6959c1f848b739ccf9f55dba7ddf2c https://www.encodeproject.org/files/ENCFF107BYB/@@download/ENCFF107BYB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF373CMX bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF643CGH, ENCFF755SKN, ENCFF895EJG 5275561469 ENCODE Processing Pipeline f8ad521022a4e241b4cb5eb3bf2a503f https://www.encodeproject.org/files/ENCFF373CMX/@@download/ENCFF373CMX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF504BRR bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF643CGH 5765749308 ENCODE Processing Pipeline 539b10f2f171b6cb51e92b0ca62d434d https://www.encodeproject.org/files/ENCFF504BRR/@@download/ENCFF504BRR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF322GHA bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF643CGH 619948519 ENCODE Processing Pipeline 874180c7bcb64903d8e120990ab3c05c https://www.encodeproject.org/files/ENCFF322GHA/@@download/ENCFF322GHA.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF880EMH bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF643CGH 731343427 ENCODE Processing Pipeline 449b4037f69e99e199c3c4ac4b5d52a7 https://www.encodeproject.org/files/ENCFF880EMH/@@download/ENCFF880EMH.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF822ADN bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF643CGH 3438580804 ENCODE Processing Pipeline 9c99666a88586a7aa36d6097af0b4352 https://www.encodeproject.org/files/ENCFF822ADN/@@download/ENCFF822ADN.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF790KLE bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF685UUM, ENCFF828VUL 5001589684 ENCODE Processing Pipeline 131ad19bd86dc73b0c596884152f7ef9 https://www.encodeproject.org/files/ENCFF790KLE/@@download/ENCFF790KLE.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF208UQN bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF935HPE 800092323 ENCODE Processing Pipeline a3c1de3136127b73fa71694af7d9dd61 https://www.encodeproject.org/files/ENCFF208UQN/@@download/ENCFF208UQN.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF493GFN bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF643CGH, ENCFF657CSM 1036948810 ENCODE Processing Pipeline ae9400d86c3bf0dd79c44339ee207e73 https://www.encodeproject.org/files/ENCFF493GFN/@@download/ENCFF493GFN.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF142BBF bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF643CGH 3769926180 ENCODE Processing Pipeline 23758028e8974878f567596cb9ea486b https://www.encodeproject.org/files/ENCFF142BBF/@@download/ENCFF142BBF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF821UAT bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF643CGH 3138884182 ENCODE Processing Pipeline 72c1286bfd0ae7a591541934ac0c80e7 https://www.encodeproject.org/files/ENCFF821UAT/@@download/ENCFF821UAT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF580EVG bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF643CGH, ENCFF970GQF 4481096810 ENCODE Processing Pipeline 0f45c7b4113d154beef68824625c5371 https://www.encodeproject.org/files/ENCFF580EVG/@@download/ENCFF580EVG.bam GRCh38 released mild to moderate bottlenecking ENCFF625RFM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF643CGH, ENCFF914KKF 4919181865 ENCODE Processing Pipeline cbf49415d7cb174648daea12fef08588 https://www.encodeproject.org/files/ENCFF625RFM/@@download/ENCFF625RFM.bam GRCh38 released mild to moderate bottlenecking ENCFF268CBK bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF643CGH 7580253131 ENCODE Processing Pipeline b2bcb8476f0f3cde9a8fcf125b87b42f https://www.encodeproject.org/files/ENCFF268CBK/@@download/ENCFF268CBK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF253JTJ bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF643CGH 6146180127 ENCODE Processing Pipeline b5ec3479af5363e5e306c421e772c98c https://www.encodeproject.org/files/ENCFF253JTJ/@@download/ENCFF253JTJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF822CZJ bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF643CGH 4923146061 ENCODE Processing Pipeline 0b6a53c614ab69bc4991a29f63746a7c https://www.encodeproject.org/files/ENCFF822CZJ/@@download/ENCFF822CZJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF022KEN bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF643CGH 6019072565 ENCODE Processing Pipeline 49e056397ff9d4fb0c258e0693b44e56 https://www.encodeproject.org/files/ENCFF022KEN/@@download/ENCFF022KEN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF667TEE bam alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF643CGH 3761350446 ENCODE Processing Pipeline 3231f657d4651804e9467fcf5ffd9b03 https://www.encodeproject.org/files/ENCFF667TEE/@@download/ENCFF667TEE.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172UCO bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF643CGH 5127202841 ENCODE Processing Pipeline 7051f69358a927fad21027998e7aa319 https://www.encodeproject.org/files/ENCFF172UCO/@@download/ENCFF172UCO.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF107HRF bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF643CGH 5532411663 ENCODE Processing Pipeline ce21ccc53fa352e89224b2eadabd57c6 https://www.encodeproject.org/files/ENCFF107HRF/@@download/ENCFF107HRF.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF918HBF bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF643CGH 5733423415 ENCODE Processing Pipeline f49e055d73b08d9100b17648c4e1126e https://www.encodeproject.org/files/ENCFF918HBF/@@download/ENCFF918HBF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF172UYR bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF643CGH, ENCFF899AEL 5355405725 ENCODE Processing Pipeline 6c6eb0cde8baf1596d0d365eec943689 https://www.encodeproject.org/files/ENCFF172UYR/@@download/ENCFF172UYR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF113CDP bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF643CGH, ENCFF758UPX 3618492770 ENCODE Processing Pipeline b64eb7f5a2e3f9c348170129030b333f https://www.encodeproject.org/files/ENCFF113CDP/@@download/ENCFF113CDP.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF628HJJ bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF836EUU, ENCFF942YMQ 4421121236 ENCODE Processing Pipeline 37db51cc2e3bf6518903e9e59258694b https://www.encodeproject.org/files/ENCFF628HJJ/@@download/ENCFF628HJJ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF384OOV bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF859HOC, ENCFF869MHB 5224585619 ENCODE Processing Pipeline b210a1f3d798e4fbff71eb201dbb8ba1 https://www.encodeproject.org/files/ENCFF384OOV/@@download/ENCFF384OOV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF937TCA bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF643CGH, ENCFF711PUH 5228159085 ENCODE Processing Pipeline b23f1263f70e06e68df2f1dfe509399f https://www.encodeproject.org/files/ENCFF937TCA/@@download/ENCFF937TCA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF892ULP bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF853FHN, ENCFF919KAD 4884267911 ENCODE Processing Pipeline d25d53b9d1904472f234c215a946aa7f https://www.encodeproject.org/files/ENCFF892ULP/@@download/ENCFF892ULP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF369ANP bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF853ZLC, ENCFF952WBI 5230914575 ENCODE Processing Pipeline 373d0be3d68eebe106ca61f53a5ba7cb https://www.encodeproject.org/files/ENCFF369ANP/@@download/ENCFF369ANP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF787VIZ bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF767XIJ 1025266255 ENCODE Processing Pipeline 00c7fa92090643862d2ac878feb4c62c https://www.encodeproject.org/files/ENCFF787VIZ/@@download/ENCFF787VIZ.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF891QAW bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF643CGH 1173554228 ENCODE Processing Pipeline 452f41223b2d707ef8807f2b466f5120 https://www.encodeproject.org/files/ENCFF891QAW/@@download/ENCFF891QAW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF833WHB bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF643CGH, ENCFF960KMN 5217276696 ENCODE Processing Pipeline 97fc6aee205b39573917384111468052 https://www.encodeproject.org/files/ENCFF833WHB/@@download/ENCFF833WHB.bam GRCh38 released antibody characterized with exemption ENCFF960PYI bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF643CGH 5914076970 ENCODE Processing Pipeline a0944252b3d3ada68bf574114cdb5098 https://www.encodeproject.org/files/ENCFF960PYI/@@download/ENCFF960PYI.bam GRCh38 released antibody characterized with exemption ENCFF478ATT bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF643CGH, ENCFF979NLP 3143037693 ENCODE Processing Pipeline 4fb2a5560b7453de85c3cac005d095c2 https://www.encodeproject.org/files/ENCFF478ATT/@@download/ENCFF478ATT.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF452KIM bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF643CGH, ENCFF655YHB 6022097003 ENCODE Processing Pipeline 23e78e1a8855b307e1158642e7572fdd https://www.encodeproject.org/files/ENCFF452KIM/@@download/ENCFF452KIM.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF538HJQ bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF643CGH 3474553404 ENCODE Processing Pipeline 8c46040f411f191180b1464fec3c0018 https://www.encodeproject.org/files/ENCFF538HJQ/@@download/ENCFF538HJQ.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF695FUY bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF643CGH, ENCFF677MGT 7011415187 ENCODE Processing Pipeline 6260f4715641c9909d1b79e673652fdb https://www.encodeproject.org/files/ENCFF695FUY/@@download/ENCFF695FUY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF913XHL bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF643CGH, ENCFF688KSF 5482217307 ENCODE Processing Pipeline 0e9f44ec384a4b22af5edc459a617365 https://www.encodeproject.org/files/ENCFF913XHL/@@download/ENCFF913XHL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF519SQU bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF643CGH, ENCFF957TBU 4973242410 ENCODE Processing Pipeline aa8dd50e5fdc41d53d4e0c43d512bbf9 https://www.encodeproject.org/files/ENCFF519SQU/@@download/ENCFF519SQU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF846CYU bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF749JUG, ENCFF942QFN 2261609064 ENCODE Processing Pipeline 369dc09f70b6be6203675d0abd60b4e8 https://www.encodeproject.org/files/ENCFF846CYU/@@download/ENCFF846CYU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF226KOW bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF643CGH, ENCFF907JIE 3776769820 ENCODE Processing Pipeline f38981bb5b175d676134bdd5b25e90dc https://www.encodeproject.org/files/ENCFF226KOW/@@download/ENCFF226KOW.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF532LHG bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF643CGH, ENCFF808AJP 3196186015 ENCODE Processing Pipeline 210027063cb2b778a08412cbc7c621c9 https://www.encodeproject.org/files/ENCFF532LHG/@@download/ENCFF532LHG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF446DII bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF643CGH 3696714697 ENCODE Processing Pipeline 653d10b030b13887c52b6da78d5afe21 https://www.encodeproject.org/files/ENCFF446DII/@@download/ENCFF446DII.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF490QZJ bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF643CGH, ENCFF652VHE, ENCFF924UXY 340471484 ENCODE Processing Pipeline dededee6adcdb467ab0c2eb0dacda1f6 https://www.encodeproject.org/files/ENCFF490QZJ/@@download/ENCFF490QZJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF774URE bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF408WZC, ENCFF570VVZ, ENCFF643CGH 690921036 ENCODE Processing Pipeline 6e2f63170f5b24c2258404dbef64a737 https://www.encodeproject.org/files/ENCFF774URE/@@download/ENCFF774URE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF800UBL bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF643CGH, ENCFF769JRE 5001360714 ENCODE Processing Pipeline db71ddf7e681afbd7dd27d7bb90d1f82 https://www.encodeproject.org/files/ENCFF800UBL/@@download/ENCFF800UBL.bam GRCh38 released ENCFF095VQR bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF643CGH, ENCFF866MDO 5001312247 ENCODE Processing Pipeline a2700ae0b5cb9af509f64f7cd3df6619 https://www.encodeproject.org/files/ENCFF095VQR/@@download/ENCFF095VQR.bam GRCh38 released ENCFF275TIK bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF643CGH, ENCFF987TDP 520166932 ENCODE Processing Pipeline 3239461a2d18031506a90becb0b7a2ee https://www.encodeproject.org/files/ENCFF275TIK/@@download/ENCFF275TIK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF574ZKW bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF643CGH, ENCFF988VYU 590339369 ENCODE Processing Pipeline cf053b289a77330bfa64c51d41042a62 https://www.encodeproject.org/files/ENCFF574ZKW/@@download/ENCFF574ZKW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF548YYR bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF643CGH, ENCFF778PUP 3283055132 ENCODE Processing Pipeline 9d5e7efc78fbbb0645c7603b2b48f7a7 https://www.encodeproject.org/files/ENCFF548YYR/@@download/ENCFF548YYR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF566EXS bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF643CGH, ENCFF960PEL 4316611671 ENCODE Processing Pipeline e9a7ae03e24cab5aa080d0b6be6ee9a4 https://www.encodeproject.org/files/ENCFF566EXS/@@download/ENCFF566EXS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF871KNP bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF677RCM, ENCFF954WVJ 3377392964 ENCODE Processing Pipeline 6cad181803020a000048d63c8b07b988 https://www.encodeproject.org/files/ENCFF871KNP/@@download/ENCFF871KNP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF490ICL bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF643CGH, ENCFF899IKW 3726758860 ENCODE Processing Pipeline 847be0d9056301bb4fd01eab5589ef2a https://www.encodeproject.org/files/ENCFF490ICL/@@download/ENCFF490ICL.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF491NLK bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF643CGH 3527847603 ENCODE Processing Pipeline f9d77813349b79b9f53043f6b0219beb https://www.encodeproject.org/files/ENCFF491NLK/@@download/ENCFF491NLK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF206SEB bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF643CGH, ENCFF943EAL 3510985317 ENCODE Processing Pipeline bd2ecd7731e9622c4820d37d296a711b https://www.encodeproject.org/files/ENCFF206SEB/@@download/ENCFF206SEB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF471KSC bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF862ZWK 1171157212 ENCODE Processing Pipeline 02ac50a6db4f09377d083ea4525cb878 https://www.encodeproject.org/files/ENCFF471KSC/@@download/ENCFF471KSC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399MTG bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF643CGH 1118877915 ENCODE Processing Pipeline b3db353645aa01a1742702e618d0f739 https://www.encodeproject.org/files/ENCFF399MTG/@@download/ENCFF399MTG.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF751WCI bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF643CGH 3156075469 ENCODE Processing Pipeline 805c82d8df2e031338bebaf73ead8706 https://www.encodeproject.org/files/ENCFF751WCI/@@download/ENCFF751WCI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF786JYO bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF643CGH 8422111950 ENCODE Processing Pipeline 9d8ed97e751d02eadb2da9113fe64a24 https://www.encodeproject.org/files/ENCFF786JYO/@@download/ENCFF786JYO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF345ZQZ bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF643CGH, ENCFF728AOV 5413971731 ENCODE Processing Pipeline 0c806c89941a2beb1384fecda4cb3871 https://www.encodeproject.org/files/ENCFF345ZQZ/@@download/ENCFF345ZQZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF273KRY bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF643CGH 5741886539 ENCODE Processing Pipeline 8fc0f53b50c3b18175286339278dccd7 https://www.encodeproject.org/files/ENCFF273KRY/@@download/ENCFF273KRY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF187CYO bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF643CGH, ENCFF891ZQL 3961579676 ENCODE Processing Pipeline 463df80207f95786e99ced52adf944a3 https://www.encodeproject.org/files/ENCFF187CYO/@@download/ENCFF187CYO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF163EWS bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF643CGH 4912000811 ENCODE Processing Pipeline fef45c45a613eb958c71b6c4ea47481d https://www.encodeproject.org/files/ENCFF163EWS/@@download/ENCFF163EWS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF888AIA bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF643CGH, ENCFF973RUL 1982534522 ENCODE Processing Pipeline 64c401591fb1e7359d828ee854358cc7 https://www.encodeproject.org/files/ENCFF888AIA/@@download/ENCFF888AIA.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF178EBR bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF643CGH, ENCFF649MUT 6761714096 ENCODE Processing Pipeline dd4f27a425c9c572443ee8b0935657ca https://www.encodeproject.org/files/ENCFF178EBR/@@download/ENCFF178EBR.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF599CQU bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF643CGH, ENCFF907SBN 2659275111 ENCODE Processing Pipeline 045df7d2b03ec7c602f283a8eab11391 https://www.encodeproject.org/files/ENCFF599CQU/@@download/ENCFF599CQU.bam GRCh38 released mild to moderate bottlenecking ENCFF688OKC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF643CGH 3132644010 ENCODE Processing Pipeline b7423388b2388d30c2bd8f680546b806 https://www.encodeproject.org/files/ENCFF688OKC/@@download/ENCFF688OKC.bam GRCh38 released mild to moderate bottlenecking ENCFF996ASC bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF643CGH, ENCFF825HMN 4929089090 ENCODE Processing Pipeline f1fc2866405a787c610bf4e185a5f7c8 https://www.encodeproject.org/files/ENCFF996ASC/@@download/ENCFF996ASC.bam GRCh38 released ENCFF939AYG bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF643CGH 5697305746 ENCODE Processing Pipeline cd4f53196133826c1b3bbd9d9d4ed931 https://www.encodeproject.org/files/ENCFF939AYG/@@download/ENCFF939AYG.bam GRCh38 released ENCFF144YCB bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF643CGH 1460773164 ENCODE Processing Pipeline 1cc39d8fc2e9d1b77f7ff5818759485d https://www.encodeproject.org/files/ENCFF144YCB/@@download/ENCFF144YCB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF072MHQ bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF643CGH 1839479707 ENCODE Processing Pipeline f81fd7e712db9195bec93423c328dc74 https://www.encodeproject.org/files/ENCFF072MHQ/@@download/ENCFF072MHQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF056SXW bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF144SDE, ENCFF643CGH 400578458 ENCODE Processing Pipeline db4e53110540e043544748857db0c9f3 https://www.encodeproject.org/files/ENCFF056SXW/@@download/ENCFF056SXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF687MHD bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF643CGH, ENCFF712IBC 414917451 ENCODE Processing Pipeline 79a301255f184ac029b11b3e143fe175 https://www.encodeproject.org/files/ENCFF687MHD/@@download/ENCFF687MHD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF494QGK bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF643CGH 4211711908 ENCODE Processing Pipeline 741a07a60462f0852e78ef1e4ab57f68 https://www.encodeproject.org/files/ENCFF494QGK/@@download/ENCFF494QGK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF735CSF bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF643CGH 4605570442 ENCODE Processing Pipeline 27155ec9cf385540915998b934513617 https://www.encodeproject.org/files/ENCFF735CSF/@@download/ENCFF735CSF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF067KIS bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF643CGH, ENCFF645LBS 5485801631 ENCODE Processing Pipeline 1d3814e776fdaee8b1cdaa9ed8de3203 https://www.encodeproject.org/files/ENCFF067KIS/@@download/ENCFF067KIS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF615BCC bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF643CGH, ENCFF840CUL 5849533182 ENCODE Processing Pipeline c2f735fac7b00b6fe3edd206486c1c34 https://www.encodeproject.org/files/ENCFF615BCC/@@download/ENCFF615BCC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF742OPD bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF643CGH 1531452558 ENCODE Processing Pipeline a18d72e2b1dfa5e4a6ebe93e11bf410c https://www.encodeproject.org/files/ENCFF742OPD/@@download/ENCFF742OPD.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF413DPP bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF732NSK, ENCFF808UIH 4245136320 ENCODE Processing Pipeline df56278af8037750f31ff12381e38a76 https://www.encodeproject.org/files/ENCFF413DPP/@@download/ENCFF413DPP.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF028TNY bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF643CGH, ENCFF825EGN 4492061205 ENCODE Processing Pipeline 9b69a61e235305aa48b3fc03e4b47715 https://www.encodeproject.org/files/ENCFF028TNY/@@download/ENCFF028TNY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF444PPF bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF643CGH, ENCFF814SDG, ENCFF862VDD 4855928085 ENCODE Processing Pipeline 919d369099b2f65cccd03688e7a51e7a https://www.encodeproject.org/files/ENCFF444PPF/@@download/ENCFF444PPF.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF201MXQ bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 100 ENCFF300KRT, ENCFF643CGH, ENCFF847ZNJ 3817513034 ENCODE Processing Pipeline 5f63e668f1b0d55856336b4b5a1d2460 https://www.encodeproject.org/files/ENCFF201MXQ/@@download/ENCFF201MXQ.bam GRCh38 released file validation error mismatched file status ENCFF049RJI bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 100 ENCFF146CPM, ENCFF643CGH, ENCFF899BAM 3694262336 ENCODE Processing Pipeline 2490bae5c0593f80cbaf034af720b459 https://www.encodeproject.org/files/ENCFF049RJI/@@download/ENCFF049RJI.bam GRCh38 released file validation error mismatched file status ENCFF209RNM bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF643CGH 888988940 ENCODE Processing Pipeline 8f49d3a3f7c3ba6478df41f47cbed61e https://www.encodeproject.org/files/ENCFF209RNM/@@download/ENCFF209RNM.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF233III bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF643CGH 1011712675 ENCODE Processing Pipeline ea77e2e536c2216be9795892c1496464 https://www.encodeproject.org/files/ENCFF233III/@@download/ENCFF233III.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF677KNU bam alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF643CGH 3729337259 ENCODE Processing Pipeline 59b711cf33f70e31fb350948eb6f049b https://www.encodeproject.org/files/ENCFF677KNU/@@download/ENCFF677KNU.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF810IRF bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF643CGH, ENCFF706WJQ 2664647704 ENCODE Processing Pipeline 1f6d6b96bde4af04d6690f155d4bd255 https://www.encodeproject.org/files/ENCFF810IRF/@@download/ENCFF810IRF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF760JNE bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF643CGH, ENCFF674JSK 2759991045 ENCODE Processing Pipeline d2ffc44837b3caeb47f93a3e4707d0ab https://www.encodeproject.org/files/ENCFF760JNE/@@download/ENCFF760JNE.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF892HUN bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF643CGH, ENCFF658VPO 5837314108 ENCODE Processing Pipeline 227a114df97c1662fb270847824f3ae1 https://www.encodeproject.org/files/ENCFF892HUN/@@download/ENCFF892HUN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF193RNU bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF643CGH, ENCFF849AAG 5654014240 ENCODE Processing Pipeline c7bf4b21bbc4e6996eada3338176b905 https://www.encodeproject.org/files/ENCFF193RNU/@@download/ENCFF193RNU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF183KFV bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF767STU, ENCFF783NMT 4966926315 ENCODE Processing Pipeline e7699554d0d8eab205e9bd6cbe1c9889 https://www.encodeproject.org/files/ENCFF183KFV/@@download/ENCFF183KFV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF197XQY bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF643CGH 6242754659 ENCODE Processing Pipeline 5c2a7d160ea209417e02ec821063159d https://www.encodeproject.org/files/ENCFF197XQY/@@download/ENCFF197XQY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF360GUG bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF643CGH 4751154044 ENCODE Processing Pipeline 5bcd09adf47666cc341dc0a5ed8c8771 https://www.encodeproject.org/files/ENCFF360GUG/@@download/ENCFF360GUG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF247CVJ bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF643CGH 4451768357 ENCODE Processing Pipeline 52a7713efa867de62368cc4e6f350055 https://www.encodeproject.org/files/ENCFF247CVJ/@@download/ENCFF247CVJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF036LQK bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF643CGH 5414743225 ENCODE Processing Pipeline e7d80b829a4f980d55b42a85cf641968 https://www.encodeproject.org/files/ENCFF036LQK/@@download/ENCFF036LQK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF252BCB bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF643CGH 5205021423 ENCODE Processing Pipeline 2a49dd67bc443664cb881c843da7d1de https://www.encodeproject.org/files/ENCFF252BCB/@@download/ENCFF252BCB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF168WKB bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF643CGH 528383772 ENCODE Processing Pipeline e25dc9cb1446113c4d9e526fcd2721d3 https://www.encodeproject.org/files/ENCFF168WKB/@@download/ENCFF168WKB.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF956NBQ bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF643CGH, ENCFF654HVL, ENCFF710RJL 508378700 ENCODE Processing Pipeline 4698dbaec1c077c949671d1ee6f0dc7d https://www.encodeproject.org/files/ENCFF956NBQ/@@download/ENCFF956NBQ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF013XEG bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF990WRZ 1014042102 ENCODE Processing Pipeline 9906800013ac1d3780a5bee8e52ec37b https://www.encodeproject.org/files/ENCFF013XEG/@@download/ENCFF013XEG.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF040PMB bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF643CGH 944496870 ENCODE Processing Pipeline c1b9728c8d41f12249afd408bccc6148 https://www.encodeproject.org/files/ENCFF040PMB/@@download/ENCFF040PMB.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF366SWW bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF643CGH 433410939 ENCODE Processing Pipeline 1d48d6f06904ee37cd550974730d570c https://www.encodeproject.org/files/ENCFF366SWW/@@download/ENCFF366SWW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF418IAI bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF905CNP 420497232 ENCODE Processing Pipeline fee829188bb41f1eb083953f9ca4fb27 https://www.encodeproject.org/files/ENCFF418IAI/@@download/ENCFF418IAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF276PEK bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF643CGH 4356995125 ENCODE Processing Pipeline c17a6f8231d3bde2badea043ef7bd12b https://www.encodeproject.org/files/ENCFF276PEK/@@download/ENCFF276PEK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF861CWB bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF872RVH, ENCFF906LEJ 3782532463 ENCODE Processing Pipeline 747b303f53d6264902197956478098ca https://www.encodeproject.org/files/ENCFF861CWB/@@download/ENCFF861CWB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF504ARY bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF643CGH, ENCFF796LKB 3971630337 ENCODE Processing Pipeline 9a63bc817f9c8f9121674fdaf5c5f456 https://www.encodeproject.org/files/ENCFF504ARY/@@download/ENCFF504ARY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF080PMW bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF643CGH 5357071434 ENCODE Processing Pipeline 8c49a5fd9aabe924a6def2825f85df1f https://www.encodeproject.org/files/ENCFF080PMW/@@download/ENCFF080PMW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF026WUS bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF643CGH, ENCFF649OML 3536368887 ENCODE Processing Pipeline f797ca2d67b50d51022caf9f1aa0d1b7 https://www.encodeproject.org/files/ENCFF026WUS/@@download/ENCFF026WUS.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF007CPG bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF643CGH 6313721636 ENCODE Processing Pipeline ee6a20e5ca309ceddba1cd58127b03d1 https://www.encodeproject.org/files/ENCFF007CPG/@@download/ENCFF007CPG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF752IEK bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF643CGH 3788992563 ENCODE Processing Pipeline 948e665e639430c7262d2291f2a3c899 https://www.encodeproject.org/files/ENCFF752IEK/@@download/ENCFF752IEK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF860ZZO bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF643CGH 5904390026 ENCODE Processing Pipeline 14fd433509d3d1c5b6e11971c0787fa5 https://www.encodeproject.org/files/ENCFF860ZZO/@@download/ENCFF860ZZO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF525CPA bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF768SQO, ENCFF998YDA 3765084051 ENCODE Processing Pipeline 78ef28c0fb9c77ca9b765122a94a632f https://www.encodeproject.org/files/ENCFF525CPA/@@download/ENCFF525CPA.bam GRCh38 released mild to moderate bottlenecking ENCFF695TZQ bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF643CGH, ENCFF793WFY 3629065324 ENCODE Processing Pipeline 50aaf44ca4c9e6cb87f3d748809d1c1b https://www.encodeproject.org/files/ENCFF695TZQ/@@download/ENCFF695TZQ.bam GRCh38 released mild to moderate bottlenecking ENCFF063NKS bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF643CGH 848425799 ENCODE Processing Pipeline 879f91cba2237ed6b282250230d01cce https://www.encodeproject.org/files/ENCFF063NKS/@@download/ENCFF063NKS.bam GRCh38 released low read length ENCFF114WOS bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF643CGH 795307127 ENCODE Processing Pipeline 9dd36b3a063a103d7e9a41b05546b507 https://www.encodeproject.org/files/ENCFF114WOS/@@download/ENCFF114WOS.bam GRCh38 released low read length ENCFF373YTD bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF643CGH 4436394341 ENCODE Processing Pipeline 2323fa2dace3f4875870b7d36d543c46 https://www.encodeproject.org/files/ENCFF373YTD/@@download/ENCFF373YTD.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF304KSV bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF643CGH, ENCFF976NWF 3991286277 ENCODE Processing Pipeline 89a063eea50bdf0037572290b0e1a611 https://www.encodeproject.org/files/ENCFF304KSV/@@download/ENCFF304KSV.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF724BYL bam alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF643CGH 1071765121 ENCODE Processing Pipeline 5e3d85d64e13ef7580b9b6248650fd32 https://www.encodeproject.org/files/ENCFF724BYL/@@download/ENCFF724BYL.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF842HOT bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF064YHZ, ENCFF643CGH, ENCFF794GSX 4223423636 ENCODE Processing Pipeline 1f805176df9a23d62494ed01356cb57f https://www.encodeproject.org/files/ENCFF842HOT/@@download/ENCFF842HOT.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF807KMB bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF170QQM, ENCFF376TGF, ENCFF643CGH 4360511458 ENCODE Processing Pipeline 489b140a9f779c00e68f7ac11f6cdf89 https://www.encodeproject.org/files/ENCFF807KMB/@@download/ENCFF807KMB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF839WER bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF643CGH, ENCFF842MOT, ENCFF953USV 1329978254 ENCODE Processing Pipeline c40c8e722d05c986ecf6ced97f582073 https://www.encodeproject.org/files/ENCFF839WER/@@download/ENCFF839WER.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF522LXS bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF643CGH 1195441396 ENCODE Processing Pipeline 6e16a87e29b4528c0f08f0be05a14b6a https://www.encodeproject.org/files/ENCFF522LXS/@@download/ENCFF522LXS.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF550IUC bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF691DSF, ENCFF810SJL 3065987892 ENCODE Processing Pipeline 4a2fdf561a9bc85ef728f2dc420b0e9d https://www.encodeproject.org/files/ENCFF550IUC/@@download/ENCFF550IUC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF284XYU bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF643CGH 3070668564 ENCODE Processing Pipeline 6a585d29acf92f480d014e239ff1cc26 https://www.encodeproject.org/files/ENCFF284XYU/@@download/ENCFF284XYU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF542XCL bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF643CGH 3564823673 ENCODE Processing Pipeline cece36e3fecae4aa34e02bb8893ebaf4 https://www.encodeproject.org/files/ENCFF542XCL/@@download/ENCFF542XCL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF549AQZ bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF643CGH 6689524769 ENCODE Processing Pipeline 1edce715a895ae4bf47aa5163c9a57b0 https://www.encodeproject.org/files/ENCFF549AQZ/@@download/ENCFF549AQZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF365QIY bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF643CGH 1922284643 ENCODE Processing Pipeline 70aebb950f3de02716968b556da13ab2 https://www.encodeproject.org/files/ENCFF365QIY/@@download/ENCFF365QIY.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF351ZOQ bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF643CGH, ENCFF907SOV 4570461589 ENCODE Processing Pipeline 1b9ccb79a9aca871254e1f1709cff238 https://www.encodeproject.org/files/ENCFF351ZOQ/@@download/ENCFF351ZOQ.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF221FIU bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF643CGH, ENCFF877OHU 5665345904 ENCODE Processing Pipeline 2b8036c461217d1b8764303d2a3be326 https://www.encodeproject.org/files/ENCFF221FIU/@@download/ENCFF221FIU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF988IKU bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF643CGH 5937394744 ENCODE Processing Pipeline 77642ac3e3eff7a69105d84fc0ca704a https://www.encodeproject.org/files/ENCFF988IKU/@@download/ENCFF988IKU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF958WMW bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF643CGH 2298577133 ENCODE Processing Pipeline 9135d003f675408f1f632ee1ed976d5a https://www.encodeproject.org/files/ENCFF958WMW/@@download/ENCFF958WMW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF339RWU bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF643CGH 3090046520 ENCODE Processing Pipeline 763be60c3e3afa5a031952d4c9e2f101 https://www.encodeproject.org/files/ENCFF339RWU/@@download/ENCFF339RWU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF367OYT bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF643CGH 343335450 ENCODE Processing Pipeline a2be2c44cecae3d2a9ced2a43ad1f0fa https://www.encodeproject.org/files/ENCFF367OYT/@@download/ENCFF367OYT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF895DLK bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF643CGH 389329678 ENCODE Processing Pipeline f1249ffc958cc5e290be8596331f4c85 https://www.encodeproject.org/files/ENCFF895DLK/@@download/ENCFF895DLK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF024GIB bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF643CGH, ENCFF875MOP 3833399693 ENCODE Processing Pipeline dd8ee43001715aa44458dcca9ec0a6d1 https://www.encodeproject.org/files/ENCFF024GIB/@@download/ENCFF024GIB.bam GRCh38 released ENCFF411XGJ bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF643CGH, ENCFF958CWG 4982989929 ENCODE Processing Pipeline 24a64686ed80b8cbd9daa665919c4d1b https://www.encodeproject.org/files/ENCFF411XGJ/@@download/ENCFF411XGJ.bam GRCh38 released ENCFF126FTH bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF643CGH 3199254662 ENCODE Processing Pipeline c572e017d4ba251ffe3c8a14255e5b77 https://www.encodeproject.org/files/ENCFF126FTH/@@download/ENCFF126FTH.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF008AZP bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF643CGH 5897168162 ENCODE Processing Pipeline ba715268bc071f2c229b0adf751ea84a https://www.encodeproject.org/files/ENCFF008AZP/@@download/ENCFF008AZP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF259XPA bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF643CGH 3501347226 ENCODE Processing Pipeline 118e68c5da27845e09a9981eb9d58431 https://www.encodeproject.org/files/ENCFF259XPA/@@download/ENCFF259XPA.bam GRCh38 released low read depth ENCFF153QLL bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF643CGH 3539626268 ENCODE Processing Pipeline aa839266379f2b3e79c0dc37cc837532 https://www.encodeproject.org/files/ENCFF153QLL/@@download/ENCFF153QLL.bam GRCh38 released low read depth ENCFF880ODJ bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF643CGH 859812040 ENCODE Processing Pipeline dbbbab4563e8df5497395badf2af1024 https://www.encodeproject.org/files/ENCFF880ODJ/@@download/ENCFF880ODJ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF726AYE bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF643CGH 837797765 ENCODE Processing Pipeline 2bf210d389812a4e36bf06d0f9923f56 https://www.encodeproject.org/files/ENCFF726AYE/@@download/ENCFF726AYE.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF266ESX bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF643CGH 5534388718 ENCODE Processing Pipeline 63e94a1edc5c23caa20845de4ae2108c https://www.encodeproject.org/files/ENCFF266ESX/@@download/ENCFF266ESX.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF929ENS bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF643CGH 5625221603 ENCODE Processing Pipeline f69e7f978385d5f084563aab956698eb https://www.encodeproject.org/files/ENCFF929ENS/@@download/ENCFF929ENS.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF537JSG bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 50 ENCFF116EZS, ENCFF133ABX, ENCFF643CGH 916866593 ENCODE Processing Pipeline 0767dfc45886c1dd91842d0d1a4b1e93 https://www.encodeproject.org/files/ENCFF537JSG/@@download/ENCFF537JSG.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF005WQC bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 50 ENCFF134EOW, ENCFF479NRX, ENCFF643CGH 1492126111 ENCODE Processing Pipeline f6dd27428b7eac3074afb4b00902794e https://www.encodeproject.org/files/ENCFF005WQC/@@download/ENCFF005WQC.bam GRCh38 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF260PNL bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELN, ENCFF002ELO, ENCFF643CGH 3604425742 ENCODE Processing Pipeline 013a1ca82f94099a619aba30f919dd88 https://www.encodeproject.org/files/ENCFF260PNL/@@download/ENCFF260PNL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF095KVR bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF643CGH, ENCFF722ZLB 4469935422 ENCODE Processing Pipeline 885ffcd68b39d27dc6ced267205fb752 https://www.encodeproject.org/files/ENCFF095KVR/@@download/ENCFF095KVR.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF063JBE bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF643CGH 4561353866 ENCODE Processing Pipeline 93bc9bcba78bfc8b84c50f73786680c1 https://www.encodeproject.org/files/ENCFF063JBE/@@download/ENCFF063JBE.bam GRCh38 released ENCFF924HNJ bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF643CGH, ENCFF957SQS 4206456919 ENCODE Processing Pipeline 38562b22c5b4cf474707cda9bdc25125 https://www.encodeproject.org/files/ENCFF924HNJ/@@download/ENCFF924HNJ.bam GRCh38 released ENCFF023IKP bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF643CGH 4106654466 ENCODE Processing Pipeline f9ebbbcabc2701ffb33ad4fe945927c4 https://www.encodeproject.org/files/ENCFF023IKP/@@download/ENCFF023IKP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF653RTQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF643CGH 4592822778 ENCODE Processing Pipeline cf534a9065e4a802973599976131fe47 https://www.encodeproject.org/files/ENCFF653RTQ/@@download/ENCFF653RTQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF993WWR bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF643CGH 885450985 ENCODE Processing Pipeline 122d8073c8501a4acc2dd871e813f2d9 https://www.encodeproject.org/files/ENCFF993WWR/@@download/ENCFF993WWR.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF209PBB bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF643CGH, ENCFF751TBY 1245718059 ENCODE Processing Pipeline 7445c4821731003a5e38cc2f9ddc9f3c https://www.encodeproject.org/files/ENCFF209PBB/@@download/ENCFF209PBB.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF740KXF bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF002DOS, ENCFF002EIH, ENCFF643CGH 5641532600 ENCODE Processing Pipeline 8f1c0a553d96e95d5c066bdd7266013d https://www.encodeproject.org/files/ENCFF740KXF/@@download/ENCFF740KXF.bam GRCh38 released experiment not submitted to GEO ENCFF958OLE bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF643CGH, ENCFF679YFV 4837726108 ENCODE Processing Pipeline d9ce6f3bc996098821efd698be86e1b8 https://www.encodeproject.org/files/ENCFF958OLE/@@download/ENCFF958OLE.bam GRCh38 released experiment not submitted to GEO ENCFF358SGU bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF796GTV 517203242 ENCODE Processing Pipeline 21108a8a47c87bb26a5f826fb2bafafe https://www.encodeproject.org/files/ENCFF358SGU/@@download/ENCFF358SGU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF926HJH bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF643CGH 981132995 ENCODE Processing Pipeline 8d5f2ac16c5f97b6e72b7294d18c8674 https://www.encodeproject.org/files/ENCFF926HJH/@@download/ENCFF926HJH.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF737QWX bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF643CGH, ENCFF662MFL 5154502247 ENCODE Processing Pipeline a3843f0184ee828c7a793fad680b5e0a https://www.encodeproject.org/files/ENCFF737QWX/@@download/ENCFF737QWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF829UMN bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF643CGH, ENCFF902JCN 4408164762 ENCODE Processing Pipeline 634a529954b2c1143cf4db764f7d5b71 https://www.encodeproject.org/files/ENCFF829UMN/@@download/ENCFF829UMN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF547XPS bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF643CGH, ENCFF863GPM 3919869211 ENCODE Processing Pipeline 8913fb1e591cadceb364efdbee5df5c6 https://www.encodeproject.org/files/ENCFF547XPS/@@download/ENCFF547XPS.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF938OSW bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF643CGH 6129482922 ENCODE Processing Pipeline 00e824e80ccb339c3014997e21e82a9f https://www.encodeproject.org/files/ENCFF938OSW/@@download/ENCFF938OSW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF145BPW bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF643CGH 1191857576 ENCODE Processing Pipeline bb903f6c465c637ef14ec201007d1ebc https://www.encodeproject.org/files/ENCFF145BPW/@@download/ENCFF145BPW.bam GRCh38 released ENCFF207IEO bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF643CGH 1421144123 ENCODE Processing Pipeline 31311f887a683b2dbf343f4f3e735535 https://www.encodeproject.org/files/ENCFF207IEO/@@download/ENCFF207IEO.bam GRCh38 released ENCFF281QAQ bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF643CGH 5300578472 ENCODE Processing Pipeline 580519a18a41827fd99552625336ec40 https://www.encodeproject.org/files/ENCFF281QAQ/@@download/ENCFF281QAQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF246BAG bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF643CGH 5596608816 ENCODE Processing Pipeline cda726874ccb2ce3e12e534c6d84bd8e https://www.encodeproject.org/files/ENCFF246BAG/@@download/ENCFF246BAG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF700AOV bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF643CGH 3040264100 ENCODE Processing Pipeline cc88bece909250d0dd54141d0c72e9f3 https://www.encodeproject.org/files/ENCFF700AOV/@@download/ENCFF700AOV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF424CSY bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF878ZEU, ENCFF899JOK 5249848816 ENCODE Processing Pipeline 8bb28558b53fb91da16a89f05e8f92ff https://www.encodeproject.org/files/ENCFF424CSY/@@download/ENCFF424CSY.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF719FYJ bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF643CGH, ENCFF780EID 3840034908 ENCODE Processing Pipeline b6d8eee258aff2aa574291736e2ece0d https://www.encodeproject.org/files/ENCFF719FYJ/@@download/ENCFF719FYJ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF883MZR bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF643CGH, ENCFF951ZXP 2628528434 ENCODE Processing Pipeline f605018051189139eed2d8361ed79032 https://www.encodeproject.org/files/ENCFF883MZR/@@download/ENCFF883MZR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF606HTE bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF643CGH, ENCFF903BWT 4920822240 ENCODE Processing Pipeline b3161a03665534cfaf7570b35f8bee28 https://www.encodeproject.org/files/ENCFF606HTE/@@download/ENCFF606HTE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF663CXE bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF643CGH 5495864408 ENCODE Processing Pipeline 137b7561fc78db9899559a18c7251946 https://www.encodeproject.org/files/ENCFF663CXE/@@download/ENCFF663CXE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF988DLZ bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF643CGH, ENCFF784VKF 4822495994 ENCODE Processing Pipeline 3cc1f498bcc60329620476b1adca0d8f https://www.encodeproject.org/files/ENCFF988DLZ/@@download/ENCFF988DLZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF957CQI bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTV, ENCFF002EHV, ENCFF643CGH 5565117541 ENCODE Processing Pipeline 8c8f32bde4c2abc29a5d0dd2c85b4625 https://www.encodeproject.org/files/ENCFF957CQI/@@download/ENCFF957CQI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF207QWX bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF643CGH 4420693368 ENCODE Processing Pipeline 8bb81145e564085d77acfdb105a42cef https://www.encodeproject.org/files/ENCFF207QWX/@@download/ENCFF207QWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF740JFH bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF643CGH 5506916906 ENCODE Processing Pipeline c24bf9819074b550d337bd13413f9783 https://www.encodeproject.org/files/ENCFF740JFH/@@download/ENCFF740JFH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF364SJK bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF643CGH, ENCFF692TZI, ENCFF762YIW 4411681149 ENCODE Processing Pipeline f1b53ba60a083375d5f08982e907f8f8 https://www.encodeproject.org/files/ENCFF364SJK/@@download/ENCFF364SJK.bam GRCh38 released mild to moderate bottlenecking ENCFF611PXX bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF643CGH 5409274518 ENCODE Processing Pipeline d70496bf33fb7e117bef5543532cca57 https://www.encodeproject.org/files/ENCFF611PXX/@@download/ENCFF611PXX.bam GRCh38 released mild to moderate bottlenecking ENCFF546ZLD bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF643CGH, ENCFF881HGO 3173473404 ENCODE Processing Pipeline 8f0d0b75135525d994694663063d1d3c https://www.encodeproject.org/files/ENCFF546ZLD/@@download/ENCFF546ZLD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF562ATM bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF643CGH, ENCFF771DFR, ENCFF931EDX 3109946312 ENCODE Processing Pipeline 96b42574ea083b41988598703d091128 https://www.encodeproject.org/files/ENCFF562ATM/@@download/ENCFF562ATM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749AWO bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF643CGH 385115912 ENCODE Processing Pipeline 22d2e69692a8e6ec4b4a93abdb2f9b5d https://www.encodeproject.org/files/ENCFF749AWO/@@download/ENCFF749AWO.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF310IBX bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF643CGH, ENCFF854UWR, ENCFF989WYW 885096064 ENCODE Processing Pipeline ec7530be5c5ab692d0352995ce29a992 https://www.encodeproject.org/files/ENCFF310IBX/@@download/ENCFF310IBX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF904GDU bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF643CGH, ENCFF791KUN 4174781595 ENCODE Processing Pipeline c8ac5346f39996abc997ca4fd2e6889c https://www.encodeproject.org/files/ENCFF904GDU/@@download/ENCFF904GDU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF926QFI bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF643CGH, ENCFF655DBC 3805870847 ENCODE Processing Pipeline 6639c3eeca2f3bd2c2f709641d7239f0 https://www.encodeproject.org/files/ENCFF926QFI/@@download/ENCFF926QFI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF505ODA bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF643CGH 1137695032 ENCODE Processing Pipeline bcfabf4934b6645d4f065e2eddb4fcee https://www.encodeproject.org/files/ENCFF505ODA/@@download/ENCFF505ODA.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF078OAW bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF643CGH, ENCFF657KNO 873641972 ENCODE Processing Pipeline abd0f35a426c8b4c9b9bc89a8e3259cc https://www.encodeproject.org/files/ENCFF078OAW/@@download/ENCFF078OAW.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF130UZR bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF643CGH 2781340543 ENCODE Processing Pipeline 5287aaa8b15422400d368eb9395333ef https://www.encodeproject.org/files/ENCFF130UZR/@@download/ENCFF130UZR.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF126ZOC bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF643CGH, ENCFF853FSA 3862122632 ENCODE Processing Pipeline 61a8e5134bcabb01da2f1a90c9b97db6 https://www.encodeproject.org/files/ENCFF126ZOC/@@download/ENCFF126ZOC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF242MGC bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF643CGH 4675090553 ENCODE Processing Pipeline 920b59a0af0edf5d5964d5f44a0ec63a https://www.encodeproject.org/files/ENCFF242MGC/@@download/ENCFF242MGC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF599QHU bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF643CGH, ENCFF650VLS 6971307495 ENCODE Processing Pipeline 1582f50aa76ff004aceaf3574acaeb9e https://www.encodeproject.org/files/ENCFF599QHU/@@download/ENCFF599QHU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF618RUK bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF675CSM, ENCFF784RTY 5168976996 ENCODE Processing Pipeline 79dd5ae1eadf45713f20e03118428d06 https://www.encodeproject.org/files/ENCFF618RUK/@@download/ENCFF618RUK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF675DVT bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF643CGH, ENCFF859PAK 4975027776 ENCODE Processing Pipeline e5d0009272bc457ed82e877bbaf348d9 https://www.encodeproject.org/files/ENCFF675DVT/@@download/ENCFF675DVT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF691TZW bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF643CGH 3862231155 ENCODE Processing Pipeline 1d47e80821dc0c2c54e17245a27b9f84 https://www.encodeproject.org/files/ENCFF691TZW/@@download/ENCFF691TZW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF162XYQ bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF643CGH, ENCFF930PJS 4984579232 ENCODE Processing Pipeline 7a30f6d6ed29c3e5a5a65cb44f4ce7b2 https://www.encodeproject.org/files/ENCFF162XYQ/@@download/ENCFF162XYQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF844CVM bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF643CGH 4171149707 ENCODE Processing Pipeline a7c8caa65cf8cf05b2fc4ae9e1a2ff14 https://www.encodeproject.org/files/ENCFF844CVM/@@download/ENCFF844CVM.bam GRCh38 released mild to moderate bottlenecking ENCFF541BNH bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF643CGH 4192789093 ENCODE Processing Pipeline 8970643dcd434d43e2649d36e616bd3d https://www.encodeproject.org/files/ENCFF541BNH/@@download/ENCFF541BNH.bam GRCh38 released mild to moderate bottlenecking ENCFF548STV bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF643CGH 3464471563 ENCODE Processing Pipeline ab1f7585b1c690b8e0e13f230e654ff2 https://www.encodeproject.org/files/ENCFF548STV/@@download/ENCFF548STV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF350NUJ bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF643CGH 4712081683 ENCODE Processing Pipeline cc41d836dc041b5a8ba6f36c7bd00569 https://www.encodeproject.org/files/ENCFF350NUJ/@@download/ENCFF350NUJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF695PBX bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF643CGH 619607598 ENCODE Processing Pipeline c9bdf40a39f488cc1a918347b8f5665b https://www.encodeproject.org/files/ENCFF695PBX/@@download/ENCFF695PBX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF558RNX bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF643CGH 452564345 ENCODE Processing Pipeline ab398a589ab89ebcb59ad9c0d057936c https://www.encodeproject.org/files/ENCFF558RNX/@@download/ENCFF558RNX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF368FEM bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF643CGH 777566319 ENCODE Processing Pipeline 52aafdc446c32b3c0761c09c5b6fa945 https://www.encodeproject.org/files/ENCFF368FEM/@@download/ENCFF368FEM.bam GRCh38 released low read length, low read depth ENCFF705TRN bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF643CGH 867216748 ENCODE Processing Pipeline c32bbdfbd8536797a889c6ca123839aa https://www.encodeproject.org/files/ENCFF705TRN/@@download/ENCFF705TRN.bam GRCh38 released low read length, low read depth ENCFF367ZGL bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF643CGH, ENCFF750VZA 794137418 ENCODE Processing Pipeline 66493ab92bce64218f402427491ae927 https://www.encodeproject.org/files/ENCFF367ZGL/@@download/ENCFF367ZGL.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF627NWR bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF643CGH, ENCFF989EPR 2241034332 ENCODE Processing Pipeline 1ec81b80dc538ceff1d047604be0f42b https://www.encodeproject.org/files/ENCFF627NWR/@@download/ENCFF627NWR.bam GRCh38 released low read length, mild to moderate bottlenecking ENCFF453IQG bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF372SMO, ENCFF643CGH 942890973 ENCODE Processing Pipeline 5a13f30a899ca11fa4ca017d8fa8e9c1 https://www.encodeproject.org/files/ENCFF453IQG/@@download/ENCFF453IQG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF262EDN bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF360YKR, ENCFF643CGH 3847281967 ENCODE Processing Pipeline b877ec85bc47904a9c8f436f00f4f23e https://www.encodeproject.org/files/ENCFF262EDN/@@download/ENCFF262EDN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF263DIR bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF643CGH 5232136801 ENCODE Processing Pipeline 3b42bd8ef4b603dba5d4119308a88325 https://www.encodeproject.org/files/ENCFF263DIR/@@download/ENCFF263DIR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF850CXR bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF643CGH 5299495577 ENCODE Processing Pipeline 1224ad36253d118c50b5ba2613c730cd https://www.encodeproject.org/files/ENCFF850CXR/@@download/ENCFF850CXR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF379VLE bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF643CGH 4452991753 ENCODE Processing Pipeline 0d1b10702f592f130e1b64e0ca50f67c https://www.encodeproject.org/files/ENCFF379VLE/@@download/ENCFF379VLE.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF702BVO bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF643CGH, ENCFF732PVD 5044485832 ENCODE Processing Pipeline a14292cd3ffdfeef1078598942dd65a2 https://www.encodeproject.org/files/ENCFF702BVO/@@download/ENCFF702BVO.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF043GOQ bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF643CGH, ENCFF765LUQ 1108177633 ENCODE Processing Pipeline bb27367796e668f0708528c5f5902dff https://www.encodeproject.org/files/ENCFF043GOQ/@@download/ENCFF043GOQ.bam GRCh38 released missing genetic modification characterization ENCFF790XOB bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF643CGH 1163845119 ENCODE Processing Pipeline b0b1b86f198ed7e6057df3134cc71a89 https://www.encodeproject.org/files/ENCFF790XOB/@@download/ENCFF790XOB.bam GRCh38 released missing genetic modification characterization ENCFF627BPU bam alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF643CGH, ENCFF832NVU, ENCFF988YXY 7740865124 ENCODE Processing Pipeline 0eb428e482d99122e80fd35239e9afba https://www.encodeproject.org/files/ENCFF627BPU/@@download/ENCFF627BPU.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF532XHX bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF643CGH 4402869375 ENCODE Processing Pipeline a6622e0997e14371a698733d22dc1c57 https://www.encodeproject.org/files/ENCFF532XHX/@@download/ENCFF532XHX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF112UNI bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF643CGH, ENCFF889HHE 5408231409 ENCODE Processing Pipeline 946e90709d056d4195754063e7155cd6 https://www.encodeproject.org/files/ENCFF112UNI/@@download/ENCFF112UNI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF222UZK bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF643CGH 1296042131 ENCODE Processing Pipeline 9c4f3d1e8c601da3d6169561b011b774 https://www.encodeproject.org/files/ENCFF222UZK/@@download/ENCFF222UZK.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF526DBU bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF643CGH 1470060274 ENCODE Processing Pipeline 20b7e2b1fa239e377d49ad247f1cfaaf https://www.encodeproject.org/files/ENCFF526DBU/@@download/ENCFF526DBU.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF258DFY bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF643CGH, ENCFF841ZHV 4239575023 ENCODE Processing Pipeline ac07e8792229a80001cdda9f034676c4 https://www.encodeproject.org/files/ENCFF258DFY/@@download/ENCFF258DFY.bam GRCh38 released ENCFF490XTX bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF643CGH 5340524575 ENCODE Processing Pipeline 25811220501de9f020b6350c0a86c669 https://www.encodeproject.org/files/ENCFF490XTX/@@download/ENCFF490XTX.bam GRCh38 released ENCFF313RGT bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF643CGH 559679591 ENCODE Processing Pipeline 992122e4aea6fb1847578d0a22735134 https://www.encodeproject.org/files/ENCFF313RGT/@@download/ENCFF313RGT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF681AFR bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF643CGH, ENCFF805VUU 714909734 ENCODE Processing Pipeline bb541818a98cbc5a369350de896278fb https://www.encodeproject.org/files/ENCFF681AFR/@@download/ENCFF681AFR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF340SPK bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF643CGH 617910247 ENCODE Processing Pipeline 59a24cebb68d8f1f4a70ecf3af93815e https://www.encodeproject.org/files/ENCFF340SPK/@@download/ENCFF340SPK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF746KYL bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF643CGH 896835945 ENCODE Processing Pipeline 873f299ed6d40f2a415ceb625f57bbdf https://www.encodeproject.org/files/ENCFF746KYL/@@download/ENCFF746KYL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF092CZO bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF643CGH 868581202 ENCODE Processing Pipeline e08c48e37c5e200b9d7a08deae3188cd https://www.encodeproject.org/files/ENCFF092CZO/@@download/ENCFF092CZO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF863PSQ bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF643CGH 513506594 ENCODE Processing Pipeline 8e1ed0f4b5774c82739d2b41077c2f36 https://www.encodeproject.org/files/ENCFF863PSQ/@@download/ENCFF863PSQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF340HRS bam alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF643CGH 4280118751 ENCODE Processing Pipeline 001acfab08a77b0ef79553875a0cf545 https://www.encodeproject.org/files/ENCFF340HRS/@@download/ENCFF340HRS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF459MNI bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF643CGH, ENCFF935GDU 3732395970 ENCODE Processing Pipeline 03c54338d5cc2afc578eae917b0fe13b https://www.encodeproject.org/files/ENCFF459MNI/@@download/ENCFF459MNI.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF706XFF bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF643CGH, ENCFF656UEH 3511182038 ENCODE Processing Pipeline 2ed5208dc0128e5916a3ee9565c92d4d https://www.encodeproject.org/files/ENCFF706XFF/@@download/ENCFF706XFF.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF022UTU bam alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF643CGH, ENCFF837RUP 4030714108 ENCODE Processing Pipeline 1eee205813f109b4e1af912a1a9ca097 https://www.encodeproject.org/files/ENCFF022UTU/@@download/ENCFF022UTU.bam GRCh38 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF953OAD bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF643CGH 742065457 ENCODE Processing Pipeline 98942f0a15c0bb5dd857d95be3ae1535 https://www.encodeproject.org/files/ENCFF953OAD/@@download/ENCFF953OAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF551QAX bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF643CGH 848027264 ENCODE Processing Pipeline 417a0c8c7c44ec6d616e768d37d041ea https://www.encodeproject.org/files/ENCFF551QAX/@@download/ENCFF551QAX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF489YJG bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF643CGH 295652858 ENCODE Processing Pipeline 7031ee261d34a0181e90a8eb66233bc7 https://www.encodeproject.org/files/ENCFF489YJG/@@download/ENCFF489YJG.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF728WOA bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF643CGH 456102128 ENCODE Processing Pipeline 09abc70cbfdd32d6028c5613b7b1536f https://www.encodeproject.org/files/ENCFF728WOA/@@download/ENCFF728WOA.bam GRCh38 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF008IZS bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF643CGH, ENCFF763NMB 4771040275 ENCODE Processing Pipeline 4bb127af9ab8944560b7b535a5e40379 https://www.encodeproject.org/files/ENCFF008IZS/@@download/ENCFF008IZS.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF599IYT bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF643CGH 7686577584 ENCODE Processing Pipeline 938c9bc96c10906530aef62d7b5d5b31 https://www.encodeproject.org/files/ENCFF599IYT/@@download/ENCFF599IYT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF227TEG bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF734FMD, ENCFF862UUB 1125039299 ENCODE Processing Pipeline 4d22f14f4a745b23db1e37cff39298c2 https://www.encodeproject.org/files/ENCFF227TEG/@@download/ENCFF227TEG.bam GRCh38 released missing genetic modification characterization ENCFF398UYF bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF962FCU, ENCFF994DBJ 1141050630 ENCODE Processing Pipeline fb6213602f3784da70787c09666dc466 https://www.encodeproject.org/files/ENCFF398UYF/@@download/ENCFF398UYF.bam GRCh38 released missing genetic modification characterization ENCFF281FRR bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF643CGH 532601731 ENCODE Processing Pipeline 8cf1c3ac22adb3038a73178fbf453044 https://www.encodeproject.org/files/ENCFF281FRR/@@download/ENCFF281FRR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF122ECM bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF643CGH 1002350183 ENCODE Processing Pipeline a803f0442da91e49f41539c9d0c9e359 https://www.encodeproject.org/files/ENCFF122ECM/@@download/ENCFF122ECM.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF687SRD bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF643CGH 4166807868 ENCODE Processing Pipeline 9cedcfb293cd05dc07b6adcb41c301db https://www.encodeproject.org/files/ENCFF687SRD/@@download/ENCFF687SRD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF890NVN bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF643CGH 4588710104 ENCODE Processing Pipeline af7ab54595752ab1892755630a6d3a3a https://www.encodeproject.org/files/ENCFF890NVN/@@download/ENCFF890NVN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF344DOB bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF643CGH 2701515041 ENCODE Processing Pipeline 6f5e1feba2384f2b45bf1a864194fea4 https://www.encodeproject.org/files/ENCFF344DOB/@@download/ENCFF344DOB.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF366ZYM bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF643CGH, ENCFF959SZB 3284354532 ENCODE Processing Pipeline a164254f4914f714d9f90b6fc47151f8 https://www.encodeproject.org/files/ENCFF366ZYM/@@download/ENCFF366ZYM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF652SLC bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF835OOH, ENCFF931JHV 2801652025 ENCODE Processing Pipeline af76461d5cd55a2cdb10d67a6ef543ef https://www.encodeproject.org/files/ENCFF652SLC/@@download/ENCFF652SLC.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF167HRH bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF643CGH 3788668422 ENCODE Processing Pipeline 9e60bffeb0082a07199cc971908f20f2 https://www.encodeproject.org/files/ENCFF167HRH/@@download/ENCFF167HRH.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF240BDN bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF643CGH 3902913952 ENCODE Processing Pipeline 2fb09952da22fa6989dd2d0a86164432 https://www.encodeproject.org/files/ENCFF240BDN/@@download/ENCFF240BDN.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF411KAB bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF643CGH 3374550814 ENCODE Processing Pipeline 4c8d2fe47c8a755735584d1efb389284 https://www.encodeproject.org/files/ENCFF411KAB/@@download/ENCFF411KAB.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF239JHG bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF643CGH 4042320616 ENCODE Processing Pipeline d8bfd65598de7e8426b4b6b03a111ad2 https://www.encodeproject.org/files/ENCFF239JHG/@@download/ENCFF239JHG.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF181NHZ bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF643CGH, ENCFF886VXN 4987748102 ENCODE Processing Pipeline 5c1646f5de8ccaf99ceb64d8c51a7441 https://www.encodeproject.org/files/ENCFF181NHZ/@@download/ENCFF181NHZ.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF990RGE bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF643CGH 4058830620 ENCODE Processing Pipeline 0784d80d2ec22873b8af398a4b6c95af https://www.encodeproject.org/files/ENCFF990RGE/@@download/ENCFF990RGE.bam GRCh38 released ENCFF205JWI bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF643CGH 4126083015 ENCODE Processing Pipeline 3a37d4338adaeb55f40908d10aaf2e01 https://www.encodeproject.org/files/ENCFF205JWI/@@download/ENCFF205JWI.bam GRCh38 released ENCFF063AFU bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF643CGH 992722795 ENCODE Processing Pipeline 3ca6f0f166f002aafd0efa8b5299abb1 https://www.encodeproject.org/files/ENCFF063AFU/@@download/ENCFF063AFU.bam GRCh38 released low read length ENCFF421XBU bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF643CGH 879730867 ENCODE Processing Pipeline efd39dec2de505c42a5573cce8b0bbc3 https://www.encodeproject.org/files/ENCFF421XBU/@@download/ENCFF421XBU.bam GRCh38 released low read length ENCFF047IWR bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 100 ENCFF482ODR, ENCFF643CGH, ENCFF987YBA 3050785616 ENCODE Processing Pipeline 8936c9d137f75beb9801c03330b6af1e https://www.encodeproject.org/files/ENCFF047IWR/@@download/ENCFF047IWR.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF662HRL bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF703DNA, ENCFF958CZA 3439373677 ENCODE Processing Pipeline 2345c765358000c245c049a418898537 https://www.encodeproject.org/files/ENCFF662HRL/@@download/ENCFF662HRL.bam GRCh38 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF585ZIJ bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF643CGH, ENCFF699UWV 2764973764 ENCODE Processing Pipeline 73941632302f1dd5e345a99e2c968415 https://www.encodeproject.org/files/ENCFF585ZIJ/@@download/ENCFF585ZIJ.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF241ICI bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF643CGH, ENCFF868YNQ 5311210430 ENCODE Processing Pipeline 4ccb947e5112b4bc38cedb51b1c10975 https://www.encodeproject.org/files/ENCFF241ICI/@@download/ENCFF241ICI.bam GRCh38 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF015EFN bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF643CGH 704031208 ENCODE Processing Pipeline e9a740698b176e5d47b213f6ad99668a https://www.encodeproject.org/files/ENCFF015EFN/@@download/ENCFF015EFN.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF654JAY bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF643CGH 926354738 ENCODE Processing Pipeline fb622d21355346dc2c94583ece83e4e1 https://www.encodeproject.org/files/ENCFF654JAY/@@download/ENCFF654JAY.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF064EQH bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF643CGH, ENCFF654OPW 3443961941 ENCODE Processing Pipeline d4c7b7eb8572f50e5e99dc911d2afb41 https://www.encodeproject.org/files/ENCFF064EQH/@@download/ENCFF064EQH.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF493TBA bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF643CGH, ENCFF988RPN 4194201458 ENCODE Processing Pipeline 49f6fffdf4aec7e0facbbfcf72aa74c2 https://www.encodeproject.org/files/ENCFF493TBA/@@download/ENCFF493TBA.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF677VYD bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF643CGH 740400891 ENCODE Processing Pipeline 07fbf97301870983aaddc3c976130b37 https://www.encodeproject.org/files/ENCFF677VYD/@@download/ENCFF677VYD.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF533DRO bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF643CGH, ENCFF742IYU 812251068 ENCODE Processing Pipeline fd7af68987976e3e9208089993dccf90 https://www.encodeproject.org/files/ENCFF533DRO/@@download/ENCFF533DRO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF826IAN bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF643CGH 5285340328 ENCODE Processing Pipeline ecff940462e0b4f4e95518d7105e7850 https://www.encodeproject.org/files/ENCFF826IAN/@@download/ENCFF826IAN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF033WZV bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF643CGH 5774801989 ENCODE Processing Pipeline c29d8840d81c92295aa68112f53a9c5c https://www.encodeproject.org/files/ENCFF033WZV/@@download/ENCFF033WZV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF533XCY bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF643CGH, ENCFF685PQB 6382287314 ENCODE Processing Pipeline cc56b3d6c3fe849fe38c724bf04877ec https://www.encodeproject.org/files/ENCFF533XCY/@@download/ENCFF533XCY.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF071SPF bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF643CGH 2340746392 ENCODE Processing Pipeline 866dabbd7cd652468947d53ceae0ef71 https://www.encodeproject.org/files/ENCFF071SPF/@@download/ENCFF071SPF.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF827AFP bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF696YWZ, ENCFF742XIJ 4936727139 ENCODE Processing Pipeline 2525ddebc338d0d3f11522ee7a2c98db https://www.encodeproject.org/files/ENCFF827AFP/@@download/ENCFF827AFP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF055AXC bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF643CGH 9394488664 ENCODE Processing Pipeline 0fea1e06cd8760bc4ddbb178a225fd17 https://www.encodeproject.org/files/ENCFF055AXC/@@download/ENCFF055AXC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF590UVB bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF643CGH 4143280111 ENCODE Processing Pipeline 7c7b66898d0f95677967ba790149cbb4 https://www.encodeproject.org/files/ENCFF590UVB/@@download/ENCFF590UVB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF053PLI bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF643CGH 5262701911 ENCODE Processing Pipeline b8652f53ae35b883dbf0c8fd426104e8 https://www.encodeproject.org/files/ENCFF053PLI/@@download/ENCFF053PLI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF487SUP bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF643CGH 2732703193 ENCODE Processing Pipeline c7a46eba493e27845421b35c488004b3 https://www.encodeproject.org/files/ENCFF487SUP/@@download/ENCFF487SUP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF758LME bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF643CGH 5345463115 ENCODE Processing Pipeline c644eafe702ae5e1f220bd1b19b15b01 https://www.encodeproject.org/files/ENCFF758LME/@@download/ENCFF758LME.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF095SWL bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF643CGH 5791477142 ENCODE Processing Pipeline 5ad6e4abe05f676c0101461bdd768728 https://www.encodeproject.org/files/ENCFF095SWL/@@download/ENCFF095SWL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF240WIT bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF643CGH, ENCFF655ROQ 6658591338 ENCODE Processing Pipeline e5996e6e5e42fee810cd50551351c533 https://www.encodeproject.org/files/ENCFF240WIT/@@download/ENCFF240WIT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF245YPG bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF643CGH, ENCFF736AVM 4024874756 ENCODE Processing Pipeline 3e73b997072745f9a29c0dfa85d68680 https://www.encodeproject.org/files/ENCFF245YPG/@@download/ENCFF245YPG.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF980TTL bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF643CGH, ENCFF712YHQ, ENCFF764UGY 3701706821 ENCODE Processing Pipeline 7168cb9b915287653bef82bb21f2c774 https://www.encodeproject.org/files/ENCFF980TTL/@@download/ENCFF980TTL.bam GRCh38 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF168KTM bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF643CGH 563390708 ENCODE Processing Pipeline a302eab38c73bb9dbb5daf4c6ae64c72 https://www.encodeproject.org/files/ENCFF168KTM/@@download/ENCFF168KTM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF299HHL bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF643CGH 723534974 ENCODE Processing Pipeline 094f08d2915b9d4db76919a59ba37e32 https://www.encodeproject.org/files/ENCFF299HHL/@@download/ENCFF299HHL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF628FHG bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF643CGH, ENCFF841SOA 4548235221 ENCODE Processing Pipeline 05324328311f803da8b17f100d996baa https://www.encodeproject.org/files/ENCFF628FHG/@@download/ENCFF628FHG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF096WSH bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF643CGH, ENCFF979GWR 5214328322 ENCODE Processing Pipeline 3f569c8da80efe53a843c75870e4f9df https://www.encodeproject.org/files/ENCFF096WSH/@@download/ENCFF096WSH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF997DGT bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF643CGH 4285024514 ENCODE Processing Pipeline bdd2c86763eeb46d415e35d4c7c90ab7 https://www.encodeproject.org/files/ENCFF997DGT/@@download/ENCFF997DGT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF156ATQ bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF643CGH, ENCFF680BLN 6161935947 ENCODE Processing Pipeline 87a5b8c96209f41a221acb79a1919b75 https://www.encodeproject.org/files/ENCFF156ATQ/@@download/ENCFF156ATQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF339YFE bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF643CGH, ENCFF864RUH, ENCFF950RDX 4773296352 ENCODE Processing Pipeline af78140f7cb2c6218f3d0bc06d109044 https://www.encodeproject.org/files/ENCFF339YFE/@@download/ENCFF339YFE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF191BKS bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF643CGH 5016259543 ENCODE Processing Pipeline 13d15f48aa193bfc5984c75e085c725d https://www.encodeproject.org/files/ENCFF191BKS/@@download/ENCFF191BKS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF652BBO bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF643CGH, ENCFF738AWV 2289712331 ENCODE Processing Pipeline 8a91759388016fd4f4ebe1b831612af5 https://www.encodeproject.org/files/ENCFF652BBO/@@download/ENCFF652BBO.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF395PJR bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF643CGH 4476585885 ENCODE Processing Pipeline fb2d52c792ca7baa1b30350a05df1273 https://www.encodeproject.org/files/ENCFF395PJR/@@download/ENCFF395PJR.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF594LSU bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF643CGH, ENCFF730SWR 4229466647 ENCODE Processing Pipeline e13de233cb746a5535a7a9fbd6269559 https://www.encodeproject.org/files/ENCFF594LSU/@@download/ENCFF594LSU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF608MRT bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF643CGH 4420867787 ENCODE Processing Pipeline 3c3944acf440a3ec1a4b37bb46310a0f https://www.encodeproject.org/files/ENCFF608MRT/@@download/ENCFF608MRT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF789LIM bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 74 ENCFF643CGH, ENCFF717KPM 1987983126 ENCODE Processing Pipeline 72ca8e7655b7bc6d1f040badb3d0ffd6 https://www.encodeproject.org/files/ENCFF789LIM/@@download/ENCFF789LIM.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF258ZRS bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF342XVP, ENCFF643CGH, ENCFF997NPD 2628045151 ENCODE Processing Pipeline 2d118af9567733aa9d16f43c6334ea3f https://www.encodeproject.org/files/ENCFF258ZRS/@@download/ENCFF258ZRS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF222RLY bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 36 ENCFF499TRH, ENCFF643CGH, ENCFF702LEK 5492356272 ENCODE Processing Pipeline 63e523858699a95e11b5f5453fa99405 https://www.encodeproject.org/files/ENCFF222RLY/@@download/ENCFF222RLY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF181NFB bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF643CGH, ENCFF684UWO 713054293 ENCODE Processing Pipeline 69e36e85fb7a44ede575af78080a38a0 https://www.encodeproject.org/files/ENCFF181NFB/@@download/ENCFF181NFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF158YRG bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF643CGH 4938246740 ENCODE Processing Pipeline a7203c9b0761a8c51b7dba66993cf4f3 https://www.encodeproject.org/files/ENCFF158YRG/@@download/ENCFF158YRG.bam GRCh38 released ENCFF592NOJ bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF643CGH 6760808143 ENCODE Processing Pipeline d11cf06298139ce3967584d60cbed8d7 https://www.encodeproject.org/files/ENCFF592NOJ/@@download/ENCFF592NOJ.bam GRCh38 released ENCFF316XFH bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF643CGH 698288274 ENCODE Processing Pipeline 246f571fd1fa85f17a388d1f83ed5ff8 https://www.encodeproject.org/files/ENCFF316XFH/@@download/ENCFF316XFH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF511XTS bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF643CGH 763817119 ENCODE Processing Pipeline ae14b94fa876d870e290f64e96fa748b https://www.encodeproject.org/files/ENCFF511XTS/@@download/ENCFF511XTS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF303ICH bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF643CGH, ENCFF890FRG 3261635285 ENCODE Processing Pipeline fc0a6acf42e743fe899246a015e5b42a https://www.encodeproject.org/files/ENCFF303ICH/@@download/ENCFF303ICH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF041ZVD bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF643CGH, ENCFF786NXV 5821059847 ENCODE Processing Pipeline 974920a13b6d0f209b21a1e326edbb5b https://www.encodeproject.org/files/ENCFF041ZVD/@@download/ENCFF041ZVD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF805LSA bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF643CGH 5147427656 ENCODE Processing Pipeline 9f84058385f90fde736e8f7bc3fa4be7 https://www.encodeproject.org/files/ENCFF805LSA/@@download/ENCFF805LSA.bam GRCh38 released duplicate lane review ENCFF530DVX bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF643CGH 6573755228 ENCODE Processing Pipeline a3c659d9107fa696eb6c6ddfdc0d8e08 https://www.encodeproject.org/files/ENCFF530DVX/@@download/ENCFF530DVX.bam GRCh38 released duplicate lane review ENCFF644WZX bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELS, ENCFF002ELV, ENCFF643CGH 4253881940 ENCODE Processing Pipeline 26c308bb588f610518e79d84529085d6 https://www.encodeproject.org/files/ENCFF644WZX/@@download/ENCFF644WZX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF447TQI bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF643CGH 5046625148 ENCODE Processing Pipeline 6a8600338088e24817aa6b028eda44ee https://www.encodeproject.org/files/ENCFF447TQI/@@download/ENCFF447TQI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF726DLQ bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF643CGH 1222561961 ENCODE Processing Pipeline ca974efe65fb3fd50536aef49685ea0c https://www.encodeproject.org/files/ENCFF726DLQ/@@download/ENCFF726DLQ.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF073LHY bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF643CGH 1079969044 ENCODE Processing Pipeline 4ca6d97330c25354564bfa5f6e995fac https://www.encodeproject.org/files/ENCFF073LHY/@@download/ENCFF073LHY.bam GRCh38 released low read depth biological replicates with identical biosample missing control alignments ENCFF002FHN bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF643CGH 1034444747 ENCODE Processing Pipeline 20cfda0b36f9878a3868fedf9874765f https://www.encodeproject.org/files/ENCFF002FHN/@@download/ENCFF002FHN.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF836NST bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF643CGH, ENCFF696VXH 1074173245 ENCODE Processing Pipeline c0eeef98b50ccbaf469ee7612fc1bcc0 https://www.encodeproject.org/files/ENCFF836NST/@@download/ENCFF836NST.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF417FHN bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEB, ENCFF643CGH 725898596 ENCODE Processing Pipeline 4d5699d2cd86734f1595141095503f92 https://www.encodeproject.org/files/ENCFF417FHN/@@download/ENCFF417FHN.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF003FNG bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEK, ENCFF643CGH 796413587 ENCODE Processing Pipeline 53866be3b69bf37033b72c5ab053ff58 https://www.encodeproject.org/files/ENCFF003FNG/@@download/ENCFF003FNG.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF396NXZ bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF323EKY, ENCFF546MGM, ENCFF643CGH 4295734765 ENCODE Processing Pipeline 1d24cf696c4cdec362439c0b26d1269a https://www.encodeproject.org/files/ENCFF396NXZ/@@download/ENCFF396NXZ.bam GRCh38 released ENCFF988UCQ bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF283OAI, ENCFF643CGH, ENCFF806EBY 4304293639 ENCODE Processing Pipeline 49e7411e020ca85772a332d8f2169e47 https://www.encodeproject.org/files/ENCFF988UCQ/@@download/ENCFF988UCQ.bam GRCh38 released ENCFF920NRF bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF643CGH, ENCFF759CFO 4596330079 ENCODE Processing Pipeline de50bb9a95156eed50002d2af2a8674e https://www.encodeproject.org/files/ENCFF920NRF/@@download/ENCFF920NRF.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF363DXD bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF643CGH 8502984807 ENCODE Processing Pipeline a6bec87cbb657eea65ed45634cef2219 https://www.encodeproject.org/files/ENCFF363DXD/@@download/ENCFF363DXD.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF427SHL bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF643CGH 849069726 ENCODE Processing Pipeline dc5020d1350834204d487af7fcbc4272 https://www.encodeproject.org/files/ENCFF427SHL/@@download/ENCFF427SHL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF205TCG bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF643CGH 1026723099 ENCODE Processing Pipeline db5ce0977713cfec1c522903ee6576f2 https://www.encodeproject.org/files/ENCFF205TCG/@@download/ENCFF205TCG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF590TPY bam alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF643CGH, ENCFF706PQV 3410169536 ENCODE Processing Pipeline 55862d4064b0721b4f42f140fcc7dc14 https://www.encodeproject.org/files/ENCFF590TPY/@@download/ENCFF590TPY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF581AZU bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF643CGH, ENCFF645REX 1366161373 ENCODE Processing Pipeline 5f96fe857dd7a08040bfbf2f6817eb44 https://www.encodeproject.org/files/ENCFF581AZU/@@download/ENCFF581AZU.bam GRCh38 released missing genetic modification characterization ENCFF500HFO bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF643CGH 1505923252 ENCODE Processing Pipeline 8cb541c3b2ed9c35903cf275e07465f5 https://www.encodeproject.org/files/ENCFF500HFO/@@download/ENCFF500HFO.bam GRCh38 released missing genetic modification characterization ENCFF597WPX bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF643CGH, ENCFF774QGH 1380204496 ENCODE Processing Pipeline bf4104c87586ed05858471be4bd6fbdf https://www.encodeproject.org/files/ENCFF597WPX/@@download/ENCFF597WPX.bam GRCh38 released missing genetic modification characterization ENCFF856EXS bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF643CGH 1735659003 ENCODE Processing Pipeline 80e5d095cbf4624e065f7c1553b9b1c3 https://www.encodeproject.org/files/ENCFF856EXS/@@download/ENCFF856EXS.bam GRCh38 released missing genetic modification characterization ENCFF503HYC bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF643CGH 748536102 ENCODE Processing Pipeline 58ab6cfeb44d76cf87e86b8030588256 https://www.encodeproject.org/files/ENCFF503HYC/@@download/ENCFF503HYC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF599KFZ bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF643CGH 496412119 ENCODE Processing Pipeline a92e5779e05d22d7fcd65ed7bca0f253 https://www.encodeproject.org/files/ENCFF599KFZ/@@download/ENCFF599KFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF711LPL bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF643CGH, ENCFF777VSO, ENCFF838CMG 7573178744 ENCODE Processing Pipeline 4f9bb5ffbbb87627ebe9231c43e694cb https://www.encodeproject.org/files/ENCFF711LPL/@@download/ENCFF711LPL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF183SXR bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF643CGH, ENCFF677OAS, ENCFF717IEJ 11559569552 ENCODE Processing Pipeline e443733005bd1d3a27376335a0bb3e41 https://www.encodeproject.org/files/ENCFF183SXR/@@download/ENCFF183SXR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF210JIP bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 50 ENCFF029VDC, ENCFF643CGH, ENCFF689PMN 1005428864 ENCODE Processing Pipeline b163c29b49113016b20d22cf4ec113c9 https://www.encodeproject.org/files/ENCFF210JIP/@@download/ENCFF210JIP.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF634BDN bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 50 ENCFF552KRG, ENCFF639TAD, ENCFF643CGH 1330737938 ENCODE Processing Pipeline 2bfb26aa5ee5a341f414f42dd8e364c1 https://www.encodeproject.org/files/ENCFF634BDN/@@download/ENCFF634BDN.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO ENCFF284MLL bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF643CGH, ENCFF971NWQ 730792075 ENCODE Processing Pipeline 6acf6268341b5891ed1f4715454a5b46 https://www.encodeproject.org/files/ENCFF284MLL/@@download/ENCFF284MLL.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF465ZZG bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF643CGH, ENCFF923QSF 1121821316 ENCODE Processing Pipeline 2bc2ae30b53a1a225d6d53172a93d82b https://www.encodeproject.org/files/ENCFF465ZZG/@@download/ENCFF465ZZG.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF340QCB bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF643CGH 605403432 ENCODE Processing Pipeline a80036176a0198b54323b81a6b7a6291 https://www.encodeproject.org/files/ENCFF340QCB/@@download/ENCFF340QCB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF426RGL bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF643CGH 1063401678 ENCODE Processing Pipeline 1347ae3db03cd269565f27aee07a837f https://www.encodeproject.org/files/ENCFF426RGL/@@download/ENCFF426RGL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF391TOS bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF643CGH 426035349 ENCODE Processing Pipeline b02d2f7407e7b79719d291bffb4aebe1 https://www.encodeproject.org/files/ENCFF391TOS/@@download/ENCFF391TOS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF104FDK bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF643CGH 757518102 ENCODE Processing Pipeline a5d0d6bb26db63941a0186f1728c9676 https://www.encodeproject.org/files/ENCFF104FDK/@@download/ENCFF104FDK.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF552IZN bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF643CGH, ENCFF971UJG 927706943 ENCODE Processing Pipeline 0d40562b51b63873ac11b1a2d448d02c https://www.encodeproject.org/files/ENCFF552IZN/@@download/ENCFF552IZN.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF909EAW bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF643CGH 2303077943 ENCODE Processing Pipeline 963e57a9f540b7fa7126265661513446 https://www.encodeproject.org/files/ENCFF909EAW/@@download/ENCFF909EAW.bam GRCh38 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF188KZY bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF643CGH 1085042868 ENCODE Processing Pipeline c9e9a90f1a12e8a3d22f4ec96d050ae3 https://www.encodeproject.org/files/ENCFF188KZY/@@download/ENCFF188KZY.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF733CGU bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF643CGH 1380741053 ENCODE Processing Pipeline 1206ed8a6469f2a238483c21e49d992e https://www.encodeproject.org/files/ENCFF733CGU/@@download/ENCFF733CGU.bam GRCh38 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF559OOA bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF643CGH 5406770191 ENCODE Processing Pipeline 9c2b4d2eb32d314bb114135eadc5c981 https://www.encodeproject.org/files/ENCFF559OOA/@@download/ENCFF559OOA.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF083LQR bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF643CGH 6928381658 ENCODE Processing Pipeline af759fd50b2cd2d032bfe081138ebac2 https://www.encodeproject.org/files/ENCFF083LQR/@@download/ENCFF083LQR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF472MGT bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF643CGH 1304221358 ENCODE Processing Pipeline 1a57275751cb5a7d4dac63ae6dffab03 https://www.encodeproject.org/files/ENCFF472MGT/@@download/ENCFF472MGT.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF383ODW bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF643CGH 1325427381 ENCODE Processing Pipeline 546db6ced2a21c9bdb1ad352c973b5bc https://www.encodeproject.org/files/ENCFF383ODW/@@download/ENCFF383ODW.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF768DLZ bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF643CGH, ENCFF998XOV 3571417175 ENCODE Processing Pipeline c3231b5c8049ac300374dc13ab7df112 https://www.encodeproject.org/files/ENCFF768DLZ/@@download/ENCFF768DLZ.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF887EIG bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF643CGH, ENCFF703FVJ 4262652048 ENCODE Processing Pipeline cc7abe497aab54594c366b8a04834d62 https://www.encodeproject.org/files/ENCFF887EIG/@@download/ENCFF887EIG.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF809CJJ bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF643CGH 630868193 ENCODE Processing Pipeline 2643f3f2b03b991bb1185d629afafa2a https://www.encodeproject.org/files/ENCFF809CJJ/@@download/ENCFF809CJJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF843RIG bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF643CGH 1592670350 ENCODE Processing Pipeline 2f449e819f0b8b3846c61f12e64fb2aa https://www.encodeproject.org/files/ENCFF843RIG/@@download/ENCFF843RIG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF265TUU bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF643CGH 404849730 ENCODE Processing Pipeline e80c1df17bf1c7909f6e0f027a021610 https://www.encodeproject.org/files/ENCFF265TUU/@@download/ENCFF265TUU.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF925XUX bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF643CGH 483314291 ENCODE Processing Pipeline d5f48ea3eb918bdc3aebacab4b3553c5 https://www.encodeproject.org/files/ENCFF925XUX/@@download/ENCFF925XUX.bam GRCh38 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF523HQR bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF643CGH 973036120 ENCODE Processing Pipeline aa5f9318401f9d3bf50050f023288463 https://www.encodeproject.org/files/ENCFF523HQR/@@download/ENCFF523HQR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF604ODF bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF643CGH 1059410205 ENCODE Processing Pipeline b1f51fd4f28b3c826293da86ed014e69 https://www.encodeproject.org/files/ENCFF604ODF/@@download/ENCFF604ODF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF440RZX bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF643CGH 769502642 ENCODE Processing Pipeline a975a3e7b65a625b18fe5e83dc0ae753 https://www.encodeproject.org/files/ENCFF440RZX/@@download/ENCFF440RZX.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF058PCJ bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF643CGH 777820312 ENCODE Processing Pipeline 4a190df25ed187b2792077edc686a035 https://www.encodeproject.org/files/ENCFF058PCJ/@@download/ENCFF058PCJ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF354JLP bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF643CGH, ENCFF738HHZ 2376034844 ENCODE Processing Pipeline e506604a1c3527ecd1443a930080ccbb https://www.encodeproject.org/files/ENCFF354JLP/@@download/ENCFF354JLP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF146PDA bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF643CGH 3580329231 ENCODE Processing Pipeline 4b8b8f8304373998484236577e4382c5 https://www.encodeproject.org/files/ENCFF146PDA/@@download/ENCFF146PDA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF198WIX bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF643CGH, ENCFF891LJI 2989825714 ENCODE Processing Pipeline f30fd822fe3a623512fb0c495c5064f5 https://www.encodeproject.org/files/ENCFF198WIX/@@download/ENCFF198WIX.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF293PYL bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF643CGH 4563769834 ENCODE Processing Pipeline 68ca6779bd8fc0c253f2e6315bdb1e6f https://www.encodeproject.org/files/ENCFF293PYL/@@download/ENCFF293PYL.bam GRCh38 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF849XDW bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF643CGH 3802571693 ENCODE Processing Pipeline 10cf7632fdce01b546e16f789ca60328 https://www.encodeproject.org/files/ENCFF849XDW/@@download/ENCFF849XDW.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF226FBM bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF643CGH 3973114767 ENCODE Processing Pipeline 4f930d90696465436d533ebc20b9afb1 https://www.encodeproject.org/files/ENCFF226FBM/@@download/ENCFF226FBM.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF014OEB bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF643CGH 2999132986 ENCODE Processing Pipeline 3a82001e38638df43ffb585f5e625177 https://www.encodeproject.org/files/ENCFF014OEB/@@download/ENCFF014OEB.bam GRCh38 released borderline replicate concordance, low read depth ENCFF521YRB bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF643CGH, ENCFF724LAL 3090826032 ENCODE Processing Pipeline e0daeea4f99aebbcbd8f80f770b3bb9c https://www.encodeproject.org/files/ENCFF521YRB/@@download/ENCFF521YRB.bam GRCh38 released borderline replicate concordance, low read depth ENCFF892YBG bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF643CGH 518254704 ENCODE Processing Pipeline e8e32d6de18fa7d81dfafb828780c675 https://www.encodeproject.org/files/ENCFF892YBG/@@download/ENCFF892YBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF588EKB bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF643CGH 600799946 ENCODE Processing Pipeline e2233178b7eafeda1bf7c9e73d7847a5 https://www.encodeproject.org/files/ENCFF588EKB/@@download/ENCFF588EKB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF098FBI bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF643CGH 745621246 ENCODE Processing Pipeline 634c1e7eacce6a6242013a57e06d1571 https://www.encodeproject.org/files/ENCFF098FBI/@@download/ENCFF098FBI.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF720GSG bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF643CGH 824899062 ENCODE Processing Pipeline 36592d05149ae4dcf74f8c12200d00fb https://www.encodeproject.org/files/ENCFF720GSG/@@download/ENCFF720GSG.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF606IKC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF643CGH 477560048 ENCODE Processing Pipeline 76ca7d31bf442632fba9a4800ca2d196 https://www.encodeproject.org/files/ENCFF606IKC/@@download/ENCFF606IKC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF135UPU bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF643CGH 440830031 ENCODE Processing Pipeline 1d700cce82f88d32b7a60031b335f388 https://www.encodeproject.org/files/ENCFF135UPU/@@download/ENCFF135UPU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF114FFY bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF643CGH 618092597 ENCODE Processing Pipeline 2bd7ca27fb523e73bb9fdd398e4d3a3e https://www.encodeproject.org/files/ENCFF114FFY/@@download/ENCFF114FFY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF863AIR bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF643CGH 683030467 ENCODE Processing Pipeline 222a3c4c5b1136cde9817839a12c8a00 https://www.encodeproject.org/files/ENCFF863AIR/@@download/ENCFF863AIR.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF893PGF bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF643CGH 899220998 ENCODE Processing Pipeline 9f88985aa7cc4b73b561cc827078b829 https://www.encodeproject.org/files/ENCFF893PGF/@@download/ENCFF893PGF.bam GRCh38 released borderline replicate concordance ENCFF641VCR bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF643CGH 1535357296 ENCODE Processing Pipeline 23870d173b9512c98100475d5f80a89b https://www.encodeproject.org/files/ENCFF641VCR/@@download/ENCFF641VCR.bam GRCh38 released borderline replicate concordance ENCFF070WEO bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF643CGH 345537846 ENCODE Processing Pipeline 91415bb98d743d01a7703d6150e020c9 https://www.encodeproject.org/files/ENCFF070WEO/@@download/ENCFF070WEO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF496HGU bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF643CGH 597246951 ENCODE Processing Pipeline c1e2a6a98713c7a1defe5794ef4da899 https://www.encodeproject.org/files/ENCFF496HGU/@@download/ENCFF496HGU.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF186OVM bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF643CGH 908104773 ENCODE Processing Pipeline 550719ed8f57291e0e031cb313ea4f47 https://www.encodeproject.org/files/ENCFF186OVM/@@download/ENCFF186OVM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF799JNH bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF643CGH 1066076897 ENCODE Processing Pipeline 51bc99f45496633e1f6f9444ea045d2b https://www.encodeproject.org/files/ENCFF799JNH/@@download/ENCFF799JNH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF701ALM bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF643CGH 456069553 ENCODE Processing Pipeline 1fbcf2da365518e5404bf6873643163e https://www.encodeproject.org/files/ENCFF701ALM/@@download/ENCFF701ALM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF472QNP bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF643CGH 839982420 ENCODE Processing Pipeline f1c054aed2f796e364f1fbf4423f1132 https://www.encodeproject.org/files/ENCFF472QNP/@@download/ENCFF472QNP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF502VUK bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF643CGH, ENCFF945WVN 990487143 ENCODE Processing Pipeline 776ec5ffba48125a1209d1e5f9acd002 https://www.encodeproject.org/files/ENCFF502VUK/@@download/ENCFF502VUK.bam GRCh38 released low read depth ENCFF655OEX bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF643CGH, ENCFF837CJW 1196518197 ENCODE Processing Pipeline 28498adc3fb4a61e83d1f7ea479c57e8 https://www.encodeproject.org/files/ENCFF655OEX/@@download/ENCFF655OEX.bam GRCh38 released low read depth ENCFF818NGK bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF643CGH, ENCFF869ZLB 1646072958 ENCODE Processing Pipeline c5151786c4abcad69a3776e234ccfe7f https://www.encodeproject.org/files/ENCFF818NGK/@@download/ENCFF818NGK.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF971WZZ bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF643CGH, ENCFF807HTB 1570261199 ENCODE Processing Pipeline b5fd3cbb9b9753efaa4e7e477d240832 https://www.encodeproject.org/files/ENCFF971WZZ/@@download/ENCFF971WZZ.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF675JRZ bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF643CGH 555495049 ENCODE Processing Pipeline 3c5c3fbc62a7274181dd9ea7f5e4556e https://www.encodeproject.org/files/ENCFF675JRZ/@@download/ENCFF675JRZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388QKQ bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF643CGH 666666748 ENCODE Processing Pipeline 879eeedbe1fa29d8009924a16fe217db https://www.encodeproject.org/files/ENCFF388QKQ/@@download/ENCFF388QKQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF953PCA bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF643CGH 572730653 ENCODE Processing Pipeline cd368ed1e21594ced259d621f8b7f36c https://www.encodeproject.org/files/ENCFF953PCA/@@download/ENCFF953PCA.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF185DVY bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF643CGH 1118691745 ENCODE Processing Pipeline 64d8770e8ee64aba620cf0062ac2fd79 https://www.encodeproject.org/files/ENCFF185DVY/@@download/ENCFF185DVY.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF389LQB bam alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF272HAB, ENCFF643CGH, ENCFF763GOA 2904310922 ENCODE Processing Pipeline 28da295559a25774e19a2874522e274a https://www.encodeproject.org/files/ENCFF389LQB/@@download/ENCFF389LQB.bam GRCh38 released control low read depth, low read depth, antibody characterized with exemption ENCFF670UAP bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF643CGH, ENCFF875MPK 3939726636 ENCODE Processing Pipeline 625f92ce431878cd1bf7694b0f2402cb https://www.encodeproject.org/files/ENCFF670UAP/@@download/ENCFF670UAP.bam GRCh38 released mild to moderate bottlenecking ENCFF207EXR bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF643CGH 5223935954 ENCODE Processing Pipeline 24b438290bd832ab3977a1bae6df1c06 https://www.encodeproject.org/files/ENCFF207EXR/@@download/ENCFF207EXR.bam GRCh38 released mild to moderate bottlenecking ENCFF650PQH bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF643CGH, ENCFF806SEC 4506160587 ENCODE Processing Pipeline 894f93d0a6f545f174145e1766b3dd14 https://www.encodeproject.org/files/ENCFF650PQH/@@download/ENCFF650PQH.bam GRCh38 released borderline replicate concordance ENCFF061JUM bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF643CGH, ENCFF767SQO 3919022408 ENCODE Processing Pipeline a150ada08871a0387504b4ed67ba7a19 https://www.encodeproject.org/files/ENCFF061JUM/@@download/ENCFF061JUM.bam GRCh38 released borderline replicate concordance ENCFF933NBT bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF643CGH 550630382 ENCODE Processing Pipeline 1db499aa41445b0590fcfa64e58c6ac9 https://www.encodeproject.org/files/ENCFF933NBT/@@download/ENCFF933NBT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065BQF bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF643CGH 518838233 ENCODE Processing Pipeline 865b6c73759c980a0ccd761dab89d86c https://www.encodeproject.org/files/ENCFF065BQF/@@download/ENCFF065BQF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF728KUF bam alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF643CGH 3168187370 ENCODE Processing Pipeline 9bf742ec99b912f603081f795e7fb20a https://www.encodeproject.org/files/ENCFF728KUF/@@download/ENCFF728KUF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF924KUA bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF643CGH 312666675 ENCODE Processing Pipeline becee3cd8be1c51e6cddb6b4ff03b0f3 https://www.encodeproject.org/files/ENCFF924KUA/@@download/ENCFF924KUA.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF713PKK bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF643CGH 293552376 ENCODE Processing Pipeline 816e373f120f913efa545f9fc345e6c1 https://www.encodeproject.org/files/ENCFF713PKK/@@download/ENCFF713PKK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF190FDQ bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF643CGH 824269561 ENCODE Processing Pipeline e8ef345b7109829d43c88b66a0a33c41 https://www.encodeproject.org/files/ENCFF190FDQ/@@download/ENCFF190FDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF576DWG bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF643CGH 990733132 ENCODE Processing Pipeline 7ab5a58586b3e40368d1bd88de7b6f8d https://www.encodeproject.org/files/ENCFF576DWG/@@download/ENCFF576DWG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF218VQI bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF643CGH 708738292 ENCODE Processing Pipeline 8da8024ad683fcb8471d8c7b3ac08a42 https://www.encodeproject.org/files/ENCFF218VQI/@@download/ENCFF218VQI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF267AMC bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF643CGH 1151134101 ENCODE Processing Pipeline 5b2449b8aa1907d3fbb9db7d45db451a https://www.encodeproject.org/files/ENCFF267AMC/@@download/ENCFF267AMC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF940NMC bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF719VPQ, ENCFF816GRP 4273228587 ENCODE Processing Pipeline 291b2e96f72e1e062515e49e96af7428 https://www.encodeproject.org/files/ENCFF940NMC/@@download/ENCFF940NMC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF884FVP bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF643CGH 4885539175 ENCODE Processing Pipeline 97fdd8ae4c7df71962a1ee1ddbc1e9a3 https://www.encodeproject.org/files/ENCFF884FVP/@@download/ENCFF884FVP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF367WEI bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF643CGH 759475824 ENCODE Processing Pipeline f44667d369811a78aee4e4e0b19f3074 https://www.encodeproject.org/files/ENCFF367WEI/@@download/ENCFF367WEI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF866MOR bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF643CGH 910236732 ENCODE Processing Pipeline 11c3efb4243ce026ce7833ac8c81ba85 https://www.encodeproject.org/files/ENCFF866MOR/@@download/ENCFF866MOR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF147KAY bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF643CGH 723499008 ENCODE Processing Pipeline c1cfb3fb7b8e9ed5a1f9b32fef388a97 https://www.encodeproject.org/files/ENCFF147KAY/@@download/ENCFF147KAY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF261SIF bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF643CGH 720538536 ENCODE Processing Pipeline a9ad44e34d40b614b2d6e9e92ee4147c https://www.encodeproject.org/files/ENCFF261SIF/@@download/ENCFF261SIF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF545GUP bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF643CGH 545878098 ENCODE Processing Pipeline 8c1d12756d29d1933851b565fcc99ca3 https://www.encodeproject.org/files/ENCFF545GUP/@@download/ENCFF545GUP.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF425AZR bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF643CGH 1094214316 ENCODE Processing Pipeline cb5704d1a39191e48f1760f3d61938dc https://www.encodeproject.org/files/ENCFF425AZR/@@download/ENCFF425AZR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF646AXJ bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF643CGH, ENCFF959GCL 3862510346 ENCODE Processing Pipeline 981da79a37a77dc9fbc82cfb6ed5ceb1 https://www.encodeproject.org/files/ENCFF646AXJ/@@download/ENCFF646AXJ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF051NAE bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF643CGH, ENCFF948WTZ 4331719568 ENCODE Processing Pipeline a92d41a8a5ee398cdb3fe4ffe129917f https://www.encodeproject.org/files/ENCFF051NAE/@@download/ENCFF051NAE.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF393ULV bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF643CGH 271188402 ENCODE Processing Pipeline d93fb624f75bcc5853416ab85f82e8f2 https://www.encodeproject.org/files/ENCFF393ULV/@@download/ENCFF393ULV.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF736JCX bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF643CGH 270679105 ENCODE Processing Pipeline 13f7a6e1c34d0eb6dfba4244a650dfa8 https://www.encodeproject.org/files/ENCFF736JCX/@@download/ENCFF736JCX.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF438CHI bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF643CGH, ENCFF820AHB 3525059172 ENCODE Processing Pipeline 70a4c166d9b4c4325a1baa91644dcd85 https://www.encodeproject.org/files/ENCFF438CHI/@@download/ENCFF438CHI.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF408POL bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF643CGH, ENCFF952UEN 4200629403 ENCODE Processing Pipeline 2868d09f6cb3f00bf5b7a13409f225b7 https://www.encodeproject.org/files/ENCFF408POL/@@download/ENCFF408POL.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF946EJI bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF643CGH 737845357 ENCODE Processing Pipeline 6c3ecceebf28063b366fbacf6c88eef3 https://www.encodeproject.org/files/ENCFF946EJI/@@download/ENCFF946EJI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF278VUO bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF643CGH 814567834 ENCODE Processing Pipeline 512d82ea1fa3968f815f092e2aeff2d5 https://www.encodeproject.org/files/ENCFF278VUO/@@download/ENCFF278VUO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF015CKI bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF643CGH 371897305 ENCODE Processing Pipeline e25a252f06fdad18e5d4c7bbc6011f04 https://www.encodeproject.org/files/ENCFF015CKI/@@download/ENCFF015CKI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF148ZDV bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF643CGH 699288859 ENCODE Processing Pipeline 50f48e0d2be34b6b5244471754b9ce96 https://www.encodeproject.org/files/ENCFF148ZDV/@@download/ENCFF148ZDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF106SIO bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 100 ENCFF287QDK, ENCFF592NQI, ENCFF643CGH 5863802681 ENCODE Processing Pipeline 6439b5a92d62fc3d5ce8fc9e753404a4 https://www.encodeproject.org/files/ENCFF106SIO/@@download/ENCFF106SIO.bam GRCh38 released borderline replicate concordance ENCFF552YQY bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 100 ENCFF094RKI, ENCFF217CEA, ENCFF643CGH 5612110536 ENCODE Processing Pipeline 8848f8df495b2b43012ccd9b9536412d https://www.encodeproject.org/files/ENCFF552YQY/@@download/ENCFF552YQY.bam GRCh38 released borderline replicate concordance ENCFF100TXJ bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF643CGH 535555023 ENCODE Processing Pipeline 141fe35a8d73f4405db090f1133bf1a0 https://www.encodeproject.org/files/ENCFF100TXJ/@@download/ENCFF100TXJ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF521NVH bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF643CGH 1214649753 ENCODE Processing Pipeline a90a2898e51b63b2369e15fa7a751d0d https://www.encodeproject.org/files/ENCFF521NVH/@@download/ENCFF521NVH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF837ZOY bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF643CGH 4276094016 ENCODE Processing Pipeline 09672b856805eab1fddb9f5baddc2ed2 https://www.encodeproject.org/files/ENCFF837ZOY/@@download/ENCFF837ZOY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF183MSQ bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF643CGH 4749755609 ENCODE Processing Pipeline c6a04c0416fcf79a25922e0b7b2bfa1b https://www.encodeproject.org/files/ENCFF183MSQ/@@download/ENCFF183MSQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF428TXD bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF643CGH, ENCFF841LNZ 4528270720 ENCODE Processing Pipeline bad70e86b211cd2931ac2ab74c35c426 https://www.encodeproject.org/files/ENCFF428TXD/@@download/ENCFF428TXD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF262PFD bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF643CGH, ENCFF647EYX 5236053502 ENCODE Processing Pipeline 31d963432b190bd0441d2397fd9c872a https://www.encodeproject.org/files/ENCFF262PFD/@@download/ENCFF262PFD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF510TME bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF643CGH 4030349749 ENCODE Processing Pipeline fcbc29f9633469abeb505746bfd4cb77 https://www.encodeproject.org/files/ENCFF510TME/@@download/ENCFF510TME.bam GRCh38 released ENCFF266AHN bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF643CGH, ENCFF873VGP 4453357171 ENCODE Processing Pipeline d016fed12849bd1e6f4349b447304824 https://www.encodeproject.org/files/ENCFF266AHN/@@download/ENCFF266AHN.bam GRCh38 released ENCFF707ALH bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF062RFF, ENCFF643CGH 392093935 ENCODE Processing Pipeline 67ae1eef5ee07f808e629c3ddc189bec https://www.encodeproject.org/files/ENCFF707ALH/@@download/ENCFF707ALH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF954VXM bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF343ZNR, ENCFF643CGH 533043399 ENCODE Processing Pipeline bb11a8957e5dcc76ce1e8ef68eb0c96c https://www.encodeproject.org/files/ENCFF954VXM/@@download/ENCFF954VXM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF868CKN bam alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF643CGH 1076517565 ENCODE Processing Pipeline ca4f7176af5c1520d623355811d37b4b https://www.encodeproject.org/files/ENCFF868CKN/@@download/ENCFF868CKN.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF954FIU bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF643CGH, ENCFF846FJT 1704738337 ENCODE Processing Pipeline 75d531eab82fb3ff2060d909ad641be8 https://www.encodeproject.org/files/ENCFF954FIU/@@download/ENCFF954FIU.bam GRCh38 released ENCFF122XZP bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF643CGH 1196705660 ENCODE Processing Pipeline c736da90a86f8fabf13154f5f775bf4b https://www.encodeproject.org/files/ENCFF122XZP/@@download/ENCFF122XZP.bam GRCh38 released ENCFF155SKN bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF643CGH 451807776 ENCODE Processing Pipeline 048bf31c67896a3878bd6a026dafd85e https://www.encodeproject.org/files/ENCFF155SKN/@@download/ENCFF155SKN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF165OGY bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF643CGH 613016349 ENCODE Processing Pipeline 9d60e972496d61ba6f8ff6b0db3f5e50 https://www.encodeproject.org/files/ENCFF165OGY/@@download/ENCFF165OGY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF188QGH bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF643CGH 814517192 ENCODE Processing Pipeline b40b68187f57193df60a1fd61a8f8587 https://www.encodeproject.org/files/ENCFF188QGH/@@download/ENCFF188QGH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF719NDH bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF643CGH 1159188367 ENCODE Processing Pipeline e4bd21387bd2bf74181f8a6f8faefe40 https://www.encodeproject.org/files/ENCFF719NDH/@@download/ENCFF719NDH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF178EJY bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF643CGH 906593354 ENCODE Processing Pipeline d8aa561cc4b668a1147ae8572512de72 https://www.encodeproject.org/files/ENCFF178EJY/@@download/ENCFF178EJY.bam GRCh38 released low read length ENCFF057KBN bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF643CGH 1007216977 ENCODE Processing Pipeline c7707a38aa34856df9e1580183e4c5de https://www.encodeproject.org/files/ENCFF057KBN/@@download/ENCFF057KBN.bam GRCh38 released low read length ENCFF346XVM bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF643CGH 630793208 ENCODE Processing Pipeline 841d80ec0aed77f6bd9a3cefbea0b40f https://www.encodeproject.org/files/ENCFF346XVM/@@download/ENCFF346XVM.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF949TUZ bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTS, ENCFF643CGH 602846656 ENCODE Processing Pipeline 764816c8e7cbbe195f857117bb480d97 https://www.encodeproject.org/files/ENCFF949TUZ/@@download/ENCFF949TUZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF157HYJ bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF643CGH, ENCFF890WRL 3580303278 ENCODE Processing Pipeline c3bca805fbd05456c81a6019348e28f5 https://www.encodeproject.org/files/ENCFF157HYJ/@@download/ENCFF157HYJ.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF606LUD bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF643CGH 5109623043 ENCODE Processing Pipeline ccba4e172c8211289268fdd1acdb0b5a https://www.encodeproject.org/files/ENCFF606LUD/@@download/ENCFF606LUD.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF425QOU bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF643CGH 935070210 ENCODE Processing Pipeline 91b5115f4aceadd5681e7a15c9f92f2e https://www.encodeproject.org/files/ENCFF425QOU/@@download/ENCFF425QOU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF528IMZ bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF643CGH 594022152 ENCODE Processing Pipeline 7c1296653e9698d994139770a84679e6 https://www.encodeproject.org/files/ENCFF528IMZ/@@download/ENCFF528IMZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF552FJB bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF643CGH 426302936 ENCODE Processing Pipeline 0fb074a7fab2f2673c3e8f26c40beab8 https://www.encodeproject.org/files/ENCFF552FJB/@@download/ENCFF552FJB.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF388UNJ bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF643CGH 781943377 ENCODE Processing Pipeline d7b4161cdd7fd164f177600be72506fd https://www.encodeproject.org/files/ENCFF388UNJ/@@download/ENCFF388UNJ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF458TQM bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF643CGH, ENCFF991FZE 3777062046 ENCODE Processing Pipeline 370dc98fd633784340fadaebed8adf9b https://www.encodeproject.org/files/ENCFF458TQM/@@download/ENCFF458TQM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF186YMP bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF643CGH, ENCFF762MHK 4504820304 ENCODE Processing Pipeline 3ee524e59bdc860c8c41ec2660a12c91 https://www.encodeproject.org/files/ENCFF186YMP/@@download/ENCFF186YMP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF809AHN bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF643CGH 519166515 ENCODE Processing Pipeline 98440f69f5a45ac56b440a74dbe66bd2 https://www.encodeproject.org/files/ENCFF809AHN/@@download/ENCFF809AHN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF110LOM bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF643CGH 690533915 ENCODE Processing Pipeline e9927a8b1f828d7af4e50a9ae986a629 https://www.encodeproject.org/files/ENCFF110LOM/@@download/ENCFF110LOM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF257QQX bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF643CGH 641177525 ENCODE Processing Pipeline 35fb1455742e9cfd2af350a3888122be https://www.encodeproject.org/files/ENCFF257QQX/@@download/ENCFF257QQX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF925CYF bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF643CGH 812534292 ENCODE Processing Pipeline d1392d1c9d96f6b0116765e7e32aad96 https://www.encodeproject.org/files/ENCFF925CYF/@@download/ENCFF925CYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF409PPI bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 100 ENCFF317PWU, ENCFF643CGH, ENCFF764PRL 5210233528 ENCODE Processing Pipeline eb4de137aba46d7207f11e9da0e17085 https://www.encodeproject.org/files/ENCFF409PPI/@@download/ENCFF409PPI.bam GRCh38 released ENCFF503QVH bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 100 ENCFF481RYD, ENCFF543WLX, ENCFF643CGH 4826616388 ENCODE Processing Pipeline 4c76aeb82c52929e900106df687da622 https://www.encodeproject.org/files/ENCFF503QVH/@@download/ENCFF503QVH.bam GRCh38 released ENCFF576RFC bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF643CGH, ENCFF900RHA, ENCFF993KAU 2277576438 ENCODE Processing Pipeline 935d1de59d221c0158abc93053616fa9 https://www.encodeproject.org/files/ENCFF576RFC/@@download/ENCFF576RFC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF079ZYM bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF643CGH, ENCFF742VZZ 2337123030 ENCODE Processing Pipeline 43db10206a46d5da5b6edda021d2daa1 https://www.encodeproject.org/files/ENCFF079ZYM/@@download/ENCFF079ZYM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF255AHN bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF643CGH 446779071 ENCODE Processing Pipeline 174e3ab95f6860f07f94dc3422987010 https://www.encodeproject.org/files/ENCFF255AHN/@@download/ENCFF255AHN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF643KYI bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF643CGH 799550393 ENCODE Processing Pipeline f62530f2e34459085b4798b8ed2041da https://www.encodeproject.org/files/ENCFF643KYI/@@download/ENCFF643KYI.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF602FGJ bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF692XUJ, ENCFF962YIK 5680891486 ENCODE Processing Pipeline dd88f381da6ee0812f4319428cebf22b https://www.encodeproject.org/files/ENCFF602FGJ/@@download/ENCFF602FGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF871CIH bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF643CGH 6012422075 ENCODE Processing Pipeline de59dac4082e1673d6691fc4ca53b310 https://www.encodeproject.org/files/ENCFF871CIH/@@download/ENCFF871CIH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF686ZIH bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF643CGH 5782004581 ENCODE Processing Pipeline 7df3f17d547c04c501f51f9a818a12a0 https://www.encodeproject.org/files/ENCFF686ZIH/@@download/ENCFF686ZIH.bam GRCh38 released ENCFF786MHJ bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF643CGH, ENCFF931UCZ, ENCFF965QBT 6972290190 ENCODE Processing Pipeline cb4f3e8695e9b325732b116d7af049a6 https://www.encodeproject.org/files/ENCFF786MHJ/@@download/ENCFF786MHJ.bam GRCh38 released ENCFF112DFJ bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF643CGH 945456611 ENCODE Processing Pipeline 61979b286d4a7e924d1ec25d2e8da580 https://www.encodeproject.org/files/ENCFF112DFJ/@@download/ENCFF112DFJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF623TAD bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF643CGH 663638354 ENCODE Processing Pipeline 86841906a22861ba7da51f783a450c55 https://www.encodeproject.org/files/ENCFF623TAD/@@download/ENCFF623TAD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF471WJE bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF643CGH 718258212 ENCODE Processing Pipeline 754b298daf2a1208255b1891e4f9d3fc https://www.encodeproject.org/files/ENCFF471WJE/@@download/ENCFF471WJE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259GVS bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF643CGH 1089041359 ENCODE Processing Pipeline 35a2ccf5115b69e9c2147d877df8591d https://www.encodeproject.org/files/ENCFF259GVS/@@download/ENCFF259GVS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF639CLN bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF643CGH, ENCFF910KPS 3045973174 ENCODE Processing Pipeline 04ed141468c9d3cf4a33149f401ec68c https://www.encodeproject.org/files/ENCFF639CLN/@@download/ENCFF639CLN.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF682OCC bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF643CGH 6068733754 ENCODE Processing Pipeline 4e1aecd5e88a1af79218478329cceb37 https://www.encodeproject.org/files/ENCFF682OCC/@@download/ENCFF682OCC.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF144SKI bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF643CGH 744137203 ENCODE Processing Pipeline 94acc763b0b1c3f618bf0faa6e5eac22 https://www.encodeproject.org/files/ENCFF144SKI/@@download/ENCFF144SKI.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF128DIV bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF643CGH 831806643 ENCODE Processing Pipeline e029d9e7a18aa8f45bd43b17471e83f1 https://www.encodeproject.org/files/ENCFF128DIV/@@download/ENCFF128DIV.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF526BRU bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF643CGH, ENCFF923WIN 2691266524 ENCODE Processing Pipeline f67fb2afed31ddae48aeff9185caa437 https://www.encodeproject.org/files/ENCFF526BRU/@@download/ENCFF526BRU.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF574UFQ bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF728GHG, ENCFF909GZY 2828137760 ENCODE Processing Pipeline ee83ec9ac50e927ca28a0d7d0a80ba2d https://www.encodeproject.org/files/ENCFF574UFQ/@@download/ENCFF574UFQ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF530BMT bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF643CGH 625614143 ENCODE Processing Pipeline b3fd1b19d2d5259567d142f2069258ae https://www.encodeproject.org/files/ENCFF530BMT/@@download/ENCFF530BMT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF717JQH bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF643CGH 750172564 ENCODE Processing Pipeline dda92803c972aa54e5bccb5b56a6d3a7 https://www.encodeproject.org/files/ENCFF717JQH/@@download/ENCFF717JQH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF920UGA bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF643CGH 216585698 ENCODE Processing Pipeline 1a60af2b8ce5ff29c9a1df6a3290dd0c https://www.encodeproject.org/files/ENCFF920UGA/@@download/ENCFF920UGA.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF347TBE bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF643CGH 372351724 ENCODE Processing Pipeline 941eb79a74e0ee7914c5f25d208e2cdf https://www.encodeproject.org/files/ENCFF347TBE/@@download/ENCFF347TBE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF755GJA bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF643CGH 424117995 ENCODE Processing Pipeline 5b1cab4882d1fa625aecd5ed8debac49 https://www.encodeproject.org/files/ENCFF755GJA/@@download/ENCFF755GJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF527JSO bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF643CGH 553184307 ENCODE Processing Pipeline e641cda16e29bc50c3c4a6fe19e3ee53 https://www.encodeproject.org/files/ENCFF527JSO/@@download/ENCFF527JSO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF482NBS bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF643CGH, ENCFF916RIL 3814770458 ENCODE Processing Pipeline 01826994f247ecb0d3885e623d1a90b3 https://www.encodeproject.org/files/ENCFF482NBS/@@download/ENCFF482NBS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF930CAN bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF643CGH, ENCFF816PKD 4805566200 ENCODE Processing Pipeline 5262450eb5494f0479bd863ed55d23c7 https://www.encodeproject.org/files/ENCFF930CAN/@@download/ENCFF930CAN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF347NTF bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF643CGH, ENCFF937ADB 4606239979 ENCODE Processing Pipeline 5d062dd05ba3264bbb642548aee027b3 https://www.encodeproject.org/files/ENCFF347NTF/@@download/ENCFF347NTF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF939QHA bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF643CGH, ENCFF784JLB 4820850387 ENCODE Processing Pipeline ae9ec2b7300ed4125b3a56f3efca3f63 https://www.encodeproject.org/files/ENCFF939QHA/@@download/ENCFF939QHA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF349STY bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF643CGH 4931662282 ENCODE Processing Pipeline 3e7191509194cda3b56613446d4c74c0 https://www.encodeproject.org/files/ENCFF349STY/@@download/ENCFF349STY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF479RUX bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF643CGH, ENCFF750PYC 5094797373 ENCODE Processing Pipeline 87c37098872cece82027c2d75c8ae2af https://www.encodeproject.org/files/ENCFF479RUX/@@download/ENCFF479RUX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF052ISO bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF643CGH, ENCFF726VMX 5106156887 ENCODE Processing Pipeline caa9e04dbd845c3ba8d531dc1951e99b https://www.encodeproject.org/files/ENCFF052ISO/@@download/ENCFF052ISO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF464PRX bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF643CGH, ENCFF952MEL 6221838621 ENCODE Processing Pipeline 8215fbc0bf9db7c07d6f808a740d5ef7 https://www.encodeproject.org/files/ENCFF464PRX/@@download/ENCFF464PRX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF592PEU bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF643CGH 4947425448 ENCODE Processing Pipeline 0dee04e561dbc8032f3d64fcbcdda448 https://www.encodeproject.org/files/ENCFF592PEU/@@download/ENCFF592PEU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF773VPD bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF643CGH 6091195589 ENCODE Processing Pipeline 9925604f583dc2846f2031161e9842e3 https://www.encodeproject.org/files/ENCFF773VPD/@@download/ENCFF773VPD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF416WNF bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF643CGH 1981001828 ENCODE Processing Pipeline 65432742cbc2b35de31a9289e0e75062 https://www.encodeproject.org/files/ENCFF416WNF/@@download/ENCFF416WNF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF449TTJ bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF643CGH 2671189210 ENCODE Processing Pipeline e07afc81f1988db461a5636b888dcad5 https://www.encodeproject.org/files/ENCFF449TTJ/@@download/ENCFF449TTJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF195HUS bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF643CGH 456227150 ENCODE Processing Pipeline a0be0ff88a6151b356d038eb53c00b8e https://www.encodeproject.org/files/ENCFF195HUS/@@download/ENCFF195HUS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF291BBG bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF643CGH 506369414 ENCODE Processing Pipeline 76daa1805a91587d9a1b8e6404b60269 https://www.encodeproject.org/files/ENCFF291BBG/@@download/ENCFF291BBG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF507UWE bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF643CGH 4993270501 ENCODE Processing Pipeline 91047f8a698cc7544fc314403efc73f5 https://www.encodeproject.org/files/ENCFF507UWE/@@download/ENCFF507UWE.bam GRCh38 released mild to moderate bottlenecking ENCFF984BZB bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF643CGH 5585894044 ENCODE Processing Pipeline 79bff9af909393513c8fa8846a8d4bad https://www.encodeproject.org/files/ENCFF984BZB/@@download/ENCFF984BZB.bam GRCh38 released mild to moderate bottlenecking ENCFF149WGG bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF643CGH 3003618186 ENCODE Processing Pipeline 5fca0478689e3b882811aa2fa76daefe https://www.encodeproject.org/files/ENCFF149WGG/@@download/ENCFF149WGG.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF315DCZ bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF643CGH 4712714583 ENCODE Processing Pipeline 8c4ba40cc470e3e7de5306acef6522f0 https://www.encodeproject.org/files/ENCFF315DCZ/@@download/ENCFF315DCZ.bam GRCh38 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF936SHM bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF643CGH 500423052 ENCODE Processing Pipeline db86d88e1015ce6694ff52cd813d1e80 https://www.encodeproject.org/files/ENCFF936SHM/@@download/ENCFF936SHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF481EDX bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF643CGH 718732177 ENCODE Processing Pipeline cab79b21dc677de1e37a5804ebe94630 https://www.encodeproject.org/files/ENCFF481EDX/@@download/ENCFF481EDX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF057NJA bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF643CGH, ENCFF862OIP 4484750007 ENCODE Processing Pipeline 3f7458a53ecca618e6cbbce95f9b615c https://www.encodeproject.org/files/ENCFF057NJA/@@download/ENCFF057NJA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF078YAS bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF643CGH 6271106899 ENCODE Processing Pipeline 744586b5d8e2fb0ddb0f10527a021dd1 https://www.encodeproject.org/files/ENCFF078YAS/@@download/ENCFF078YAS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF742BWH bam alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF862PPU, ENCFF944QTE 1784611656 ENCODE Processing Pipeline 4113fc0777957dfc2d7d7fbb4e421744 https://www.encodeproject.org/files/ENCFF742BWH/@@download/ENCFF742BWH.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF607DUB bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF643CGH 5160850416 ENCODE Processing Pipeline e18d122a1cb8bb25732526497c35e661 https://www.encodeproject.org/files/ENCFF607DUB/@@download/ENCFF607DUB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF230WSL bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF643CGH 6011536440 ENCODE Processing Pipeline 4e4e9f9c4a79c4874ca7f4a5d67c2a95 https://www.encodeproject.org/files/ENCFF230WSL/@@download/ENCFF230WSL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF823KOR bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF643CGH, ENCFF724ABX 4654674505 ENCODE Processing Pipeline e12f31085666dbeb260da3f5e934131c https://www.encodeproject.org/files/ENCFF823KOR/@@download/ENCFF823KOR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF347HLU bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF643CGH 6331246358 ENCODE Processing Pipeline 9dd937c27cc0eb5007d329e13934e406 https://www.encodeproject.org/files/ENCFF347HLU/@@download/ENCFF347HLU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF970NDQ bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF643CGH, ENCFF920JRG 4448448622 ENCODE Processing Pipeline 8af23b069ead59b8c935d40c0507fa73 https://www.encodeproject.org/files/ENCFF970NDQ/@@download/ENCFF970NDQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF423OJU bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF643CGH, ENCFF701LQT, ENCFF956FQW 4702222000 ENCODE Processing Pipeline 5c7a96aff924b90ec0fdaed1cc33436b https://www.encodeproject.org/files/ENCFF423OJU/@@download/ENCFF423OJU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF319SAQ bam alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF778LRO, ENCFF858IOX 3501238128 ENCODE Processing Pipeline ebe198bf85973b9d9418b48d64b27ee6 https://www.encodeproject.org/files/ENCFF319SAQ/@@download/ENCFF319SAQ.bam GRCh38 released antibody characterized with exemption ENCFF687AXX bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF643CGH, ENCFF859WEK 11966998215 ENCODE Processing Pipeline e464eaef9f2e65b0d496defa78734e05 https://www.encodeproject.org/files/ENCFF687AXX/@@download/ENCFF687AXX.bam GRCh38 released experiment not submitted to GEO ENCFF988SHG bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF643CGH, ENCFF901UJY, ENCFF959PBM 4729883344 ENCODE Processing Pipeline df72fce926dc3de81527f795cc3ad2e4 https://www.encodeproject.org/files/ENCFF988SHG/@@download/ENCFF988SHG.bam GRCh38 released experiment not submitted to GEO ENCFF282GMA bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF643CGH 3098965398 ENCODE Processing Pipeline f19cee6b5ddd4826c492163770be1328 https://www.encodeproject.org/files/ENCFF282GMA/@@download/ENCFF282GMA.bam GRCh38 released mild to moderate bottlenecking ENCFF320FKI bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF643CGH 3911940769 ENCODE Processing Pipeline 3e71393b3e373dc338c70fe9223b9a0e https://www.encodeproject.org/files/ENCFF320FKI/@@download/ENCFF320FKI.bam GRCh38 released mild to moderate bottlenecking ENCFF775RIR bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF643CGH, ENCFF837EIC 5200941912 ENCODE Processing Pipeline 75a800f81d044c8fa96e8daa92cf46ef https://www.encodeproject.org/files/ENCFF775RIR/@@download/ENCFF775RIR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF126KYT bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF643CGH, ENCFF796PBA 4575805888 ENCODE Processing Pipeline e1475c9297a32ad6be64a4550d419962 https://www.encodeproject.org/files/ENCFF126KYT/@@download/ENCFF126KYT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF659TYR bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF643CGH 6313259800 ENCODE Processing Pipeline f1e0b85ce56494328f871c6027b36bc8 https://www.encodeproject.org/files/ENCFF659TYR/@@download/ENCFF659TYR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF745TSL bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF643CGH, ENCFF707AMG 8422512969 ENCODE Processing Pipeline 4b2f746446b1bd2c195fff463a69243a https://www.encodeproject.org/files/ENCFF745TSL/@@download/ENCFF745TSL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF343NMF bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF643CGH, ENCFF927JLA 4031919016 ENCODE Processing Pipeline 900380de55db8878b1186d97bd648d05 https://www.encodeproject.org/files/ENCFF343NMF/@@download/ENCFF343NMF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF623VBL bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF643CGH 4492553718 ENCODE Processing Pipeline 59bf65a80e0ebf4114cb7b38a621e809 https://www.encodeproject.org/files/ENCFF623VBL/@@download/ENCFF623VBL.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF476CCE bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF643CGH 5269255355 ENCODE Processing Pipeline 54031b14328d86ead44a970b65ee52ae https://www.encodeproject.org/files/ENCFF476CCE/@@download/ENCFF476CCE.bam GRCh38 released borderline replicate concordance ENCFF949KJV bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF643CGH, ENCFF906JOB, ENCFF992YHZ 6634078591 ENCODE Processing Pipeline 3e0d1b70a5600216a17aec0549020cdd https://www.encodeproject.org/files/ENCFF949KJV/@@download/ENCFF949KJV.bam GRCh38 released borderline replicate concordance ENCFF581DEV bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF643CGH, ENCFF763MGN 4539409249 ENCODE Processing Pipeline 3de13b0ee8abcf77c2cd5e66e50c073d https://www.encodeproject.org/files/ENCFF581DEV/@@download/ENCFF581DEV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF899LDZ bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF643CGH, ENCFF904BBB 4697019833 ENCODE Processing Pipeline f93e502c3523ae7cf52ad6954717e213 https://www.encodeproject.org/files/ENCFF899LDZ/@@download/ENCFF899LDZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF807TIN bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF643CGH 877151848 ENCODE Processing Pipeline cd51bd94ea6dba690a25d8be2bed225b https://www.encodeproject.org/files/ENCFF807TIN/@@download/ENCFF807TIN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF535OVY bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF643CGH 888504025 ENCODE Processing Pipeline 7328c42ef5e90a27e8ff216a83530c9b https://www.encodeproject.org/files/ENCFF535OVY/@@download/ENCFF535OVY.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF377YBU bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF643CGH 582156435 ENCODE Processing Pipeline 4c2e04b243e19e38054eed323595b6a1 https://www.encodeproject.org/files/ENCFF377YBU/@@download/ENCFF377YBU.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF751EVN bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF643CGH 500794078 ENCODE Processing Pipeline d491b26000e2255e479a14c4f954dcf9 https://www.encodeproject.org/files/ENCFF751EVN/@@download/ENCFF751EVN.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF427CQP bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF643CGH, ENCFF661STW 4154454376 ENCODE Processing Pipeline 4ff93ec818dabe34ad0a65d6632ff56a https://www.encodeproject.org/files/ENCFF427CQP/@@download/ENCFF427CQP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF531RDZ bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF643CGH 4674488662 ENCODE Processing Pipeline 47d2ee4068cd054db83e23af655d00bc https://www.encodeproject.org/files/ENCFF531RDZ/@@download/ENCFF531RDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF437IVZ bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF643CGH, ENCFF669OSV, ENCFF706KLP 3897741970 ENCODE Processing Pipeline 849389fdec7085163b49536cbe36f588 https://www.encodeproject.org/files/ENCFF437IVZ/@@download/ENCFF437IVZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF119ZDI bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF643CGH 4347711953 ENCODE Processing Pipeline 78fe49ad8bf307e258ca20e4dcacef2e https://www.encodeproject.org/files/ENCFF119ZDI/@@download/ENCFF119ZDI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF387ZDQ bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF643CGH 743175228 ENCODE Processing Pipeline ba837b53de4a5d5b8b67cd3b9ec013ba https://www.encodeproject.org/files/ENCFF387ZDQ/@@download/ENCFF387ZDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF572XLQ bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF643CGH 2418902010 ENCODE Processing Pipeline 9281c56310cdf7147265b3ff655a3b81 https://www.encodeproject.org/files/ENCFF572XLQ/@@download/ENCFF572XLQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF071ONN bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF643CGH, ENCFF909TZW, ENCFF999MLQ 5263294015 ENCODE Processing Pipeline 02fa0ec802f1d94f28bee6cf6f905206 https://www.encodeproject.org/files/ENCFF071ONN/@@download/ENCFF071ONN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF507AHN bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF643CGH, ENCFF784TRG 5134646205 ENCODE Processing Pipeline e463badb4e374c797e5c53fc5d71a667 https://www.encodeproject.org/files/ENCFF507AHN/@@download/ENCFF507AHN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF144OSY bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF653QNP, ENCFF955QVT 6078285290 ENCODE Processing Pipeline 2944a5d04c170fa1d27245315e42c47f https://www.encodeproject.org/files/ENCFF144OSY/@@download/ENCFF144OSY.bam GRCh38 released ENCFF065ZXS bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF643CGH, ENCFF895TXD 6375293942 ENCODE Processing Pipeline 9cb8c57c3aed971f6ab62478fdf14df3 https://www.encodeproject.org/files/ENCFF065ZXS/@@download/ENCFF065ZXS.bam GRCh38 released ENCFF770VVI bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002ATD, ENCFF643CGH 642170265 ENCODE Processing Pipeline 61539f5e02a2bdc472a33166a60cd46b https://www.encodeproject.org/files/ENCFF770VVI/@@download/ENCFF770VVI.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF414QJE bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002BBY, ENCFF643CGH 1304059310 ENCODE Processing Pipeline 82893974990e37675428a58938f03426 https://www.encodeproject.org/files/ENCFF414QJE/@@download/ENCFF414QJE.bam GRCh38 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF723QZO bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF643CGH 780164998 ENCODE Processing Pipeline 90050b34443bd8d8af45808a1d169b2a https://www.encodeproject.org/files/ENCFF723QZO/@@download/ENCFF723QZO.bam GRCh38 released low read length, low read depth ENCFF019PLG bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF643CGH 949517486 ENCODE Processing Pipeline fe88491db2639d100a87088ad62b7e86 https://www.encodeproject.org/files/ENCFF019PLG/@@download/ENCFF019PLG.bam GRCh38 released low read length, low read depth ENCFF323OVV bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF643CGH, ENCFF953OIR 1781653811 ENCODE Processing Pipeline ee373bbb6646a852e170c5966ad8e761 https://www.encodeproject.org/files/ENCFF323OVV/@@download/ENCFF323OVV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF050VHP bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF643CGH 2013224462 ENCODE Processing Pipeline 5b3de0ed22cfced6f3bf837f0c7875f3 https://www.encodeproject.org/files/ENCFF050VHP/@@download/ENCFF050VHP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF941ENT bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF643CGH, ENCFF838ILR 4962774636 ENCODE Processing Pipeline 821dbf31b10baafad65e246886b3bfe7 https://www.encodeproject.org/files/ENCFF941ENT/@@download/ENCFF941ENT.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF495HQQ bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF643CGH 5121155187 ENCODE Processing Pipeline b5646c9d08191650a76df21a2b280d1d https://www.encodeproject.org/files/ENCFF495HQQ/@@download/ENCFF495HQQ.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF065JMG bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF643CGH, ENCFF922GDY 967565699 ENCODE Processing Pipeline 943522c8df5fdb97d986b1c547641470 https://www.encodeproject.org/files/ENCFF065JMG/@@download/ENCFF065JMG.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF991ZBF bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF643CGH, ENCFF758IZH 1176504981 ENCODE Processing Pipeline 80f884ca171b1341913a34e43a603ee8 https://www.encodeproject.org/files/ENCFF991ZBF/@@download/ENCFF991ZBF.bam GRCh38 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF645GMV bam alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF643CGH 3085653564 ENCODE Processing Pipeline 0f9bcbb59dd3e14219d32c344cb5495e https://www.encodeproject.org/files/ENCFF645GMV/@@download/ENCFF645GMV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF341YTC bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF643CGH 443728558 ENCODE Processing Pipeline e14ff5d5f936321c348dc2871a7fa12b https://www.encodeproject.org/files/ENCFF341YTC/@@download/ENCFF341YTC.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713SUL bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF643CGH 608228873 ENCODE Processing Pipeline fcc15f81d8f368767b7ae2f1fe731313 https://www.encodeproject.org/files/ENCFF713SUL/@@download/ENCFF713SUL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF081WNV bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF643CGH, ENCFF812RLF 2293903468 ENCODE Processing Pipeline e9ea0f6bad3bc8e7e248486a5bfdb3cd https://www.encodeproject.org/files/ENCFF081WNV/@@download/ENCFF081WNV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF504YJU bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF643CGH, ENCFF803PGO 5185616138 ENCODE Processing Pipeline 9d272b76fc7aa4d5f4bd200c500eb61f https://www.encodeproject.org/files/ENCFF504YJU/@@download/ENCFF504YJU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF011HOS bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF643CGH 6971221190 ENCODE Processing Pipeline b4227754e5841cb3fab078fc2f2e7a27 https://www.encodeproject.org/files/ENCFF011HOS/@@download/ENCFF011HOS.bam GRCh38 released experiment not submitted to GEO ENCFF320SCI bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF643CGH 5360941704 ENCODE Processing Pipeline 038fb6250f7b9ddd4cb16f37e4e5571c https://www.encodeproject.org/files/ENCFF320SCI/@@download/ENCFF320SCI.bam GRCh38 released experiment not submitted to GEO ENCFF037NOK bam alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF643CGH, ENCFF837GHV 2719837663 ENCODE Processing Pipeline 7bb1490a224c975bb04a459de7a9f629 https://www.encodeproject.org/files/ENCFF037NOK/@@download/ENCFF037NOK.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF980QHF bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF643CGH 305073054 ENCODE Processing Pipeline 99209ff0aab47d7ff756414f738b30e9 https://www.encodeproject.org/files/ENCFF980QHF/@@download/ENCFF980QHF.bam GRCh38 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF025LBM bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF643CGH, ENCFF668LKZ 4431351654 ENCODE Processing Pipeline d8609da7e5e88655b59d9aae27a53c11 https://www.encodeproject.org/files/ENCFF025LBM/@@download/ENCFF025LBM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF816BLB bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF643CGH, ENCFF753KIN 6149371875 ENCODE Processing Pipeline 504249c277c87a019efb548f24ab058a https://www.encodeproject.org/files/ENCFF816BLB/@@download/ENCFF816BLB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF341JFD bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF643CGH, ENCFF924MPJ 5604075096 ENCODE Processing Pipeline 1d4f542462541fc5056c7e48ed338f38 https://www.encodeproject.org/files/ENCFF341JFD/@@download/ENCFF341JFD.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF943EOC bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF643CGH, ENCFF860XRV 6343890367 ENCODE Processing Pipeline 273d419afdce690f61a41d41bbb60356 https://www.encodeproject.org/files/ENCFF943EOC/@@download/ENCFF943EOC.bam GRCh38 released file validation error, borderline replicate concordance mismatched file status ENCFF640KGV bam alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF643CGH 2830596261 ENCODE Processing Pipeline 62145edeb89da06bb703d12a0693c160 https://www.encodeproject.org/files/ENCFF640KGV/@@download/ENCFF640KGV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF013MXK bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF643CGH, ENCFF687HHR 2987344134 ENCODE Processing Pipeline 43c907f47ea5ad1ba6f8d22ef238320c https://www.encodeproject.org/files/ENCFF013MXK/@@download/ENCFF013MXK.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF752FIR bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF643CGH 3772020005 ENCODE Processing Pipeline a6c5a1344915b1e6119c0cca0f6a8f5d https://www.encodeproject.org/files/ENCFF752FIR/@@download/ENCFF752FIR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF722XIO bam alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF643CGH, ENCFF837IQA, ENCFF982FBQ 5732888080 ENCODE Processing Pipeline 7948c224d2cb87780be43d581454fd6a https://www.encodeproject.org/files/ENCFF722XIO/@@download/ENCFF722XIO.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF215EOS bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF643CGH 757371324 ENCODE Processing Pipeline 80d3b346dae6fe36b7e3fb2a2378f620 https://www.encodeproject.org/files/ENCFF215EOS/@@download/ENCFF215EOS.bam GRCh38 released low read length, low read depth ENCFF242BHJ bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF643CGH 720254621 ENCODE Processing Pipeline 4e6bab85ac2de194c7129fcd99d92580 https://www.encodeproject.org/files/ENCFF242BHJ/@@download/ENCFF242BHJ.bam GRCh38 released low read length, low read depth ENCFF479TYA bam alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF643CGH 3715037891 ENCODE Processing Pipeline 4c50417cb58059097f7c297a3bcfeebc https://www.encodeproject.org/files/ENCFF479TYA/@@download/ENCFF479TYA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF827XZB bam alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF643CGH, ENCFF724RNY, ENCFF922ULN 3355818484 ENCODE Processing Pipeline 158499ce301f758f3fbc00e43d6ca885 https://www.encodeproject.org/files/ENCFF827XZB/@@download/ENCFF827XZB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF646MZX bam alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF643CGH, ENCFF943KNW 2900266140 ENCODE Processing Pipeline 59b8989d5589882c65f0234272cca32a https://www.encodeproject.org/files/ENCFF646MZX/@@download/ENCFF646MZX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF531RJB bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF643CGH 533040960 ENCODE Processing Pipeline 2678b8b786eda81f8fbf29639c5520d8 https://www.encodeproject.org/files/ENCFF531RJB/@@download/ENCFF531RJB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF243ARI bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF643CGH 544269811 ENCODE Processing Pipeline 223b5d2fd04a216d1fb715d1b5b1d127 https://www.encodeproject.org/files/ENCFF243ARI/@@download/ENCFF243ARI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF014BMO bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF643CGH 597271965 ENCODE Processing Pipeline a6a7167b5352712f052efe8dfac9638d https://www.encodeproject.org/files/ENCFF014BMO/@@download/ENCFF014BMO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF098DSP bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF643CGH 899548469 ENCODE Processing Pipeline 584ef1d989914130f8600bee6a7f1d64 https://www.encodeproject.org/files/ENCFF098DSP/@@download/ENCFF098DSP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF058LBG bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF643CGH, ENCFF785LEU 4447741649 ENCODE Processing Pipeline b52b10f7d2e2087e1ebd86706ec6eab8 https://www.encodeproject.org/files/ENCFF058LBG/@@download/ENCFF058LBG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF016ALA bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF643CGH, ENCFF852WDA 4596564000 ENCODE Processing Pipeline bb083ee26b8709537544d3bfff3cdeff https://www.encodeproject.org/files/ENCFF016ALA/@@download/ENCFF016ALA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF994WIY bam alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF643CGH 1546823990 ENCODE Processing Pipeline 4db6d5b260784a1731e2fd591a420286 https://www.encodeproject.org/files/ENCFF994WIY/@@download/ENCFF994WIY.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF069SYK bam alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF643CGH 4015897178 ENCODE Processing Pipeline 9e1db9dd319f3c9e589e83ec5b9fda9c https://www.encodeproject.org/files/ENCFF069SYK/@@download/ENCFF069SYK.bam GRCh38 released antibody characterized with exemption ENCFF401VIW bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF643CGH 4456733356 ENCODE Processing Pipeline 674dd408329c244913f7c41c23b273b9 https://www.encodeproject.org/files/ENCFF401VIW/@@download/ENCFF401VIW.bam GRCh38 released ENCFF369JAU bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF643CGH, ENCFF651TLL 4081759911 ENCODE Processing Pipeline 2614df501e4e51bfe1bf372d5cb74a04 https://www.encodeproject.org/files/ENCFF369JAU/@@download/ENCFF369JAU.bam GRCh38 released ENCFF638HCT bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF643CGH 992394488 ENCODE Processing Pipeline 947144206289900286f330a2b38f7ae6 https://www.encodeproject.org/files/ENCFF638HCT/@@download/ENCFF638HCT.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF883YOY bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF643CGH 1506467409 ENCODE Processing Pipeline d0fb953c04103eff064da516a1fe4515 https://www.encodeproject.org/files/ENCFF883YOY/@@download/ENCFF883YOY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF902XGC bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF643CGH, ENCFF887YKT 4256979678 ENCODE Processing Pipeline f67747517d6f42a2c7684911d11fec8c https://www.encodeproject.org/files/ENCFF902XGC/@@download/ENCFF902XGC.bam GRCh38 released ENCFF141RIS bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF643CGH 4770654583 ENCODE Processing Pipeline 663dd105ef75f6e200e6322456a8fd50 https://www.encodeproject.org/files/ENCFF141RIS/@@download/ENCFF141RIS.bam GRCh38 released ENCFF552ZFG bam alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF643CGH, ENCFF757JXI 8571508129 ENCODE Processing Pipeline 33d82502d12a9134fffb9878d8a0f250 https://www.encodeproject.org/files/ENCFF552ZFG/@@download/ENCFF552ZFG.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF654KYF bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF643CGH 819184321 ENCODE Processing Pipeline 98e0be7624ef79c5f60a4fba471bee20 https://www.encodeproject.org/files/ENCFF654KYF/@@download/ENCFF654KYF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF824XFI bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF643CGH 775025412 ENCODE Processing Pipeline e0cdbc48a5285fcf7866f8c9f04f786d https://www.encodeproject.org/files/ENCFF824XFI/@@download/ENCFF824XFI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF141NLB bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF643CGH, ENCFF827KUP 4655297800 ENCODE Processing Pipeline d33cd4a2ef1d080e7d4dc5c14bac4ad6 https://www.encodeproject.org/files/ENCFF141NLB/@@download/ENCFF141NLB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF865RIS bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF643CGH, ENCFF753GKC 4612444501 ENCODE Processing Pipeline 0742a38aedb5cef07041742c62eece71 https://www.encodeproject.org/files/ENCFF865RIS/@@download/ENCFF865RIS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF508RFI bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF643CGH 1352548348 ENCODE Processing Pipeline ba0361fecb9410ef4a1de7f8c43455c2 https://www.encodeproject.org/files/ENCFF508RFI/@@download/ENCFF508RFI.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF623HMX bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF643CGH 1272603777 ENCODE Processing Pipeline d3b3de3578856319c52a44bdb528fbe0 https://www.encodeproject.org/files/ENCFF623HMX/@@download/ENCFF623HMX.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF775QWE bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF643CGH 480248120 ENCODE Processing Pipeline e950c41aebbcdaa866649eb209ca057c https://www.encodeproject.org/files/ENCFF775QWE/@@download/ENCFF775QWE.bam GRCh38 released low read length, low read depth ENCFF855UFW bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF643CGH 881709437 ENCODE Processing Pipeline ceceee76a06b62d41c96e217a6d9f7ea https://www.encodeproject.org/files/ENCFF855UFW/@@download/ENCFF855UFW.bam GRCh38 released low read length, low read depth ENCFF125UKU bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF643CGH 4467204297 ENCODE Processing Pipeline 3b8028a39f7507d51dde1a855ee36c83 https://www.encodeproject.org/files/ENCFF125UKU/@@download/ENCFF125UKU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF893IIV bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF643CGH, ENCFF939GNW 4582506943 ENCODE Processing Pipeline bf2b5ca3b825032d315f14ca257f90c6 https://www.encodeproject.org/files/ENCFF893IIV/@@download/ENCFF893IIV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF907RHN bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF643CGH, ENCFF648WWC, ENCFF869EFH 4266642598 ENCODE Processing Pipeline 8ba63ca24dfe934c1b58a785743bc201 https://www.encodeproject.org/files/ENCFF907RHN/@@download/ENCFF907RHN.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF369UDW bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF643CGH, ENCFF863FQO 6374794038 ENCODE Processing Pipeline 8c80f03213a512b40dd273b978d14ed1 https://www.encodeproject.org/files/ENCFF369UDW/@@download/ENCFF369UDW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF067YAB bam alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF643CGH, ENCFF975DHQ 5345679842 ENCODE Processing Pipeline cdc55a76ec1c736a527889bb382dd666 https://www.encodeproject.org/files/ENCFF067YAB/@@download/ENCFF067YAB.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF025NCE bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF911VAQ, ENCFF993ZYN 4089622252 ENCODE Processing Pipeline ba5e3e67562e56bbc792a5829811cb07 https://www.encodeproject.org/files/ENCFF025NCE/@@download/ENCFF025NCE.bam GRCh38 released borderline replicate concordance ENCFF608ERF bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF643CGH, ENCFF646AFJ 4099547411 ENCODE Processing Pipeline e5be674efc344ea0b43b29e9f3f33743 https://www.encodeproject.org/files/ENCFF608ERF/@@download/ENCFF608ERF.bam GRCh38 released borderline replicate concordance ENCFF803DFJ bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF643CGH, ENCFF908JVL 4431395949 ENCODE Processing Pipeline df9c265397a9d16fd7c8b494f9995b65 https://www.encodeproject.org/files/ENCFF803DFJ/@@download/ENCFF803DFJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF995VXB bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF643CGH, ENCFF822SXZ 5072598667 ENCODE Processing Pipeline 0a5719890c588f9c148ffa5ed0131346 https://www.encodeproject.org/files/ENCFF995VXB/@@download/ENCFF995VXB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF195AOS bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF643CGH 646073618 ENCODE Processing Pipeline e54783eef87b57f5748ba7c8556d63ed https://www.encodeproject.org/files/ENCFF195AOS/@@download/ENCFF195AOS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF657UEE bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF643CGH 539172798 ENCODE Processing Pipeline b7575daa6f30f24d6c6e49c96fe7afb8 https://www.encodeproject.org/files/ENCFF657UEE/@@download/ENCFF657UEE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF135MMH bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF643CGH, ENCFF741TKM 5348385620 ENCODE Processing Pipeline 68e5d16bdd8580a0268d79e5e27d94de https://www.encodeproject.org/files/ENCFF135MMH/@@download/ENCFF135MMH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF082UFQ bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF643CGH 5285243828 ENCODE Processing Pipeline 804360dead79845dd0166b384d0c92e4 https://www.encodeproject.org/files/ENCFF082UFQ/@@download/ENCFF082UFQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF139IMF bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF643CGH 717344229 ENCODE Processing Pipeline 9d2e4a5af729fbefe064ede29d85bd93 https://www.encodeproject.org/files/ENCFF139IMF/@@download/ENCFF139IMF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF778CYP bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF643CGH 804594746 ENCODE Processing Pipeline b069cc620a56903082cb5db143aa10ca https://www.encodeproject.org/files/ENCFF778CYP/@@download/ENCFF778CYP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF057WON bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF643CGH, ENCFF860EDN 4133642392 ENCODE Processing Pipeline ec6ff5f1536d0f3caceda39018ab5395 https://www.encodeproject.org/files/ENCFF057WON/@@download/ENCFF057WON.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF526BIB bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF643CGH, ENCFF898JXS 4088256640 ENCODE Processing Pipeline 5a1c39e0d9263d3ef1bffcbf0bf539c4 https://www.encodeproject.org/files/ENCFF526BIB/@@download/ENCFF526BIB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF592PPU bam alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF010QKZ, ENCFF232BIX, ENCFF643CGH 4027684270 ENCODE Processing Pipeline c26f82a85f97ca528f52612f87c0d848 https://www.encodeproject.org/files/ENCFF592PPU/@@download/ENCFF592PPU.bam GRCh38 released antibody characterized with exemption ENCFF128DGJ bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF643CGH, ENCFF862UVE 4481420240 ENCODE Processing Pipeline 77955410c5cb6ea760b3b8a4978bb1f7 https://www.encodeproject.org/files/ENCFF128DGJ/@@download/ENCFF128DGJ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF120RXG bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF643CGH 5408272366 ENCODE Processing Pipeline e6653ea46000cca3e96d5eb8e976d6e8 https://www.encodeproject.org/files/ENCFF120RXG/@@download/ENCFF120RXG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF288EDV bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF643CGH, ENCFF969VJB, ENCFF971IAU 5394327450 ENCODE Processing Pipeline 49c6cf5a133309b43d77bb46f10fcb1b https://www.encodeproject.org/files/ENCFF288EDV/@@download/ENCFF288EDV.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF673NIW bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF643CGH, ENCFF788CVF 6341254618 ENCODE Processing Pipeline d27d4b182b94cf7f5609bfd837944074 https://www.encodeproject.org/files/ENCFF673NIW/@@download/ENCFF673NIW.bam GRCh38 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF882BOA bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 100 ENCFF439KQS, ENCFF643CGH, ENCFF784WEP 3947151664 ENCODE Processing Pipeline cd3e398d03d432bdb17add40c0c83db0 https://www.encodeproject.org/files/ENCFF882BOA/@@download/ENCFF882BOA.bam GRCh38 released experiment not submitted to GEO ENCFF393YFX bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF643CGH, ENCFF914HTT 3886043108 ENCODE Processing Pipeline 51eecf90503b88dc3630b46a748aaff4 https://www.encodeproject.org/files/ENCFF393YFX/@@download/ENCFF393YFX.bam GRCh38 released experiment not submitted to GEO ENCFF019MMH bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF643CGH 954224706 ENCODE Processing Pipeline 16b381910d9219bcf7e87fb38fbeb58d https://www.encodeproject.org/files/ENCFF019MMH/@@download/ENCFF019MMH.bam GRCh38 released low read length ENCFF057WQP bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF643CGH 922985472 ENCODE Processing Pipeline 04ba1f1cedde58ff0f136a73a67f6659 https://www.encodeproject.org/files/ENCFF057WQP/@@download/ENCFF057WQP.bam GRCh38 released low read length ENCFF225QIR bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF643CGH 3380322571 ENCODE Processing Pipeline 91196f820b05021d1ebcca83c0597daa https://www.encodeproject.org/files/ENCFF225QIR/@@download/ENCFF225QIR.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF168FQB bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF643CGH 4055959403 ENCODE Processing Pipeline a967362b76d4a0d23c64daa685095997 https://www.encodeproject.org/files/ENCFF168FQB/@@download/ENCFF168FQB.bam GRCh38 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF775MUG bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF643CGH, ENCFF778EKH 5324936808 ENCODE Processing Pipeline 6a2c8165f69f8b265082f80cfcd8cc2a https://www.encodeproject.org/files/ENCFF775MUG/@@download/ENCFF775MUG.bam GRCh38 released ENCFF966VDA bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF643CGH 5586436143 ENCODE Processing Pipeline b2ae8cf7a59fa510a2c690fa72f4a74c https://www.encodeproject.org/files/ENCFF966VDA/@@download/ENCFF966VDA.bam GRCh38 released ENCFF079TBV bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF643CGH 4320981477 ENCODE Processing Pipeline 7fb7d2db0d8c8414118057705d6a26b7 https://www.encodeproject.org/files/ENCFF079TBV/@@download/ENCFF079TBV.bam GRCh38 released ENCFF772XIR bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF643CGH 4567137992 ENCODE Processing Pipeline e7cdead9c70c303cd6edc3fe107b7ea0 https://www.encodeproject.org/files/ENCFF772XIR/@@download/ENCFF772XIR.bam GRCh38 released ENCFF091QWO bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF643CGH, ENCFF843QDR, ENCFF929RZN 4282527492 ENCODE Processing Pipeline d794b09177cfded64fa44d93cb314f3f https://www.encodeproject.org/files/ENCFF091QWO/@@download/ENCFF091QWO.bam GRCh38 released borderline replicate concordance ENCFF694VBR bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF643CGH 5151478365 ENCODE Processing Pipeline faf5d6a1adb654d560ffb580ddeb5ccc https://www.encodeproject.org/files/ENCFF694VBR/@@download/ENCFF694VBR.bam GRCh38 released borderline replicate concordance ENCFF122ZQQ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF643CGH, ENCFF965ZWE 1222953700 ENCODE Processing Pipeline 6617e1d49bb15bd9977851607e94771c https://www.encodeproject.org/files/ENCFF122ZQQ/@@download/ENCFF122ZQQ.bam GRCh38 released borderline replicate concordance ENCFF761QRJ bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF643CGH 1519589168 ENCODE Processing Pipeline 8524cb5e0805bdf97c95a3771064d062 https://www.encodeproject.org/files/ENCFF761QRJ/@@download/ENCFF761QRJ.bam GRCh38 released borderline replicate concordance ENCFF403JXW bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF643CGH 457008058 ENCODE Processing Pipeline 5c11f35c75ea7388c49490bf54e52d08 https://www.encodeproject.org/files/ENCFF403JXW/@@download/ENCFF403JXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF165NIG bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF643CGH 533390363 ENCODE Processing Pipeline 2a44619b4248fd5f6f2de337ca92511b https://www.encodeproject.org/files/ENCFF165NIG/@@download/ENCFF165NIG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF619YHC bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF643CGH 758680069 ENCODE Processing Pipeline 7010f0101a3076217e4e775d7a9a1d8a https://www.encodeproject.org/files/ENCFF619YHC/@@download/ENCFF619YHC.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF952VBJ bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF643CGH 1279802556 ENCODE Processing Pipeline b42fd64b2e060f8415271628d38b1401 https://www.encodeproject.org/files/ENCFF952VBJ/@@download/ENCFF952VBJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF509RDA bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF643CGH 840540546 ENCODE Processing Pipeline 19cd5804106948e11e8dbf3daa074ebc https://www.encodeproject.org/files/ENCFF509RDA/@@download/ENCFF509RDA.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF683FRP bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF643CGH 937090889 ENCODE Processing Pipeline 4e3c3a4bbd33a054f38e346eded3c305 https://www.encodeproject.org/files/ENCFF683FRP/@@download/ENCFF683FRP.bam GRCh38 released low read length, borderline replicate concordance, low read depth ENCFF890OOH bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF643CGH 368406397 ENCODE Processing Pipeline 44cdbf56e76fb362f4a078683d02725c https://www.encodeproject.org/files/ENCFF890OOH/@@download/ENCFF890OOH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF575DNN bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF643CGH 553938593 ENCODE Processing Pipeline e6b90c1b1ffe18cf51aa0b6433c395b5 https://www.encodeproject.org/files/ENCFF575DNN/@@download/ENCFF575DNN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF598KSY bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF643CGH 746170462 ENCODE Processing Pipeline 4fd9946c5f3643e026995fd12e54b5d6 https://www.encodeproject.org/files/ENCFF598KSY/@@download/ENCFF598KSY.bam GRCh38 released low read length, low read depth ENCFF136LXS bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF643CGH 632790233 ENCODE Processing Pipeline 15aeb14653ccb2007b96964c98fdadbd https://www.encodeproject.org/files/ENCFF136LXS/@@download/ENCFF136LXS.bam GRCh38 released low read length, low read depth ENCFF632KTY bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF643CGH 1039319879 ENCODE Processing Pipeline 8ba08834748a981866d8fd1b389e2ed0 https://www.encodeproject.org/files/ENCFF632KTY/@@download/ENCFF632KTY.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF408KYB bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF643CGH 1210215277 ENCODE Processing Pipeline c8ed829dcadde3725535e6c19657feb4 https://www.encodeproject.org/files/ENCFF408KYB/@@download/ENCFF408KYB.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF068LXE bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF643CGH 884892331 ENCODE Processing Pipeline 010d28e82a39a102328af8147fdd7df9 https://www.encodeproject.org/files/ENCFF068LXE/@@download/ENCFF068LXE.bam GRCh38 released low read length, low read depth ENCFF686TXK bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF643CGH 711882772 ENCODE Processing Pipeline b408176e9f58fd0c572362d7c7217ee9 https://www.encodeproject.org/files/ENCFF686TXK/@@download/ENCFF686TXK.bam GRCh38 released low read length, low read depth ENCFF990PBT bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF728MYT, ENCFF834FPN 6325934074 ENCODE Processing Pipeline 91a0cc21118c4e357679065b54a864cd https://www.encodeproject.org/files/ENCFF990PBT/@@download/ENCFF990PBT.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF898VBC bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF443KQR, ENCFF643CGH, ENCFF862RDJ 6750063180 ENCODE Processing Pipeline 22d5ccf982065dc7ee427fbec1427e97 https://www.encodeproject.org/files/ENCFF898VBC/@@download/ENCFF898VBC.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF231PHQ bam alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF643CGH, ENCFF895LBD 3928479674 ENCODE Processing Pipeline f529ae7441709fb24307e67d66f89485 https://www.encodeproject.org/files/ENCFF231PHQ/@@download/ENCFF231PHQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF033WII bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF643CGH 305311464 ENCODE Processing Pipeline fcc12a1320bee85526d5fe8244996301 https://www.encodeproject.org/files/ENCFF033WII/@@download/ENCFF033WII.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF162QXM bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF643CGH 538905893 ENCODE Processing Pipeline 4fe6bbb98f94a950c4ba95cb84ecce3f https://www.encodeproject.org/files/ENCFF162QXM/@@download/ENCFF162QXM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF778SLS bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF643CGH, ENCFF799AHQ 577680809 ENCODE Processing Pipeline 53336518afe12a24aee978efd39f0cf1 https://www.encodeproject.org/files/ENCFF778SLS/@@download/ENCFF778SLS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF978GYX bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF643CGH, ENCFF909CPR 543796703 ENCODE Processing Pipeline e294b507b0ce632a4f703ff73e9a1184 https://www.encodeproject.org/files/ENCFF978GYX/@@download/ENCFF978GYX.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF616QUW bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF410UIX, ENCFF643CGH, ENCFF932THV 3666929390 ENCODE Processing Pipeline 0dfbe4948de8563c7806a9d52642e3e3 https://www.encodeproject.org/files/ENCFF616QUW/@@download/ENCFF616QUW.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF577WGL bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF176RUD, ENCFF643CGH, ENCFF793URQ 2604331364 ENCODE Processing Pipeline ec8e1056919fc375620223cd90681740 https://www.encodeproject.org/files/ENCFF577WGL/@@download/ENCFF577WGL.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF490YME bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF643CGH, ENCFF805AVF 3850107825 ENCODE Processing Pipeline 343bd0ea3e844af012febaba80131957 https://www.encodeproject.org/files/ENCFF490YME/@@download/ENCFF490YME.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF794MPI bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF643CGH 4288649564 ENCODE Processing Pipeline 5d37d50796f840118fd5f8faf2f325be https://www.encodeproject.org/files/ENCFF794MPI/@@download/ENCFF794MPI.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF335GRT bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF643CGH 3767810753 ENCODE Processing Pipeline c080984ad9eec959832c28d38acea088 https://www.encodeproject.org/files/ENCFF335GRT/@@download/ENCFF335GRT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF643PRF bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF643CGH, ENCFF889XNL 7579409850 ENCODE Processing Pipeline 9e8c7b875065097dc32e5ba4a99cb260 https://www.encodeproject.org/files/ENCFF643PRF/@@download/ENCFF643PRF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF287PTX bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF643CGH 2916891044 ENCODE Processing Pipeline d061dd61cbd2ccd2d4a33d1e11beac28 https://www.encodeproject.org/files/ENCFF287PTX/@@download/ENCFF287PTX.bam GRCh38 released low read depth ENCFF447ZWG bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF643CGH, ENCFF786WVF 5476627584 ENCODE Processing Pipeline 6923aac8d47551861d95743cc2c4a7e3 https://www.encodeproject.org/files/ENCFF447ZWG/@@download/ENCFF447ZWG.bam GRCh38 released low read depth ENCFF993SEE bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF643CGH 5009944284 ENCODE Processing Pipeline 2bc3d8a8bb30f982394035f627db7f90 https://www.encodeproject.org/files/ENCFF993SEE/@@download/ENCFF993SEE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF717ZWZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF643CGH 4486967653 ENCODE Processing Pipeline bb2cad33d73053a9a27ef52b4315a8b4 https://www.encodeproject.org/files/ENCFF717ZWZ/@@download/ENCFF717ZWZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF860IRS bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF643CGH, ENCFF922VLO 5119317624 ENCODE Processing Pipeline dbb5326354f18a1f5c536392292fe3d3 https://www.encodeproject.org/files/ENCFF860IRS/@@download/ENCFF860IRS.bam GRCh38 released ENCFF263MBV bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF654EXQ, ENCFF996BVX 5814595941 ENCODE Processing Pipeline e08da8ba0ea59d85f32262d7b974d5e1 https://www.encodeproject.org/files/ENCFF263MBV/@@download/ENCFF263MBV.bam GRCh38 released ENCFF058RXV bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF643CGH 960102167 ENCODE Processing Pipeline 59f1a0d6b8cf68a5b420058e8ee3c57d https://www.encodeproject.org/files/ENCFF058RXV/@@download/ENCFF058RXV.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF372SGD bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF643CGH 2007975392 ENCODE Processing Pipeline e738d0443104a9c32c945b61aee4c9b4 https://www.encodeproject.org/files/ENCFF372SGD/@@download/ENCFF372SGD.bam GRCh38 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF861MLP bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF752NOE, ENCFF856HJS 4960844143 ENCODE Processing Pipeline 556b6952fa8dd4bb64b138a950bdb74d https://www.encodeproject.org/files/ENCFF861MLP/@@download/ENCFF861MLP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF112YSB bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF643CGH, ENCFF767SIE 5052306670 ENCODE Processing Pipeline 94475d5d83796bcf9bdd0b864e967261 https://www.encodeproject.org/files/ENCFF112YSB/@@download/ENCFF112YSB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF922HYP bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF643CGH 273352914 ENCODE Processing Pipeline e4f8f10571d3b9d83dc2bf6516bee029 https://www.encodeproject.org/files/ENCFF922HYP/@@download/ENCFF922HYP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF350KMY bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF643CGH 873201938 ENCODE Processing Pipeline 6dd834e1baa449d3c586ff6d8d81459b https://www.encodeproject.org/files/ENCFF350KMY/@@download/ENCFF350KMY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF385PRZ bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF643CGH 435059065 ENCODE Processing Pipeline a0a393f6fe1563780404b9617bf64346 https://www.encodeproject.org/files/ENCFF385PRZ/@@download/ENCFF385PRZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF315DZX bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF643CGH 836591325 ENCODE Processing Pipeline 7453b198663bf10a85512ffc3a8e5e22 https://www.encodeproject.org/files/ENCFF315DZX/@@download/ENCFF315DZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF104WBB bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF643CGH, ENCFF891NFG 4387821908 ENCODE Processing Pipeline 54938d2540de66dbb7075c05ebf11d30 https://www.encodeproject.org/files/ENCFF104WBB/@@download/ENCFF104WBB.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF621SSO bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF643CGH, ENCFF933DHP 5509266996 ENCODE Processing Pipeline 2ebd5b6e5c785d8410986e097b384567 https://www.encodeproject.org/files/ENCFF621SSO/@@download/ENCFF621SSO.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF427CAA bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF643CGH 2582870805 ENCODE Processing Pipeline 0fc8845f6ed6a8c0e31fe83ea6693e87 https://www.encodeproject.org/files/ENCFF427CAA/@@download/ENCFF427CAA.bam GRCh38 released low read depth ENCFF314PZG bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF643CGH 3510760816 ENCODE Processing Pipeline 01127955be0c195a54c8304bfa79ae75 https://www.encodeproject.org/files/ENCFF314PZG/@@download/ENCFF314PZG.bam GRCh38 released low read depth ENCFF799RPS bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF643CGH 769223121 ENCODE Processing Pipeline e22e5d3c53a9dfd5c41df292d8ed835a https://www.encodeproject.org/files/ENCFF799RPS/@@download/ENCFF799RPS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF576EDK bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF643CGH 681034922 ENCODE Processing Pipeline a7a96e2afa6873e71aa7c8ce480204e3 https://www.encodeproject.org/files/ENCFF576EDK/@@download/ENCFF576EDK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF549ZXF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF643CGH 1886531229 ENCODE Processing Pipeline d81ad340e3a6ed0bf59f6487f2ee40c3 https://www.encodeproject.org/files/ENCFF549ZXF/@@download/ENCFF549ZXF.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF525JGC bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF643CGH 408496479 ENCODE Processing Pipeline 052d26541a14bd1be96d4e4148bcac5b https://www.encodeproject.org/files/ENCFF525JGC/@@download/ENCFF525JGC.bam GRCh38 released low read length, low read depth missing control alignments ENCFF031YZL bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF643CGH 405162587 ENCODE Processing Pipeline 8260da507507ca968bb0718c457ddcc0 https://www.encodeproject.org/files/ENCFF031YZL/@@download/ENCFF031YZL.bam GRCh38 released low read length, low read depth missing control alignments ENCFF226EFM bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF643CGH, ENCFF720SPJ, ENCFF726QBO 5276153939 ENCODE Processing Pipeline 97d3bc90aa7e60d0094445362a986445 https://www.encodeproject.org/files/ENCFF226EFM/@@download/ENCFF226EFM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF742IEI bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF643CGH, ENCFF755CGW 5982758532 ENCODE Processing Pipeline 8b97dce9fe891da2203e23c82e5575a3 https://www.encodeproject.org/files/ENCFF742IEI/@@download/ENCFF742IEI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF894YZH bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF681LCG, ENCFF871JTS 5067675520 ENCODE Processing Pipeline 31ff21312ae630d64f9e62a256186242 https://www.encodeproject.org/files/ENCFF894YZH/@@download/ENCFF894YZH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF460FTQ bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF643CGH 5592501218 ENCODE Processing Pipeline 10b876ca86473d80e800896087529bb7 https://www.encodeproject.org/files/ENCFF460FTQ/@@download/ENCFF460FTQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF216SKQ bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF975GAK 472832631 ENCODE Processing Pipeline 1c3d3039c7d71317d3aff301a7f2ab4a https://www.encodeproject.org/files/ENCFF216SKQ/@@download/ENCFF216SKQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF065PVM bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF466DOW, ENCFF643CGH 600083012 ENCODE Processing Pipeline 0433ffe1a9b92217be9899dcafde1c9b https://www.encodeproject.org/files/ENCFF065PVM/@@download/ENCFF065PVM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456BVY bam alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF643CGH, ENCFF967GHE 3548766121 ENCODE Processing Pipeline ca088388e21e6104656034a77562ccff https://www.encodeproject.org/files/ENCFF456BVY/@@download/ENCFF456BVY.bam GRCh38 released antibody characterized with exemption ENCFF414AQN bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF643CGH 3799688743 ENCODE Processing Pipeline 03ffd2b7e429df1f88a97ede73551560 https://www.encodeproject.org/files/ENCFF414AQN/@@download/ENCFF414AQN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF193NZD bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF647OXS, ENCFF781NWB 3005285800 ENCODE Processing Pipeline bc11e3dcd2ab56aab0f1e3ec854e8531 https://www.encodeproject.org/files/ENCFF193NZD/@@download/ENCFF193NZD.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF379YIZ bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF643CGH 2781443267 ENCODE Processing Pipeline 486a45436dfd8c55c68713c054325923 https://www.encodeproject.org/files/ENCFF379YIZ/@@download/ENCFF379YIZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF869UFK bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF643CGH, ENCFF679UZB 3197805242 ENCODE Processing Pipeline 39ac93dcfc4c06a52b094b6aa8533605 https://www.encodeproject.org/files/ENCFF869UFK/@@download/ENCFF869UFK.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF536AIG bam alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF643CGH 664748579 ENCODE Processing Pipeline 0763775ea7689145daff2b72a586ea3c https://www.encodeproject.org/files/ENCFF536AIG/@@download/ENCFF536AIG.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF819DOC bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF643CGH 4698218567 ENCODE Processing Pipeline bf0e80b375256cc1e41c6e8ef9b56a61 https://www.encodeproject.org/files/ENCFF819DOC/@@download/ENCFF819DOC.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF421ZIB bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF643CGH 6098764657 ENCODE Processing Pipeline 9e20af8eef31fae75bb6a73a593f91c5 https://www.encodeproject.org/files/ENCFF421ZIB/@@download/ENCFF421ZIB.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF514UAV bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF643CGH, ENCFF743IYA 7443874733 ENCODE Processing Pipeline fd6742a4e9ec2cbf9ecfeacd41d5bfac https://www.encodeproject.org/files/ENCFF514UAV/@@download/ENCFF514UAV.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF319QUU bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF643CGH, ENCFF860SCI 7016118728 ENCODE Processing Pipeline 15c9a0e8937c70e9a1744d9ff671e01f https://www.encodeproject.org/files/ENCFF319QUU/@@download/ENCFF319QUU.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF437HNK bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF643CGH, ENCFF809LBJ 3279607400 ENCODE Processing Pipeline 08df1b7ce3e5876b41704119b32ebe86 https://www.encodeproject.org/files/ENCFF437HNK/@@download/ENCFF437HNK.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF658CWZ bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF643CGH 3288635458 ENCODE Processing Pipeline f3908cbe6322bddd22c1245a942e597d https://www.encodeproject.org/files/ENCFF658CWZ/@@download/ENCFF658CWZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF180KHA bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF643CGH 1909373258 ENCODE Processing Pipeline ee319981aa8ef8f876269f32aed41e23 https://www.encodeproject.org/files/ENCFF180KHA/@@download/ENCFF180KHA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF770RPH bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF921ZXR 1091515783 ENCODE Processing Pipeline 6cdaff2ee92d40cdad209cf294b8db2a https://www.encodeproject.org/files/ENCFF770RPH/@@download/ENCFF770RPH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF873BRB bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF643CGH, ENCFF673KNX 3548729693 ENCODE Processing Pipeline 3a6324a3b1a450246099d985152f6071 https://www.encodeproject.org/files/ENCFF873BRB/@@download/ENCFF873BRB.bam GRCh38 released ENCFF149LTH bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF643CGH, ENCFF687MII 5019702036 ENCODE Processing Pipeline 8f13acc1985a56faec31c7d59ec765bb https://www.encodeproject.org/files/ENCFF149LTH/@@download/ENCFF149LTH.bam GRCh38 released ENCFF904MWX bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF643CGH, ENCFF793GUD 4412910523 ENCODE Processing Pipeline 30b608e401a36b6dde8e64ce6052e7db https://www.encodeproject.org/files/ENCFF904MWX/@@download/ENCFF904MWX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF313PRG bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF643CGH, ENCFF683HBT 5077423885 ENCODE Processing Pipeline 65d634b89c76051f772e6b61f810af89 https://www.encodeproject.org/files/ENCFF313PRG/@@download/ENCFF313PRG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF769AMJ bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF643CGH 4149330101 ENCODE Processing Pipeline 17f19e9b81b135007765c0ef84fdcb0a https://www.encodeproject.org/files/ENCFF769AMJ/@@download/ENCFF769AMJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF847XON bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF643CGH, ENCFF870RNA 5094096990 ENCODE Processing Pipeline e5e035fca7b70a8cadaf2fa2140dc208 https://www.encodeproject.org/files/ENCFF847XON/@@download/ENCFF847XON.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF853LEL bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF643CGH, ENCFF699NLS 4739487818 ENCODE Processing Pipeline 0a73461990f02e54f688cee052a2832e https://www.encodeproject.org/files/ENCFF853LEL/@@download/ENCFF853LEL.bam GRCh38 released antibody characterized with exemption ENCFF720RKT bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF643CGH, ENCFF770SQJ, ENCFF984URP 5955214645 ENCODE Processing Pipeline 331348edfe02efacfd9556514d3a6122 https://www.encodeproject.org/files/ENCFF720RKT/@@download/ENCFF720RKT.bam GRCh38 released antibody characterized with exemption ENCFF449IUJ bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF643CGH 540733347 ENCODE Processing Pipeline d38238759c8aaa259ebc5cde2e0776b4 https://www.encodeproject.org/files/ENCFF449IUJ/@@download/ENCFF449IUJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF850TET bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF643CGH 1282865743 ENCODE Processing Pipeline fccb64867ab79e5f3d5303b1f85b130a https://www.encodeproject.org/files/ENCFF850TET/@@download/ENCFF850TET.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF146SND bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF643CGH 476711196 ENCODE Processing Pipeline 136c1bd5bf9b79802c2488dad1f40cfa https://www.encodeproject.org/files/ENCFF146SND/@@download/ENCFF146SND.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF560SVR bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF643CGH 413750036 ENCODE Processing Pipeline bbe92db76345eeb07f41744e0a62d7b8 https://www.encodeproject.org/files/ENCFF560SVR/@@download/ENCFF560SVR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF787FUW bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF643CGH 411716544 ENCODE Processing Pipeline 594ac486846bc3d8f5c7842fda819d87 https://www.encodeproject.org/files/ENCFF787FUW/@@download/ENCFF787FUW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF661CTX bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF643CGH 398926193 ENCODE Processing Pipeline 726b0c9ef606b3a6e7c4d934842ec368 https://www.encodeproject.org/files/ENCFF661CTX/@@download/ENCFF661CTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF600IBV bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF643CGH 655843932 ENCODE Processing Pipeline 106b86eb7637353ea4929b0081d1cecf https://www.encodeproject.org/files/ENCFF600IBV/@@download/ENCFF600IBV.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF415TYP bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF643CGH 890678514 ENCODE Processing Pipeline dbfe0b3094d8bf2dd39a1ad1be25d207 https://www.encodeproject.org/files/ENCFF415TYP/@@download/ENCFF415TYP.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF473LBU bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF643CGH 4291365139 ENCODE Processing Pipeline 12098302fa1c5595351596fc236c9073 https://www.encodeproject.org/files/ENCFF473LBU/@@download/ENCFF473LBU.bam GRCh38 released ENCFF154KUY bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF643CGH 5184903971 ENCODE Processing Pipeline 6ba0fb8a1a1bcefa7955adaa6f859b9b https://www.encodeproject.org/files/ENCFF154KUY/@@download/ENCFF154KUY.bam GRCh38 released ENCFF457YWN bam alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF643CGH, ENCFF999VOH 2669282882 ENCODE Processing Pipeline ed0152e06df36cf7bd507c228ff2b4c5 https://www.encodeproject.org/files/ENCFF457YWN/@@download/ENCFF457YWN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF317PBJ bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF643CGH, ENCFF765ZNI 4308941769 ENCODE Processing Pipeline 94873754e4d6a7d150d948ef64729668 https://www.encodeproject.org/files/ENCFF317PBJ/@@download/ENCFF317PBJ.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF852XUO bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF643CGH, ENCFF812LUV 3717188272 ENCODE Processing Pipeline 5775be8dd782d88b7884faa229dcab0a https://www.encodeproject.org/files/ENCFF852XUO/@@download/ENCFF852XUO.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF458VET bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF643CGH 831890910 ENCODE Processing Pipeline 0be1aa7120b784c406ba2d107cb9fcf3 https://www.encodeproject.org/files/ENCFF458VET/@@download/ENCFF458VET.bam GRCh38 released low read length biological replicates with identical biosample ENCFF600KCK bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF643CGH 850094559 ENCODE Processing Pipeline 2af7b828958802631ccc099ba5360c2d https://www.encodeproject.org/files/ENCFF600KCK/@@download/ENCFF600KCK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF699CPF bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF643CGH 1519668787 ENCODE Processing Pipeline 1122fa21af682d3d664174f607e844bc https://www.encodeproject.org/files/ENCFF699CPF/@@download/ENCFF699CPF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF818NIT bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF892EKB 1843366764 ENCODE Processing Pipeline 4fddc6864052f5c99b70aded87c42b6b https://www.encodeproject.org/files/ENCFF818NIT/@@download/ENCFF818NIT.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF080IVM bam alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF643CGH, ENCFF800IPM 2365143363 ENCODE Processing Pipeline a22418c7cd2eb17890cb566c654cc1b1 https://www.encodeproject.org/files/ENCFF080IVM/@@download/ENCFF080IVM.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF013XSL bam alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF643CGH, ENCFF713HTL 3306782501 ENCODE Processing Pipeline fa67ebbc18ee786d092c3242144d82fc https://www.encodeproject.org/files/ENCFF013XSL/@@download/ENCFF013XSL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF572HPL bam alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF643CGH, ENCFF759FBS 4011503797 ENCODE Processing Pipeline 7bdfced801c993e7d91f1938be6ff394 https://www.encodeproject.org/files/ENCFF572HPL/@@download/ENCFF572HPL.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF052VVR bam alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF643CGH, ENCFF869NYZ 3504883603 ENCODE Processing Pipeline 4e372a39a43b7b994fe84b46a559b735 https://www.encodeproject.org/files/ENCFF052VVR/@@download/ENCFF052VVR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF213CZL bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF991ROT 400550110 ENCODE Processing Pipeline 18869a0c9319b42dadf5a05e4286e24b https://www.encodeproject.org/files/ENCFF213CZL/@@download/ENCFF213CZL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF428XVO bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF643CGH 796346833 ENCODE Processing Pipeline 8673bf24241aed24a21ccd2ad55d9365 https://www.encodeproject.org/files/ENCFF428XVO/@@download/ENCFF428XVO.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF404QMD bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF643CGH 272813134 ENCODE Processing Pipeline 58df179211557df3e97d87f74a1940f1 https://www.encodeproject.org/files/ENCFF404QMD/@@download/ENCFF404QMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF964ESQ bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF643CGH 678130504 ENCODE Processing Pipeline 2c166cee3bb4f852c7f688c7f69a85c8 https://www.encodeproject.org/files/ENCFF964ESQ/@@download/ENCFF964ESQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF987DEN bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF643CGH 464079924 ENCODE Processing Pipeline d29dcd7ab4cf7ed709531dae5e2fc311 https://www.encodeproject.org/files/ENCFF987DEN/@@download/ENCFF987DEN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF219RFB bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF643CGH 1300599621 ENCODE Processing Pipeline f9d4f258a50ba76d9fca8e9ac49497a9 https://www.encodeproject.org/files/ENCFF219RFB/@@download/ENCFF219RFB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF358AIJ bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF643CGH, ENCFF762OUK 5529535355 ENCODE Processing Pipeline 242be94d9320a8b27c152687ba075588 https://www.encodeproject.org/files/ENCFF358AIJ/@@download/ENCFF358AIJ.bam GRCh38 released ENCFF752QAV bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF643CGH 5490983413 ENCODE Processing Pipeline 04a71ee2c50dbd788ecfa95870aa2977 https://www.encodeproject.org/files/ENCFF752QAV/@@download/ENCFF752QAV.bam GRCh38 released ENCFF935OOR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF643CGH 670126053 ENCODE Processing Pipeline 5d5c19d35d8e5976f61e7fb92fe3a301 https://www.encodeproject.org/files/ENCFF935OOR/@@download/ENCFF935OOR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF519GVE bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF643CGH 494931638 ENCODE Processing Pipeline e31bbb788c62f1aef00040428ade11b4 https://www.encodeproject.org/files/ENCFF519GVE/@@download/ENCFF519GVE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF196MMQ bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF643CGH 2701446100 ENCODE Processing Pipeline 192a51cb47d01fa076639ad11963061f https://www.encodeproject.org/files/ENCFF196MMQ/@@download/ENCFF196MMQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF228UIL bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF798AFN, ENCFF940DHI 3410587014 ENCODE Processing Pipeline 65aed075dd2794a8abb688e7d352283c https://www.encodeproject.org/files/ENCFF228UIL/@@download/ENCFF228UIL.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF412AMR bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF643CGH 4316226121 ENCODE Processing Pipeline fb882255eab425e333b572f5229a89e6 https://www.encodeproject.org/files/ENCFF412AMR/@@download/ENCFF412AMR.bam GRCh38 released mild to moderate bottlenecking ENCFF279QAV bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF643CGH, ENCFF956NJR 3963029991 ENCODE Processing Pipeline 05daaa4a0a206ecb723912785bd721e2 https://www.encodeproject.org/files/ENCFF279QAV/@@download/ENCFF279QAV.bam GRCh38 released mild to moderate bottlenecking ENCFF431IVA bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF643CGH, ENCFF871VWH 3827460992 ENCODE Processing Pipeline 7e8c9966fadd7accecffa6b02b53f9ee https://www.encodeproject.org/files/ENCFF431IVA/@@download/ENCFF431IVA.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF528YNP bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF643CGH, ENCFF751XCN 5434843391 ENCODE Processing Pipeline fff37a767a1fb79b386f58b25af5aee0 https://www.encodeproject.org/files/ENCFF528YNP/@@download/ENCFF528YNP.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF015LMA bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF643CGH 657514861 ENCODE Processing Pipeline 1a2bd6471c41754adc152c46bf5d3c52 https://www.encodeproject.org/files/ENCFF015LMA/@@download/ENCFF015LMA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF889YQP bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF643CGH 735950096 ENCODE Processing Pipeline fc9f745b455a47e651e706655f20794e https://www.encodeproject.org/files/ENCFF889YQP/@@download/ENCFF889YQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF165JXX bam alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF643CGH 2705039537 ENCODE Processing Pipeline 0f104bf4833d3ff131556ef76cb7e706 https://www.encodeproject.org/files/ENCFF165JXX/@@download/ENCFF165JXX.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF893VEW bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF643CGH, ENCFF735ESZ 4628095792 ENCODE Processing Pipeline d1a16533a821ab592130b5e79ebd40ff https://www.encodeproject.org/files/ENCFF893VEW/@@download/ENCFF893VEW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF780ZCG bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF643CGH 4288702222 ENCODE Processing Pipeline 43b1ccf04b58809ff233361c3039d874 https://www.encodeproject.org/files/ENCFF780ZCG/@@download/ENCFF780ZCG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF383MXO bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF643CGH, ENCFF996EOY 302221452 ENCODE Processing Pipeline 8b39ccaed445b516a60024ca8f81a7fe https://www.encodeproject.org/files/ENCFF383MXO/@@download/ENCFF383MXO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF374UVV bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF320DMB, ENCFF643CGH 383435474 ENCODE Processing Pipeline ead8555e582a32b9c5e83b58d22a3974 https://www.encodeproject.org/files/ENCFF374UVV/@@download/ENCFF374UVV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF458JNU bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF643CGH 437853420 ENCODE Processing Pipeline 01ebd87ad6a1b3372ffb58e06d9666fd https://www.encodeproject.org/files/ENCFF458JNU/@@download/ENCFF458JNU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF108SNZ bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF643CGH, ENCFF926CUN 404390606 ENCODE Processing Pipeline 98524a0e0cd2b0b093eea69b9beed857 https://www.encodeproject.org/files/ENCFF108SNZ/@@download/ENCFF108SNZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF560QOE bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF643CGH 5419818536 ENCODE Processing Pipeline 9d2a854513d07c5e8b6b29ddb3ee1b46 https://www.encodeproject.org/files/ENCFF560QOE/@@download/ENCFF560QOE.bam GRCh38 released mild to moderate bottlenecking ENCFF508SQK bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF643CGH, ENCFF809IJU, ENCFF894NUI 5553607561 ENCODE Processing Pipeline 8e845094bc6120b06bb64086293a023b https://www.encodeproject.org/files/ENCFF508SQK/@@download/ENCFF508SQK.bam GRCh38 released mild to moderate bottlenecking ENCFF464LNE bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF643CGH 3972123160 ENCODE Processing Pipeline 04b399230a95cc9b6581c6f3ce9a68e7 https://www.encodeproject.org/files/ENCFF464LNE/@@download/ENCFF464LNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF235WLU bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF811KIP, ENCFF815ZVG 4132243944 ENCODE Processing Pipeline 29ae9f29f2f0fb0b8ac8ad19a868eeca https://www.encodeproject.org/files/ENCFF235WLU/@@download/ENCFF235WLU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF946HGR bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF643CGH, ENCFF781UOJ, ENCFF858OMD 5165428381 ENCODE Processing Pipeline 52d58f2ab9099d2046d2df7ddbc7e289 https://www.encodeproject.org/files/ENCFF946HGR/@@download/ENCFF946HGR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF667QVL bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF643CGH, ENCFF709VMO 6766826457 ENCODE Processing Pipeline 20f863c2bdf9ef13d7c782160baf9139 https://www.encodeproject.org/files/ENCFF667QVL/@@download/ENCFF667QVL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF117KAP bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF643CGH 745812924 ENCODE Processing Pipeline 0b47d82fd042c5a061b2df4034295ee7 https://www.encodeproject.org/files/ENCFF117KAP/@@download/ENCFF117KAP.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF705LQZ bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF643CGH 854240111 ENCODE Processing Pipeline e7319907c624e72c59a6e7bb76559587 https://www.encodeproject.org/files/ENCFF705LQZ/@@download/ENCFF705LQZ.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF700PHB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF643CGH, ENCFF914JSK 4301687007 ENCODE Processing Pipeline 12a80c43bdbfe0d4e46eb9cebd61019d https://www.encodeproject.org/files/ENCFF700PHB/@@download/ENCFF700PHB.bam GRCh38 released mild to moderate bottlenecking ENCFF603RWK bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF643CGH 5450252101 ENCODE Processing Pipeline baf02b1e396bacf9ef264fcc2752eaf8 https://www.encodeproject.org/files/ENCFF603RWK/@@download/ENCFF603RWK.bam GRCh38 released mild to moderate bottlenecking ENCFF590MQC bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF643CGH, ENCFF904ZYJ 4904004857 ENCODE Processing Pipeline e7c4fdffe96361ce869789add5b3410a https://www.encodeproject.org/files/ENCFF590MQC/@@download/ENCFF590MQC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF399LLP bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF643CGH, ENCFF956EJH 3662303715 ENCODE Processing Pipeline a95d78e5c1220f81b7c92dcc7d40f88b https://www.encodeproject.org/files/ENCFF399LLP/@@download/ENCFF399LLP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF159MOK bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF643CGH, ENCFF774LQB 2926761962 ENCODE Processing Pipeline 3d06ba66cbf71671d7e9e4dd16875934 https://www.encodeproject.org/files/ENCFF159MOK/@@download/ENCFF159MOK.bam GRCh38 released low read depth ENCFF331PWP bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF643CGH 3086311102 ENCODE Processing Pipeline 495968d400f798c3cc81a50ce1f5a5ba https://www.encodeproject.org/files/ENCFF331PWP/@@download/ENCFF331PWP.bam GRCh38 released low read depth ENCFF461GBT bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF643CGH 776074913 ENCODE Processing Pipeline 311bbd17799b6573d3ab0f770fca3fc7 https://www.encodeproject.org/files/ENCFF461GBT/@@download/ENCFF461GBT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF467POD bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF643CGH 521718271 ENCODE Processing Pipeline e3399c47a2586a410eb838f0d14d3447 https://www.encodeproject.org/files/ENCFF467POD/@@download/ENCFF467POD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF798AWZ bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF643CGH 7746680570 ENCODE Processing Pipeline 4067c8411778e5ac920d119ebf94b6a9 https://www.encodeproject.org/files/ENCFF798AWZ/@@download/ENCFF798AWZ.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF136VHO bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF643CGH, ENCFF664IIE 9649172996 ENCODE Processing Pipeline af0ef05d01885f1f429fd60d05f690cc https://www.encodeproject.org/files/ENCFF136VHO/@@download/ENCFF136VHO.bam GRCh38 released antibody characterized with exemption NTR biosample ENCFF247KKW bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF809ESS 526817552 ENCODE Processing Pipeline 2478a9eb8cccd9f1cd9d1aa2892fd7b2 https://www.encodeproject.org/files/ENCFF247KKW/@@download/ENCFF247KKW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046IYE bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF643CGH 639475540 ENCODE Processing Pipeline 94a7dbed32a317c566d8f37bbd82ee3c https://www.encodeproject.org/files/ENCFF046IYE/@@download/ENCFF046IYE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF681OPS bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF643CGH, ENCFF699XDW 874364556 ENCODE Processing Pipeline 7407c75168b33ffb8331e0729f40af5c https://www.encodeproject.org/files/ENCFF681OPS/@@download/ENCFF681OPS.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF070PRN bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF643CGH 909471115 ENCODE Processing Pipeline c15b5797fbef8f407b484122f5e10cb5 https://www.encodeproject.org/files/ENCFF070PRN/@@download/ENCFF070PRN.bam GRCh38 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF178POG bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF830GPY, ENCFF912ESY 5429581184 ENCODE Processing Pipeline db82115f74d302f8b2e4003ddb3a709b https://www.encodeproject.org/files/ENCFF178POG/@@download/ENCFF178POG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF911MDN bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF643CGH 6775044574 ENCODE Processing Pipeline bc640f1b93247d7d24b11618a43a9c75 https://www.encodeproject.org/files/ENCFF911MDN/@@download/ENCFF911MDN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF511OFO bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF643CGH 2414463757 ENCODE Processing Pipeline c754c0d56ffa29cef3b4cc779c49a2f6 https://www.encodeproject.org/files/ENCFF511OFO/@@download/ENCFF511OFO.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF377EHJ bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF643CGH, ENCFF674DQN, ENCFF908KEB 1516734432 ENCODE Processing Pipeline 92108b9923069105535a41e162561ea2 https://www.encodeproject.org/files/ENCFF377EHJ/@@download/ENCFF377EHJ.bam GRCh38 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF200KSU bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF643CGH 857295497 ENCODE Processing Pipeline f82d709f6fbd23d0d6cdb5646e89aa7e https://www.encodeproject.org/files/ENCFF200KSU/@@download/ENCFF200KSU.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF444QTA bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF643CGH 641245931 ENCODE Processing Pipeline 38d93af11dcddf8f2cc5f09b0ab8b87c https://www.encodeproject.org/files/ENCFF444QTA/@@download/ENCFF444QTA.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF864ELR bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF002OWA, ENCFF643CGH, ENCFF833BQT 6571420145 ENCODE Processing Pipeline 205ca7ecd5db655674b3cda523681e52 https://www.encodeproject.org/files/ENCFF864ELR/@@download/ENCFF864ELR.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF354GWS bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF631JSV, ENCFF643CGH, ENCFF715KYL 6809404961 ENCODE Processing Pipeline b156b33aa853f03615a407b2d76d336c https://www.encodeproject.org/files/ENCFF354GWS/@@download/ENCFF354GWS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF239VPD bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF643CGH, ENCFF961HCT 2826836903 ENCODE Processing Pipeline 878001d604bca097ee4c3622cd57a560 https://www.encodeproject.org/files/ENCFF239VPD/@@download/ENCFF239VPD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF111JJX bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF643CGH, ENCFF818OPZ 4152509225 ENCODE Processing Pipeline a2db5002ec8c2d99aba9861bf90b0e37 https://www.encodeproject.org/files/ENCFF111JJX/@@download/ENCFF111JJX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF618YRD bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF643CGH, ENCFF653BTH 3920442544 ENCODE Processing Pipeline 1e8da333551d17d83b4296e91a3a646c https://www.encodeproject.org/files/ENCFF618YRD/@@download/ENCFF618YRD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF833MIU bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF688XKX, ENCFF742FEB 4786848536 ENCODE Processing Pipeline 5622756f2562ca8e7947fe5541dcafc6 https://www.encodeproject.org/files/ENCFF833MIU/@@download/ENCFF833MIU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF582UQP bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF876PMY, ENCFF912QAD 4009461634 ENCODE Processing Pipeline 60f934c20f438807b33ce62fe5799a30 https://www.encodeproject.org/files/ENCFF582UQP/@@download/ENCFF582UQP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF940EAU bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF643CGH 4586788588 ENCODE Processing Pipeline 44af9a9aa0fe64682dcad412026cd7b5 https://www.encodeproject.org/files/ENCFF940EAU/@@download/ENCFF940EAU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF125HKL bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF643CGH, ENCFF710PPD 3571437627 ENCODE Processing Pipeline e67eab9cbb2c3327732e3c2affdb5e4c https://www.encodeproject.org/files/ENCFF125HKL/@@download/ENCFF125HKL.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF046VNU bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF643CGH 3893144631 ENCODE Processing Pipeline f54ab04cffbddb0a498155a87f9782c7 https://www.encodeproject.org/files/ENCFF046VNU/@@download/ENCFF046VNU.bam GRCh38 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF715AMR bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF643CGH, ENCFF909OVD 4418469896 ENCODE Processing Pipeline d226963d8824dd3e7b882aeef0897043 https://www.encodeproject.org/files/ENCFF715AMR/@@download/ENCFF715AMR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF195WOK bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF643CGH 3975801179 ENCODE Processing Pipeline c3a376d513f47ce6778faf9fa1487cf8 https://www.encodeproject.org/files/ENCFF195WOK/@@download/ENCFF195WOK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF071KOM bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF643CGH 683721458 ENCODE Processing Pipeline 108239b49ca7146ee85240e2e9d46e96 https://www.encodeproject.org/files/ENCFF071KOM/@@download/ENCFF071KOM.bam GRCh38 released low read length, low read depth ENCFF236ZUN bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF643CGH 637516364 ENCODE Processing Pipeline b7b7915f67625dc7d6aeeca40396539e https://www.encodeproject.org/files/ENCFF236ZUN/@@download/ENCFF236ZUN.bam GRCh38 released low read length, low read depth ENCFF997ZMP bam alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF385KCF, ENCFF643CGH, ENCFF897CNI 2173305434 ENCODE Processing Pipeline 468960c001f56e9bdbc6d3aac5086329 https://www.encodeproject.org/files/ENCFF997ZMP/@@download/ENCFF997ZMP.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF151UNX bam alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF643CGH 4021508634 ENCODE Processing Pipeline bd518cb2e97c9290529d853770adcff4 https://www.encodeproject.org/files/ENCFF151UNX/@@download/ENCFF151UNX.bam GRCh38 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF918JWJ bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF643CGH, ENCFF999EFL 4736900055 ENCODE Processing Pipeline 200d1ae82bc394deb13451661e4f4d14 https://www.encodeproject.org/files/ENCFF918JWJ/@@download/ENCFF918JWJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF580EBG bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF643CGH 5241107195 ENCODE Processing Pipeline 7ce628aeb9d8de5bc33788e40848a2f2 https://www.encodeproject.org/files/ENCFF580EBG/@@download/ENCFF580EBG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF398XYY bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF643CGH, ENCFF802KGS 3949872882 ENCODE Processing Pipeline bbb871c7e55d162b987a54efb8237a55 https://www.encodeproject.org/files/ENCFF398XYY/@@download/ENCFF398XYY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF586JGY bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF643CGH 4926837597 ENCODE Processing Pipeline cf94aa8048270356f70097a653541fc1 https://www.encodeproject.org/files/ENCFF586JGY/@@download/ENCFF586JGY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF514DJN bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF643CGH, ENCFF838ZUT 3269197693 ENCODE Processing Pipeline 9fce517a3218fccf371afef46e891339 https://www.encodeproject.org/files/ENCFF514DJN/@@download/ENCFF514DJN.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF330LZA bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF643CGH 5116439793 ENCODE Processing Pipeline 87489a79d1591fc6c1e0a3719a3e5d37 https://www.encodeproject.org/files/ENCFF330LZA/@@download/ENCFF330LZA.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF454DSR bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF643CGH, ENCFF806CEC 3278375464 ENCODE Processing Pipeline 63e32e928bfa31e604f941305866fa8b https://www.encodeproject.org/files/ENCFF454DSR/@@download/ENCFF454DSR.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF509BKM bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF643CGH 3491161037 ENCODE Processing Pipeline 14e70596573f1082e3c84c56515a6eaa https://www.encodeproject.org/files/ENCFF509BKM/@@download/ENCFF509BKM.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF850ONE bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF643CGH, ENCFF686DFA 5250982084 ENCODE Processing Pipeline 69b5794076f64a05c93fa1a1b331dd17 https://www.encodeproject.org/files/ENCFF850ONE/@@download/ENCFF850ONE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF791VBW bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF643CGH, ENCFF807ATT, ENCFF938LON 3934270232 ENCODE Processing Pipeline 658835f1b09047ac15aa75dfa3b29955 https://www.encodeproject.org/files/ENCFF791VBW/@@download/ENCFF791VBW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF477CYZ bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF643CGH, ENCFF932JXG 3664233820 ENCODE Processing Pipeline 78463c0bc26579f7ed15a6e2c37c1885 https://www.encodeproject.org/files/ENCFF477CYZ/@@download/ENCFF477CYZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF784MTZ bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF643CGH 3360905951 ENCODE Processing Pipeline 3b637168a899e31881e1e34073926a8b https://www.encodeproject.org/files/ENCFF784MTZ/@@download/ENCFF784MTZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF362TFV bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF643CGH 3642804582 ENCODE Processing Pipeline db86e35076fb07802245438eff2e4643 https://www.encodeproject.org/files/ENCFF362TFV/@@download/ENCFF362TFV.bam GRCh38 released borderline replicate concordance, low read depth ENCFF007ALP bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF643CGH, ENCFF678SZB, ENCFF864KXI 4210220051 ENCODE Processing Pipeline f2084e748f4db44f5c48d17d817a1a71 https://www.encodeproject.org/files/ENCFF007ALP/@@download/ENCFF007ALP.bam GRCh38 released borderline replicate concordance, low read depth ENCFF081QKL bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF643CGH, ENCFF992OBB 506994360 ENCODE Processing Pipeline 7a8e2742e28a278324047481c7c0e65a https://www.encodeproject.org/files/ENCFF081QKL/@@download/ENCFF081QKL.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF776NZQ bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF643CGH, ENCFF744SCS 535180642 ENCODE Processing Pipeline e1cee83cc5b5795c55c4fd87e1073f83 https://www.encodeproject.org/files/ENCFF776NZQ/@@download/ENCFF776NZQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF287NMD bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF072TOT, ENCFF643CGH 694393443 ENCODE Processing Pipeline 69af06eee585cbe84d829bd51a3ee844 https://www.encodeproject.org/files/ENCFF287NMD/@@download/ENCFF287NMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF619DQL bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF643CGH, ENCFF746USU 932509056 ENCODE Processing Pipeline 12f881095c2a90e486b93dea8c1002f8 https://www.encodeproject.org/files/ENCFF619DQL/@@download/ENCFF619DQL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF054HSY bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF643CGH 7396390139 ENCODE Processing Pipeline c301db525c1a81a764432874c342123d https://www.encodeproject.org/files/ENCFF054HSY/@@download/ENCFF054HSY.bam GRCh38 released borderline replicate concordance ENCFF724LHA bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF643CGH, ENCFF810COJ 6558716004 ENCODE Processing Pipeline bbf36f0fc7d9aa4731a81669c084853e https://www.encodeproject.org/files/ENCFF724LHA/@@download/ENCFF724LHA.bam GRCh38 released borderline replicate concordance ENCFF658SGW bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF999VUF 501025320 ENCODE Processing Pipeline 434842bc7b61d77ae7f7e5bb34f159cb https://www.encodeproject.org/files/ENCFF658SGW/@@download/ENCFF658SGW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF278POV bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF753OYD 550703548 ENCODE Processing Pipeline c44b2405357b640c6a9a5873ea1369ca https://www.encodeproject.org/files/ENCFF278POV/@@download/ENCFF278POV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF600NPD bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF643CGH, ENCFF809EPG 5283441771 ENCODE Processing Pipeline e00d6ad304c7a8eff8ed1d0e9f7b0262 https://www.encodeproject.org/files/ENCFF600NPD/@@download/ENCFF600NPD.bam GRCh38 released mild to moderate bottlenecking ENCFF778ZCF bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF643CGH, ENCFF691KWL 4454197669 ENCODE Processing Pipeline d6c7ec81114d981aace0d737c84a91db https://www.encodeproject.org/files/ENCFF778ZCF/@@download/ENCFF778ZCF.bam GRCh38 released mild to moderate bottlenecking ENCFF777ZLD bam alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF643CGH 3669128705 ENCODE Processing Pipeline 0675d354435ae27d01a7853120ed4d87 https://www.encodeproject.org/files/ENCFF777ZLD/@@download/ENCFF777ZLD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF396GSL bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF643CGH 522450414 ENCODE Processing Pipeline e58d6951401674cd52447625be791fd2 https://www.encodeproject.org/files/ENCFF396GSL/@@download/ENCFF396GSL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF898VJT bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF643CGH 783900089 ENCODE Processing Pipeline 8bd9b2db923a1e2f1e0db4d530180527 https://www.encodeproject.org/files/ENCFF898VJT/@@download/ENCFF898VJT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF459JEN bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF643CGH, ENCFF645XVN 5140656926 ENCODE Processing Pipeline 7df111287bb629b5255a75cf814619e4 https://www.encodeproject.org/files/ENCFF459JEN/@@download/ENCFF459JEN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF837OHG bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF643CGH 5536356545 ENCODE Processing Pipeline 4f906a85317d405f617df464f6df01a4 https://www.encodeproject.org/files/ENCFF837OHG/@@download/ENCFF837OHG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF788IFN bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF643CGH 6216387451 ENCODE Processing Pipeline 8c8124d093d66edcc9c319cd2defc9bb https://www.encodeproject.org/files/ENCFF788IFN/@@download/ENCFF788IFN.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF224BFU bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF643CGH 6952257157 ENCODE Processing Pipeline 963f1d263ab581902c394ccfebd1c293 https://www.encodeproject.org/files/ENCFF224BFU/@@download/ENCFF224BFU.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption ENCFF393EHE bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF643CGH, ENCFF901AEL 5013755941 ENCODE Processing Pipeline 099c368dbb3f42892ed451986321e26f https://www.encodeproject.org/files/ENCFF393EHE/@@download/ENCFF393EHE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF089XRF bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF643CGH, ENCFF705CNE 5343959597 ENCODE Processing Pipeline 49237ee5b8431878f95984a88ab73b38 https://www.encodeproject.org/files/ENCFF089XRF/@@download/ENCFF089XRF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF037KRM bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF643CGH 5771339184 ENCODE Processing Pipeline 2f77f5f608c4497306e275c68810e287 https://www.encodeproject.org/files/ENCFF037KRM/@@download/ENCFF037KRM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF163LZX bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF643CGH 5757827924 ENCODE Processing Pipeline afa38b757b464ed5b219a6f3221177a8 https://www.encodeproject.org/files/ENCFF163LZX/@@download/ENCFF163LZX.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF767FRB bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF643CGH 3312163555 ENCODE Processing Pipeline 650dd39d4bbd92eced1f9ddc310a16c6 https://www.encodeproject.org/files/ENCFF767FRB/@@download/ENCFF767FRB.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF911BGV bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF643CGH 3969987169 ENCODE Processing Pipeline c9ac0375d8ae4c525f2fbc03fd86d5b5 https://www.encodeproject.org/files/ENCFF911BGV/@@download/ENCFF911BGV.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF774XPS bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF643CGH 4653236612 ENCODE Processing Pipeline e97bde1230c59824fad36d80e8ed9adc https://www.encodeproject.org/files/ENCFF774XPS/@@download/ENCFF774XPS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF008QCI bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF643CGH, ENCFF829LEL 6873715170 ENCODE Processing Pipeline 6c2e59e7531eb2f6cf2855010f3cb22f https://www.encodeproject.org/files/ENCFF008QCI/@@download/ENCFF008QCI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF917WPY bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF643CGH, ENCFF818LOF 614082774 ENCODE Processing Pipeline d9a6392599d1acf80a3d0f63780226f7 https://www.encodeproject.org/files/ENCFF917WPY/@@download/ENCFF917WPY.bam GRCh38 released low read length, low read depth ENCFF923TDM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF643CGH 1133337509 ENCODE Processing Pipeline a8ead3cbd08baa9f992b21740271089b https://www.encodeproject.org/files/ENCFF923TDM/@@download/ENCFF923TDM.bam GRCh38 released low read length, low read depth ENCFF948DEA bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF643CGH 5621946424 ENCODE Processing Pipeline f76f2bfb06565866986d56da2a7f77ae https://www.encodeproject.org/files/ENCFF948DEA/@@download/ENCFF948DEA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF282CAW bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF643CGH, ENCFF783NLA 6753830148 ENCODE Processing Pipeline 6c4316f3fbf9dd04e3f3653385f2797f https://www.encodeproject.org/files/ENCFF282CAW/@@download/ENCFF282CAW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF509AXN bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF643CGH, ENCFF758VSS 4826283217 ENCODE Processing Pipeline 0f68f7a068ea965667cfdc56ad32ea3a https://www.encodeproject.org/files/ENCFF509AXN/@@download/ENCFF509AXN.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF983MYK bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF643CGH, ENCFF939BBH 5206593686 ENCODE Processing Pipeline 922615bedd95de22bd4482a1fdf66b40 https://www.encodeproject.org/files/ENCFF983MYK/@@download/ENCFF983MYK.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF605ZNL bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF643CGH, ENCFF850KNY 3957569881 ENCODE Processing Pipeline 2ef874152bd0951701ee039df4548c28 https://www.encodeproject.org/files/ENCFF605ZNL/@@download/ENCFF605ZNL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF347QZM bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF643CGH, ENCFF660QON 4764930964 ENCODE Processing Pipeline 91961989d5223453588ac1d161f5305e https://www.encodeproject.org/files/ENCFF347QZM/@@download/ENCFF347QZM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF466OUZ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF643CGH 788679718 ENCODE Processing Pipeline 659b4dda969294a7f711bb55bd1a979c https://www.encodeproject.org/files/ENCFF466OUZ/@@download/ENCFF466OUZ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF210QWJ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF643CGH 910031556 ENCODE Processing Pipeline 23d0663afaf6d39023044a4aeec46591 https://www.encodeproject.org/files/ENCFF210QWJ/@@download/ENCFF210QWJ.bam GRCh38 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF028BVH bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF643CGH 4696777914 ENCODE Processing Pipeline 0957739c8ed3c5e23b2857ff45d3129b https://www.encodeproject.org/files/ENCFF028BVH/@@download/ENCFF028BVH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF690XBP bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF643CGH, ENCFF991IIZ 5456741657 ENCODE Processing Pipeline d46d94651a4efa051e254fa89c9150a4 https://www.encodeproject.org/files/ENCFF690XBP/@@download/ENCFF690XBP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF542CFD bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAF, ENCFF643CGH 809415520 ENCODE Processing Pipeline 11419f32d43c7d85fc4f45221c200590 https://www.encodeproject.org/files/ENCFF542CFD/@@download/ENCFF542CFD.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF549LBG bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAE, ENCFF643CGH 881318530 ENCODE Processing Pipeline 90e1bb01336b40b6f29b826a222e38aa https://www.encodeproject.org/files/ENCFF549LBG/@@download/ENCFF549LBG.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF916TXZ bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF643CGH, ENCFF903QJF 4899062069 ENCODE Processing Pipeline 05c08d7b726c574b84d0c55daa8615a7 https://www.encodeproject.org/files/ENCFF916TXZ/@@download/ENCFF916TXZ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF210DLI bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF643CGH, ENCFF842HVL 4689867619 ENCODE Processing Pipeline 63393c4a8328e276819425d20950b548 https://www.encodeproject.org/files/ENCFF210DLI/@@download/ENCFF210DLI.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF736KZH bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF643CGH 4992588247 ENCODE Processing Pipeline a91c15ea4a014d60326397910bd618cb https://www.encodeproject.org/files/ENCFF736KZH/@@download/ENCFF736KZH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF305MVH bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF729ADA, ENCFF951MCE 5238444096 ENCODE Processing Pipeline 03cd66643ee430004b19c96f3ae4a714 https://www.encodeproject.org/files/ENCFF305MVH/@@download/ENCFF305MVH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF042XMV bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF643CGH 5799284544 ENCODE Processing Pipeline 33416991a32829c5579a88a3766c6028 https://www.encodeproject.org/files/ENCFF042XMV/@@download/ENCFF042XMV.bam GRCh38 released mild to moderate bottlenecking ENCFF003FOB bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF643CGH 6422343982 ENCODE Processing Pipeline 8a479f78c3471e07ca99a9168a057677 https://www.encodeproject.org/files/ENCFF003FOB/@@download/ENCFF003FOB.bam GRCh38 released mild to moderate bottlenecking ENCFF246DMM bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF643CGH, ENCFF830YAY 3976232014 ENCODE Processing Pipeline fbb86f2a3015ae84c99ed5762fb1a878 https://www.encodeproject.org/files/ENCFF246DMM/@@download/ENCFF246DMM.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF803XTQ bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF643CGH, ENCFF664BVY 4515144335 ENCODE Processing Pipeline 18131a62c26c2ff1468bea8426745db5 https://www.encodeproject.org/files/ENCFF803XTQ/@@download/ENCFF803XTQ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF767TEU bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF643CGH, ENCFF993JOH 5247946507 ENCODE Processing Pipeline 0394afef87e0713384b546dc5aa038ef https://www.encodeproject.org/files/ENCFF767TEU/@@download/ENCFF767TEU.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF076DBU bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF643CGH, ENCFF835JHL 5560592684 ENCODE Processing Pipeline e30650d37e0d7cd8e6ca75ffb7848164 https://www.encodeproject.org/files/ENCFF076DBU/@@download/ENCFF076DBU.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF466DPA bam alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF643CGH 2747900452 ENCODE Processing Pipeline 41293c2d2437768b176c5ee9f3e5fa5f https://www.encodeproject.org/files/ENCFF466DPA/@@download/ENCFF466DPA.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF846ILV bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF643CGH, ENCFF734ILU, ENCFF936XZX 3686801852 ENCODE Processing Pipeline 79bee442f8faadd468bb083027be6778 https://www.encodeproject.org/files/ENCFF846ILV/@@download/ENCFF846ILV.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF021UNS bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF643CGH 5206182037 ENCODE Processing Pipeline b02dc0e3a4140acbb51d6052e2207c8a https://www.encodeproject.org/files/ENCFF021UNS/@@download/ENCFF021UNS.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF132SYW bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF643CGH 3699964368 ENCODE Processing Pipeline a03a7666bc5f95de62f617d4606b321a https://www.encodeproject.org/files/ENCFF132SYW/@@download/ENCFF132SYW.bam GRCh38 released ENCFF767EZN bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF643CGH 5403186059 ENCODE Processing Pipeline 1be45fda0a273df5c36e388a6bd73521 https://www.encodeproject.org/files/ENCFF767EZN/@@download/ENCFF767EZN.bam GRCh38 released ENCFF563FZR bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF643CGH 3269628811 ENCODE Processing Pipeline 1acefed48b146bee9666e763cd9f8d7b https://www.encodeproject.org/files/ENCFF563FZR/@@download/ENCFF563FZR.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF373AFZ bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF643CGH, ENCFF959CFI 3329641808 ENCODE Processing Pipeline a363eb22f07745c63d028b3d1c792ae6 https://www.encodeproject.org/files/ENCFF373AFZ/@@download/ENCFF373AFZ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF675XCZ bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF643CGH, ENCFF993SXO 6233751083 ENCODE Processing Pipeline 3ee40534d082ebff1a12d72f612e5c59 https://www.encodeproject.org/files/ENCFF675XCZ/@@download/ENCFF675XCZ.bam GRCh38 released borderline replicate concordance ENCFF768SUF bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF643CGH 7364401453 ENCODE Processing Pipeline 871d0b767773ab387a922be1d758c3fe https://www.encodeproject.org/files/ENCFF768SUF/@@download/ENCFF768SUF.bam GRCh38 released borderline replicate concordance ENCFF364NWO bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 76 ENCFF137XSL, ENCFF643CGH 1157142826 ENCODE Processing Pipeline 21cdc2dae52f1bec7d5c227e1d4c7d46 https://www.encodeproject.org/files/ENCFF364NWO/@@download/ENCFF364NWO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF808ADX bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 76 ENCFF240SSO, ENCFF643CGH 4114422287 ENCODE Processing Pipeline 671d5b0dfdd0081e4ba7e35485443f0a https://www.encodeproject.org/files/ENCFF808ADX/@@download/ENCFF808ADX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF264FVO bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF643CGH, ENCFF695ICE, ENCFF962THE 4842801995 ENCODE Processing Pipeline fd11c96fccefa2a2735c7b07daaf04b8 https://www.encodeproject.org/files/ENCFF264FVO/@@download/ENCFF264FVO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF435APT bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF643CGH, ENCFF710WZA 4911754313 ENCODE Processing Pipeline d003a4e8a0716aa39de90c4e624da4f4 https://www.encodeproject.org/files/ENCFF435APT/@@download/ENCFF435APT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF430JGU bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF643CGH 864613783 ENCODE Processing Pipeline 4e4ec66ef696ce0c15c1bcc676ede440 https://www.encodeproject.org/files/ENCFF430JGU/@@download/ENCFF430JGU.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF347VYQ bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF967ZPY 879995232 ENCODE Processing Pipeline 0b4b519bf12c3ae8a7d9ab90b5900a12 https://www.encodeproject.org/files/ENCFF347VYQ/@@download/ENCFF347VYQ.bam GRCh38 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF193XUN bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF643CGH 4472134685 ENCODE Processing Pipeline ecdaa422cc0baf6ff258681e73aa3d34 https://www.encodeproject.org/files/ENCFF193XUN/@@download/ENCFF193XUN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF703RJE bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF643CGH, ENCFF652POL, ENCFF725NIO 3731549563 ENCODE Processing Pipeline e11245279a386c0d79ad431b31dd05a3 https://www.encodeproject.org/files/ENCFF703RJE/@@download/ENCFF703RJE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF138ZXJ bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF848FCP 1011369519 ENCODE Processing Pipeline b007bb1e2859d0fb82d7cf2e50958434 https://www.encodeproject.org/files/ENCFF138ZXJ/@@download/ENCFF138ZXJ.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF452BSY bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF643CGH 1389014998 ENCODE Processing Pipeline bb8b0d8438025413693fa9bf4028c96a https://www.encodeproject.org/files/ENCFF452BSY/@@download/ENCFF452BSY.bam GRCh38 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF539TFD bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF643CGH, ENCFF889CIT 430362376 ENCODE Processing Pipeline 5ee1b599b133c89241da620fea4be17e https://www.encodeproject.org/files/ENCFF539TFD/@@download/ENCFF539TFD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF881LTT bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF643CGH, ENCFF644FQD 400380975 ENCODE Processing Pipeline 85c5c45fdcda801aafd23a98527626ce https://www.encodeproject.org/files/ENCFF881LTT/@@download/ENCFF881LTT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155JVO bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 50 ENCFF180XGO, ENCFF643CGH, ENCFF988NSQ 1076302557 ENCODE Processing Pipeline bb5a62d5b1f0a6c6063994c0765a3e12 https://www.encodeproject.org/files/ENCFF155JVO/@@download/ENCFF155JVO.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF438XHU bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 50 ENCFF166AWJ, ENCFF358JWM, ENCFF643CGH 1289945267 ENCODE Processing Pipeline 244d6b19a8443bb3da93092846d2a888 https://www.encodeproject.org/files/ENCFF438XHU/@@download/ENCFF438XHU.bam GRCh38 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF763WJE bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF643CGH, ENCFF841ZWA 4566950992 ENCODE Processing Pipeline a4f336380b5ed901bac01fd92318a192 https://www.encodeproject.org/files/ENCFF763WJE/@@download/ENCFF763WJE.bam GRCh38 released mild to moderate bottlenecking ENCFF517RCT bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF643CGH, ENCFF800CLX 5682160469 ENCODE Processing Pipeline 0ef1ea137bbb29ccc8e1ff8f6e7bf9c5 https://www.encodeproject.org/files/ENCFF517RCT/@@download/ENCFF517RCT.bam GRCh38 released mild to moderate bottlenecking ENCFF588GTL bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF643CGH 372158885 ENCODE Processing Pipeline 4e6e402fd9cb1b4d591048fe8bac60c3 https://www.encodeproject.org/files/ENCFF588GTL/@@download/ENCFF588GTL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF760WGC bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF643CGH 413222457 ENCODE Processing Pipeline 9b206d6f7c197adc9503d117b1811538 https://www.encodeproject.org/files/ENCFF760WGC/@@download/ENCFF760WGC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF475KUF bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF643CGH, ENCFF965WYW 4775830688 ENCODE Processing Pipeline e75e2bbad05a5cca2d31c8a0acab90f2 https://www.encodeproject.org/files/ENCFF475KUF/@@download/ENCFF475KUF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF762KOL bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF643CGH 7221649582 ENCODE Processing Pipeline 08a9e290bb45e61526cf0845e2c3a1e8 https://www.encodeproject.org/files/ENCFF762KOL/@@download/ENCFF762KOL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF860ICZ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF643CGH, ENCFF741BVE 3010711139 ENCODE Processing Pipeline 401dfcf0a8a2b87044b73e103c62b290 https://www.encodeproject.org/files/ENCFF860ICZ/@@download/ENCFF860ICZ.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF556ZRU bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF643CGH 3005696308 ENCODE Processing Pipeline c5f720fd17e007a75418900b6f114302 https://www.encodeproject.org/files/ENCFF556ZRU/@@download/ENCFF556ZRU.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF857YYV bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF643CGH 4592759306 ENCODE Processing Pipeline c22d5b07b53c9cd0ea95e87f412230df https://www.encodeproject.org/files/ENCFF857YYV/@@download/ENCFF857YYV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF320WXN bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF643CGH 3484102889 ENCODE Processing Pipeline c250c488144405fe51d4ace719921dbf https://www.encodeproject.org/files/ENCFF320WXN/@@download/ENCFF320WXN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF440PPR bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF161FHO, ENCFF643CGH 539985296 ENCODE Processing Pipeline e0d055aa76a98c5ffe9848cd89e5bfa0 https://www.encodeproject.org/files/ENCFF440PPR/@@download/ENCFF440PPR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF572MUD bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF127HYV, ENCFF643CGH 401009288 ENCODE Processing Pipeline b059c4aa1df3533a20cc4e31765da0ba https://www.encodeproject.org/files/ENCFF572MUD/@@download/ENCFF572MUD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF615LVR bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 50 ENCFF643CGH, ENCFF690UNT 756800422 ENCODE Processing Pipeline 16bbd4de275c304010b5761499dc233d https://www.encodeproject.org/files/ENCFF615LVR/@@download/ENCFF615LVR.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF056OXH bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 50 ENCFF643CGH, ENCFF707YEY 1023651194 ENCODE Processing Pipeline 9b9eb61b5a9bf0a00ad2dc080da68712 https://www.encodeproject.org/files/ENCFF056OXH/@@download/ENCFF056OXH.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF933HFV bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643CGH, ENCFF643QTB 4920981163 ENCODE Processing Pipeline b413a0890b957e0dfa863ddc017a6a7a https://www.encodeproject.org/files/ENCFF933HFV/@@download/ENCFF933HFV.bam GRCh38 released mild to moderate bottlenecking ENCFF178YFO bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF643CGH 5185367825 ENCODE Processing Pipeline bb59f5e2e1695f38a5e0097f10d91fa5 https://www.encodeproject.org/files/ENCFF178YFO/@@download/ENCFF178YFO.bam GRCh38 released mild to moderate bottlenecking ENCFF948AXY bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF643CGH, ENCFF961HPB 5452672855 ENCODE Processing Pipeline 5f82b33b104d44b04c1cdb930032c0fe https://www.encodeproject.org/files/ENCFF948AXY/@@download/ENCFF948AXY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF984GJD bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF643CGH, ENCFF839AXL 5362977323 ENCODE Processing Pipeline d3924c36969ec177f246b8e4e388375c https://www.encodeproject.org/files/ENCFF984GJD/@@download/ENCFF984GJD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF126ZGI bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF643CGH, ENCFF861XPL 6062743710 ENCODE Processing Pipeline 08711de35ae04f3d9392a7e699c2fe84 https://www.encodeproject.org/files/ENCFF126ZGI/@@download/ENCFF126ZGI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF822FAY bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF643CGH, ENCFF691EHP 7408315123 ENCODE Processing Pipeline 1e90ba285cdef60ac9fe8ef178c2f765 https://www.encodeproject.org/files/ENCFF822FAY/@@download/ENCFF822FAY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF699XZD bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF643CGH, ENCFF673POI 2431108563 ENCODE Processing Pipeline 0705067d77665e3a4bed14ce3f7488fa https://www.encodeproject.org/files/ENCFF699XZD/@@download/ENCFF699XZD.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF426PKA bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF643CGH 4987203204 ENCODE Processing Pipeline 30d64440d47ac5b97966c1a8722e0570 https://www.encodeproject.org/files/ENCFF426PKA/@@download/ENCFF426PKA.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF289ROF bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF643CGH 3842928747 ENCODE Processing Pipeline 80648096a56aea952d93d8a373afdbab https://www.encodeproject.org/files/ENCFF289ROF/@@download/ENCFF289ROF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF632DBT bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF643CGH 4817694604 ENCODE Processing Pipeline f56cdef1bfc4391d3d326e428b6513ce https://www.encodeproject.org/files/ENCFF632DBT/@@download/ENCFF632DBT.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF890FEL bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF643CGH 5349778206 ENCODE Processing Pipeline d54c186f02069ebfdab805792eebcaae https://www.encodeproject.org/files/ENCFF890FEL/@@download/ENCFF890FEL.bam GRCh38 released ENCFF463YKI bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF643CGH, ENCFF746KTH, ENCFF749IGF 6228401364 ENCODE Processing Pipeline 746b005b7bbc6b94b33df309e980cee5 https://www.encodeproject.org/files/ENCFF463YKI/@@download/ENCFF463YKI.bam GRCh38 released ENCFF759UXN bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF643CGH 4562020254 ENCODE Processing Pipeline 8c5070a98a301bc9768a4c34d085ab3c https://www.encodeproject.org/files/ENCFF759UXN/@@download/ENCFF759UXN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF661VJW bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF643CGH, ENCFF926PZX 4049924478 ENCODE Processing Pipeline f57e623271336a898982c8876d493e77 https://www.encodeproject.org/files/ENCFF661VJW/@@download/ENCFF661VJW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF950PAH bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 100 ENCFF466RJA, ENCFF548XLM, ENCFF643CGH 4064900050 ENCODE Processing Pipeline c70fdd7c8e582ee8536b77cc8d866999 https://www.encodeproject.org/files/ENCFF950PAH/@@download/ENCFF950PAH.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF535SSL bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 100 ENCFF643CGH, ENCFF817VCN, ENCFF947BPK 5074239151 ENCODE Processing Pipeline 2095dee3e225513ea6f86d455075e130 https://www.encodeproject.org/files/ENCFF535SSL/@@download/ENCFF535SSL.bam GRCh38 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF769DDY bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF643CGH 3931401851 ENCODE Processing Pipeline 2505b77d11ca0befa372363d4c6f08af https://www.encodeproject.org/files/ENCFF769DDY/@@download/ENCFF769DDY.bam GRCh38 released ENCFF221CPW bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF643CGH, ENCFF664YJD 4870220233 ENCODE Processing Pipeline 2db17521cc3875be5a0f76a9f08a7a1e https://www.encodeproject.org/files/ENCFF221CPW/@@download/ENCFF221CPW.bam GRCh38 released ENCFF006EYT bam alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF643CGH, ENCFF844DFN 5050160064 ENCODE Processing Pipeline dfa6ff1f245fb358e3ddd9ad249d73b5 https://www.encodeproject.org/files/ENCFF006EYT/@@download/ENCFF006EYT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF502NAY bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF643CGH, ENCFF887TVH 3203567462 ENCODE Processing Pipeline bbda9ec8bc87ae5396fbf47bd13eba9d https://www.encodeproject.org/files/ENCFF502NAY/@@download/ENCFF502NAY.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046ACV bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF643CGH 3403164493 ENCODE Processing Pipeline 06f610e04393700af7d812a1feb2d1ca https://www.encodeproject.org/files/ENCFF046ACV/@@download/ENCFF046ACV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF527HHS bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF643CGH, ENCFF882DKX 3374876393 ENCODE Processing Pipeline 818593dfd28ef021f7dadb1941290333 https://www.encodeproject.org/files/ENCFF527HHS/@@download/ENCFF527HHS.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF975MAG bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF643CGH, ENCFF718GJY 5139985180 ENCODE Processing Pipeline ae635667fb8f6010af9226ba31e3b426 https://www.encodeproject.org/files/ENCFF975MAG/@@download/ENCFF975MAG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF122SAG bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF643CGH, ENCFF778REX 3568835673 ENCODE Processing Pipeline 284f116283b4e02bc7f29c4466983993 https://www.encodeproject.org/files/ENCFF122SAG/@@download/ENCFF122SAG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF478PNG bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF643CGH, ENCFF644SON, ENCFF693AUP 3664554817 ENCODE Processing Pipeline c6d7d654b903d441eb4eb7537af3b17d https://www.encodeproject.org/files/ENCFF478PNG/@@download/ENCFF478PNG.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF526UMU bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 40 ENCFF462CQQ, ENCFF643CGH 457080387 ENCODE Processing Pipeline 9863d53d8cae302c09c1fbfb6f9afbf9 https://www.encodeproject.org/files/ENCFF526UMU/@@download/ENCFF526UMU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF117CNE bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 40 ENCFF400OAC, ENCFF643CGH 587066461 ENCODE Processing Pipeline a5bf0f2efade8cb7c424787911088765 https://www.encodeproject.org/files/ENCFF117CNE/@@download/ENCFF117CNE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF303OPV bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF643CGH, ENCFF943NZH 3147307808 ENCODE Processing Pipeline 1b2da2ab4fa781ab2fa9a3f8aa7de966 https://www.encodeproject.org/files/ENCFF303OPV/@@download/ENCFF303OPV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF580LFA bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF643CGH 5493504422 ENCODE Processing Pipeline f09581758bc966408f0312328f7e65a3 https://www.encodeproject.org/files/ENCFF580LFA/@@download/ENCFF580LFA.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF809COT bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF645KVH 674002930 ENCODE Processing Pipeline 319c8e150536023775e68df9f19d18f6 https://www.encodeproject.org/files/ENCFF809COT/@@download/ENCFF809COT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF382RJA bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF643CGH, ENCFF960VKG 652446874 ENCODE Processing Pipeline 42ad8d34fc87a554ca177f02f080b144 https://www.encodeproject.org/files/ENCFF382RJA/@@download/ENCFF382RJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF546BUY bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 76 ENCFF371AJH, ENCFF643CGH, ENCFF855FAY 1314627296 ENCODE Processing Pipeline 5905af3d3f490580553c3a465f1acb48 https://www.encodeproject.org/files/ENCFF546BUY/@@download/ENCFF546BUY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF176KZS bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 76 ENCFF440WEY, ENCFF643CGH 1736197620 ENCODE Processing Pipeline bb2926c560a39a964325b86f64a599d3 https://www.encodeproject.org/files/ENCFF176KZS/@@download/ENCFF176KZS.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF403QBQ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF643CGH 5264434471 ENCODE Processing Pipeline 39977644b3ed494644dba98e48c97324 https://www.encodeproject.org/files/ENCFF403QBQ/@@download/ENCFF403QBQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF759BKF bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF643CGH 5418413196 ENCODE Processing Pipeline c207a77e45443349109eec9933dfd0d7 https://www.encodeproject.org/files/ENCFF759BKF/@@download/ENCFF759BKF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF907EKW bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF643CGH 5439086585 ENCODE Processing Pipeline 1ecc25389cbbbfd004846cbfcfcb9f65 https://www.encodeproject.org/files/ENCFF907EKW/@@download/ENCFF907EKW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF193QGE bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF643CGH 6228175980 ENCODE Processing Pipeline eb7152da86ddbead6f0a9d60e8530877 https://www.encodeproject.org/files/ENCFF193QGE/@@download/ENCFF193QGE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF611QGZ bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF643CGH 621608259 ENCODE Processing Pipeline f044253a1825a872e329059ea4889279 https://www.encodeproject.org/files/ENCFF611QGZ/@@download/ENCFF611QGZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF321SED bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF643CGH 605801460 ENCODE Processing Pipeline 915fe1015684e325f75ad43b777d59e4 https://www.encodeproject.org/files/ENCFF321SED/@@download/ENCFF321SED.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF682NGE bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF643CGH 410380335 ENCODE Processing Pipeline b7b209cf556b8ca51a71887dd0f337fc https://www.encodeproject.org/files/ENCFF682NGE/@@download/ENCFF682NGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF466OLG bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF983DFB 399946847 ENCODE Processing Pipeline 3fbe9a9fd1bfea580172c23ed834d21f https://www.encodeproject.org/files/ENCFF466OLG/@@download/ENCFF466OLG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF118SOA bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF643CGH 3748417070 ENCODE Processing Pipeline c49f757feeaa17d7eb54b95ec556fb3e https://www.encodeproject.org/files/ENCFF118SOA/@@download/ENCFF118SOA.bam GRCh38 released borderline replicate concordance, low read depth ENCFF357AUM bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF643CGH 5346136014 ENCODE Processing Pipeline b9b12a3c0c6bf55d78e81ca120decb25 https://www.encodeproject.org/files/ENCFF357AUM/@@download/ENCFF357AUM.bam GRCh38 released borderline replicate concordance, low read depth ENCFF996SQS bam alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF643CGH, ENCFF650USF, ENCFF837BCE 1772632481 ENCODE Processing Pipeline 87a42b6ff685434c318f0015f6cdbafb https://www.encodeproject.org/files/ENCFF996SQS/@@download/ENCFF996SQS.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF807MSB bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF643CGH 5874490254 ENCODE Processing Pipeline 1cc75dab13ed0cf6ded3c78cd0475ae5 https://www.encodeproject.org/files/ENCFF807MSB/@@download/ENCFF807MSB.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF979DTV bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF643CGH, ENCFF692YLS 6328002171 ENCODE Processing Pipeline 317988f02bb4a143805e761ddc536e7d https://www.encodeproject.org/files/ENCFF979DTV/@@download/ENCFF979DTV.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF002PPW bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF643CGH 2381016182 ENCODE Processing Pipeline 228971b7f0dcf333e82d3050197ccd1f https://www.encodeproject.org/files/ENCFF002PPW/@@download/ENCFF002PPW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF451KMO bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF643CGH 2787391511 ENCODE Processing Pipeline a1bfaf214828cd4a1011b9080d0c90e7 https://www.encodeproject.org/files/ENCFF451KMO/@@download/ENCFF451KMO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF160MJQ bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF643CGH 1672217238 ENCODE Processing Pipeline bec60f60a48b6ca87c80fb3cc62b50e0 https://www.encodeproject.org/files/ENCFF160MJQ/@@download/ENCFF160MJQ.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF624TDL bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF643CGH, ENCFF932CIF 1698867036 ENCODE Processing Pipeline 61ebc8f594ae5d041ce6b5e9ae5b8cad https://www.encodeproject.org/files/ENCFF624TDL/@@download/ENCFF624TDL.bam GRCh38 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF331BYU bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF643CGH 5774061889 ENCODE Processing Pipeline 60c9eb8335f680547c61280cecd78650 https://www.encodeproject.org/files/ENCFF331BYU/@@download/ENCFF331BYU.bam GRCh38 released borderline replicate concordance ENCFF809OVE bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF643CGH, ENCFF829YQD 5628461768 ENCODE Processing Pipeline 54b624ada36b404c5e94dd48c12b505f https://www.encodeproject.org/files/ENCFF809OVE/@@download/ENCFF809OVE.bam GRCh38 released borderline replicate concordance ENCFF641NQL bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF643CGH 918424237 ENCODE Processing Pipeline f8409b28c4d2adce858bfd685df87e95 https://www.encodeproject.org/files/ENCFF641NQL/@@download/ENCFF641NQL.bam GRCh38 released low read length, borderline replicate concordance ENCFF883UVV bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF643CGH 1061085415 ENCODE Processing Pipeline 3225fb9d10b6a58dff7953c4e1314784 https://www.encodeproject.org/files/ENCFF883UVV/@@download/ENCFF883UVV.bam GRCh38 released low read length, borderline replicate concordance ENCFF010EXG bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF643CGH 948587275 ENCODE Processing Pipeline 4f5be2535976fcf52a49145a0a327651 https://www.encodeproject.org/files/ENCFF010EXG/@@download/ENCFF010EXG.bam GRCh38 released low read length ENCFF387WOS bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF643CGH 1064498560 ENCODE Processing Pipeline aef5b949bbaff2848819b455c07a31e2 https://www.encodeproject.org/files/ENCFF387WOS/@@download/ENCFF387WOS.bam GRCh38 released low read length ENCFF497AWS bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 36 ENCFF332FPJ, ENCFF643CGH 706195109 ENCODE Processing Pipeline f71fdad515ed40a1e6854f47391020bf https://www.encodeproject.org/files/ENCFF497AWS/@@download/ENCFF497AWS.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF376TZA bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF643CGH 1391060165 ENCODE Processing Pipeline 338d78d7e7573c6c158a66114770f937 https://www.encodeproject.org/files/ENCFF376TZA/@@download/ENCFF376TZA.bam GRCh38 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF730QBB bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF643CGH, ENCFF923CFU 3818421174 ENCODE Processing Pipeline 671de85d653338959d61a53f546fe483 https://www.encodeproject.org/files/ENCFF730QBB/@@download/ENCFF730QBB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF996RPG bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF643CGH, ENCFF965LJP 3960043704 ENCODE Processing Pipeline 1a6dfc87d6cbc2aa42621b7cd371b6cf https://www.encodeproject.org/files/ENCFF996RPG/@@download/ENCFF996RPG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF377HHK bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF643CGH 4511449823 ENCODE Processing Pipeline 3c31225a5941fc176f37d5b0d4e99857 https://www.encodeproject.org/files/ENCFF377HHK/@@download/ENCFF377HHK.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF542VGH bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF643CGH 3915236882 ENCODE Processing Pipeline 52a23bb039a62f8bd24bf66778dee23d https://www.encodeproject.org/files/ENCFF542VGH/@@download/ENCFF542VGH.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF462BSP bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF643CGH 571228033 ENCODE Processing Pipeline 5e19928823a8bcc9702e3a35291c1de7 https://www.encodeproject.org/files/ENCFF462BSP/@@download/ENCFF462BSP.bam GRCh38 released low read length, low read depth ENCFF787QFQ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF643CGH 722146162 ENCODE Processing Pipeline 5824fb2f0f2085247f027ce8a4016e4f https://www.encodeproject.org/files/ENCFF787QFQ/@@download/ENCFF787QFQ.bam GRCh38 released low read length, low read depth ENCFF922DRF bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF643CGH 449587093 ENCODE Processing Pipeline ac415eff7a1918b44ef4440f810e0713 https://www.encodeproject.org/files/ENCFF922DRF/@@download/ENCFF922DRF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF978UGE bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF891ODG, ENCFF941PUJ 409970317 ENCODE Processing Pipeline 04f099e9cf78d24173e08dfa6357e44c https://www.encodeproject.org/files/ENCFF978UGE/@@download/ENCFF978UGE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF948HZE bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF643CGH 4514260906 ENCODE Processing Pipeline 6cb72b6016d7d982384f673dc48d4143 https://www.encodeproject.org/files/ENCFF948HZE/@@download/ENCFF948HZE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF888KPM bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF643CGH 6371525075 ENCODE Processing Pipeline e1cc41ab0edf0a0561070241c9a32b3d https://www.encodeproject.org/files/ENCFF888KPM/@@download/ENCFF888KPM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF178TOV bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF643CGH 555537610 ENCODE Processing Pipeline 052c6db10ba835581836ad277805ceb0 https://www.encodeproject.org/files/ENCFF178TOV/@@download/ENCFF178TOV.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF479DBP bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF643CGH, ENCFF774WWF, ENCFF915BDU 524166638 ENCODE Processing Pipeline 73c4103cd8578d4871834679076718ad https://www.encodeproject.org/files/ENCFF479DBP/@@download/ENCFF479DBP.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF233TEI bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF643CGH 4759127939 ENCODE Processing Pipeline f4ea2c41c9677cdecee2307fd580a03b https://www.encodeproject.org/files/ENCFF233TEI/@@download/ENCFF233TEI.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF059IPA bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF643CGH, ENCFF957AJG 5564730499 ENCODE Processing Pipeline 555cb8f4debce21f49f5e2e1a0fcb084 https://www.encodeproject.org/files/ENCFF059IPA/@@download/ENCFF059IPA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF356TOS bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF643CGH, ENCFF800BVA 5272129374 ENCODE Processing Pipeline 40e73876f9b689df13f1012cd74f78ff https://www.encodeproject.org/files/ENCFF356TOS/@@download/ENCFF356TOS.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF379UQD bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF643CGH 4625254808 ENCODE Processing Pipeline 7d37da662261df42881062c016104751 https://www.encodeproject.org/files/ENCFF379UQD/@@download/ENCFF379UQD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF136LTE bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF643CGH 5445945766 ENCODE Processing Pipeline 31ed5e2ef989ef1092e7914080eb79fe https://www.encodeproject.org/files/ENCFF136LTE/@@download/ENCFF136LTE.bam GRCh38 released antibody characterized with exemption ENCFF037VFP bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF643CGH 5801382821 ENCODE Processing Pipeline 17de5cceb31dba8efdd7eadd8c10ab0f https://www.encodeproject.org/files/ENCFF037VFP/@@download/ENCFF037VFP.bam GRCh38 released antibody characterized with exemption ENCFF647MYR bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF643CGH 5435791613 ENCODE Processing Pipeline a300237412101f10ae63e4b692873cd4 https://www.encodeproject.org/files/ENCFF647MYR/@@download/ENCFF647MYR.bam GRCh38 released antibody characterized with exemption ENCFF645HSB bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF643CGH 5389650278 ENCODE Processing Pipeline 4ab39071e58cbbb2dc26ac8fdc1d4c5a https://www.encodeproject.org/files/ENCFF645HSB/@@download/ENCFF645HSB.bam GRCh38 released antibody characterized with exemption ENCFF754BHC bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF643CGH, ENCFF863MQV 7619322716 ENCODE Processing Pipeline 53486943c9cd2452f412c764e9a27b56 https://www.encodeproject.org/files/ENCFF754BHC/@@download/ENCFF754BHC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF469MPJ bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF783FYL, ENCFF923XLP 6778413852 ENCODE Processing Pipeline 02511169afe25a93959844f7be551638 https://www.encodeproject.org/files/ENCFF469MPJ/@@download/ENCFF469MPJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF269EGP bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF643CGH, ENCFF655GMJ 915320513 ENCODE Processing Pipeline a7b433e1cd306ff193a87a9c9047b813 https://www.encodeproject.org/files/ENCFF269EGP/@@download/ENCFF269EGP.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF975PSG bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF643CGH 1362891560 ENCODE Processing Pipeline 022f5efa61eaa00a92224b711207ae12 https://www.encodeproject.org/files/ENCFF975PSG/@@download/ENCFF975PSG.bam GRCh38 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF928JGK bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF643CGH 3935894236 ENCODE Processing Pipeline 7ae2dc10c5beb475000008a4c3a6b322 https://www.encodeproject.org/files/ENCFF928JGK/@@download/ENCFF928JGK.bam GRCh38 released mild to moderate bottlenecking ENCFF108SDD bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF643CGH, ENCFF748SHJ 4812397502 ENCODE Processing Pipeline 8ac2a44801bcc9307696b6f7546bdd11 https://www.encodeproject.org/files/ENCFF108SDD/@@download/ENCFF108SDD.bam GRCh38 released mild to moderate bottlenecking ENCFF898MXH bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF643CGH 3865299224 ENCODE Processing Pipeline a9857bef7909e807f3f897f018ef7934 https://www.encodeproject.org/files/ENCFF898MXH/@@download/ENCFF898MXH.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF720FQJ bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF643CGH 2919683665 ENCODE Processing Pipeline 04529a55799192ea82e569eb767079c8 https://www.encodeproject.org/files/ENCFF720FQJ/@@download/ENCFF720FQJ.bam GRCh38 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF302YQK bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF643CGH 907057696 ENCODE Processing Pipeline 002cb9a381fc0d1a87ddf3a18c0d34ce https://www.encodeproject.org/files/ENCFF302YQK/@@download/ENCFF302YQK.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF185OAP bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF643CGH 879964734 ENCODE Processing Pipeline 3a5b5a876fb046bf9a2f24ccdd5e19c7 https://www.encodeproject.org/files/ENCFF185OAP/@@download/ENCFF185OAP.bam GRCh38 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF202XBB bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF643CGH, ENCFF727LRA 3828613904 ENCODE Processing Pipeline 0598f3ce9be047dcb54fdbce40347144 https://www.encodeproject.org/files/ENCFF202XBB/@@download/ENCFF202XBB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF589DKU bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF643CGH 4029008710 ENCODE Processing Pipeline f930575e5d0d8067eda8d564116b37e9 https://www.encodeproject.org/files/ENCFF589DKU/@@download/ENCFF589DKU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF569ZLS bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF643CGH, ENCFF872IMK 518712725 ENCODE Processing Pipeline c66a28f51e1a6292530578b6c2117a42 https://www.encodeproject.org/files/ENCFF569ZLS/@@download/ENCFF569ZLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF979WGI bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF643CGH 529281312 ENCODE Processing Pipeline adb191b5658a914930a9c1a699798b09 https://www.encodeproject.org/files/ENCFF979WGI/@@download/ENCFF979WGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF230PAS bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF643CGH 826526148 ENCODE Processing Pipeline 785ec71e5e9357014299d435b46c67e7 https://www.encodeproject.org/files/ENCFF230PAS/@@download/ENCFF230PAS.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF628OYH bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF643CGH 903762575 ENCODE Processing Pipeline f71e981b8d4e5c595efab56d55b542d4 https://www.encodeproject.org/files/ENCFF628OYH/@@download/ENCFF628OYH.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF572FNE bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF643CGH 4423144541 ENCODE Processing Pipeline 6e40ef6aab565fec72179dc79f874649 https://www.encodeproject.org/files/ENCFF572FNE/@@download/ENCFF572FNE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF466HSA bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF643CGH, ENCFF794VUU 5259388176 ENCODE Processing Pipeline 58b08180325172376d1b25448985bc94 https://www.encodeproject.org/files/ENCFF466HSA/@@download/ENCFF466HSA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF718POT bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF643CGH, ENCFF891VEX 473003679 ENCODE Processing Pipeline 56d12fa7b790908c9f29fa0233fab7f7 https://www.encodeproject.org/files/ENCFF718POT/@@download/ENCFF718POT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF296ZWJ bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF643CGH, ENCFF870TNG 555828893 ENCODE Processing Pipeline dc52fdd5a3e38bbf4482a0d6d39a0d34 https://www.encodeproject.org/files/ENCFF296ZWJ/@@download/ENCFF296ZWJ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF799FNR bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF643CGH, ENCFF756MPL 4876520938 ENCODE Processing Pipeline 615733282c87655a82cc6797e26079bf https://www.encodeproject.org/files/ENCFF799FNR/@@download/ENCFF799FNR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF856TBD bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF643CGH, ENCFF945QMW 5431077726 ENCODE Processing Pipeline 0f96ab1f2249e5dd4c0cbf35abeea77d https://www.encodeproject.org/files/ENCFF856TBD/@@download/ENCFF856TBD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF156XOZ bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF643CGH, ENCFF840WPW, ENCFF957HCW 545061442 ENCODE Processing Pipeline 67e5b14c34a0801d44e88c95e58f647e https://www.encodeproject.org/files/ENCFF156XOZ/@@download/ENCFF156XOZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF046DZK bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF643CGH 579847053 ENCODE Processing Pipeline 837105fd3757ce9b86e24e89a849e83b https://www.encodeproject.org/files/ENCFF046DZK/@@download/ENCFF046DZK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF918CSI bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF643CGH 829777510 ENCODE Processing Pipeline f14183f3f97b3d5125dc85ec8dd9e597 https://www.encodeproject.org/files/ENCFF918CSI/@@download/ENCFF918CSI.bam GRCh38 released low read length, borderline replicate concordance ENCFF110FDC bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF643CGH 951086608 ENCODE Processing Pipeline f60eda69d0863bbdf45bfb6d8a454051 https://www.encodeproject.org/files/ENCFF110FDC/@@download/ENCFF110FDC.bam GRCh38 released low read length, borderline replicate concordance ENCFF034KOM bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF643CGH, ENCFF746FPW, ENCFF822RJX 5280944573 ENCODE Processing Pipeline f3f54bf854f8e90ff92ddce8c60ede84 https://www.encodeproject.org/files/ENCFF034KOM/@@download/ENCFF034KOM.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF738SPX bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF643CGH 5723889400 ENCODE Processing Pipeline ad3da9fdefebdc9c8fd04f87e784f2f5 https://www.encodeproject.org/files/ENCFF738SPX/@@download/ENCFF738SPX.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF408MUN bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF643CGH 603032948 ENCODE Processing Pipeline 808c68cdead552912fca7c937b5cdaf9 https://www.encodeproject.org/files/ENCFF408MUN/@@download/ENCFF408MUN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF148NWI bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF643CGH 678786114 ENCODE Processing Pipeline 9755a2497c24e1d4d58bad54948955c5 https://www.encodeproject.org/files/ENCFF148NWI/@@download/ENCFF148NWI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF869PJB bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF643CGH, ENCFF713GZG 3367021605 ENCODE Processing Pipeline cb921f27a6f78bb38aac0c5654b65efd https://www.encodeproject.org/files/ENCFF869PJB/@@download/ENCFF869PJB.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF476WPJ bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF643CGH 3199068771 ENCODE Processing Pipeline ed3ae697d4b13b8c6ca33618f3244b4a https://www.encodeproject.org/files/ENCFF476WPJ/@@download/ENCFF476WPJ.bam GRCh38 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF250NHK bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF643CGH 5231358110 ENCODE Processing Pipeline db8e10827099716e8258dead11503780 https://www.encodeproject.org/files/ENCFF250NHK/@@download/ENCFF250NHK.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF131NUZ bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF643CGH 6704349338 ENCODE Processing Pipeline e0b6d275f3b021a3760a53e97a293510 https://www.encodeproject.org/files/ENCFF131NUZ/@@download/ENCFF131NUZ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF619XNM bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF643CGH 3972160132 ENCODE Processing Pipeline d5d8f49e3683195867c3fd38d60bc07d https://www.encodeproject.org/files/ENCFF619XNM/@@download/ENCFF619XNM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF518PQY bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF643CGH 5737080259 ENCODE Processing Pipeline 7912f4b31e53c5db0a279c12775f2c0c https://www.encodeproject.org/files/ENCFF518PQY/@@download/ENCFF518PQY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF863PZB bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF643CGH, ENCFF949NMY 4149806588 ENCODE Processing Pipeline 011e170f30f95fb88050bc1178d9380d https://www.encodeproject.org/files/ENCFF863PZB/@@download/ENCFF863PZB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF249JKL bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF643CGH, ENCFF656SJN, ENCFF871MFF 3473675770 ENCODE Processing Pipeline ab43157536fbdcef88c17e8a49e2c530 https://www.encodeproject.org/files/ENCFF249JKL/@@download/ENCFF249JKL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF998LKC bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF643CGH, ENCFF752TPO, ENCFF800WHJ 606847527 ENCODE Processing Pipeline 1ccfb6f2d2eac849524b4ff43a409d8c https://www.encodeproject.org/files/ENCFF998LKC/@@download/ENCFF998LKC.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF609FFL bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF643CGH 666187611 ENCODE Processing Pipeline c70b41ad628430b2c1c561a47a959829 https://www.encodeproject.org/files/ENCFF609FFL/@@download/ENCFF609FFL.bam GRCh38 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF728YOO bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF643CGH 548634010 ENCODE Processing Pipeline 6c895d99d1828a39da0d0bc1138e9ddc https://www.encodeproject.org/files/ENCFF728YOO/@@download/ENCFF728YOO.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF542MVV bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF643CGH, ENCFF769MBT 516520870 ENCODE Processing Pipeline e9b69a1bdb95459535d54058379d2132 https://www.encodeproject.org/files/ENCFF542MVV/@@download/ENCFF542MVV.bam GRCh38 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF088ESD bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF643CGH 370476317 ENCODE Processing Pipeline 76fe15607428d99bba9695227a3e455b https://www.encodeproject.org/files/ENCFF088ESD/@@download/ENCFF088ESD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF135FSJ bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF643CGH 454791886 ENCODE Processing Pipeline 53d6d8292af3edd95b59f7cb667cfa22 https://www.encodeproject.org/files/ENCFF135FSJ/@@download/ENCFF135FSJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF906RFX bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF643CGH 919156860 ENCODE Processing Pipeline 1deba0ae3c8a04e67ae7e2df207b87e0 https://www.encodeproject.org/files/ENCFF906RFX/@@download/ENCFF906RFX.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF666QHO bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF643CGH 1052679291 ENCODE Processing Pipeline e5dc6c328ce61ffa9f412860f112ffd4 https://www.encodeproject.org/files/ENCFF666QHO/@@download/ENCFF666QHO.bam GRCh38 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF063VDZ bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF643CGH 6206432397 ENCODE Processing Pipeline 692b24352199b43ee271db436b665b08 https://www.encodeproject.org/files/ENCFF063VDZ/@@download/ENCFF063VDZ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF046FPH bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF643CGH, ENCFF647FLX 5036177731 ENCODE Processing Pipeline 6664ca1756133be639f429072ff99743 https://www.encodeproject.org/files/ENCFF046FPH/@@download/ENCFF046FPH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF170NQD bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF643CGH 4873363589 ENCODE Processing Pipeline fd1c8bccc0467f453f122846ca72428b https://www.encodeproject.org/files/ENCFF170NQD/@@download/ENCFF170NQD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF516CKJ bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF643CGH, ENCFF884TDT, ENCFF961XAS 6235531970 ENCODE Processing Pipeline e3dbf37e27bde4e521a029985bbc9220 https://www.encodeproject.org/files/ENCFF516CKJ/@@download/ENCFF516CKJ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF833PBO bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF643CGH 6230480258 ENCODE Processing Pipeline 216e3739245a77d8c8c38c2b627973af https://www.encodeproject.org/files/ENCFF833PBO/@@download/ENCFF833PBO.bam GRCh38 released mild to moderate bottlenecking ENCFF769PJV bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF643CGH 5952870014 ENCODE Processing Pipeline bced00df2029413ceb92d863b38c427a https://www.encodeproject.org/files/ENCFF769PJV/@@download/ENCFF769PJV.bam GRCh38 released mild to moderate bottlenecking ENCFF215GEB bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF643CGH, ENCFF863JNZ 3689350877 ENCODE Processing Pipeline a3cd87e6a7c58de423f8a0563170a25a https://www.encodeproject.org/files/ENCFF215GEB/@@download/ENCFF215GEB.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF311VCV bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF643CGH, ENCFF866JOT 3746619077 ENCODE Processing Pipeline 1b45843bc56e79c6eb97856fc5d6258d https://www.encodeproject.org/files/ENCFF311VCV/@@download/ENCFF311VCV.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF121PXE bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF643CGH 905373961 ENCODE Processing Pipeline c47621804ef5a762624471228e84baba https://www.encodeproject.org/files/ENCFF121PXE/@@download/ENCFF121PXE.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF526VWA bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF643CGH 1559939865 ENCODE Processing Pipeline 96b65ae2fe194f6c5a2fcc94c34d0d00 https://www.encodeproject.org/files/ENCFF526VWA/@@download/ENCFF526VWA.bam GRCh38 released low read depth, missing genetic modification characterization ENCFF910XWG bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF643CGH, ENCFF748PBU 934006226 ENCODE Processing Pipeline 63c6ba7d00322521c73826c117813f9a https://www.encodeproject.org/files/ENCFF910XWG/@@download/ENCFF910XWG.bam GRCh38 released missing genetic modification characterization ENCFF338MSY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF643CGH, ENCFF717YOH 1321747395 ENCODE Processing Pipeline 5adc37cd22a3fc0802cc09be03eac88a https://www.encodeproject.org/files/ENCFF338MSY/@@download/ENCFF338MSY.bam GRCh38 released missing genetic modification characterization ENCFF844MJH bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF643CGH, ENCFF700HES, ENCFF766JQJ 4337313668 ENCODE Processing Pipeline 93525ccf814ca279ecc14a0b3bace6c6 https://www.encodeproject.org/files/ENCFF844MJH/@@download/ENCFF844MJH.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF044TWJ bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF643CGH, ENCFF655ZKU, ENCFF998ZXC 5475438576 ENCODE Processing Pipeline 42227a524a95d5045766fc1fa39fd4fe https://www.encodeproject.org/files/ENCFF044TWJ/@@download/ENCFF044TWJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF089WVR bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF643CGH, ENCFF945NKO 5488565425 ENCODE Processing Pipeline 270a6febd8329f762a67ac236ea9759f https://www.encodeproject.org/files/ENCFF089WVR/@@download/ENCFF089WVR.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF978XJH bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF643CGH 4593925674 ENCODE Processing Pipeline d06a0c637a94fba5ee84bfb90dd4e0cf https://www.encodeproject.org/files/ENCFF978XJH/@@download/ENCFF978XJH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF409ETZ bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF643CGH 3468948695 ENCODE Processing Pipeline 926b198de659904afdff0e8a11ea1aed https://www.encodeproject.org/files/ENCFF409ETZ/@@download/ENCFF409ETZ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF393EZW bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF643CGH 4727717391 ENCODE Processing Pipeline 9e5184d9b074ab28face9fda8ed8ed3f https://www.encodeproject.org/files/ENCFF393EZW/@@download/ENCFF393EZW.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF361WFA bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF643CGH 3820439646 ENCODE Processing Pipeline 383b36fdc3707596ede40ab0a276b4c1 https://www.encodeproject.org/files/ENCFF361WFA/@@download/ENCFF361WFA.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF086BGG bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF643CGH 3983656900 ENCODE Processing Pipeline 9e39fc3258f64c11d23c2eb742e67a8a https://www.encodeproject.org/files/ENCFF086BGG/@@download/ENCFF086BGG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF077WZY bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF643CGH, ENCFF752WRF, ENCFF761OSS 3782017955 ENCODE Processing Pipeline b614062bb3e148809baa680763191432 https://www.encodeproject.org/files/ENCFF077WZY/@@download/ENCFF077WZY.bam GRCh38 released experiment not submitted to GEO ENCFF592NKN bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF643CGH, ENCFF684YTI 6529987744 ENCODE Processing Pipeline a199dea795bb27c3beabb57321c16566 https://www.encodeproject.org/files/ENCFF592NKN/@@download/ENCFF592NKN.bam GRCh38 released experiment not submitted to GEO ENCFF229KVP bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF643CGH 4035546152 ENCODE Processing Pipeline 296d55e13a519eed688191ff10d53f4b https://www.encodeproject.org/files/ENCFF229KVP/@@download/ENCFF229KVP.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF027YWU bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF643CGH 4345762542 ENCODE Processing Pipeline 011f41e30e2387529f166b35a7ec8161 https://www.encodeproject.org/files/ENCFF027YWU/@@download/ENCFF027YWU.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF548STS bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF643CGH, ENCFF849OLW 2070136854 ENCODE Processing Pipeline 69fa08c6b6633cc677dc1909df8232c6 https://www.encodeproject.org/files/ENCFF548STS/@@download/ENCFF548STS.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360EFO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF643CGH, ENCFF881YFO 3022717486 ENCODE Processing Pipeline d1f23fd5d6b37d1afd583710831f74cd https://www.encodeproject.org/files/ENCFF360EFO/@@download/ENCFF360EFO.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF618UUW bam alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 50 ENCFF433MXK, ENCFF643CGH 914702306 ENCODE Processing Pipeline 12da53db6f6fc733860c6c6aef15ab8a https://www.encodeproject.org/files/ENCFF618UUW/@@download/ENCFF618UUW.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF998TMI bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF643CGH 3557628533 ENCODE Processing Pipeline 48562ebb234d93795e29900fed3c9254 https://www.encodeproject.org/files/ENCFF998TMI/@@download/ENCFF998TMI.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF758PTP bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF643CGH, ENCFF738QTE 3676617244 ENCODE Processing Pipeline 56cae9e7e9dd5fcafb9240cbd4aa01ff https://www.encodeproject.org/files/ENCFF758PTP/@@download/ENCFF758PTP.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF219EYD bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF643CGH, ENCFF677QBQ 3550432090 ENCODE Processing Pipeline cb45f63d75b521410ff3b09e793309c3 https://www.encodeproject.org/files/ENCFF219EYD/@@download/ENCFF219EYD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF481VHV bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF643CGH 3998197017 ENCODE Processing Pipeline e2f40332d77140646a8a60030071cbce https://www.encodeproject.org/files/ENCFF481VHV/@@download/ENCFF481VHV.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF638KFU bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF643CGH, ENCFF878ZAA 3551050507 ENCODE Processing Pipeline 9e3b3635a0c74f9ba63afb45bfdf3c6d https://www.encodeproject.org/files/ENCFF638KFU/@@download/ENCFF638KFU.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF411GKL bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF643CGH, ENCFF745JUW 6173189255 ENCODE Processing Pipeline ccf1217f2c30b7b4ce84734a30c04ed8 https://www.encodeproject.org/files/ENCFF411GKL/@@download/ENCFF411GKL.bam GRCh38 released low read depth experiment not submitted to GEO ENCFF080WKM bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 100 ENCFF233EXE, ENCFF643CGH, ENCFF708EDK 3657686210 ENCODE Processing Pipeline 6cd58c79cf1fe6a1d61bf7996be9d237 https://www.encodeproject.org/files/ENCFF080WKM/@@download/ENCFF080WKM.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF954COY bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 100 ENCFF051EDJ, ENCFF643CGH, ENCFF849GAI 5304822280 ENCODE Processing Pipeline 3cc16e63748e2c24fa1587790c489dd1 https://www.encodeproject.org/files/ENCFF954COY/@@download/ENCFF954COY.bam GRCh38 released borderline replicate concordance experiment not submitted to GEO ENCFF633BMT bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF643CGH 3556032465 ENCODE Processing Pipeline a7665c97516ffcad267afc5c84c3e174 https://www.encodeproject.org/files/ENCFF633BMT/@@download/ENCFF633BMT.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF682IXJ bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF643CGH, ENCFF964JRV 3740814766 ENCODE Processing Pipeline 90cd895b5d8d74aaf22ea0ee0b3bc784 https://www.encodeproject.org/files/ENCFF682IXJ/@@download/ENCFF682IXJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance ENCFF547YBG bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF643CGH 797254839 ENCODE Processing Pipeline 67fba9a18bb7075fd2527f65958ef049 https://www.encodeproject.org/files/ENCFF547YBG/@@download/ENCFF547YBG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF434WLM bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF643CGH 1858618147 ENCODE Processing Pipeline 151ddd88a8f88f08c0ae5f98f8861cb1 https://www.encodeproject.org/files/ENCFF434WLM/@@download/ENCFF434WLM.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF902TKE bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF643CGH, ENCFF899ZUF 4922489948 ENCODE Processing Pipeline 9b94a113d5680b6dee831b0e2ef4804b https://www.encodeproject.org/files/ENCFF902TKE/@@download/ENCFF902TKE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF738GKY bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF643CGH 4695254396 ENCODE Processing Pipeline 34385c1d034889b44a2bcd09649c289e https://www.encodeproject.org/files/ENCFF738GKY/@@download/ENCFF738GKY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF627OTJ bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF643CGH, ENCFF665UFI 4794608754 ENCODE Processing Pipeline a5a3331b1e1bc8ed9c7ef2a078cb1f8f https://www.encodeproject.org/files/ENCFF627OTJ/@@download/ENCFF627OTJ.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF807LVD bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF643CGH, ENCFF800JZM 5450899293 ENCODE Processing Pipeline 191e2287941804d2099a4db6bbcf17b3 https://www.encodeproject.org/files/ENCFF807LVD/@@download/ENCFF807LVD.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF705QJT bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF643CGH, ENCFF693QBS 2677653317 ENCODE Processing Pipeline f9f1c8de396c5524e3ff6ea86ddc6f3e https://www.encodeproject.org/files/ENCFF705QJT/@@download/ENCFF705QJT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF739NWN bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF643CGH, ENCFF841UXT 2879063235 ENCODE Processing Pipeline d71e8e159a2e067433545ef4c52e499c https://www.encodeproject.org/files/ENCFF739NWN/@@download/ENCFF739NWN.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF202NKF bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF643CGH, ENCFF795EIH 5654840369 ENCODE Processing Pipeline c89e095fc20f317aaf12634a19e88450 https://www.encodeproject.org/files/ENCFF202NKF/@@download/ENCFF202NKF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF766CMW bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF643CGH, ENCFF916UAH, ENCFF988TNQ 5107492040 ENCODE Processing Pipeline ce4a4d375dad8c799e8c5861939c09d2 https://www.encodeproject.org/files/ENCFF766CMW/@@download/ENCFF766CMW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF640XZS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF643CGH, ENCFF960TNP 4536875532 ENCODE Processing Pipeline 07771f1a5eee26aa9a47dbb006383762 https://www.encodeproject.org/files/ENCFF640XZS/@@download/ENCFF640XZS.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF943EGP bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF643CGH 5699059937 ENCODE Processing Pipeline 4f902e020fd48df020d89fd9fe990618 https://www.encodeproject.org/files/ENCFF943EGP/@@download/ENCFF943EGP.bam GRCh38 released mild to moderate bottlenecking mismatched file status ENCFF571NTO bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF643CGH, ENCFF651FCK 3553706130 ENCODE Processing Pipeline 0afd6a13bb83a443981bb59ec6f8cbe4 https://www.encodeproject.org/files/ENCFF571NTO/@@download/ENCFF571NTO.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF333OOX bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF643CGH, ENCFF688OBA 4733578141 ENCODE Processing Pipeline ee1ac351df7fde6b3a52c9d7e39df6cd https://www.encodeproject.org/files/ENCFF333OOX/@@download/ENCFF333OOX.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF898FWJ bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF643CGH 804144767 ENCODE Processing Pipeline f8c47228c93a4449dec07a2acc532370 https://www.encodeproject.org/files/ENCFF898FWJ/@@download/ENCFF898FWJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF870JSA bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF643CGH 425762134 ENCODE Processing Pipeline e58cffe80ac92b69e62ed143dad490a5 https://www.encodeproject.org/files/ENCFF870JSA/@@download/ENCFF870JSA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF049OXC bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF643CGH 759570834 ENCODE Processing Pipeline 8cc6a1993806b54c68f539bcb8c0a15f https://www.encodeproject.org/files/ENCFF049OXC/@@download/ENCFF049OXC.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF959AJO bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF643CGH 1275941725 ENCODE Processing Pipeline 08b8ca0b6ef292c4b2645cb54fbffebc https://www.encodeproject.org/files/ENCFF959AJO/@@download/ENCFF959AJO.bam GRCh38 released mild to moderate bottlenecking, low read depth ENCFF201EHN bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 76 ENCFF643CGH, ENCFF892UWM 1804072911 ENCODE Processing Pipeline 1d6eab24fb95040d8af1d60f81b27223 https://www.encodeproject.org/files/ENCFF201EHN/@@download/ENCFF201EHN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF027XHQ bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 76 ENCFF190QDZ, ENCFF643CGH 3107537607 ENCODE Processing Pipeline 0ffb2feb2a6108497bde34485ed56404 https://www.encodeproject.org/files/ENCFF027XHQ/@@download/ENCFF027XHQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF319DWE bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF643CGH, ENCFF752EVM 944157959 ENCODE Processing Pipeline 2273d16b55f1a6923973940bd14abe81 https://www.encodeproject.org/files/ENCFF319DWE/@@download/ENCFF319DWE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF628ZEN bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF643CGH 1129781542 ENCODE Processing Pipeline 90130158c0c618fc3222ee514e05b6c1 https://www.encodeproject.org/files/ENCFF628ZEN/@@download/ENCFF628ZEN.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF623PVZ bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF643CGH 408369030 ENCODE Processing Pipeline 90f97d5387748745914c1474a79e5a79 https://www.encodeproject.org/files/ENCFF623PVZ/@@download/ENCFF623PVZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF405EME bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF643CGH 718441242 ENCODE Processing Pipeline d02ed64f85f40829fcedc97b5e649267 https://www.encodeproject.org/files/ENCFF405EME/@@download/ENCFF405EME.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF600TNR bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF643CGH 659318280 ENCODE Processing Pipeline c126ef10ab0984c843064efc6ba924db https://www.encodeproject.org/files/ENCFF600TNR/@@download/ENCFF600TNR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF425MJK bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF643CGH 662948297 ENCODE Processing Pipeline deccb465d3f76ffa97c134d1644f08c4 https://www.encodeproject.org/files/ENCFF425MJK/@@download/ENCFF425MJK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF176VRR bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF643CGH 5887075918 ENCODE Processing Pipeline c35af73b9f262db5ae292f1ddbe9f669 https://www.encodeproject.org/files/ENCFF176VRR/@@download/ENCFF176VRR.bam GRCh38 released borderline replicate concordance ENCFF413GYE bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF643CGH, ENCFF931OID 6143656430 ENCODE Processing Pipeline cb78f7bc722f9a1afa8f26173f74ca04 https://www.encodeproject.org/files/ENCFF413GYE/@@download/ENCFF413GYE.bam GRCh38 released borderline replicate concordance ENCFF316LIP bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF643CGH 3519694094 ENCODE Processing Pipeline f7cd2038d34054bd35e6627a021bec98 https://www.encodeproject.org/files/ENCFF316LIP/@@download/ENCFF316LIP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF658DQE bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF643CGH, ENCFF917ZPE 5302915706 ENCODE Processing Pipeline b68a158509be936429435ba84078fe81 https://www.encodeproject.org/files/ENCFF658DQE/@@download/ENCFF658DQE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF871JNI bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF643CGH 811004341 ENCODE Processing Pipeline e23797ec4a40ab83501499716f648755 https://www.encodeproject.org/files/ENCFF871JNI/@@download/ENCFF871JNI.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF142EDR bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF643CGH 987479793 ENCODE Processing Pipeline c7476cf0de19553da0a910a6e6224299 https://www.encodeproject.org/files/ENCFF142EDR/@@download/ENCFF142EDR.bam GRCh38 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF717YUB bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF643CGH, ENCFF806WBE 3195661093 ENCODE Processing Pipeline ecd8b5f73b91a52166f6dd5a9842c416 https://www.encodeproject.org/files/ENCFF717YUB/@@download/ENCFF717YUB.bam GRCh38 released low read depth ENCFF804LEF bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF643CGH 3541160551 ENCODE Processing Pipeline d937956cf0c0dac1df6302308de3fbbb https://www.encodeproject.org/files/ENCFF804LEF/@@download/ENCFF804LEF.bam GRCh38 released low read depth ENCFF017YQM bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF643CGH, ENCFF668FXA 1879899733 ENCODE Processing Pipeline c67c59c9d2c7fd98af2eee2cf0f13e99 https://www.encodeproject.org/files/ENCFF017YQM/@@download/ENCFF017YQM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF646WFM bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF643CGH, ENCFF881GTO 1862584288 ENCODE Processing Pipeline a65d55a3f17ecabaf6c916d08f7e441f https://www.encodeproject.org/files/ENCFF646WFM/@@download/ENCFF646WFM.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF696YYU bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF643CGH, ENCFF985NRQ 1117534031 ENCODE Processing Pipeline 934b9266f79e58fa19c7b447450a2b70 https://www.encodeproject.org/files/ENCFF696YYU/@@download/ENCFF696YYU.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF833PEG bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF643CGH, ENCFF840RGL, ENCFF924MON 1797370000 ENCODE Processing Pipeline b65476850660892f2d742c211eef5e2a https://www.encodeproject.org/files/ENCFF833PEG/@@download/ENCFF833PEG.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF363YEP bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF643CGH, ENCFF960UFT 4068748596 ENCODE Processing Pipeline 088a3d6b022ea85237b253d5881b54d2 https://www.encodeproject.org/files/ENCFF363YEP/@@download/ENCFF363YEP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF744DHU bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF643CGH, ENCFF707MCD 4270601006 ENCODE Processing Pipeline 9aea46ba890a26eb76ad959ab684fa64 https://www.encodeproject.org/files/ENCFF744DHU/@@download/ENCFF744DHU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF826JBZ bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF643CGH 7638320386 ENCODE Processing Pipeline e25691148391c3a724758bc34fc192b5 https://www.encodeproject.org/files/ENCFF826JBZ/@@download/ENCFF826JBZ.bam GRCh38 released ENCFF412ASO bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF643CGH, ENCFF871PJG 8116145352 ENCODE Processing Pipeline 583b69c108fdc9660fba8e68ddc03d89 https://www.encodeproject.org/files/ENCFF412ASO/@@download/ENCFF412ASO.bam GRCh38 released ENCFF432CZZ bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF643CGH 2841467915 ENCODE Processing Pipeline 3861335f1e497873ec33b16aeca53fc3 https://www.encodeproject.org/files/ENCFF432CZZ/@@download/ENCFF432CZZ.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF381GNT bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF643CGH 3664494467 ENCODE Processing Pipeline 26181231e4de0093819b26a5d55b9a8c https://www.encodeproject.org/files/ENCFF381GNT/@@download/ENCFF381GNT.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF009XYU bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF643CGH, ENCFF743IFE 4605428207 ENCODE Processing Pipeline a40f576e082cca9d9ae660e34bf8540d https://www.encodeproject.org/files/ENCFF009XYU/@@download/ENCFF009XYU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF987ZJY bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF643CGH 4201987098 ENCODE Processing Pipeline e8bc7b23a27b61b1bc94f3767e0f1c92 https://www.encodeproject.org/files/ENCFF987ZJY/@@download/ENCFF987ZJY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF990UII bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF643CGH, ENCFF696BLE 4617345368 ENCODE Processing Pipeline d40fa05f982fdde5242bd7519e368773 https://www.encodeproject.org/files/ENCFF990UII/@@download/ENCFF990UII.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF122PNY bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF643CGH 4946567249 ENCODE Processing Pipeline 8b9f1379c35f552f5a0a6e19664c7181 https://www.encodeproject.org/files/ENCFF122PNY/@@download/ENCFF122PNY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF322EWP bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF643CGH, ENCFF671RFK, ENCFF801JGP 2273892480 ENCODE Processing Pipeline 9244e963d6c78ebe02eb72e254081412 https://www.encodeproject.org/files/ENCFF322EWP/@@download/ENCFF322EWP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF942GSX bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF643CGH 4256769454 ENCODE Processing Pipeline ac42b90471dbe223d58c8ff6e62e4557 https://www.encodeproject.org/files/ENCFF942GSX/@@download/ENCFF942GSX.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF033YTZ bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF643CGH, ENCFF940QRR 5045706945 ENCODE Processing Pipeline 0b57d8a865626acfb3e7245af015f712 https://www.encodeproject.org/files/ENCFF033YTZ/@@download/ENCFF033YTZ.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF331WMN bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF643CGH, ENCFF708AQI 6074799754 ENCODE Processing Pipeline bf3b3f49c2c4403726be2021b9761c69 https://www.encodeproject.org/files/ENCFF331WMN/@@download/ENCFF331WMN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF980DDZ bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF643CGH 4719321143 ENCODE Processing Pipeline ee85285199d385a593e0f82a244d85cf https://www.encodeproject.org/files/ENCFF980DDZ/@@download/ENCFF980DDZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF003FWA bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF643CGH, ENCFF713VLK 5643514336 ENCODE Processing Pipeline 84075435b021b055426099a2d23681ce https://www.encodeproject.org/files/ENCFF003FWA/@@download/ENCFF003FWA.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF053VFZ bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 100 ENCFF379KSR, ENCFF441WIT, ENCFF643CGH 4337112041 ENCODE Processing Pipeline b7c07f813eb938cf9efd6cdec8fbbe15 https://www.encodeproject.org/files/ENCFF053VFZ/@@download/ENCFF053VFZ.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF629WCK bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 100 ENCFF025TUY, ENCFF643CGH, ENCFF708BOT 4657991981 ENCODE Processing Pipeline 5f5381c2b38e3e71832de0b71b74562e https://www.encodeproject.org/files/ENCFF629WCK/@@download/ENCFF629WCK.bam GRCh38 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF773BVT bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 100 ENCFF019KRR, ENCFF643CGH, ENCFF690LCG 6025797328 ENCODE Processing Pipeline 6689330653f67ca3041501603fa19494 https://www.encodeproject.org/files/ENCFF773BVT/@@download/ENCFF773BVT.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF121WPI bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 100 ENCFF088UFA, ENCFF643CGH, ENCFF918XGV 6253790320 ENCODE Processing Pipeline eb4e8fb55ca4c5c2136eb38f0b06902c https://www.encodeproject.org/files/ENCFF121WPI/@@download/ENCFF121WPI.bam GRCh38 released file validation error, antibody characterized with exemption mismatched file status ENCFF332IHG bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF643CGH, ENCFF832UNH 2814608018 ENCODE Processing Pipeline f3e0e5f7cd7568c62f2f42c9582c7c05 https://www.encodeproject.org/files/ENCFF332IHG/@@download/ENCFF332IHG.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF210NGO bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF643CGH 4187753195 ENCODE Processing Pipeline 7472bd8d27a41bc3342750da3bc9f212 https://www.encodeproject.org/files/ENCFF210NGO/@@download/ENCFF210NGO.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF151ECV bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF643CGH, ENCFF972SBT 4948725912 ENCODE Processing Pipeline ce9040dc1c61bb2fa511e4721a9aea96 https://www.encodeproject.org/files/ENCFF151ECV/@@download/ENCFF151ECV.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF259ZGN bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF643CGH, ENCFF809WZP 4859696885 ENCODE Processing Pipeline 279d52bfdc82695d03b065456e7afb0f https://www.encodeproject.org/files/ENCFF259ZGN/@@download/ENCFF259ZGN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF431LTO bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF643CGH 5174099343 ENCODE Processing Pipeline c5da8f36fcc4444ec381d5149040e90d https://www.encodeproject.org/files/ENCFF431LTO/@@download/ENCFF431LTO.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF634VOX bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF643CGH, ENCFF723NCL 4700789757 ENCODE Processing Pipeline 579f54b7c66d8af6b93f60e16f34b2fe https://www.encodeproject.org/files/ENCFF634VOX/@@download/ENCFF634VOX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF479EPN bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF643CGH 4899233644 ENCODE Processing Pipeline 6ed5a077c72e8ef6bd4fa1775ff742a5 https://www.encodeproject.org/files/ENCFF479EPN/@@download/ENCFF479EPN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF875UDE bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF643CGH, ENCFF716DCY 5878915430 ENCODE Processing Pipeline b8becb3e4e310ca053581a01c4c47e88 https://www.encodeproject.org/files/ENCFF875UDE/@@download/ENCFF875UDE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF039IQB bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF643CGH 662813857 ENCODE Processing Pipeline 9d5072c810205c7756db7598fdca8b92 https://www.encodeproject.org/files/ENCFF039IQB/@@download/ENCFF039IQB.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF026TRP bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF643CGH 604512668 ENCODE Processing Pipeline 6958524e5bc835c55d6cc2c0645e51ef https://www.encodeproject.org/files/ENCFF026TRP/@@download/ENCFF026TRP.bam GRCh38 released low read length, low read depth duplicate lane review ENCFF553FEG bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF643CGH, ENCFF899JCN 4395899483 ENCODE Processing Pipeline 9144b23a4c212e7484f31e3f3ca909e7 https://www.encodeproject.org/files/ENCFF553FEG/@@download/ENCFF553FEG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF584VYO bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF643CGH, ENCFF908NRM 5237411875 ENCODE Processing Pipeline 96ed1a8f0864ce57cc4059bd049434e8 https://www.encodeproject.org/files/ENCFF584VYO/@@download/ENCFF584VYO.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF136IZY bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF643CGH, ENCFF898GAP 5074868655 ENCODE Processing Pipeline 3a0dc3e91d03aac7b73d75454638ff2b https://www.encodeproject.org/files/ENCFF136IZY/@@download/ENCFF136IZY.bam GRCh38 released mild to moderate bottlenecking ENCFF406CYG bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF643CGH 4098592530 ENCODE Processing Pipeline 788f639e395ec596772ddb979a8acfd3 https://www.encodeproject.org/files/ENCFF406CYG/@@download/ENCFF406CYG.bam GRCh38 released mild to moderate bottlenecking ENCFF629HGO bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF643CGH, ENCFF678IIJ 651557502 ENCODE Processing Pipeline af6c2c49b6124a6764179a1dd35e5bf7 https://www.encodeproject.org/files/ENCFF629HGO/@@download/ENCFF629HGO.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF123TRE bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF643CGH 2466480317 ENCODE Processing Pipeline bf147cef618909a9946581bc83697b86 https://www.encodeproject.org/files/ENCFF123TRE/@@download/ENCFF123TRE.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF495OAG bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF643CGH, ENCFF858GIB, ENCFF950MHM 4467101054 ENCODE Processing Pipeline 30e68c671f86b8f064cbb082a24c0449 https://www.encodeproject.org/files/ENCFF495OAG/@@download/ENCFF495OAG.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF447CUQ bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF643CGH, ENCFF857ZPD 7452990700 ENCODE Processing Pipeline e25648cc64cb0a39558a81c67031617b https://www.encodeproject.org/files/ENCFF447CUQ/@@download/ENCFF447CUQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF223SSU bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF643CGH 5018690995 ENCODE Processing Pipeline b6d5656d17e264666828bb26b2776748 https://www.encodeproject.org/files/ENCFF223SSU/@@download/ENCFF223SSU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF267HWD bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF643CGH 4927482246 ENCODE Processing Pipeline af69b75e60c70bfe03601ce19486b8b4 https://www.encodeproject.org/files/ENCFF267HWD/@@download/ENCFF267HWD.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF702WHX bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF643CGH 3014585643 ENCODE Processing Pipeline a30014b6c0bfdbf98db757d796412f93 https://www.encodeproject.org/files/ENCFF702WHX/@@download/ENCFF702WHX.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF795OAZ bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF643CGH 4600461119 ENCODE Processing Pipeline 4bc2d9772a809a74c5d729cf060ed5ad https://www.encodeproject.org/files/ENCFF795OAZ/@@download/ENCFF795OAZ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF727SXP bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF643CGH 5062018711 ENCODE Processing Pipeline 90d5f12dbaff3ad4896c050d6aae5e3f https://www.encodeproject.org/files/ENCFF727SXP/@@download/ENCFF727SXP.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF624RUU bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF643CGH 5895638962 ENCODE Processing Pipeline bc0a082b4613a7794fed4a4bc88e0c7d https://www.encodeproject.org/files/ENCFF624RUU/@@download/ENCFF624RUU.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF235FDS bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF643CGH 2689562996 ENCODE Processing Pipeline 6209e97f13ec8e6e1ed96567890030b4 https://www.encodeproject.org/files/ENCFF235FDS/@@download/ENCFF235FDS.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF714EVJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF643CGH 2906408455 ENCODE Processing Pipeline 50e031970fd49dfbb9c302f3b7414343 https://www.encodeproject.org/files/ENCFF714EVJ/@@download/ENCFF714EVJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF147OUB bam redacted alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF643CGH, ENCFF885MZT 596820774 ENCODE Processing Pipeline d14a6332800d470b6a5d907b504ace8e https://www.encodeproject.org/files/ENCFF147OUB/@@download/ENCFF147OUB.bam GRCh38 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF662RWY bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF643CGH 4836207801 ENCODE Processing Pipeline 52e6fe53136109bd40efa398da391d68 https://www.encodeproject.org/files/ENCFF662RWY/@@download/ENCFF662RWY.bam GRCh38 released ENCFF069WYM bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF643CGH 6946154476 ENCODE Processing Pipeline fc7be24e5be0168ad7993bb9ce1b3785 https://www.encodeproject.org/files/ENCFF069WYM/@@download/ENCFF069WYM.bam GRCh38 released ENCFF125NKO bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF643CGH 1072167387 ENCODE Processing Pipeline b1bdf4a5a0603909309f12116b221f32 https://www.encodeproject.org/files/ENCFF125NKO/@@download/ENCFF125NKO.bam GRCh38 released low read length ENCFF459UCK bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF643CGH 930763912 ENCODE Processing Pipeline f0f0ef4df6cff1cb6c9e45f78ff61a82 https://www.encodeproject.org/files/ENCFF459UCK/@@download/ENCFF459UCK.bam GRCh38 released low read length ENCFF757GXN bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF643CGH 532705308 ENCODE Processing Pipeline 12b77821e48c829b663128beed965e5f https://www.encodeproject.org/files/ENCFF757GXN/@@download/ENCFF757GXN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF826GGN bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF643CGH 728549072 ENCODE Processing Pipeline 9699a4e5bc489e34049166345cbfec9d https://www.encodeproject.org/files/ENCFF826GGN/@@download/ENCFF826GGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF570MLW bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF643CGH, ENCFF862EVT, ENCFF917SHU 4665229534 ENCODE Processing Pipeline 99b25e66471fc6509004321c0d2517ac https://www.encodeproject.org/files/ENCFF570MLW/@@download/ENCFF570MLW.bam GRCh38 released ENCFF524WHV bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF643CGH, ENCFF974DWD 5251949049 ENCODE Processing Pipeline c4b9898d7e403d490b19d7a6038b989a https://www.encodeproject.org/files/ENCFF524WHV/@@download/ENCFF524WHV.bam GRCh38 released ENCFF886NRG bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF643CGH, ENCFF790RTP 4474269761 ENCODE Processing Pipeline 65b778621dc6b0fe302ef0d962fd6a54 https://www.encodeproject.org/files/ENCFF886NRG/@@download/ENCFF886NRG.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF344TIM bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF643CGH, ENCFF701UNE 4581009061 ENCODE Processing Pipeline a9c5daf3e547a69c8c10b5a91bb75e75 https://www.encodeproject.org/files/ENCFF344TIM/@@download/ENCFF344TIM.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF772TIS bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF643CGH, ENCFF917UJR 798571846 ENCODE Processing Pipeline 68a052ceee75d699134e18bf5c2834e9 https://www.encodeproject.org/files/ENCFF772TIS/@@download/ENCFF772TIS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF796NNU bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF643CGH 702789134 ENCODE Processing Pipeline 7b3de3f2f16c2233ba3f486f1aa27e7f https://www.encodeproject.org/files/ENCFF796NNU/@@download/ENCFF796NNU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF342NOF bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF643CGH, ENCFF936RHD 4586094941 ENCODE Processing Pipeline 3f46eb594f954e4a89a234499bbc9862 https://www.encodeproject.org/files/ENCFF342NOF/@@download/ENCFF342NOF.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF521XIN bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF643CGH, ENCFF909UDE 4780204390 ENCODE Processing Pipeline eebafe71d0bce5e7003462851f4a459c https://www.encodeproject.org/files/ENCFF521XIN/@@download/ENCFF521XIN.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF866YKI bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF643CGH, ENCFF712JVW 1256771969 ENCODE Processing Pipeline c10c75287d44ab6928acb73a02e54df0 https://www.encodeproject.org/files/ENCFF866YKI/@@download/ENCFF866YKI.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF263YXM bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF643CGH 1418118129 ENCODE Processing Pipeline 55b3b2e528149af0922c86aed0d3a8ba https://www.encodeproject.org/files/ENCFF263YXM/@@download/ENCFF263YXM.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF363YKW bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF643CGH 970248899 ENCODE Processing Pipeline c14853318a55d2b3eb71326faad9076f https://www.encodeproject.org/files/ENCFF363YKW/@@download/ENCFF363YKW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF473NMO bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF643CGH 1375839326 ENCODE Processing Pipeline 89582cb16309704f069e342171333ee9 https://www.encodeproject.org/files/ENCFF473NMO/@@download/ENCFF473NMO.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF645RWA bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF643CGH 527847825 ENCODE Processing Pipeline 820f487652c693befbce97a1a5849fb4 https://www.encodeproject.org/files/ENCFF645RWA/@@download/ENCFF645RWA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF178ZLZ bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF643CGH 731573956 ENCODE Processing Pipeline 3c61b4fa870f6363f153cf5d690ad778 https://www.encodeproject.org/files/ENCFF178ZLZ/@@download/ENCFF178ZLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF150FTW bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF643CGH 4060870584 ENCODE Processing Pipeline b3ea052db5cb911d0d2ae7a479a4235a https://www.encodeproject.org/files/ENCFF150FTW/@@download/ENCFF150FTW.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF769IMV bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF643CGH 8384333821 ENCODE Processing Pipeline e8c885736e16133381d8ab1ac3d542a7 https://www.encodeproject.org/files/ENCFF769IMV/@@download/ENCFF769IMV.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF409DHW bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF643CGH, ENCFF936JQM 5637347650 ENCODE Processing Pipeline 687bdd7e1e1118983bc6097347c93633 https://www.encodeproject.org/files/ENCFF409DHW/@@download/ENCFF409DHW.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF181QKX bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF643CGH, ENCFF689RWF 10054522230 ENCODE Processing Pipeline 5c36c30221e1f1484bb5655c33e1e36a https://www.encodeproject.org/files/ENCFF181QKX/@@download/ENCFF181QKX.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF872NJT bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF643CGH, ENCFF948IGU 1303725632 ENCODE Processing Pipeline 836fea98dd9ad4461b9e2a7c5032f6a7 https://www.encodeproject.org/files/ENCFF872NJT/@@download/ENCFF872NJT.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF158EVG bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF643CGH 1243907432 ENCODE Processing Pipeline 267ba9d41c57ad72643183f89582a6e4 https://www.encodeproject.org/files/ENCFF158EVG/@@download/ENCFF158EVG.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF318TPO bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF643CGH, ENCFF665GYY 5442478333 ENCODE Processing Pipeline 4417ce45111097d7a2dff2642f08da6f https://www.encodeproject.org/files/ENCFF318TPO/@@download/ENCFF318TPO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF100KZW bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF643CGH, ENCFF795PET 5691810636 ENCODE Processing Pipeline 119b5747f34156e335fa2f1b59c5a398 https://www.encodeproject.org/files/ENCFF100KZW/@@download/ENCFF100KZW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF356BYE bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF643CGH, ENCFF822VOO 3508195908 ENCODE Processing Pipeline b7a4c443b7de336acd607460f97ef983 https://www.encodeproject.org/files/ENCFF356BYE/@@download/ENCFF356BYE.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF021VLL bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF643CGH, ENCFF943CAF 3571652453 ENCODE Processing Pipeline f34c7303c29a5a5f7a6236d5b160b80a https://www.encodeproject.org/files/ENCFF021VLL/@@download/ENCFF021VLL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF184EQF bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF643CGH, ENCFF804SDU, ENCFF841EZY 4558041911 ENCODE Processing Pipeline 3b7a77028176251c14244005c077fae9 https://www.encodeproject.org/files/ENCFF184EQF/@@download/ENCFF184EQF.bam GRCh38 released ENCFF520GWV bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF643CGH, ENCFF653KYN 5096913202 ENCODE Processing Pipeline 16c3b4c5f9b2231f0ed15945f0af258d https://www.encodeproject.org/files/ENCFF520GWV/@@download/ENCFF520GWV.bam GRCh38 released ENCFF687TGC bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF643CGH 5857433687 ENCODE Processing Pipeline 7ad906af1f88fe0b664488d0f0f3c641 https://www.encodeproject.org/files/ENCFF687TGC/@@download/ENCFF687TGC.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF205IQB bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF643CGH, ENCFF964ENU 6604808076 ENCODE Processing Pipeline de35fb5813dca95c1dde49e45b750618 https://www.encodeproject.org/files/ENCFF205IQB/@@download/ENCFF205IQB.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF442WFR bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF643CGH, ENCFF904VSC 3860159616 ENCODE Processing Pipeline 66d2e2035dd01a99fa75f7b0c3fcbfd0 https://www.encodeproject.org/files/ENCFF442WFR/@@download/ENCFF442WFR.bam GRCh38 released ENCFF023VUT bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF643CGH 4863125242 ENCODE Processing Pipeline 7b8c7ddc9c807e8ec52500c863f8f0c7 https://www.encodeproject.org/files/ENCFF023VUT/@@download/ENCFF023VUT.bam GRCh38 released ENCFF365DEP bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF643CGH 3888210921 ENCODE Processing Pipeline f7c8f4fc82f5f2d04983da3d1247730e https://www.encodeproject.org/files/ENCFF365DEP/@@download/ENCFF365DEP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF281AZD bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF643CGH 7366352344 ENCODE Processing Pipeline a27cb4f3a9f397438a504942fb900b9b https://www.encodeproject.org/files/ENCFF281AZD/@@download/ENCFF281AZD.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF803ZFE bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF643CGH 5278565887 ENCODE Processing Pipeline 398c3331574d5c37ab2f195dd63b8d53 https://www.encodeproject.org/files/ENCFF803ZFE/@@download/ENCFF803ZFE.bam GRCh38 released mild to moderate bottlenecking ENCFF299JYS bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF643CGH 6521678934 ENCODE Processing Pipeline 62c4b0b5b84403b3472bc4d954202599 https://www.encodeproject.org/files/ENCFF299JYS/@@download/ENCFF299JYS.bam GRCh38 released mild to moderate bottlenecking ENCFF989MGN bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF643CGH 6595650339 ENCODE Processing Pipeline 8ecbfcb82febc2c8d0c553c5e8a1ab78 https://www.encodeproject.org/files/ENCFF989MGN/@@download/ENCFF989MGN.bam GRCh38 released ENCFF967SQJ bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF643CGH, ENCFF753IGR 6611625912 ENCODE Processing Pipeline 2940efba1c87409fda7d5478d3632558 https://www.encodeproject.org/files/ENCFF967SQJ/@@download/ENCFF967SQJ.bam GRCh38 released ENCFF149UBZ bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF643CGH 3155474389 ENCODE Processing Pipeline 75ce2c6d774648de9b0ebf2e329cb83e https://www.encodeproject.org/files/ENCFF149UBZ/@@download/ENCFF149UBZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF844RRZ bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF643CGH 3937274789 ENCODE Processing Pipeline 90f99f769b4ae0e1d0f57921e7ecd513 https://www.encodeproject.org/files/ENCFF844RRZ/@@download/ENCFF844RRZ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF635IJT bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF643CGH 373074765 ENCODE Processing Pipeline f14e66b64817219c6d3943de662030c7 https://www.encodeproject.org/files/ENCFF635IJT/@@download/ENCFF635IJT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF121RZC bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF643CGH 405226122 ENCODE Processing Pipeline 75a23455307c858ff3dbcbec82b13efe https://www.encodeproject.org/files/ENCFF121RZC/@@download/ENCFF121RZC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF818IAY bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF643CGH, ENCFF855LGC 6772740203 ENCODE Processing Pipeline 8e2f1d2f3b4e7ea2640a01a0ce41020d https://www.encodeproject.org/files/ENCFF818IAY/@@download/ENCFF818IAY.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF050ZWL bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF643CGH, ENCFF933FSS 8321947431 ENCODE Processing Pipeline 47488c38b672ad7395144f4fa572ae8a https://www.encodeproject.org/files/ENCFF050ZWL/@@download/ENCFF050ZWL.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF663TTK bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF643CGH, ENCFF944NFT 2465642890 ENCODE Processing Pipeline 96864a8eca478122f15bfa328e71ed68 https://www.encodeproject.org/files/ENCFF663TTK/@@download/ENCFF663TTK.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF603XMK bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF643CGH 5749734821 ENCODE Processing Pipeline fc56355e44dd01ce7bd91837a58c5300 https://www.encodeproject.org/files/ENCFF603XMK/@@download/ENCFF603XMK.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF358SSM bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF643CGH 3287600249 ENCODE Processing Pipeline 0470c97946bea35dbbbfd42b68f36c14 https://www.encodeproject.org/files/ENCFF358SSM/@@download/ENCFF358SSM.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF405YCF bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF643CGH 3135017651 ENCODE Processing Pipeline 52da047f4e217c9718fcec9a4439a2a3 https://www.encodeproject.org/files/ENCFF405YCF/@@download/ENCFF405YCF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF285HJN bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF643CGH, ENCFF671BGZ 1747536992 ENCODE Processing Pipeline 2f4e2f24d84aadf6b29e9edd46d03aec https://www.encodeproject.org/files/ENCFF285HJN/@@download/ENCFF285HJN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF232KLY bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF643CGH 1641139028 ENCODE Processing Pipeline b400c4668e55cad178d5b47eb61c5aff https://www.encodeproject.org/files/ENCFF232KLY/@@download/ENCFF232KLY.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF425FSK bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF643CGH 210995610 ENCODE Processing Pipeline 31e609780d8b4c2d7a456e1d5818a461 https://www.encodeproject.org/files/ENCFF425FSK/@@download/ENCFF425FSK.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF582LPW bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF643CGH 295221415 ENCODE Processing Pipeline 8d408f44ec95c35ee6e7edf8df7fa6a3 https://www.encodeproject.org/files/ENCFF582LPW/@@download/ENCFF582LPW.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF592CBW bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF643CGH, ENCFF684UVH 4397087284 ENCODE Processing Pipeline d794289cca7d48b3ac46003c64dba2d2 https://www.encodeproject.org/files/ENCFF592CBW/@@download/ENCFF592CBW.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF688KOP bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF643CGH, ENCFF691JKH 5652570111 ENCODE Processing Pipeline 0866e74813a29ccfe661ff791fb5529f https://www.encodeproject.org/files/ENCFF688KOP/@@download/ENCFF688KOP.bam GRCh38 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF782XEN bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF643CGH 926648813 ENCODE Processing Pipeline 12c5b111013b5dc0039999aeafcb76be https://www.encodeproject.org/files/ENCFF782XEN/@@download/ENCFF782XEN.bam GRCh38 released low read length, antibody characterized with exemption ENCFF341ZOE bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF643CGH 931325843 ENCODE Processing Pipeline 8166bce87f67d3f468aa62f1ac53d0d2 https://www.encodeproject.org/files/ENCFF341ZOE/@@download/ENCFF341ZOE.bam GRCh38 released low read length, antibody characterized with exemption ENCFF691KNW bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF643CGH 3845232246 ENCODE Processing Pipeline 6a9d4b79d8fc8ae8df9a295254dc95a8 https://www.encodeproject.org/files/ENCFF691KNW/@@download/ENCFF691KNW.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF867NYN bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF643CGH, ENCFF815AHV 5261326314 ENCODE Processing Pipeline 0110d76a19ff972837aa0f86103dbe84 https://www.encodeproject.org/files/ENCFF867NYN/@@download/ENCFF867NYN.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF127DUL bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF643CGH 4084005060 ENCODE Processing Pipeline 91716453291d0d38fe33f7040d054838 https://www.encodeproject.org/files/ENCFF127DUL/@@download/ENCFF127DUL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF759RDL bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF643CGH, ENCFF946JCU 3618041259 ENCODE Processing Pipeline d1eff2eed57e78d07426ff12741ef7ba https://www.encodeproject.org/files/ENCFF759RDL/@@download/ENCFF759RDL.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF516AEF bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF643CGH 5421081030 ENCODE Processing Pipeline 2b1074d573ea71dbacfae99d6bde8517 https://www.encodeproject.org/files/ENCFF516AEF/@@download/ENCFF516AEF.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF420RDM bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF643CGH 7250367106 ENCODE Processing Pipeline bed6881d176e2f00c91d8b40d33505d7 https://www.encodeproject.org/files/ENCFF420RDM/@@download/ENCFF420RDM.bam GRCh38 released experiment not submitted to GEO partially characterized antibody ENCFF023LTK bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF768RZW, ENCFF779JEY 3503752979 ENCODE Processing Pipeline 954069b1efd8d057366236ab60dc950b https://www.encodeproject.org/files/ENCFF023LTK/@@download/ENCFF023LTK.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF649JMD bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF643CGH, ENCFF952XTB 4524321768 ENCODE Processing Pipeline e833f2e5a52e1648ca28c16a3a2c2d0f https://www.encodeproject.org/files/ENCFF649JMD/@@download/ENCFF649JMD.bam GRCh38 released low read depth, missing genetic modification characterization missing control alignments ENCFF454HMH bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF643CGH, ENCFF858BWH 4517920138 ENCODE Processing Pipeline bda3b50907ccb3bd28705929d12940c0 https://www.encodeproject.org/files/ENCFF454HMH/@@download/ENCFF454HMH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF990BCT bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF643CGH 5275811469 ENCODE Processing Pipeline a09f69e77cb86fbe0fd51bc8aed1e5cf https://www.encodeproject.org/files/ENCFF990BCT/@@download/ENCFF990BCT.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF353RVO bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF643CGH, ENCFF706OYX, ENCFF754UWT 5028084865 ENCODE Processing Pipeline 1b28733a7cd5f8111283387b5cc39783 https://www.encodeproject.org/files/ENCFF353RVO/@@download/ENCFF353RVO.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF342AFE bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF643CGH 4582401070 ENCODE Processing Pipeline 89fd057b921d72e314dd1475474a7ec7 https://www.encodeproject.org/files/ENCFF342AFE/@@download/ENCFF342AFE.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF076IGY bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF643CGH, ENCFF986WDC 4884300367 ENCODE Processing Pipeline e2e651858e7183151203735c8a806c71 https://www.encodeproject.org/files/ENCFF076IGY/@@download/ENCFF076IGY.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF131UWG bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF643CGH 6292929572 ENCODE Processing Pipeline 4c5a20e545ccf7ca89405198c314a66f https://www.encodeproject.org/files/ENCFF131UWG/@@download/ENCFF131UWG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF803MUP bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 76 ENCFF643CGH, ENCFF855LSJ, ENCFF983UPK 4302449535 ENCODE Processing Pipeline b0ae470af5e71b1a0b04ed9ff7fc7fc3 https://www.encodeproject.org/files/ENCFF803MUP/@@download/ENCFF803MUP.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF053VXH bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 76 ENCFF601GHH, ENCFF643CGH, ENCFF733LFK 1374200489 ENCODE Processing Pipeline d28410cc4f350053139e1969d281aeae https://www.encodeproject.org/files/ENCFF053VXH/@@download/ENCFF053VXH.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF729SHE bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF357EHL, ENCFF603IPW, ENCFF643CGH 3903325338 ENCODE Processing Pipeline 6c2f0ecaa15c642486c05bfb9d208a04 https://www.encodeproject.org/files/ENCFF729SHE/@@download/ENCFF729SHE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF044YLT bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 76 ENCFF264DQN, ENCFF643CGH, ENCFF775QDK 3659017765 ENCODE Processing Pipeline 53ab2dbc1f83cf92931286898548131e https://www.encodeproject.org/files/ENCFF044YLT/@@download/ENCFF044YLT.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF787ONF bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF183BQH, ENCFF643CGH 448713954 ENCODE Processing Pipeline 05fc97a60e52d05a3f5b706bd2b4474e https://www.encodeproject.org/files/ENCFF787ONF/@@download/ENCFF787ONF.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF228GPF bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF136VQP, ENCFF643CGH 511628537 ENCODE Processing Pipeline 03bab60039a1bb85a101987960cf8a95 https://www.encodeproject.org/files/ENCFF228GPF/@@download/ENCFF228GPF.bam GRCh38 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF709KRI bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF895HBS 1126521415 ENCODE Processing Pipeline 7f46888b0ebdf63bdff3765cb6bb5de7 https://www.encodeproject.org/files/ENCFF709KRI/@@download/ENCFF709KRI.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF617NGF bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF958ONK 1169491373 ENCODE Processing Pipeline 8f494c97b8868853d546698c54be8988 https://www.encodeproject.org/files/ENCFF617NGF/@@download/ENCFF617NGF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF379WXQ bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF643CGH 1964365443 ENCODE Processing Pipeline 897379ece4377cc5c7f5ad5e41cde6d9 https://www.encodeproject.org/files/ENCFF379WXQ/@@download/ENCFF379WXQ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF049VHY bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF643CGH 2238105928 ENCODE Processing Pipeline f302e429e508eb8d4fc8570f1801555c https://www.encodeproject.org/files/ENCFF049VHY/@@download/ENCFF049VHY.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF808EIJ bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF643CGH 732508195 ENCODE Processing Pipeline dc27eb0f24db584a24896f6b46d1d41b https://www.encodeproject.org/files/ENCFF808EIJ/@@download/ENCFF808EIJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF040MDB bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF643CGH 649598840 ENCODE Processing Pipeline d8f5d5dc5c04abc6ba65f1812e647159 https://www.encodeproject.org/files/ENCFF040MDB/@@download/ENCFF040MDB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF872UEY bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF643CGH 1240977271 ENCODE Processing Pipeline c71bdb9fb79bf8a7bc097d77a7839d84 https://www.encodeproject.org/files/ENCFF872UEY/@@download/ENCFF872UEY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF965BTP bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF643CGH 1018502603 ENCODE Processing Pipeline fda6cdc351a62472b555a992fd602428 https://www.encodeproject.org/files/ENCFF965BTP/@@download/ENCFF965BTP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF090KCF bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF643CGH 485444606 ENCODE Processing Pipeline 14ceb896698acb080ae68657fb9ccf7d https://www.encodeproject.org/files/ENCFF090KCF/@@download/ENCFF090KCF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF499BWX bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF643CGH 370360688 ENCODE Processing Pipeline 4ab2f03fdc22038436427caf2d233175 https://www.encodeproject.org/files/ENCFF499BWX/@@download/ENCFF499BWX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF432KDE bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF643CGH 587624345 ENCODE Processing Pipeline 83353cb14ef5ed7590bb03fdf694855d https://www.encodeproject.org/files/ENCFF432KDE/@@download/ENCFF432KDE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF004PAV bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF643CGH 665357834 ENCODE Processing Pipeline 5bba72717136ba0787037aebd79baf51 https://www.encodeproject.org/files/ENCFF004PAV/@@download/ENCFF004PAV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF777WTW bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF482UZA, ENCFF643CGH 1418310341 ENCODE Processing Pipeline f9753fef863e3af6907d637f1fe22d60 https://www.encodeproject.org/files/ENCFF777WTW/@@download/ENCFF777WTW.bam GRCh38 released ENCFF878AOT bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF587OYH, ENCFF643CGH 4157302810 ENCODE Processing Pipeline 2ffb2b523290454fe6e8a1b3b4b945f4 https://www.encodeproject.org/files/ENCFF878AOT/@@download/ENCFF878AOT.bam GRCh38 released ENCFF535ZUV bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF121HEJ, ENCFF643CGH 879204161 ENCODE Processing Pipeline dd61232ec39775266446a284366c5069 https://www.encodeproject.org/files/ENCFF535ZUV/@@download/ENCFF535ZUV.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF967QJQ bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF892BYO 2102948248 ENCODE Processing Pipeline db2c96b930e1e7a25625087be9c789a7 https://www.encodeproject.org/files/ENCFF967QJQ/@@download/ENCFF967QJQ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF659WLX bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF883YYR 1268081125 ENCODE Processing Pipeline d72a276819e3572c505191621d0f498e https://www.encodeproject.org/files/ENCFF659WLX/@@download/ENCFF659WLX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF497DEZ bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF564QJZ, ENCFF643CGH 1995268656 ENCODE Processing Pipeline 269831ad8106e0dc0fc2e3bee1385fb6 https://www.encodeproject.org/files/ENCFF497DEZ/@@download/ENCFF497DEZ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF465ZPQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF379ZPU, ENCFF643CGH 1151670716 ENCODE Processing Pipeline b1ed6d3b88ae5bd9fc09e70c56fc1a6f https://www.encodeproject.org/files/ENCFF465ZPQ/@@download/ENCFF465ZPQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF009WRQ bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF002XBK, ENCFF643CGH 1050161016 ENCODE Processing Pipeline 98efca49ee786c5f38b4b45f4f9716aa https://www.encodeproject.org/files/ENCFF009WRQ/@@download/ENCFF009WRQ.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF273SBT bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 50 ENCFF108ORY, ENCFF643CGH 1090637105 ENCODE Processing Pipeline 1c8b6d10ef1a9e49eb50ce678c2da845 https://www.encodeproject.org/files/ENCFF273SBT/@@download/ENCFF273SBT.bam GRCh38 released antibody characterized with exemption ENCFF140CDB bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF780YNX 1203809176 ENCODE Processing Pipeline 386fa2f8e0c65c5a1e08c894f9a017dc https://www.encodeproject.org/files/ENCFF140CDB/@@download/ENCFF140CDB.bam GRCh38 released antibody characterized with exemption ENCFF271AMR bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF643CGH, ENCFF895OQI 4235669788 ENCODE Processing Pipeline cd8a7680f94de5ff0592d1677376682b https://www.encodeproject.org/files/ENCFF271AMR/@@download/ENCFF271AMR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF284OXU bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF643CGH 4697535281 ENCODE Processing Pipeline 429c070e3cb6992c047c27a7644d0aee https://www.encodeproject.org/files/ENCFF284OXU/@@download/ENCFF284OXU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity ENCFF535MRQ bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF643CGH 495850682 ENCODE Processing Pipeline ef7eb0a73ab049d454a98943e887b8c6 https://www.encodeproject.org/files/ENCFF535MRQ/@@download/ENCFF535MRQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF396STC bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF643CGH 588813898 ENCODE Processing Pipeline 263dc36d2363aaa5699fa49ae0bdb064 https://www.encodeproject.org/files/ENCFF396STC/@@download/ENCFF396STC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF523VQN bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF643CGH 1270246654 ENCODE Processing Pipeline 06408f1dbf90cdf9d12c63377621124d https://www.encodeproject.org/files/ENCFF523VQN/@@download/ENCFF523VQN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404YMM bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF643CGH 1464823134 ENCODE Processing Pipeline 927b077f4503207ea493e150497ed1bb https://www.encodeproject.org/files/ENCFF404YMM/@@download/ENCFF404YMM.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF886GDS bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF643CGH 272007123 ENCODE Processing Pipeline ecce6a4f4f267379ca9acd7e84cd5816 https://www.encodeproject.org/files/ENCFF886GDS/@@download/ENCFF886GDS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF724XQV bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF643CGH 467106189 ENCODE Processing Pipeline 4ef5b5f887933b2928f5210a33e0f82b https://www.encodeproject.org/files/ENCFF724XQV/@@download/ENCFF724XQV.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF843KIR bam alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF643CGH 1051670560 ENCODE Processing Pipeline 9191d9bd5f7a4e51fcf6234b53e6cd0d https://www.encodeproject.org/files/ENCFF843KIR/@@download/ENCFF843KIR.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF580OKG bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF257STC, ENCFF643CGH 1054928606 ENCODE Processing Pipeline 14eede3f54e49837739c22e21578a05c https://www.encodeproject.org/files/ENCFF580OKG/@@download/ENCFF580OKG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF804DKC bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF643CGH, ENCFF777KUN 992851318 ENCODE Processing Pipeline fea45a0da633dc0f7c213ee93efcad78 https://www.encodeproject.org/files/ENCFF804DKC/@@download/ENCFF804DKC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF525RIY bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF604CSF, ENCFF643CGH, ENCFF863ZBO 4282305199 ENCODE Processing Pipeline da8c9747fef8865b44391338f4cbccb7 https://www.encodeproject.org/files/ENCFF525RIY/@@download/ENCFF525RIY.bam GRCh38 released borderline replicate concordance ENCFF167ASQ bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF215BOJ, ENCFF416JNG, ENCFF643CGH 6505906079 ENCODE Processing Pipeline 15d9075c416c3a9bc3d214181b05e5da https://www.encodeproject.org/files/ENCFF167ASQ/@@download/ENCFF167ASQ.bam GRCh38 released borderline replicate concordance ENCFF914XSR bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF162GLI, ENCFF643CGH 1101700934 ENCODE Processing Pipeline 0c53905205ecf3be47bc41f40f0c8c4d https://www.encodeproject.org/files/ENCFF914XSR/@@download/ENCFF914XSR.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF970XFN bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF643CGH, ENCFF658DDY 936723023 ENCODE Processing Pipeline 7da6c0a793cee1ab387f89d1e0fa491e https://www.encodeproject.org/files/ENCFF970XFN/@@download/ENCFF970XFN.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF444CNM bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF643CGH 656567955 ENCODE Processing Pipeline e00bc8a55047ddc2f5b0487bf63b9c3e https://www.encodeproject.org/files/ENCFF444CNM/@@download/ENCFF444CNM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF960YUK bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF643CGH 956507218 ENCODE Processing Pipeline aa7999402d824e6de82c0161d9442299 https://www.encodeproject.org/files/ENCFF960YUK/@@download/ENCFF960YUK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF291HCN bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF643CGH 336124221 ENCODE Processing Pipeline da613b772e26ecca16e74dc8f0c60bfe https://www.encodeproject.org/files/ENCFF291HCN/@@download/ENCFF291HCN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF118APQ bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF643CGH 384416668 ENCODE Processing Pipeline 610c80e508d915144b200065061f85d4 https://www.encodeproject.org/files/ENCFF118APQ/@@download/ENCFF118APQ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF036WJL bam alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF643CGH, ENCFF972WGI 4318880241 ENCODE Processing Pipeline 0deb28e3e87c05e904a45e8fcb2951a2 https://www.encodeproject.org/files/ENCFF036WJL/@@download/ENCFF036WJL.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF283SLJ bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF643CGH 4237264705 ENCODE Processing Pipeline 1c8c1f77c1637fef241c47349b381fb9 https://www.encodeproject.org/files/ENCFF283SLJ/@@download/ENCFF283SLJ.bam GRCh38 released antibody characterized with exemption ENCFF532BVM bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF643CGH, ENCFF873EXA 4877994385 ENCODE Processing Pipeline efb8f102591f29526010a5e03796abfd https://www.encodeproject.org/files/ENCFF532BVM/@@download/ENCFF532BVM.bam GRCh38 released antibody characterized with exemption ENCFF740ULF bam alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF643CGH, ENCFF763EWZ, ENCFF828DEK 2007246811 ENCODE Processing Pipeline f6023e9a4776494f95faa165206eb3e2 https://www.encodeproject.org/files/ENCFF740ULF/@@download/ENCFF740ULF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF637GAD bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF643CGH, ENCFF724GZW 528757694 ENCODE Processing Pipeline d5c7822819bafe93278a550c7f2d03d8 https://www.encodeproject.org/files/ENCFF637GAD/@@download/ENCFF637GAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF741WVA bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF643CGH 553854464 ENCODE Processing Pipeline 140fdcc3ba66ecde6aee8090949d1bda https://www.encodeproject.org/files/ENCFF741WVA/@@download/ENCFF741WVA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF238NNG bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF643CGH 310275520 ENCODE Processing Pipeline 7599dcd4abaf09cb6ffedc43703a36c7 https://www.encodeproject.org/files/ENCFF238NNG/@@download/ENCFF238NNG.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF725DLZ bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF643CGH 599962686 ENCODE Processing Pipeline 5f82c1cb2947b17272ec39b3c5bbaead https://www.encodeproject.org/files/ENCFF725DLZ/@@download/ENCFF725DLZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF685SJB bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF062BQQ, ENCFF643CGH 759159862 ENCODE Processing Pipeline 5bad32810afaaf8d00bcd7c6e6d7f716 https://www.encodeproject.org/files/ENCFF685SJB/@@download/ENCFF685SJB.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF961XMG bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF319DTT, ENCFF643CGH 4265049255 ENCODE Processing Pipeline e27a9e3cddddd20de857f448d9c85c7a https://www.encodeproject.org/files/ENCFF961XMG/@@download/ENCFF961XMG.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF059NNP bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF643CGH 3781275125 ENCODE Processing Pipeline 0864d365af2b053081e646a5d3013290 https://www.encodeproject.org/files/ENCFF059NNP/@@download/ENCFF059NNP.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF221GWS bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF643CGH 3946453394 ENCODE Processing Pipeline 9f4ad88565dc7f0df264e0c0dcbae598 https://www.encodeproject.org/files/ENCFF221GWS/@@download/ENCFF221GWS.bam GRCh38 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF290MEZ bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF643CGH 780462628 ENCODE Processing Pipeline 03c6e84f5dde18a33ac814c70c0f8494 https://www.encodeproject.org/files/ENCFF290MEZ/@@download/ENCFF290MEZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF544ZPF bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF643CGH 1258971772 ENCODE Processing Pipeline add3eee9dea099401f10347bdb3be49a https://www.encodeproject.org/files/ENCFF544ZPF/@@download/ENCFF544ZPF.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF962EFL bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF643CGH, ENCFF662WYC 4807030027 ENCODE Processing Pipeline 115c7dd84ad21b55ee4969d4e9ee1cb1 https://www.encodeproject.org/files/ENCFF962EFL/@@download/ENCFF962EFL.bam GRCh38 released ENCFF338ZSU bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF643CGH, ENCFF815CWB 4693758444 ENCODE Processing Pipeline 44969661ab10e6dd8e992fc712c23c0f https://www.encodeproject.org/files/ENCFF338ZSU/@@download/ENCFF338ZSU.bam GRCh38 released ENCFF097RWA bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF643CGH 2742967428 ENCODE Processing Pipeline 9e535d4956272409985d81f234bdd140 https://www.encodeproject.org/files/ENCFF097RWA/@@download/ENCFF097RWA.bam GRCh38 released low read depth ENCFF324WPH bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF643CGH, ENCFF693IXS, ENCFF720JCW 5102031974 ENCODE Processing Pipeline 5ac57fc0b19106e2efe5a2a5c3856435 https://www.encodeproject.org/files/ENCFF324WPH/@@download/ENCFF324WPH.bam GRCh38 released low read depth ENCFF726UVN bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF643CGH 638436900 ENCODE Processing Pipeline f51fd5cc0da310594840dc873e12145e https://www.encodeproject.org/files/ENCFF726UVN/@@download/ENCFF726UVN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF388QNA bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF643CGH 719748956 ENCODE Processing Pipeline 69af2d10c943203020cf5e5c401fc963 https://www.encodeproject.org/files/ENCFF388QNA/@@download/ENCFF388QNA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803OPC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF643CGH 480760362 ENCODE Processing Pipeline 5cc256bc0c4076fe55898fb6520882ae https://www.encodeproject.org/files/ENCFF803OPC/@@download/ENCFF803OPC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF515QUC bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF643CGH 612143328 ENCODE Processing Pipeline 9c2d6e3684543b10a9e284e1062b6f6a https://www.encodeproject.org/files/ENCFF515QUC/@@download/ENCFF515QUC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF089JIC bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF643CGH 186470025 ENCODE Processing Pipeline 7c10ea44ed47bb0c47334d1c8bd75412 https://www.encodeproject.org/files/ENCFF089JIC/@@download/ENCFF089JIC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF445ONF bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF643CGH 929183097 ENCODE Processing Pipeline aea0061108efa217a4245095fc978e5e https://www.encodeproject.org/files/ENCFF445ONF/@@download/ENCFF445ONF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF887OBL bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF643CGH 887469491 ENCODE Processing Pipeline a40936bbf06fd5147cee95edab2f33e5 https://www.encodeproject.org/files/ENCFF887OBL/@@download/ENCFF887OBL.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF313TEK bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF643CGH 976394281 ENCODE Processing Pipeline aeb1d0a2a0b03c75ccf363930b5d15a3 https://www.encodeproject.org/files/ENCFF313TEK/@@download/ENCFF313TEK.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF774ZQG bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF643CGH 1095549613 ENCODE Processing Pipeline 86d2ca6a2a586ab99cb3726a9fcabfa7 https://www.encodeproject.org/files/ENCFF774ZQG/@@download/ENCFF774ZQG.bam GRCh38 released low read length biological replicates with identical biosample ENCFF637ZXE bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF643CGH 1168817433 ENCODE Processing Pipeline 783d70c576a8f1e349abe69371f6c75b https://www.encodeproject.org/files/ENCFF637ZXE/@@download/ENCFF637ZXE.bam GRCh38 released low read length biological replicates with identical biosample ENCFF720GUI bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF643CGH 542036942 ENCODE Processing Pipeline f599df455cbaac28ee866ec76efcc91c https://www.encodeproject.org/files/ENCFF720GUI/@@download/ENCFF720GUI.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF477ASU bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF643CGH 915799145 ENCODE Processing Pipeline b29ba958dd09e74c20c8fc8e665cdc46 https://www.encodeproject.org/files/ENCFF477ASU/@@download/ENCFF477ASU.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF503VEU bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF643CGH 703537687 ENCODE Processing Pipeline 2cd71a51dd65dda1975ea442f9677ccc https://www.encodeproject.org/files/ENCFF503VEU/@@download/ENCFF503VEU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF705LAV bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF643CGH 874003462 ENCODE Processing Pipeline 25b69ee762216788c6f726ab9d6a86e7 https://www.encodeproject.org/files/ENCFF705LAV/@@download/ENCFF705LAV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF115QJZ bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF643CGH 537599378 ENCODE Processing Pipeline c04fe97b252da2db51b6c088ed56a343 https://www.encodeproject.org/files/ENCFF115QJZ/@@download/ENCFF115QJZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF208QQC bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF643CGH 715525529 ENCODE Processing Pipeline aafc554388b6c01715591fdcc650249e https://www.encodeproject.org/files/ENCFF208QQC/@@download/ENCFF208QQC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF247ZIP bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF643CGH 484647113 ENCODE Processing Pipeline 4872d18fcbbce241e2f0184b659fead7 https://www.encodeproject.org/files/ENCFF247ZIP/@@download/ENCFF247ZIP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF705JKT bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF643CGH 723512027 ENCODE Processing Pipeline de0bdba2a70055ce27567726ac1f5144 https://www.encodeproject.org/files/ENCFF705JKT/@@download/ENCFF705JKT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF185SAW bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF643CGH 655572924 ENCODE Processing Pipeline f363e85f6efd27fc979241ad64bf54e1 https://www.encodeproject.org/files/ENCFF185SAW/@@download/ENCFF185SAW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF140VTG bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF643CGH 756551127 ENCODE Processing Pipeline 884ab40b7a624235a7024c7c89b6caae https://www.encodeproject.org/files/ENCFF140VTG/@@download/ENCFF140VTG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF491DUD bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF643CGH 838143169 ENCODE Processing Pipeline 68835c98d12bf80ca87aceae4ea715d6 https://www.encodeproject.org/files/ENCFF491DUD/@@download/ENCFF491DUD.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF112WHF bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF643CGH 834158636 ENCODE Processing Pipeline 737a77a7329a778a1db4508694816d23 https://www.encodeproject.org/files/ENCFF112WHF/@@download/ENCFF112WHF.bam GRCh38 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF198RTF bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF643CGH 1065977334 ENCODE Processing Pipeline 5e98e891be510094f52f76644ba9dd2d https://www.encodeproject.org/files/ENCFF198RTF/@@download/ENCFF198RTF.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF187ZET bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF643CGH 1442824719 ENCODE Processing Pipeline d56c9d197ccfb5bcb1bd72ded2c2a63b https://www.encodeproject.org/files/ENCFF187ZET/@@download/ENCFF187ZET.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF690YWW bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF643CGH 805892387 ENCODE Processing Pipeline 470483e22f92c6455252fb4238cf48c6 https://www.encodeproject.org/files/ENCFF690YWW/@@download/ENCFF690YWW.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF180ZQP bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF643CGH, ENCFF718QVM 1433047478 ENCODE Processing Pipeline e073eb1b6460a8cb31b1d3e8b779cda8 https://www.encodeproject.org/files/ENCFF180ZQP/@@download/ENCFF180ZQP.bam GRCh38 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF972SQO bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF643CGH 350529840 ENCODE Processing Pipeline f85f3cdc35482e6e53d5d25d074cc1ad https://www.encodeproject.org/files/ENCFF972SQO/@@download/ENCFF972SQO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF489EBO bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF643CGH 770713385 ENCODE Processing Pipeline e6587ac13aa2670108dccd41c1bf49d9 https://www.encodeproject.org/files/ENCFF489EBO/@@download/ENCFF489EBO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF676ZPL bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF643CGH 185921131 ENCODE Processing Pipeline c8a09c4350d34f253dd4fec119fa47d0 https://www.encodeproject.org/files/ENCFF676ZPL/@@download/ENCFF676ZPL.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF853IGP bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF643CGH 214856369 ENCODE Processing Pipeline 4c555a242281f30fc61309746f0d7f44 https://www.encodeproject.org/files/ENCFF853IGP/@@download/ENCFF853IGP.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF182YDN bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF643CGH 2596971810 ENCODE Processing Pipeline 9e3bd36662d9581688b4594fa27080e8 https://www.encodeproject.org/files/ENCFF182YDN/@@download/ENCFF182YDN.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF855NIZ bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF643CGH, ENCFF749GVI, ENCFF888ZYM 3336748137 ENCODE Processing Pipeline 54497eff2b2f3f2561a7eaa4001371ac https://www.encodeproject.org/files/ENCFF855NIZ/@@download/ENCFF855NIZ.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF081LPR bam alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF643CGH, ENCFF843LGK 4131443483 ENCODE Processing Pipeline 955f1f8b26de209c9c8305c180020230 https://www.encodeproject.org/files/ENCFF081LPR/@@download/ENCFF081LPR.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF168TBA bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF643CGH, ENCFF809ISJ 3279239092 ENCODE Processing Pipeline d8a518c944e9b4c56bf622212025506e https://www.encodeproject.org/files/ENCFF168TBA/@@download/ENCFF168TBA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF024NZQ bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF643CGH 3534393611 ENCODE Processing Pipeline f467791454257e40643a1ecdd0ba3cf1 https://www.encodeproject.org/files/ENCFF024NZQ/@@download/ENCFF024NZQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF048YPV bam alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF643CGH 2538607746 ENCODE Processing Pipeline 94043d4486dc397eb79c83eb681105b9 https://www.encodeproject.org/files/ENCFF048YPV/@@download/ENCFF048YPV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF375RFW bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF643CGH, ENCFF891KUP, ENCFF964ODQ 6167043970 ENCODE Processing Pipeline 9a2ef1390fa88dab082ce5336aa5bcd4 https://www.encodeproject.org/files/ENCFF375RFW/@@download/ENCFF375RFW.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF706RWY bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF643CGH, ENCFF890MKU 7139336063 ENCODE Processing Pipeline 88810d374387a6228d330700a55f9e03 https://www.encodeproject.org/files/ENCFF706RWY/@@download/ENCFF706RWY.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF755QDV bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZV, ENCFF643CGH 812020974 ENCODE Processing Pipeline af7927210b39c407dd93f971b561803f https://www.encodeproject.org/files/ENCFF755QDV/@@download/ENCFF755QDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF853NYR bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002DZU, ENCFF643CGH 746916317 ENCODE Processing Pipeline 546e9cd1784b17fcc116ecf9fe96952b https://www.encodeproject.org/files/ENCFF853NYR/@@download/ENCFF853NYR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF976EMR bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF643CGH 288154540 ENCODE Processing Pipeline ea410e5c8524596d8ac34259ab1a7bf5 https://www.encodeproject.org/files/ENCFF976EMR/@@download/ENCFF976EMR.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF323MTY bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF643CGH 294153029 ENCODE Processing Pipeline a09dff64d09b96bb734781c57e0b8346 https://www.encodeproject.org/files/ENCFF323MTY/@@download/ENCFF323MTY.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF513UKV bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF643CGH, ENCFF824XIN 2456554174 ENCODE Processing Pipeline 7ab7426fb9bc30485ca7189470720f53 https://www.encodeproject.org/files/ENCFF513UKV/@@download/ENCFF513UKV.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF054NSG bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF643CGH 2522154208 ENCODE Processing Pipeline e07e0e417c9d72d6cd7c2003393757d9 https://www.encodeproject.org/files/ENCFF054NSG/@@download/ENCFF054NSG.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF488UTP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF643CGH 294183826 ENCODE Processing Pipeline 956fbb715ae034e32517219907b21b33 https://www.encodeproject.org/files/ENCFF488UTP/@@download/ENCFF488UTP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF227WBP bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF643CGH 568731531 ENCODE Processing Pipeline e20f34788a79aa28efaa021ee8846b26 https://www.encodeproject.org/files/ENCFF227WBP/@@download/ENCFF227WBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF978NVP bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF643CGH, ENCFF772FZX 2956929565 ENCODE Processing Pipeline 6fb467814d689848536386e13bdd4c89 https://www.encodeproject.org/files/ENCFF978NVP/@@download/ENCFF978NVP.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF606IOS bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF643CGH 3716858972 ENCODE Processing Pipeline a83de8b84accdca907a0e96e12719965 https://www.encodeproject.org/files/ENCFF606IOS/@@download/ENCFF606IOS.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF942JER bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF643CGH 591404416 ENCODE Processing Pipeline a9c685372416fddf26c354053db3d295 https://www.encodeproject.org/files/ENCFF942JER/@@download/ENCFF942JER.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF428QRM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF643CGH 555873426 ENCODE Processing Pipeline a57dfb67c40acc7b2990e1f6952ebc40 https://www.encodeproject.org/files/ENCFF428QRM/@@download/ENCFF428QRM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF191KBY bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF643CGH 797442901 ENCODE Processing Pipeline e83739cf741f7c44f5cdfc7964f078b0 https://www.encodeproject.org/files/ENCFF191KBY/@@download/ENCFF191KBY.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF519GHQ bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF643CGH 1572684629 ENCODE Processing Pipeline 5c87a0d9ab2bf70430b3ca5ad39ed9e1 https://www.encodeproject.org/files/ENCFF519GHQ/@@download/ENCFF519GHQ.bam GRCh38 released control low read depth, low read depth, missing genetic modification characterization ENCFF229CPP bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF643CGH, ENCFF829DHH, ENCFF937AKL 1510757725 ENCODE Processing Pipeline 34e391fd4b5510a57df1811e99f768bb https://www.encodeproject.org/files/ENCFF229CPP/@@download/ENCFF229CPP.bam GRCh38 released missing genetic modification characterization ENCFF857SEI bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF643CGH, ENCFF705GVK 1104102087 ENCODE Processing Pipeline bc121b385b8db6f691c71d1e94d16a45 https://www.encodeproject.org/files/ENCFF857SEI/@@download/ENCFF857SEI.bam GRCh38 released missing genetic modification characterization ENCFF681JLI bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF730DID, ENCFF907WUT 3524857162 ENCODE Processing Pipeline 5f9eea0b7f045370b7a0d5a6e4afb60b https://www.encodeproject.org/files/ENCFF681JLI/@@download/ENCFF681JLI.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF897GZC bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF643CGH 3396784223 ENCODE Processing Pipeline 5ebbc02ac8317ee2d1ced8e7a92f3cfb https://www.encodeproject.org/files/ENCFF897GZC/@@download/ENCFF897GZC.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF987AWV bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF643CGH 598478181 ENCODE Processing Pipeline 80ef58f0340a09b52d379e67844dba27 https://www.encodeproject.org/files/ENCFF987AWV/@@download/ENCFF987AWV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF910NHM bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF643CGH 613920078 ENCODE Processing Pipeline 7b9f20635061509c606876f023a38641 https://www.encodeproject.org/files/ENCFF910NHM/@@download/ENCFF910NHM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF221DPL bam alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF643CGH, ENCFF827MSA 2934061274 ENCODE Processing Pipeline bce53914fc31275242e15ff84760932e https://www.encodeproject.org/files/ENCFF221DPL/@@download/ENCFF221DPL.bam GRCh38 released antibody characterized with exemption ENCFF381YPW bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF643CGH 4442095368 ENCODE Processing Pipeline 2f6c801e89561030f4cc3584125d84f3 https://www.encodeproject.org/files/ENCFF381YPW/@@download/ENCFF381YPW.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF929VDB bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF643CGH, ENCFF723BUN 4395082919 ENCODE Processing Pipeline f796cede153d136a593c4ab006cb4ada https://www.encodeproject.org/files/ENCFF929VDB/@@download/ENCFF929VDB.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF418NDO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF643CGH 734328978 ENCODE Processing Pipeline 24ff006ae8b04a65da3529f958c75f12 https://www.encodeproject.org/files/ENCFF418NDO/@@download/ENCFF418NDO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF036AWP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF643CGH 755210701 ENCODE Processing Pipeline cbb8035725332d14c6dfd204116a12e3 https://www.encodeproject.org/files/ENCFF036AWP/@@download/ENCFF036AWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF754IAO bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF643CGH 521927877 ENCODE Processing Pipeline 56811148b6a3928fc3a97f7b12132cc2 https://www.encodeproject.org/files/ENCFF754IAO/@@download/ENCFF754IAO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF355WAL bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF643CGH 460086995 ENCODE Processing Pipeline cf5aade4337ccd52d4fb38fc3311a281 https://www.encodeproject.org/files/ENCFF355WAL/@@download/ENCFF355WAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF451VMR bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF643CGH 691394215 ENCODE Processing Pipeline 04423f9255f4ee04ec17dc81a638772c https://www.encodeproject.org/files/ENCFF451VMR/@@download/ENCFF451VMR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF628GCY bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF643CGH 840296577 ENCODE Processing Pipeline 0c45327919d1f716c077262b1a8944d1 https://www.encodeproject.org/files/ENCFF628GCY/@@download/ENCFF628GCY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282WQV bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF643CGH 526502388 ENCODE Processing Pipeline 808f3dac635e97508f2d8c6e7c4395a9 https://www.encodeproject.org/files/ENCFF282WQV/@@download/ENCFF282WQV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF836ZOB bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF643CGH 478243744 ENCODE Processing Pipeline ecab631c0ef46e50c34961541cc1817f https://www.encodeproject.org/files/ENCFF836ZOB/@@download/ENCFF836ZOB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF355PQK bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF643CGH 358269351 ENCODE Processing Pipeline c701136f2a96b9dbc346fd11939c841e https://www.encodeproject.org/files/ENCFF355PQK/@@download/ENCFF355PQK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF365BCR bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF643CGH 443640502 ENCODE Processing Pipeline a48aa486a33c1344117443ac715c76ab https://www.encodeproject.org/files/ENCFF365BCR/@@download/ENCFF365BCR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF229VMU bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF643CGH 4744141691 ENCODE Processing Pipeline 9acc50e697b2451285f72e63758232c7 https://www.encodeproject.org/files/ENCFF229VMU/@@download/ENCFF229VMU.bam GRCh38 released low read depth ENCFF802CIM bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF643CGH, ENCFF672NIZ 3709998175 ENCODE Processing Pipeline a2b95e968a163c517143752817db5f75 https://www.encodeproject.org/files/ENCFF802CIM/@@download/ENCFF802CIM.bam GRCh38 released low read depth ENCFF350FCE bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF643CGH, ENCFF793GYQ 3574860575 ENCODE Processing Pipeline 121823fa155c51433f0af9d15ca3db89 https://www.encodeproject.org/files/ENCFF350FCE/@@download/ENCFF350FCE.bam GRCh38 released ENCFF744TCZ bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF643CGH, ENCFF670FTR 4680689869 ENCODE Processing Pipeline f85e9ee671c58d74bf83425fd2668a08 https://www.encodeproject.org/files/ENCFF744TCZ/@@download/ENCFF744TCZ.bam GRCh38 released ENCFF472PUP bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF643CGH 879838417 ENCODE Processing Pipeline 629952675ff346be0404ea2567878de5 https://www.encodeproject.org/files/ENCFF472PUP/@@download/ENCFF472PUP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF526MVX bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF643CGH 928524859 ENCODE Processing Pipeline e452267040fae26297878173e7136660 https://www.encodeproject.org/files/ENCFF526MVX/@@download/ENCFF526MVX.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF056EFI bam alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF644NPE, ENCFF794FMB 2915783236 ENCODE Processing Pipeline 42e91758087fcc38e1ebcf5524641847 https://www.encodeproject.org/files/ENCFF056EFI/@@download/ENCFF056EFI.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF263NOT bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF643CGH 630867459 ENCODE Processing Pipeline d11c04ad0ebf411ae606a5f1dff97188 https://www.encodeproject.org/files/ENCFF263NOT/@@download/ENCFF263NOT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF731ZNW bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF643CGH 693781453 ENCODE Processing Pipeline 8af589ba02fdb061cd605c19ae3330d5 https://www.encodeproject.org/files/ENCFF731ZNW/@@download/ENCFF731ZNW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF294UTM bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF643CGH 3846528508 ENCODE Processing Pipeline 5a7301cf90baee3667d053624e9987e7 https://www.encodeproject.org/files/ENCFF294UTM/@@download/ENCFF294UTM.bam GRCh38 released mild to moderate bottlenecking ENCFF387BDW bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF643CGH, ENCFF668WFT 3822377080 ENCODE Processing Pipeline 78d515ea9cc89fc2ae3a9de068f4cb5c https://www.encodeproject.org/files/ENCFF387BDW/@@download/ENCFF387BDW.bam GRCh38 released mild to moderate bottlenecking ENCFF765ZZI bam alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF643CGH, ENCFF918QWX 3463742759 ENCODE Processing Pipeline 33a031f9e4fc24960f20622adbd23a14 https://www.encodeproject.org/files/ENCFF765ZZI/@@download/ENCFF765ZZI.bam GRCh38 released antibody characterized with exemption ENCFF134KPW bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF643CGH 527112547 ENCODE Processing Pipeline a74a3ca3e3749050dc5e042686bb3e9c https://www.encodeproject.org/files/ENCFF134KPW/@@download/ENCFF134KPW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF699JHR bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF643CGH 913589274 ENCODE Processing Pipeline 245047ba5fa5fc9393fe202d297299f1 https://www.encodeproject.org/files/ENCFF699JHR/@@download/ENCFF699JHR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF332SRJ bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF643CGH 323539184 ENCODE Processing Pipeline 1cae7a37ca9ff7a26c0c5835c1bda9c6 https://www.encodeproject.org/files/ENCFF332SRJ/@@download/ENCFF332SRJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF401YVR bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF643CGH 528614038 ENCODE Processing Pipeline 5d0b8377cad4fc8793ff3e9e4627e437 https://www.encodeproject.org/files/ENCFF401YVR/@@download/ENCFF401YVR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF199XSZ bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF643CGH 483143173 ENCODE Processing Pipeline 54a74f7d8a47a7edf8b7f78c64ecd1e1 https://www.encodeproject.org/files/ENCFF199XSZ/@@download/ENCFF199XSZ.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF485BYB bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF643CGH 616534131 ENCODE Processing Pipeline ba6995285912c14b840233c95a6b2024 https://www.encodeproject.org/files/ENCFF485BYB/@@download/ENCFF485BYB.bam GRCh38 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF116ICU bam alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF643CGH 729448148 ENCODE Processing Pipeline 622f8ad99e0d5feb75064dccd13d5174 https://www.encodeproject.org/files/ENCFF116ICU/@@download/ENCFF116ICU.bam GRCh38 released low read length, low read depth ENCFF510YAI bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF643CGH 287797489 ENCODE Processing Pipeline 002600767b501270177d2fd821d863db https://www.encodeproject.org/files/ENCFF510YAI/@@download/ENCFF510YAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF476CBG bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF643CGH 412043094 ENCODE Processing Pipeline d048bf26f111ee7328da127541ae1f38 https://www.encodeproject.org/files/ENCFF476CBG/@@download/ENCFF476CBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF167ZAW bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF643CGH 507564616 ENCODE Processing Pipeline c06f8ab3d520166b50e0fb60905dfecc https://www.encodeproject.org/files/ENCFF167ZAW/@@download/ENCFF167ZAW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF948DOF bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF643CGH 1076708084 ENCODE Processing Pipeline 2162c858f2bdbe6d452ff3368bb5eae2 https://www.encodeproject.org/files/ENCFF948DOF/@@download/ENCFF948DOF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF056XVW bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF643CGH 944413952 ENCODE Processing Pipeline e8e474b3e5144239c8a2669d2b083269 https://www.encodeproject.org/files/ENCFF056XVW/@@download/ENCFF056XVW.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF540SXT bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF643CGH 1198353720 ENCODE Processing Pipeline aa3a1b13fc69355779aaf4d83bc1d5f6 https://www.encodeproject.org/files/ENCFF540SXT/@@download/ENCFF540SXT.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF615CWW bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF643CGH 227693827 ENCODE Processing Pipeline fe3edd370506bb8060935638d2472ab7 https://www.encodeproject.org/files/ENCFF615CWW/@@download/ENCFF615CWW.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF940QAP bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF643CGH 339891114 ENCODE Processing Pipeline dce2c9e1d9d7dfbc2889cdfdefd0bfd1 https://www.encodeproject.org/files/ENCFF940QAP/@@download/ENCFF940QAP.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF648LXV bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF643CGH 4893622585 ENCODE Processing Pipeline eacb73bcd2aa6070362be2ead4f81c2d https://www.encodeproject.org/files/ENCFF648LXV/@@download/ENCFF648LXV.bam GRCh38 released ENCFF068UWU bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF643CGH, ENCFF880UNP 5430129177 ENCODE Processing Pipeline 9da1be1452ac42835fb940ee31ab576c https://www.encodeproject.org/files/ENCFF068UWU/@@download/ENCFF068UWU.bam GRCh38 released ENCFF181EQP bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF643CGH 685944872 ENCODE Processing Pipeline 684647ed6d6467c1f45fa1b4be03946a https://www.encodeproject.org/files/ENCFF181EQP/@@download/ENCFF181EQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF897MGD bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF643CGH 478987030 ENCODE Processing Pipeline d42995da3fe3f481c74c160c332c8285 https://www.encodeproject.org/files/ENCFF897MGD/@@download/ENCFF897MGD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF126WTF bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF824RXN 1455876485 ENCODE Processing Pipeline d6f7e3208cd2d39b598b0583eee0b4fa https://www.encodeproject.org/files/ENCFF126WTF/@@download/ENCFF126WTF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF250XOF bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF643CGH 1289695907 ENCODE Processing Pipeline 56ad54681e2306a1d9114b3ae40d0dc7 https://www.encodeproject.org/files/ENCFF250XOF/@@download/ENCFF250XOF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF983YCI bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF643CGH 1016241355 ENCODE Processing Pipeline 2430c20788da57425b0d39fe6b214da6 https://www.encodeproject.org/files/ENCFF983YCI/@@download/ENCFF983YCI.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF207QTV bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF643CGH 1171354888 ENCODE Processing Pipeline 972d699532b32b05425ab4c48a1393ab https://www.encodeproject.org/files/ENCFF207QTV/@@download/ENCFF207QTV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF577HXX bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF643CGH, ENCFF979JXL 3327766359 ENCODE Processing Pipeline cfa348318de99cf206601f476ea1f5fe https://www.encodeproject.org/files/ENCFF577HXX/@@download/ENCFF577HXX.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF474GOR bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF643CGH 4975631098 ENCODE Processing Pipeline a4c5f8c30708e019d361300e491b23c6 https://www.encodeproject.org/files/ENCFF474GOR/@@download/ENCFF474GOR.bam GRCh38 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF044ZFD bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF643CGH 728262178 ENCODE Processing Pipeline 276abd274341e7bd4d672c17cf8ffaba https://www.encodeproject.org/files/ENCFF044ZFD/@@download/ENCFF044ZFD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF748XLG bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF643CGH 810061375 ENCODE Processing Pipeline 1375ba0eaea33bea429d4ced8663e8a4 https://www.encodeproject.org/files/ENCFF748XLG/@@download/ENCFF748XLG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664MCF bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF643CGH 254590300 ENCODE Processing Pipeline 4ea418ff2e331ecb470097c52f9e82ef https://www.encodeproject.org/files/ENCFF664MCF/@@download/ENCFF664MCF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF567AIN bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF643CGH 453482025 ENCODE Processing Pipeline f8c1f06adebff3811d750a78778403d9 https://www.encodeproject.org/files/ENCFF567AIN/@@download/ENCFF567AIN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF707RRY bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF643CGH 437501433 ENCODE Processing Pipeline df57856fa6dc8dfbea8eb865eb2b5a21 https://www.encodeproject.org/files/ENCFF707RRY/@@download/ENCFF707RRY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF971KJA bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF643CGH 499355998 ENCODE Processing Pipeline 468a98865066dc01460b7b47aa4acaa3 https://www.encodeproject.org/files/ENCFF971KJA/@@download/ENCFF971KJA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF117CDU bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF643CGH, ENCFF645XNK, ENCFF950ZQE 4142815652 ENCODE Processing Pipeline 677c6463ed4cff6c5344d541037dec38 https://www.encodeproject.org/files/ENCFF117CDU/@@download/ENCFF117CDU.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF916MHZ bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF643CGH, ENCFF970AND 4810597336 ENCODE Processing Pipeline 859eec6e78c40c25f17280eb12a98b42 https://www.encodeproject.org/files/ENCFF916MHZ/@@download/ENCFF916MHZ.bam GRCh38 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF438BFX bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF643CGH 1095979780 ENCODE Processing Pipeline 5b88d1095c40c40e129e47df5ffe2fdf https://www.encodeproject.org/files/ENCFF438BFX/@@download/ENCFF438BFX.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF838WWO bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF643CGH 1291753023 ENCODE Processing Pipeline 7ab9e084160bc6ac7f40063d73b25afa https://www.encodeproject.org/files/ENCFF838WWO/@@download/ENCFF838WWO.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms ENCFF246NWJ bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF782RSZ 1240459382 ENCODE Processing Pipeline ba61233c4964bd11d5a2b777c802df62 https://www.encodeproject.org/files/ENCFF246NWJ/@@download/ENCFF246NWJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF999YSD bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF643CGH 1978387844 ENCODE Processing Pipeline dfbb339b221bb10bbb6afaaf82338dc8 https://www.encodeproject.org/files/ENCFF999YSD/@@download/ENCFF999YSD.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF482CMU bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF643CGH 1209809373 ENCODE Processing Pipeline 9bfbf1d42fbf68593c7a8c7b24a25fe3 https://www.encodeproject.org/files/ENCFF482CMU/@@download/ENCFF482CMU.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF662BBY bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF643CGH 1026109854 ENCODE Processing Pipeline 265a284d83a61d8edb754e8deba6c35d https://www.encodeproject.org/files/ENCFF662BBY/@@download/ENCFF662BBY.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF018FQW bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF643CGH 535815250 ENCODE Processing Pipeline d5d62a4389314d1d84256f89d76bf4b2 https://www.encodeproject.org/files/ENCFF018FQW/@@download/ENCFF018FQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF275TPO bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF643CGH 511252471 ENCODE Processing Pipeline 91e886048b87d2550a9b0411e59da14f https://www.encodeproject.org/files/ENCFF275TPO/@@download/ENCFF275TPO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF697IMJ bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF643CGH 935860438 ENCODE Processing Pipeline ab4296a0f502639983c28a38df35e814 https://www.encodeproject.org/files/ENCFF697IMJ/@@download/ENCFF697IMJ.bam GRCh38 released low read length biological replicates with identical biosample ENCFF523LJK bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF643CGH 1291127895 ENCODE Processing Pipeline 1fccfd21c43d1a3e03a0ea65b65331e8 https://www.encodeproject.org/files/ENCFF523LJK/@@download/ENCFF523LJK.bam GRCh38 released low read length biological replicates with identical biosample ENCFF327HGF bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF928MCL 1253372090 ENCODE Processing Pipeline 3fe7b202743e3e1ca4753218762e6910 https://www.encodeproject.org/files/ENCFF327HGF/@@download/ENCFF327HGF.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF578RKV bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF649ROJ 1561009394 ENCODE Processing Pipeline 395cb10e5f888cf2fefd9cf36d01d901 https://www.encodeproject.org/files/ENCFF578RKV/@@download/ENCFF578RKV.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF091GEA bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF643CGH 471510621 ENCODE Processing Pipeline a7df480b603b49bc350b1f575a0ff1b2 https://www.encodeproject.org/files/ENCFF091GEA/@@download/ENCFF091GEA.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF565LZS bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF643CGH 721783471 ENCODE Processing Pipeline 83a8d0b143eca18da7cd320a4853522c https://www.encodeproject.org/files/ENCFF565LZS/@@download/ENCFF565LZS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF103BEQ bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF643CGH, ENCFF885OGQ 1641550297 ENCODE Processing Pipeline d1c4acf45184797165174cf87261a677 https://www.encodeproject.org/files/ENCFF103BEQ/@@download/ENCFF103BEQ.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF428OAR bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF643CGH 2011926108 ENCODE Processing Pipeline 660f70c5d7f7f339d5866a4b39efeb91 https://www.encodeproject.org/files/ENCFF428OAR/@@download/ENCFF428OAR.bam GRCh38 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF125MJO bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF643CGH 911844798 ENCODE Processing Pipeline 6aea0da008ef8128b06bcd7dfa2b6d73 https://www.encodeproject.org/files/ENCFF125MJO/@@download/ENCFF125MJO.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF585INN bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF643CGH 1136848851 ENCODE Processing Pipeline 8a86dec60845ff95dcbaa017f6e14fb0 https://www.encodeproject.org/files/ENCFF585INN/@@download/ENCFF585INN.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF653BQI bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF643CGH 933551952 ENCODE Processing Pipeline 5d59234e2814a3c33ecbb66a562f0ee2 https://www.encodeproject.org/files/ENCFF653BQI/@@download/ENCFF653BQI.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF807YWR bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF643CGH 1138641488 ENCODE Processing Pipeline f893dd1d087a8a8aab83be6e85c629da https://www.encodeproject.org/files/ENCFF807YWR/@@download/ENCFF807YWR.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF209IIA bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 100 ENCFF175BVH, ENCFF363OSM, ENCFF643CGH 5699459447 ENCODE Processing Pipeline fe559165654ff4b101727e07b44e081c https://www.encodeproject.org/files/ENCFF209IIA/@@download/ENCFF209IIA.bam GRCh38 released antibody characterized with exemption ENCFF317VSS bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 100 ENCFF234SUV, ENCFF294HST, ENCFF643CGH 5928599666 ENCODE Processing Pipeline bee0207a9ec4ab14234ed29f7f0cb60a https://www.encodeproject.org/files/ENCFF317VSS/@@download/ENCFF317VSS.bam GRCh38 released antibody characterized with exemption ENCFF408WDT bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF643CGH 245631124 ENCODE Processing Pipeline dc2245297e525a118531f2d639fa7e10 https://www.encodeproject.org/files/ENCFF408WDT/@@download/ENCFF408WDT.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF424IRC bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF643CGH 519320804 ENCODE Processing Pipeline c36a60dbadc68c68beea314d25144441 https://www.encodeproject.org/files/ENCFF424IRC/@@download/ENCFF424IRC.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF089XMI bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF643CGH 321446364 ENCODE Processing Pipeline 58ed0509c198f7cc1b6b78bac4af5ca8 https://www.encodeproject.org/files/ENCFF089XMI/@@download/ENCFF089XMI.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF263PLG bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF643CGH 259462570 ENCODE Processing Pipeline 12078df06f1d3d9af7bd0f2529dcff5d https://www.encodeproject.org/files/ENCFF263PLG/@@download/ENCFF263PLG.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF735TSS bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YNX, ENCFF643CGH 157763907 ENCODE Processing Pipeline c65ad06543c09ea19930592651100585 https://www.encodeproject.org/files/ENCFF735TSS/@@download/ENCFF735TSS.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF491JGC bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YNW, ENCFF643CGH 196426429 ENCODE Processing Pipeline c75c58f4384dc4d5def835ca47a9c186 https://www.encodeproject.org/files/ENCFF491JGC/@@download/ENCFF491JGC.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF811NLF bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF643CGH 438721804 ENCODE Processing Pipeline 8b85b306c5dcc86fc314b32f4158664d https://www.encodeproject.org/files/ENCFF811NLF/@@download/ENCFF811NLF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF880RHB bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF643CGH 517056020 ENCODE Processing Pipeline 4d6c6574cf2405e5cb010e6ebc0ae066 https://www.encodeproject.org/files/ENCFF880RHB/@@download/ENCFF880RHB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF325BGM bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF643CGH 510539331 ENCODE Processing Pipeline 290a57bf4e5135433517e5361002bae5 https://www.encodeproject.org/files/ENCFF325BGM/@@download/ENCFF325BGM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF285GBC bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF643CGH 641729351 ENCODE Processing Pipeline 86cdf4db468ca120f2fc1e4a6ed3b33d https://www.encodeproject.org/files/ENCFF285GBC/@@download/ENCFF285GBC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF916PMP bam alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF643CGH 570621284 ENCODE Processing Pipeline 784a8b02de0525d9364a135b10fbcc73 https://www.encodeproject.org/files/ENCFF916PMP/@@download/ENCFF916PMP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF269UFJ bam alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF643CGH, ENCFF791UGB 3867277375 ENCODE Processing Pipeline 98ef63956ffbfc70d85955ffe45d46cb https://www.encodeproject.org/files/ENCFF269UFJ/@@download/ENCFF269UFJ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF435DKZ bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF643CGH 863391414 ENCODE Processing Pipeline 875084a679cccdd4339b63abb6d987d6 https://www.encodeproject.org/files/ENCFF435DKZ/@@download/ENCFF435DKZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF178SXE bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF643CGH 743760816 ENCODE Processing Pipeline 01f88275cbb3e9149201364b46c6b75d https://www.encodeproject.org/files/ENCFF178SXE/@@download/ENCFF178SXE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF363YBM bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF643CGH 844760149 ENCODE Processing Pipeline 855c0241e135a5f0c916b1d64c24d338 https://www.encodeproject.org/files/ENCFF363YBM/@@download/ENCFF363YBM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF176NKY bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF643CGH 830398783 ENCODE Processing Pipeline 4d2d4e14868cd55f4a3a7214ba99406f https://www.encodeproject.org/files/ENCFF176NKY/@@download/ENCFF176NKY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF024QRE bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF643CGH 464846566 ENCODE Processing Pipeline 5f5b0f493193c95d5f90f44029a074b5 https://www.encodeproject.org/files/ENCFF024QRE/@@download/ENCFF024QRE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF435RCL bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF643CGH 679650658 ENCODE Processing Pipeline 6b11f70710d22af2b39d491dd36d4808 https://www.encodeproject.org/files/ENCFF435RCL/@@download/ENCFF435RCL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF093QMN bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF643CGH 1203989147 ENCODE Processing Pipeline fa7a8809aab0c4542e79d3323b44a1e8 https://www.encodeproject.org/files/ENCFF093QMN/@@download/ENCFF093QMN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF289RGM bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF643CGH 1316020814 ENCODE Processing Pipeline ad269b05d0a2e31f14b5d768a01ffcd8 https://www.encodeproject.org/files/ENCFF289RGM/@@download/ENCFF289RGM.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF634VSH bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF643CGH 435519372 ENCODE Processing Pipeline e018b502f48e83be7f1bf6d77833a14b https://www.encodeproject.org/files/ENCFF634VSH/@@download/ENCFF634VSH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF048NRD bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF643CGH 409018113 ENCODE Processing Pipeline 1a73604df77c86aec83885b3865bc38c https://www.encodeproject.org/files/ENCFF048NRD/@@download/ENCFF048NRD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF865ISL bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF643CGH 555115405 ENCODE Processing Pipeline ecf32b2685e2bf95e6f8e12de6c2e56f https://www.encodeproject.org/files/ENCFF865ISL/@@download/ENCFF865ISL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF554BLC bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF643CGH 743794253 ENCODE Processing Pipeline 75e43cd8754e723de81a5927a3d6229a https://www.encodeproject.org/files/ENCFF554BLC/@@download/ENCFF554BLC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF420ZVF bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF643CGH 658300249 ENCODE Processing Pipeline 69a73b2a3c93a1e2ddc20ec3ef9c80c2 https://www.encodeproject.org/files/ENCFF420ZVF/@@download/ENCFF420ZVF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF434RFX bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF643CGH 664430927 ENCODE Processing Pipeline 58e6e7aebce2f9bf943101a3124815e8 https://www.encodeproject.org/files/ENCFF434RFX/@@download/ENCFF434RFX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361TNY bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF643CGH 422277702 ENCODE Processing Pipeline 62e176131bb09128fc87e95af1146aa4 https://www.encodeproject.org/files/ENCFF361TNY/@@download/ENCFF361TNY.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF755GBM bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF643CGH 893680963 ENCODE Processing Pipeline 05ff3c9543e7e1637a6b3054b6bf7261 https://www.encodeproject.org/files/ENCFF755GBM/@@download/ENCFF755GBM.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF310RSH bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF643CGH 925704993 ENCODE Processing Pipeline cb402315d202abb784d266a2d5eabf4e https://www.encodeproject.org/files/ENCFF310RSH/@@download/ENCFF310RSH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF455QSR bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF643CGH 343341036 ENCODE Processing Pipeline 28fb42f6ab0368bc0e092fb54751b457 https://www.encodeproject.org/files/ENCFF455QSR/@@download/ENCFF455QSR.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF876KTI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF643CGH 471465252 ENCODE Processing Pipeline 6e2a04a4263b59459407a309082cf709 https://www.encodeproject.org/files/ENCFF876KTI/@@download/ENCFF876KTI.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF952XKW bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF643CGH 574489125 ENCODE Processing Pipeline 4c2b13e73e74f24a2738a0d0e3931ec9 https://www.encodeproject.org/files/ENCFF952XKW/@@download/ENCFF952XKW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF884HCB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF643CGH 721550730 ENCODE Processing Pipeline ed93c8e4445becfb6b3d0ec679f36b2b https://www.encodeproject.org/files/ENCFF884HCB/@@download/ENCFF884HCB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF545ETC bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF643CGH 342142700 ENCODE Processing Pipeline 707837ef99d6cd7ef46216bf4cf79a6b https://www.encodeproject.org/files/ENCFF545ETC/@@download/ENCFF545ETC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF310ZIS bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF643CGH 468026801 ENCODE Processing Pipeline 6d646037df94f8378c442cf792bda946 https://www.encodeproject.org/files/ENCFF310ZIS/@@download/ENCFF310ZIS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF031LWP bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF643CGH 650649037 ENCODE Processing Pipeline 4d17febad8aa54ab687673dcf3df7af1 https://www.encodeproject.org/files/ENCFF031LWP/@@download/ENCFF031LWP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF956OLR bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF643CGH 721813650 ENCODE Processing Pipeline a41f79ec9f32228d274714c7a9655d1a https://www.encodeproject.org/files/ENCFF956OLR/@@download/ENCFF956OLR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818QIJ bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF643CGH 297526566 ENCODE Processing Pipeline 49ba6cde7166132e31d8fd74073b8be4 https://www.encodeproject.org/files/ENCFF818QIJ/@@download/ENCFF818QIJ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF363BPK bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF643CGH 170355286 ENCODE Processing Pipeline b6e984c9b9990a101a4f1c27082f273f https://www.encodeproject.org/files/ENCFF363BPK/@@download/ENCFF363BPK.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF444ZUH bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF643CGH 565142937 ENCODE Processing Pipeline baa717f0a126c769bfeb071f462ce0fb https://www.encodeproject.org/files/ENCFF444ZUH/@@download/ENCFF444ZUH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF474ETY bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF643CGH 480629115 ENCODE Processing Pipeline 046ba9a822d5f314b97558b59c274cc3 https://www.encodeproject.org/files/ENCFF474ETY/@@download/ENCFF474ETY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF682XGC bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF643CGH 787162278 ENCODE Processing Pipeline af150cb077cc0dc0bde92850b6358a02 https://www.encodeproject.org/files/ENCFF682XGC/@@download/ENCFF682XGC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF975ZXB bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF643CGH 1163632893 ENCODE Processing Pipeline 7b84762e044235d41aea79208dd53b9e https://www.encodeproject.org/files/ENCFF975ZXB/@@download/ENCFF975ZXB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF403OML bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF643CGH 773441176 ENCODE Processing Pipeline fb6911f5f8786bd415490063df667d49 https://www.encodeproject.org/files/ENCFF403OML/@@download/ENCFF403OML.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF361YDK bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF643CGH 863122819 ENCODE Processing Pipeline ac3d118bfd55bc69cf371451af5f3fe9 https://www.encodeproject.org/files/ENCFF361YDK/@@download/ENCFF361YDK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF372TQJ bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF643CGH 1965070839 ENCODE Processing Pipeline 0443b28151bf653f90851ebf61d4d533 https://www.encodeproject.org/files/ENCFF372TQJ/@@download/ENCFF372TQJ.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF645ARX bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF643CGH 1390528072 ENCODE Processing Pipeline 2f8bf169f370198151c4b3806211f2e3 https://www.encodeproject.org/files/ENCFF645ARX/@@download/ENCFF645ARX.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF630JRN bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF643CGH 826249394 ENCODE Processing Pipeline e2639e30b1eb362a20f3b066cf044905 https://www.encodeproject.org/files/ENCFF630JRN/@@download/ENCFF630JRN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF594OID bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF643CGH 802739068 ENCODE Processing Pipeline 8d58a4c636690568dcdbac14a2601a77 https://www.encodeproject.org/files/ENCFF594OID/@@download/ENCFF594OID.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF767TQD bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF643CGH 836087212 ENCODE Processing Pipeline 3e00fd4f121a483149900cbc2ff9108d https://www.encodeproject.org/files/ENCFF767TQD/@@download/ENCFF767TQD.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF761HTF bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF643CGH 902648089 ENCODE Processing Pipeline 60d7381874066ee31afb9a29eb4e7072 https://www.encodeproject.org/files/ENCFF761HTF/@@download/ENCFF761HTF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF903YUY bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF643CGH 364319073 ENCODE Processing Pipeline d577eb3012f8e591a4df832a7e8f4091 https://www.encodeproject.org/files/ENCFF903YUY/@@download/ENCFF903YUY.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF875VWC bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF643CGH 389620607 ENCODE Processing Pipeline df5f17eb78fb9e3d7f5271a494a936bf https://www.encodeproject.org/files/ENCFF875VWC/@@download/ENCFF875VWC.bam GRCh38 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF351CVI bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF643CGH 815923509 ENCODE Processing Pipeline 4aa5358694f0369fe31ff908076663c5 https://www.encodeproject.org/files/ENCFF351CVI/@@download/ENCFF351CVI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF313OIM bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF643CGH 837358493 ENCODE Processing Pipeline b1972e0980c1f365bff8d3ada9d14e05 https://www.encodeproject.org/files/ENCFF313OIM/@@download/ENCFF313OIM.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF068XVC bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF643CGH 623093231 ENCODE Processing Pipeline f09c6530480586f1aae943cc19954db9 https://www.encodeproject.org/files/ENCFF068XVC/@@download/ENCFF068XVC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976DWY bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF643CGH 836421921 ENCODE Processing Pipeline 3568280eedcf434ba1e93c18beed60f0 https://www.encodeproject.org/files/ENCFF976DWY/@@download/ENCFF976DWY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567GMS bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF643CGH 314274999 ENCODE Processing Pipeline 3fcb9ae7eac6017d046db9fdae60a240 https://www.encodeproject.org/files/ENCFF567GMS/@@download/ENCFF567GMS.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF067TWQ bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF643CGH 732096181 ENCODE Processing Pipeline 0b4e602e207b942e965e1c7f044929eb https://www.encodeproject.org/files/ENCFF067TWQ/@@download/ENCFF067TWQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF380VYQ bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF643CGH 749250973 ENCODE Processing Pipeline a5e4c63af6f924b4fef7293c00ef2f68 https://www.encodeproject.org/files/ENCFF380VYQ/@@download/ENCFF380VYQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF569JCK bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF643CGH 816901672 ENCODE Processing Pipeline 60e04abb4c29938b13093ca8373607c8 https://www.encodeproject.org/files/ENCFF569JCK/@@download/ENCFF569JCK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF414VTM bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF643CGH 727916481 ENCODE Processing Pipeline a5fcf9b9f92f461896cbd558138fab5e https://www.encodeproject.org/files/ENCFF414VTM/@@download/ENCFF414VTM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF439LPX bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF643CGH 746323465 ENCODE Processing Pipeline d8109d4fbb0ff4cc7c3fd0d1c7dad793 https://www.encodeproject.org/files/ENCFF439LPX/@@download/ENCFF439LPX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF406KPS bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF643CGH 521550417 ENCODE Processing Pipeline 138b386531fbf8b699af48fd9d5e88e0 https://www.encodeproject.org/files/ENCFF406KPS/@@download/ENCFF406KPS.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF414YAT bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF643CGH 400147039 ENCODE Processing Pipeline ec722298268282a803fbe84bdf2edc47 https://www.encodeproject.org/files/ENCFF414YAT/@@download/ENCFF414YAT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF267EEY bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF643CGH 6284754107 ENCODE Processing Pipeline a1d81d1804b2e04a8d732640fe2f8fc3 https://www.encodeproject.org/files/ENCFF267EEY/@@download/ENCFF267EEY.bam GRCh38 released ENCFF908CYX bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF643CGH, ENCFF739VNU 6663598439 ENCODE Processing Pipeline b1ca9d91bb1c1f8e9e9283f47224c9c3 https://www.encodeproject.org/files/ENCFF908CYX/@@download/ENCFF908CYX.bam GRCh38 released ENCFF951IVR bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF643CGH 3573709764 ENCODE Processing Pipeline df045325f473e7d783afdeae76b83e19 https://www.encodeproject.org/files/ENCFF951IVR/@@download/ENCFF951IVR.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF410WYJ bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF643CGH, ENCFF645KUF 4424574638 ENCODE Processing Pipeline 4e88fb8993ff97c2e3b85fea150a9d03 https://www.encodeproject.org/files/ENCFF410WYJ/@@download/ENCFF410WYJ.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF140ZMN bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF643CGH 676829144 ENCODE Processing Pipeline a08d579878c6878a2013de22217a6859 https://www.encodeproject.org/files/ENCFF140ZMN/@@download/ENCFF140ZMN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171VBC bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF643CGH 637309879 ENCODE Processing Pipeline 7b4d15b1a5e86bd618423e13dc890cc4 https://www.encodeproject.org/files/ENCFF171VBC/@@download/ENCFF171VBC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF114QPX bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF643CGH 204149299 ENCODE Processing Pipeline fe89d3103fceacb222b5535eb4ecc96a https://www.encodeproject.org/files/ENCFF114QPX/@@download/ENCFF114QPX.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF272YVM bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF643CGH 359917755 ENCODE Processing Pipeline 5460a6564353857129a11f47138e409f https://www.encodeproject.org/files/ENCFF272YVM/@@download/ENCFF272YVM.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF280SUM bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF643CGH 370799104 ENCODE Processing Pipeline 6d67d5971bd092e28a788feec29f0b89 https://www.encodeproject.org/files/ENCFF280SUM/@@download/ENCFF280SUM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595NGV bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF643CGH 391867513 ENCODE Processing Pipeline 2371505050f9222102bd2a8f53ccdeb7 https://www.encodeproject.org/files/ENCFF595NGV/@@download/ENCFF595NGV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF018QYS bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF643CGH 223324160 ENCODE Processing Pipeline 8a373b594592388ad36253445e01b028 https://www.encodeproject.org/files/ENCFF018QYS/@@download/ENCFF018QYS.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF753GJH bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF643CGH 228943158 ENCODE Processing Pipeline 1192407e4535850b65b3a7d3e66939ad https://www.encodeproject.org/files/ENCFF753GJH/@@download/ENCFF753GJH.bam GRCh38 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF327QNZ bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF643CGH 780347766 ENCODE Processing Pipeline d9e40a8407c03cbb07308e09f3e4cdb7 https://www.encodeproject.org/files/ENCFF327QNZ/@@download/ENCFF327QNZ.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF696UMD bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF643CGH 951481971 ENCODE Processing Pipeline f9996aea7b4c0df3b8fe59638d47188b https://www.encodeproject.org/files/ENCFF696UMD/@@download/ENCFF696UMD.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF911WGI bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF643CGH 562771764 ENCODE Processing Pipeline 4b651f52f119b30d33940d9d1224dad7 https://www.encodeproject.org/files/ENCFF911WGI/@@download/ENCFF911WGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF357WAY bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF643CGH 768642692 ENCODE Processing Pipeline 4a0cf377d30c9b90bdd5c2568929a35e https://www.encodeproject.org/files/ENCFF357WAY/@@download/ENCFF357WAY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF805SCJ bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF643CGH 384671859 ENCODE Processing Pipeline 873c690d546fc5e6c2e3950288bfc164 https://www.encodeproject.org/files/ENCFF805SCJ/@@download/ENCFF805SCJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF309DIF bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF643CGH 342050881 ENCODE Processing Pipeline 87b12168549ed3ccb174cc8588916a73 https://www.encodeproject.org/files/ENCFF309DIF/@@download/ENCFF309DIF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF953PTA bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF643CGH 313575489 ENCODE Processing Pipeline f8b9aa321a79dee58f71480fa5da0035 https://www.encodeproject.org/files/ENCFF953PTA/@@download/ENCFF953PTA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF113JVG bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF643CGH 459780381 ENCODE Processing Pipeline a43f6092f2269a073f30b2d0d67a5211 https://www.encodeproject.org/files/ENCFF113JVG/@@download/ENCFF113JVG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF772ZLA bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF643CGH 870804648 ENCODE Processing Pipeline 19a03c716ac209069b26a1ccec1e0a8d https://www.encodeproject.org/files/ENCFF772ZLA/@@download/ENCFF772ZLA.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF554RCH bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF643CGH, ENCFF887BKA 855534594 ENCODE Processing Pipeline 7dfb0b136c0d6d0572ba376312932b55 https://www.encodeproject.org/files/ENCFF554RCH/@@download/ENCFF554RCH.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF922JWO bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF643CGH 3231598909 ENCODE Processing Pipeline 7433bf237c54671efc372cffb2b7d98a https://www.encodeproject.org/files/ENCFF922JWO/@@download/ENCFF922JWO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF701KAF bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF643CGH 4190431613 ENCODE Processing Pipeline ca8a5b3559cf494f078701b0d3ece52a https://www.encodeproject.org/files/ENCFF701KAF/@@download/ENCFF701KAF.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF061SRP bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF643CGH 673879639 ENCODE Processing Pipeline 1fb9f5170006fe0ff0583d33700771cd https://www.encodeproject.org/files/ENCFF061SRP/@@download/ENCFF061SRP.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF059JNI bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF643CGH 495722923 ENCODE Processing Pipeline d5b57d7655767709b821e7851fdd127c https://www.encodeproject.org/files/ENCFF059JNI/@@download/ENCFF059JNI.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF272UWD bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF643CGH 572610554 ENCODE Processing Pipeline 3296a45599f30ad495054e3e9708180e https://www.encodeproject.org/files/ENCFF272UWD/@@download/ENCFF272UWD.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF240HQW bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF643CGH 624669308 ENCODE Processing Pipeline d4cd200bf679a11c0836ffe96120f520 https://www.encodeproject.org/files/ENCFF240HQW/@@download/ENCFF240HQW.bam GRCh38 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF994ZHD bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF643CGH 1074310346 ENCODE Processing Pipeline a8fa51659f44a13ea021bf995201ae86 https://www.encodeproject.org/files/ENCFF994ZHD/@@download/ENCFF994ZHD.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF396BCM bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF643CGH 962132180 ENCODE Processing Pipeline c179a3c2c9095755766891c7c2c2f840 https://www.encodeproject.org/files/ENCFF396BCM/@@download/ENCFF396BCM.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF856DBD bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RWK, ENCFF643CGH 205322054 ENCODE Processing Pipeline 533f6ca06b1b23c1367894b4b1daf2ca https://www.encodeproject.org/files/ENCFF856DBD/@@download/ENCFF856DBD.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF003OJN bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 ENCFF000RWO, ENCFF643CGH 447105380 ENCODE Processing Pipeline 61a0d44bdaf025d7aff8ec185aece787 https://www.encodeproject.org/files/ENCFF003OJN/@@download/ENCFF003OJN.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF258HHO bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RWH, ENCFF643CGH 223822474 ENCODE Processing Pipeline 0648041472b93a3db4258cd39bb24e1e https://www.encodeproject.org/files/ENCFF258HHO/@@download/ENCFF258HHO.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF151ZPA bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF643CGH 404783912 ENCODE Processing Pipeline 80d1890cd26e75ab947beadabd31403e https://www.encodeproject.org/files/ENCFF151ZPA/@@download/ENCFF151ZPA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF943XYH bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF643CGH 755100472 ENCODE Processing Pipeline 366d233abdfbdff90842597bfe1a4bd5 https://www.encodeproject.org/files/ENCFF943XYH/@@download/ENCFF943XYH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF192DDJ bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF643CGH 705399211 ENCODE Processing Pipeline 72cc9d5535e6bc1347977ee0d40e42ce https://www.encodeproject.org/files/ENCFF192DDJ/@@download/ENCFF192DDJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF065BJO bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF643CGH 687498269 ENCODE Processing Pipeline 6aab52a3428274bcba032cb5b9c9b9b8 https://www.encodeproject.org/files/ENCFF065BJO/@@download/ENCFF065BJO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF664APT bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF643CGH 936074611 ENCODE Processing Pipeline 7a9ea0c42a84fb3116744cec771c4769 https://www.encodeproject.org/files/ENCFF664APT/@@download/ENCFF664APT.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF663XYQ bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF643CGH 950082673 ENCODE Processing Pipeline 7d782f6b0155990008aa002e97d50843 https://www.encodeproject.org/files/ENCFF663XYQ/@@download/ENCFF663XYQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF050VGU bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF643CGH 744060459 ENCODE Processing Pipeline 5d01e89371387136c4c91c923f35d937 https://www.encodeproject.org/files/ENCFF050VGU/@@download/ENCFF050VGU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864PHP bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF643CGH 682521882 ENCODE Processing Pipeline c895563a82e997d87d588e4ffc59f42f https://www.encodeproject.org/files/ENCFF864PHP/@@download/ENCFF864PHP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF992YZZ bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF643CGH 900594018 ENCODE Processing Pipeline 8b277850d6f15becee8202bfb8e623f8 https://www.encodeproject.org/files/ENCFF992YZZ/@@download/ENCFF992YZZ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF420VTB bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF643CGH 1120039866 ENCODE Processing Pipeline bcc28a848b39aadddd5b87b6b7495ba8 https://www.encodeproject.org/files/ENCFF420VTB/@@download/ENCFF420VTB.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF758ZNV bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF643CGH 858049854 ENCODE Processing Pipeline 318fe55563578122dc13a55abe46fe1b https://www.encodeproject.org/files/ENCFF758ZNV/@@download/ENCFF758ZNV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF315QGI bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF643CGH 490066223 ENCODE Processing Pipeline 977c22830c84763c7bc13fe05599664f https://www.encodeproject.org/files/ENCFF315QGI/@@download/ENCFF315QGI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF184PWQ bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF643CGH 534405570 ENCODE Processing Pipeline 7d2a601a175cd7f2b086a962d7a205d8 https://www.encodeproject.org/files/ENCFF184PWQ/@@download/ENCFF184PWQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF577KAH bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF643CGH 647409185 ENCODE Processing Pipeline fafa4dcfeb30f270d9736872e0a35120 https://www.encodeproject.org/files/ENCFF577KAH/@@download/ENCFF577KAH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158TTY bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF643CGH 601003249 ENCODE Processing Pipeline ae0fab79d34b0e4c79a4f7221c23d458 https://www.encodeproject.org/files/ENCFF158TTY/@@download/ENCFF158TTY.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF340WWW bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF643CGH 973760622 ENCODE Processing Pipeline 1f453303a38ce206800610c9415c39f1 https://www.encodeproject.org/files/ENCFF340WWW/@@download/ENCFF340WWW.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF515TAU bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF643CGH 1051584745 ENCODE Processing Pipeline c234494f1ea81faffab704362a47a150 https://www.encodeproject.org/files/ENCFF515TAU/@@download/ENCFF515TAU.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF791EPM bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF643CGH 565801917 ENCODE Processing Pipeline f51a56a7b622c6d25b4a277b6820da99 https://www.encodeproject.org/files/ENCFF791EPM/@@download/ENCFF791EPM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF845MYC bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF643CGH 668203511 ENCODE Processing Pipeline 141168d9fac65acd3bce40b23283d1de https://www.encodeproject.org/files/ENCFF845MYC/@@download/ENCFF845MYC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF672YBO bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF643CGH 921763972 ENCODE Processing Pipeline 5c0cfb6d28d247f2519a35abeaff2621 https://www.encodeproject.org/files/ENCFF672YBO/@@download/ENCFF672YBO.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF024CIJ bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF643CGH 1092265491 ENCODE Processing Pipeline 4655ca8d5a7dce86648dc854ad582738 https://www.encodeproject.org/files/ENCFF024CIJ/@@download/ENCFF024CIJ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF102LCM bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF643CGH 559647361 ENCODE Processing Pipeline 79252433b5481bd2313da115f8620ef2 https://www.encodeproject.org/files/ENCFF102LCM/@@download/ENCFF102LCM.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF810NAZ bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF643CGH 712300408 ENCODE Processing Pipeline 42943b088451938fb38824be88de2290 https://www.encodeproject.org/files/ENCFF810NAZ/@@download/ENCFF810NAZ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF787RXW bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF643CGH 708386490 ENCODE Processing Pipeline dccd97a5410a7793c3c491deabff4c0e https://www.encodeproject.org/files/ENCFF787RXW/@@download/ENCFF787RXW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF101XWQ bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF643CGH 721054374 ENCODE Processing Pipeline 31363ba69c694d683465846b1f3bc553 https://www.encodeproject.org/files/ENCFF101XWQ/@@download/ENCFF101XWQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF668RWQ bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF643CGH 1623664290 ENCODE Processing Pipeline 2bc58d568ef98037dfeaf5202f800f1d https://www.encodeproject.org/files/ENCFF668RWQ/@@download/ENCFF668RWQ.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF397ZXH bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF930REO 1323298812 ENCODE Processing Pipeline 618274171efd2794a1fb70de3ee4cb8b https://www.encodeproject.org/files/ENCFF397ZXH/@@download/ENCFF397ZXH.bam GRCh38 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF045YYY bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF643CGH 610822083 ENCODE Processing Pipeline b8104f3e3d4f182bf34856dfd736e997 https://www.encodeproject.org/files/ENCFF045YYY/@@download/ENCFF045YYY.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF736MXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF643CGH 828196574 ENCODE Processing Pipeline 7bc29dbbbe4052edd7936e311c9af471 https://www.encodeproject.org/files/ENCFF736MXP/@@download/ENCFF736MXP.bam GRCh38 released low read length, low read depth control insufficient read depth ENCFF917UQJ bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF643CGH 453141892 ENCODE Processing Pipeline 391aa1fdaf66705873809b60ee1ff28e https://www.encodeproject.org/files/ENCFF917UQJ/@@download/ENCFF917UQJ.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF419SAY bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF643CGH 330875443 ENCODE Processing Pipeline 0f2e50c526556d87c58c395e0c0dbba9 https://www.encodeproject.org/files/ENCFF419SAY/@@download/ENCFF419SAY.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF758YDA bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAC, ENCFF643CGH 889422948 ENCODE Processing Pipeline c8ab39f174e5665bdb0d5646c55f5d36 https://www.encodeproject.org/files/ENCFF758YDA/@@download/ENCFF758YDA.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF193KZT bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAA, ENCFF643CGH 662179320 ENCODE Processing Pipeline 630def2976dfd725d82b95c3d8d68afc https://www.encodeproject.org/files/ENCFF193KZT/@@download/ENCFF193KZT.bam GRCh38 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF836TAY bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 50 ENCFF444RSD, ENCFF643CGH 741496829 ENCODE Processing Pipeline 09cf077c26302719cc4c0623c0aa843c https://www.encodeproject.org/files/ENCFF836TAY/@@download/ENCFF836TAY.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF897TJD bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 50 ENCFF240REY, ENCFF643CGH 1201800617 ENCODE Processing Pipeline a49cae8c843aba9c6f0ff8bd0e01f614 https://www.encodeproject.org/files/ENCFF897TJD/@@download/ENCFF897TJD.bam GRCh38 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF554XNF bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF643CGH 1190758005 ENCODE Processing Pipeline 1ba6864152989c5dda974d6bcc659c61 https://www.encodeproject.org/files/ENCFF554XNF/@@download/ENCFF554XNF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF042KDC bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF643CGH, ENCFF734HBO 1471358215 ENCODE Processing Pipeline f5c601c3b1c8c69b86d68b87134844fb https://www.encodeproject.org/files/ENCFF042KDC/@@download/ENCFF042KDC.bam GRCh38 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF930GGN bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF643CGH, ENCFF842KVM 1142998416 ENCODE Processing Pipeline 99ce6112c5d25775cb4a6ef5a07867c2 https://www.encodeproject.org/files/ENCFF930GGN/@@download/ENCFF930GGN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF189RMF bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF643CGH 1097530402 ENCODE Processing Pipeline 35cda8dcd780f4f1ba25cf2293008757 https://www.encodeproject.org/files/ENCFF189RMF/@@download/ENCFF189RMF.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF928HIN bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF643CGH 613397078 ENCODE Processing Pipeline 8225bc8dc096598ec64a9248a2aa3954 https://www.encodeproject.org/files/ENCFF928HIN/@@download/ENCFF928HIN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF903WEP bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF643CGH 739266033 ENCODE Processing Pipeline d6061d341e2d786d2699ef57a59ad2de https://www.encodeproject.org/files/ENCFF903WEP/@@download/ENCFF903WEP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF375OQR bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF643CGH 702595643 ENCODE Processing Pipeline 2368f0e65593f136dd913b7c4132a89f https://www.encodeproject.org/files/ENCFF375OQR/@@download/ENCFF375OQR.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF253RTD bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF643CGH 992778955 ENCODE Processing Pipeline cca694de6583e95d0ac7189203f96739 https://www.encodeproject.org/files/ENCFF253RTD/@@download/ENCFF253RTD.bam GRCh38 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF325UFA bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF643CGH 356890283 ENCODE Processing Pipeline 765895942430724feff22f23849e51cd https://www.encodeproject.org/files/ENCFF325UFA/@@download/ENCFF325UFA.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF932SAB bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF643CGH 834961698 ENCODE Processing Pipeline 1538b5be1a5b2135a97704cd70302075 https://www.encodeproject.org/files/ENCFF932SAB/@@download/ENCFF932SAB.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF884LEJ bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF643CGH 1310865014 ENCODE Processing Pipeline 2c7328f9c0522b10017e23b87d6c443c https://www.encodeproject.org/files/ENCFF884LEJ/@@download/ENCFF884LEJ.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF579PRC bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF643CGH 1228544425 ENCODE Processing Pipeline 4fde830e948cda520da031390b6c7586 https://www.encodeproject.org/files/ENCFF579PRC/@@download/ENCFF579PRC.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF502VCR bam alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF643CGH 4335296548 ENCODE Processing Pipeline 04d916eb7143ec8317f503a4dc1519b7 https://www.encodeproject.org/files/ENCFF502VCR/@@download/ENCFF502VCR.bam GRCh38 released antibody characterized with exemption ENCFF623MQU bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF643CGH, ENCFF991EAW 4144294443 ENCODE Processing Pipeline 69cf75918f12f449c661a24ac8ba0892 https://www.encodeproject.org/files/ENCFF623MQU/@@download/ENCFF623MQU.bam GRCh38 released missing genetic modification characterization ENCFF634KQT bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF643CGH 4346253526 ENCODE Processing Pipeline ecf1f51e364720f75070c9b72ee20e3c https://www.encodeproject.org/files/ENCFF634KQT/@@download/ENCFF634KQT.bam GRCh38 released missing genetic modification characterization ENCFF740VTK bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF643CGH 978666236 ENCODE Processing Pipeline b3e239f836329cc50e6ee1ab2a612988 https://www.encodeproject.org/files/ENCFF740VTK/@@download/ENCFF740VTK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF448SJG bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF643CGH 3341270470 ENCODE Processing Pipeline 8886dc01b43879fb148cd220715e61c8 https://www.encodeproject.org/files/ENCFF448SJG/@@download/ENCFF448SJG.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF786KLU bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF643CGH 3413407961 ENCODE Processing Pipeline a43caf2f3074e728c021861f208ea89f https://www.encodeproject.org/files/ENCFF786KLU/@@download/ENCFF786KLU.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF434GLS bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF643CGH 248531688 ENCODE Processing Pipeline a83ad6b8b23101355522b53211799963 https://www.encodeproject.org/files/ENCFF434GLS/@@download/ENCFF434GLS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF982TSB bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF643CGH 393972607 ENCODE Processing Pipeline 3617b91929554d061a6e1ba51bb23a3c https://www.encodeproject.org/files/ENCFF982TSB/@@download/ENCFF982TSB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF660NOK bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF643CGH 713466645 ENCODE Processing Pipeline eb4b75e7a65dcf614e3e40dabffc4381 https://www.encodeproject.org/files/ENCFF660NOK/@@download/ENCFF660NOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF382TBW bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF643CGH 1029173377 ENCODE Processing Pipeline 6460694c47a81f369c7dcbc8fecc43bb https://www.encodeproject.org/files/ENCFF382TBW/@@download/ENCFF382TBW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF367RFV bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF643CGH 471915662 ENCODE Processing Pipeline 12c6d0163d2bae0241bfda248bf8fea0 https://www.encodeproject.org/files/ENCFF367RFV/@@download/ENCFF367RFV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF459LGD bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF643CGH 711829995 ENCODE Processing Pipeline 89f95d116b4eb79c8c254789f0ebe29e https://www.encodeproject.org/files/ENCFF459LGD/@@download/ENCFF459LGD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF953ZZL bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF643CGH 630166655 ENCODE Processing Pipeline ecf3214addf8a76c29bf49c86cb59fdb https://www.encodeproject.org/files/ENCFF953ZZL/@@download/ENCFF953ZZL.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF729WGC bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF643CGH 773943061 ENCODE Processing Pipeline 19d08f372ee820620943fde08716d257 https://www.encodeproject.org/files/ENCFF729WGC/@@download/ENCFF729WGC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF215TDO bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF643CGH 573011085 ENCODE Processing Pipeline 4ed107a1933fa1398e19d7f2d5e5552f https://www.encodeproject.org/files/ENCFF215TDO/@@download/ENCFF215TDO.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF040MZK bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF643CGH 810735836 ENCODE Processing Pipeline bdaacde521afefa9db075e602f1d84f9 https://www.encodeproject.org/files/ENCFF040MZK/@@download/ENCFF040MZK.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF479JUJ bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF643CGH 325870408 ENCODE Processing Pipeline cdff2f6b917aa19b3b199ba769a42c49 https://www.encodeproject.org/files/ENCFF479JUJ/@@download/ENCFF479JUJ.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF643UCP bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF643CGH 316335022 ENCODE Processing Pipeline 012e4fcbecbddaf4e5e771617b3ccbd7 https://www.encodeproject.org/files/ENCFF643UCP/@@download/ENCFF643UCP.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF908PSF bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF643CGH, ENCFF671VDI 4943284835 ENCODE Processing Pipeline 53b2b92154aa27a57f1aeafacbbe49f5 https://www.encodeproject.org/files/ENCFF908PSF/@@download/ENCFF908PSF.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF786GEU bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF643CGH, ENCFF681PIN, ENCFF760LCQ 5239368489 ENCODE Processing Pipeline b8e11b22441b5e9426aebdd17c9a0ad5 https://www.encodeproject.org/files/ENCFF786GEU/@@download/ENCFF786GEU.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF400BSN bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF643CGH 604873580 ENCODE Processing Pipeline 26ab887f1bc2d49d0ec1515bd2bb4f19 https://www.encodeproject.org/files/ENCFF400BSN/@@download/ENCFF400BSN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF321ZQU bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF643CGH 983134574 ENCODE Processing Pipeline 99aae290f9a2319d1f37728f91a552b6 https://www.encodeproject.org/files/ENCFF321ZQU/@@download/ENCFF321ZQU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF883LXG bam alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF643CGH, ENCFF943NVH 1740690080 ENCODE Processing Pipeline 816f99313c5a1f603a505e1bd82a4fa3 https://www.encodeproject.org/files/ENCFF883LXG/@@download/ENCFF883LXG.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF988HVR bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF643CGH 654294690 ENCODE Processing Pipeline 6ca05126bfff39ed58a87f863096f6fd https://www.encodeproject.org/files/ENCFF988HVR/@@download/ENCFF988HVR.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF178WGW bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF643CGH 1117340209 ENCODE Processing Pipeline bfad364c812c67af39af421d4ca9e17a https://www.encodeproject.org/files/ENCFF178WGW/@@download/ENCFF178WGW.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF727IMQ bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF643CGH 267244796 ENCODE Processing Pipeline fd822fa1ab8bfb3e578d122bddfae94a https://www.encodeproject.org/files/ENCFF727IMQ/@@download/ENCFF727IMQ.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF470LNU bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF643CGH 249258358 ENCODE Processing Pipeline d939cc76e4d29e9211a5b5d00300fcf8 https://www.encodeproject.org/files/ENCFF470LNU/@@download/ENCFF470LNU.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF988NFK bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF643CGH 370145429 ENCODE Processing Pipeline 51fbb4e7057f1a7f2c9e9d133a890ede https://www.encodeproject.org/files/ENCFF988NFK/@@download/ENCFF988NFK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF274NWP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF643CGH 494421293 ENCODE Processing Pipeline cbaddc5924c465b299a5240202eda3fc https://www.encodeproject.org/files/ENCFF274NWP/@@download/ENCFF274NWP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF683DUA bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF643CGH 1253134608 ENCODE Processing Pipeline a41c2d53f3067bc3c9e633f635120097 https://www.encodeproject.org/files/ENCFF683DUA/@@download/ENCFF683DUA.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF213AJW bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF643CGH 1552328848 ENCODE Processing Pipeline 896644e67b09f3b5256b2a456103d330 https://www.encodeproject.org/files/ENCFF213AJW/@@download/ENCFF213AJW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF777MZR bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF643CGH 633218294 ENCODE Processing Pipeline 291ea6b55ad7d5d6679417ebdb8a3899 https://www.encodeproject.org/files/ENCFF777MZR/@@download/ENCFF777MZR.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF054DVF bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF643CGH 675399316 ENCODE Processing Pipeline ad92fb6bcc297d0384e6bc9a726ad1fa https://www.encodeproject.org/files/ENCFF054DVF/@@download/ENCFF054DVF.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF423JON bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF643CGH 744105552 ENCODE Processing Pipeline 07c5868da230928b5ecaf561eaea1965 https://www.encodeproject.org/files/ENCFF423JON/@@download/ENCFF423JON.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF496YWT bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF643CGH 639811257 ENCODE Processing Pipeline cf55b81e4f9466a4e7474ee0cda59a5e https://www.encodeproject.org/files/ENCFF496YWT/@@download/ENCFF496YWT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF099SWT bam alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF643CGH 4629429489 ENCODE Processing Pipeline 547a47b445b9f7117a91371b5aa40ea6 https://www.encodeproject.org/files/ENCFF099SWT/@@download/ENCFF099SWT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF703YNU bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF643CGH 293142941 ENCODE Processing Pipeline 1e0c886b12ee6448a3414fe421b67360 https://www.encodeproject.org/files/ENCFF703YNU/@@download/ENCFF703YNU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF527CTN bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF643CGH 322502619 ENCODE Processing Pipeline 7ee407dc16dadc50dd3711cabab9eafc https://www.encodeproject.org/files/ENCFF527CTN/@@download/ENCFF527CTN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF686DDV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF643CGH 582699200 ENCODE Processing Pipeline 0c23c053cb9cf2b785717691bcaffe6b https://www.encodeproject.org/files/ENCFF686DDV/@@download/ENCFF686DDV.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF779BHG bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF643CGH 1019590180 ENCODE Processing Pipeline 52eccd8fdb898aae4f0da9e4bd21c322 https://www.encodeproject.org/files/ENCFF779BHG/@@download/ENCFF779BHG.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF067SPF bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF643CGH 431645996 ENCODE Processing Pipeline 453a14a6bb407cca4c713f3661af6290 https://www.encodeproject.org/files/ENCFF067SPF/@@download/ENCFF067SPF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF346VYS bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF643CGH 686100526 ENCODE Processing Pipeline 2ac9f8bb03280b0f794ab085d67113e5 https://www.encodeproject.org/files/ENCFF346VYS/@@download/ENCFF346VYS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF253FOO bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF643CGH 773234380 ENCODE Processing Pipeline 8a173e7cd525dbb7bda97c03f36c3ddd https://www.encodeproject.org/files/ENCFF253FOO/@@download/ENCFF253FOO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF538TLU bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF643CGH 570378145 ENCODE Processing Pipeline babcf9ad63624295d0c3219ef76cb66c https://www.encodeproject.org/files/ENCFF538TLU/@@download/ENCFF538TLU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF188YIC bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF643CGH 421477106 ENCODE Processing Pipeline 638a08e0aa1a7b10298dad3de2d4b10c https://www.encodeproject.org/files/ENCFF188YIC/@@download/ENCFF188YIC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF010YAL bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF643CGH 629192359 ENCODE Processing Pipeline 41819a6467c0343653b836d0e53488f6 https://www.encodeproject.org/files/ENCFF010YAL/@@download/ENCFF010YAL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF447PIY bam alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF643CGH, ENCFF899YPM 3455320740 ENCODE Processing Pipeline a6f9c23d09493ca51989db18e71c53ea https://www.encodeproject.org/files/ENCFF447PIY/@@download/ENCFF447PIY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811CBJ bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF643CGH, ENCFF763BLG 1319426906 ENCODE Processing Pipeline 3fda5edadf9bb7ad92783101437dd342 https://www.encodeproject.org/files/ENCFF811CBJ/@@download/ENCFF811CBJ.bam GRCh38 released missing genetic modification characterization ENCFF413VAR bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF643CGH 1599928946 ENCODE Processing Pipeline 76ba98a993cafbe4541aae5600d6a2b7 https://www.encodeproject.org/files/ENCFF413VAR/@@download/ENCFF413VAR.bam GRCh38 released missing genetic modification characterization ENCFF111DMT bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF643CGH 730150773 ENCODE Processing Pipeline 374dc54c1136e96cb3d9f3f639d0ed5a https://www.encodeproject.org/files/ENCFF111DMT/@@download/ENCFF111DMT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF814NIM bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF643CGH 787799375 ENCODE Processing Pipeline 16b864fe365796daa0aaced7d50524e1 https://www.encodeproject.org/files/ENCFF814NIM/@@download/ENCFF814NIM.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF477DKP bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF643CGH 388635127 ENCODE Processing Pipeline ac9518f66409973a1b72a0de1a98acfa https://www.encodeproject.org/files/ENCFF477DKP/@@download/ENCFF477DKP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF495MEU bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF643CGH 788890710 ENCODE Processing Pipeline 8615bb7baa4c26f56afe1e7650ece588 https://www.encodeproject.org/files/ENCFF495MEU/@@download/ENCFF495MEU.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF633OXE bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF643CGH 463125741 ENCODE Processing Pipeline 985ca1c7172126ab0c9d6b307cbaf209 https://www.encodeproject.org/files/ENCFF633OXE/@@download/ENCFF633OXE.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF925VPT bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF643CGH 564498857 ENCODE Processing Pipeline 39da57c940f8d188bb8ffb4be61460a7 https://www.encodeproject.org/files/ENCFF925VPT/@@download/ENCFF925VPT.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF269TPC bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF643CGH 510657644 ENCODE Processing Pipeline a665a2fd8bf83ac05d7fecbb2070bc25 https://www.encodeproject.org/files/ENCFF269TPC/@@download/ENCFF269TPC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF421BPV bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF643CGH 401881181 ENCODE Processing Pipeline de3b1d9ccb79c9d84271772eeb5d3b30 https://www.encodeproject.org/files/ENCFF421BPV/@@download/ENCFF421BPV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF586KRI bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF643CGH 3237648557 ENCODE Processing Pipeline 2041b4b35a91ac18080a08e8887b9813 https://www.encodeproject.org/files/ENCFF586KRI/@@download/ENCFF586KRI.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF662KUU bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF643CGH, ENCFF660MJG 4098492067 ENCODE Processing Pipeline f6eb048a098852b21210333aa501f732 https://www.encodeproject.org/files/ENCFF662KUU/@@download/ENCFF662KUU.bam GRCh38 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF931HUP bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF643CGH 935975519 ENCODE Processing Pipeline 5e2653498d8a7e3e15cf9071911e8e51 https://www.encodeproject.org/files/ENCFF931HUP/@@download/ENCFF931HUP.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF120JNQ bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF643CGH, ENCFF690GSP 1148309960 ENCODE Processing Pipeline 078665f4cae3be941efac3f4b1339ab8 https://www.encodeproject.org/files/ENCFF120JNQ/@@download/ENCFF120JNQ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF398CZS bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF643CGH 734269406 ENCODE Processing Pipeline 3a86ddac0b3c747960095fedf197f65d https://www.encodeproject.org/files/ENCFF398CZS/@@download/ENCFF398CZS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF850FEF bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF643CGH 1058730185 ENCODE Processing Pipeline c6592fcfceeb47abd3ccba095d51ee86 https://www.encodeproject.org/files/ENCFF850FEF/@@download/ENCFF850FEF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF494OJC bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF871SUI, ENCFF921VOK 4311976089 ENCODE Processing Pipeline 2d65c7556cc5db129801d80506fdd246 https://www.encodeproject.org/files/ENCFF494OJC/@@download/ENCFF494OJC.bam GRCh38 released ENCFF636IGK bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF643CGH, ENCFF755HHM 4933959486 ENCODE Processing Pipeline 0882c696da4df92e3868e2b859555aea https://www.encodeproject.org/files/ENCFF636IGK/@@download/ENCFF636IGK.bam GRCh38 released ENCFF690CUE bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF643CGH 759023951 ENCODE Processing Pipeline c150abc54e04693399412b726a3d0368 https://www.encodeproject.org/files/ENCFF690CUE/@@download/ENCFF690CUE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF878XRG bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF643CGH 810399825 ENCODE Processing Pipeline 31806162420c38f46c2221f417fb7e68 https://www.encodeproject.org/files/ENCFF878XRG/@@download/ENCFF878XRG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF152LFC bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF643CGH 357042466 ENCODE Processing Pipeline 6fb4443c133fde2cae0725ac497199a3 https://www.encodeproject.org/files/ENCFF152LFC/@@download/ENCFF152LFC.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF971SCT bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF643CGH 472570860 ENCODE Processing Pipeline 9eaec2d05a81390fbcccbb348bbaaccf https://www.encodeproject.org/files/ENCFF971SCT/@@download/ENCFF971SCT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF163XSL bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF643CGH 1028045683 ENCODE Processing Pipeline ca95d4f9dcce0229400b69e1267ba40a https://www.encodeproject.org/files/ENCFF163XSL/@@download/ENCFF163XSL.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF809UVF bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF643CGH 712812891 ENCODE Processing Pipeline d5040a8a3f66f50ef633e709509d02ad https://www.encodeproject.org/files/ENCFF809UVF/@@download/ENCFF809UVF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF460NNC bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 76 ENCFF643CGH, ENCFF968YZD 1635013440 ENCODE Processing Pipeline ebe8ad95ffe53edc9ff8499c985b47a7 https://www.encodeproject.org/files/ENCFF460NNC/@@download/ENCFF460NNC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF039BDP bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 76 ENCFF137VYP, ENCFF643CGH 516572193 ENCODE Processing Pipeline c5fd2e5e74128a86a7f25f439f55a645 https://www.encodeproject.org/files/ENCFF039BDP/@@download/ENCFF039BDP.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF151GOI bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF643CGH 591346572 ENCODE Processing Pipeline 386cd41c15bee84a2fd42a5e926f0295 https://www.encodeproject.org/files/ENCFF151GOI/@@download/ENCFF151GOI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF540DXB bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF643CGH 947719624 ENCODE Processing Pipeline f138ff61b48f7f4a7819d79925731769 https://www.encodeproject.org/files/ENCFF540DXB/@@download/ENCFF540DXB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF098PQX bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF643CGH 733295413 ENCODE Processing Pipeline b9447a5891a3b21c3970f045e977048a https://www.encodeproject.org/files/ENCFF098PQX/@@download/ENCFF098PQX.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF984CRF bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF643CGH, ENCFF935HUK 1436672842 ENCODE Processing Pipeline 5f5c684a6a2595bfaca3c238a773b15d https://www.encodeproject.org/files/ENCFF984CRF/@@download/ENCFF984CRF.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF607NRH bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF643CGH 719804904 ENCODE Processing Pipeline 9ad9592bc4c6f64555642d3936b037b2 https://www.encodeproject.org/files/ENCFF607NRH/@@download/ENCFF607NRH.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962DWV bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF643CGH 920276125 ENCODE Processing Pipeline 17a3c93dd9e6907fd004848e1b57718d https://www.encodeproject.org/files/ENCFF962DWV/@@download/ENCFF962DWV.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500YYZ bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF643CGH, ENCFF845FIV 3823902143 ENCODE Processing Pipeline 47cc1ad8f932c7a6dada82bb38d05a30 https://www.encodeproject.org/files/ENCFF500YYZ/@@download/ENCFF500YYZ.bam GRCh38 released ENCFF717OYW bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF643CGH, ENCFF776VEC, ENCFF824ADC 4899233705 ENCODE Processing Pipeline 010d8d9a8297f4fe2ee8886476426617 https://www.encodeproject.org/files/ENCFF717OYW/@@download/ENCFF717OYW.bam GRCh38 released ENCFF069MCY bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF643CGH 818367496 ENCODE Processing Pipeline 408a7afced3ef08ad6bcdd71142131d7 https://www.encodeproject.org/files/ENCFF069MCY/@@download/ENCFF069MCY.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF131TIR bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF643CGH 876519024 ENCODE Processing Pipeline aa5d86cc01e63dfafe6af2ed118e7bb9 https://www.encodeproject.org/files/ENCFF131TIR/@@download/ENCFF131TIR.bam GRCh38 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF887VLI bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF643CGH 292554722 ENCODE Processing Pipeline b16c22ae2e6c80ad799a48fe1a16916f https://www.encodeproject.org/files/ENCFF887VLI/@@download/ENCFF887VLI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF971QGY bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF643CGH 1038867562 ENCODE Processing Pipeline 3a4dbe346ccfca984b17fdda6d2e6bda https://www.encodeproject.org/files/ENCFF971QGY/@@download/ENCFF971QGY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF712JVJ bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF643CGH 301598600 ENCODE Processing Pipeline 75da9772f1ff33b07e9dc04a23fb8200 https://www.encodeproject.org/files/ENCFF712JVJ/@@download/ENCFF712JVJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF641XBG bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF643CGH 416855692 ENCODE Processing Pipeline 34dc5526bf5cf0d34c4cb9eb792464ed https://www.encodeproject.org/files/ENCFF641XBG/@@download/ENCFF641XBG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF185VII bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF643CGH 338082963 ENCODE Processing Pipeline 4a8a8381e0914e1eb1fe8db9199b6771 https://www.encodeproject.org/files/ENCFF185VII/@@download/ENCFF185VII.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF658FLY bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF643CGH 318926088 ENCODE Processing Pipeline 6fcd38f28253a3831d846959d5c4a055 https://www.encodeproject.org/files/ENCFF658FLY/@@download/ENCFF658FLY.bam GRCh38 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF812FMM bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF643CGH 608698216 ENCODE Processing Pipeline 1803f83c2e72217b2dff903b4a74277a https://www.encodeproject.org/files/ENCFF812FMM/@@download/ENCFF812FMM.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF035PHI bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF643CGH 760575740 ENCODE Processing Pipeline f39013adeb2d4a6629e4599297da43cc https://www.encodeproject.org/files/ENCFF035PHI/@@download/ENCFF035PHI.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF145QDZ bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF643CGH 568780266 ENCODE Processing Pipeline 3de5d361afbda850464d5602435d5321 https://www.encodeproject.org/files/ENCFF145QDZ/@@download/ENCFF145QDZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF453OOT bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF643CGH 614922183 ENCODE Processing Pipeline c1f52b93231090d956737dbeac379260 https://www.encodeproject.org/files/ENCFF453OOT/@@download/ENCFF453OOT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF591PPT bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF643CGH 697360733 ENCODE Processing Pipeline e2ffd63f46e78e0eb6c0bd0a5b568a35 https://www.encodeproject.org/files/ENCFF591PPT/@@download/ENCFF591PPT.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF684WXH bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF643CGH 1195087170 ENCODE Processing Pipeline bf5b75d7b73c57e78d757ebc365cf4cd https://www.encodeproject.org/files/ENCFF684WXH/@@download/ENCFF684WXH.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF209BDU bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF643CGH 451689962 ENCODE Processing Pipeline 652b1220e89e8ceb3e19cf3d1d59aeb8 https://www.encodeproject.org/files/ENCFF209BDU/@@download/ENCFF209BDU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF908YKV bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF643CGH 459543879 ENCODE Processing Pipeline 5301419166407b2067c389d4bd2e8489 https://www.encodeproject.org/files/ENCFF908YKV/@@download/ENCFF908YKV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF517CVH bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF643CGH 273329782 ENCODE Processing Pipeline 077aa2a367463886c4abff2ff669f3f1 https://www.encodeproject.org/files/ENCFF517CVH/@@download/ENCFF517CVH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF942ZJL bam alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF643CGH 1117921279 ENCODE Processing Pipeline e29041ea7f35a3d5d9ec61d36b50dadd https://www.encodeproject.org/files/ENCFF942ZJL/@@download/ENCFF942ZJL.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF894EID bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF643CGH 473312374 ENCODE Processing Pipeline 54a9b1c6eb2cb3ae493132121dbe776e https://www.encodeproject.org/files/ENCFF894EID/@@download/ENCFF894EID.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF569QEN bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF643CGH 521791845 ENCODE Processing Pipeline 80b445f0a422ba4c8c19d56dd7bcba4e https://www.encodeproject.org/files/ENCFF569QEN/@@download/ENCFF569QEN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF172VKS bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF643CGH 463794807 ENCODE Processing Pipeline cd50556102eec8e147561ae550d501e9 https://www.encodeproject.org/files/ENCFF172VKS/@@download/ENCFF172VKS.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF009UJV bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF643CGH 433316885 ENCODE Processing Pipeline 402fe62448dc84de66216044274bbc84 https://www.encodeproject.org/files/ENCFF009UJV/@@download/ENCFF009UJV.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF894PHG bam alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF643CGH 4154017074 ENCODE Processing Pipeline 0772d273acb85c039943f8521d8888d5 https://www.encodeproject.org/files/ENCFF894PHG/@@download/ENCFF894PHG.bam GRCh38 released antibody characterized with exemption ENCFF068GBU bam alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF643CGH 2205653343 ENCODE Processing Pipeline d681837b40bc4b847516269d71d8a788 https://www.encodeproject.org/files/ENCFF068GBU/@@download/ENCFF068GBU.bam GRCh38 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF081HVQ bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HTO, ENCFF643CGH 597731784 ENCODE Processing Pipeline 07f9ceb669ce1bbfed2f9297f1efd4c1 https://www.encodeproject.org/files/ENCFF081HVQ/@@download/ENCFF081HVQ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF494VZW bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HTP, ENCFF643CGH 249557976 ENCODE Processing Pipeline aed92b2a66e0bf7405ea28c2af55d38d https://www.encodeproject.org/files/ENCFF494VZW/@@download/ENCFF494VZW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF211VKF bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF643CGH 698249290 ENCODE Processing Pipeline 6626faa93046e45f91b9749e7720e5f4 https://www.encodeproject.org/files/ENCFF211VKF/@@download/ENCFF211VKF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF784XUE bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF643CGH 678598622 ENCODE Processing Pipeline 5d5f013d724c685dac6506f9068010b7 https://www.encodeproject.org/files/ENCFF784XUE/@@download/ENCFF784XUE.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF576IPP bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF643CGH 305648366 ENCODE Processing Pipeline 8edcde826c0022c81729d1c40dede8fd https://www.encodeproject.org/files/ENCFF576IPP/@@download/ENCFF576IPP.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF933ITF bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF643CGH 1154832818 ENCODE Processing Pipeline 12800ef7bff25b722667920f9a97c1ea https://www.encodeproject.org/files/ENCFF933ITF/@@download/ENCFF933ITF.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF411JMW bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF643CGH 873204021 ENCODE Processing Pipeline 94fcf4bbec9fa82de5db5ab138e066fa https://www.encodeproject.org/files/ENCFF411JMW/@@download/ENCFF411JMW.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF757MUH bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF643CGH 966284638 ENCODE Processing Pipeline 8b66aab192c6692c829177c08486aa04 https://www.encodeproject.org/files/ENCFF757MUH/@@download/ENCFF757MUH.bam GRCh38 released low read length experiment not submitted to GEO partially characterized antibody ENCFF025QKV bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF643CGH 169434641 ENCODE Processing Pipeline b23c6ea894f93cd5ba65a7481643724b https://www.encodeproject.org/files/ENCFF025QKV/@@download/ENCFF025QKV.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF919HAZ bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF643CGH 204759997 ENCODE Processing Pipeline 73ac3660da4132b949317eb9a4589d20 https://www.encodeproject.org/files/ENCFF919HAZ/@@download/ENCFF919HAZ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF610QSE bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF643CGH 625236292 ENCODE Processing Pipeline 5158b305198e54deecaaf18cf448a89d https://www.encodeproject.org/files/ENCFF610QSE/@@download/ENCFF610QSE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF144LJX bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF643CGH 782324882 ENCODE Processing Pipeline 8acb3a2daba8b196cdac5d228a0d2912 https://www.encodeproject.org/files/ENCFF144LJX/@@download/ENCFF144LJX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF036AJQ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF643CGH 634258317 ENCODE Processing Pipeline 02ea338e0c40710b93cf233413b7234d https://www.encodeproject.org/files/ENCFF036AJQ/@@download/ENCFF036AJQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF881THF bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF643CGH 561255333 ENCODE Processing Pipeline 1266844959aedf1186736d96e558d651 https://www.encodeproject.org/files/ENCFF881THF/@@download/ENCFF881THF.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF189DMF bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF643CGH 735651956 ENCODE Processing Pipeline b13ca4c87c6add46e307fa3288781efe https://www.encodeproject.org/files/ENCFF189DMF/@@download/ENCFF189DMF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF926BIU bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF643CGH 606772471 ENCODE Processing Pipeline 9a89b67e1c96ff07478d3dcbf0297867 https://www.encodeproject.org/files/ENCFF926BIU/@@download/ENCFF926BIU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF289YVM bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF643CGH 442490409 ENCODE Processing Pipeline 37fd30462d8d41f254c0eb0e4b337018 https://www.encodeproject.org/files/ENCFF289YVM/@@download/ENCFF289YVM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF163HDB bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF643CGH 639062899 ENCODE Processing Pipeline 99daa5cff601df1f27f366e87e907180 https://www.encodeproject.org/files/ENCFF163HDB/@@download/ENCFF163HDB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF525MRS bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF643CGH 403400647 ENCODE Processing Pipeline a7135f77dedb2fdcfe4a229f39fe201b https://www.encodeproject.org/files/ENCFF525MRS/@@download/ENCFF525MRS.bam GRCh38 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF639IFG bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF643CGH 188746385 ENCODE Processing Pipeline 9b1c0b9f4dd55c40acd2a5ccb58cef15 https://www.encodeproject.org/files/ENCFF639IFG/@@download/ENCFF639IFG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF691NNZ bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF643CGH 366534910 ENCODE Processing Pipeline 63e7d7e69c7089f8d11abe0dec606637 https://www.encodeproject.org/files/ENCFF691NNZ/@@download/ENCFF691NNZ.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF930EXY bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF643CGH 621893194 ENCODE Processing Pipeline 40d33abb66b12e2c281d1ccfcbb9873b https://www.encodeproject.org/files/ENCFF930EXY/@@download/ENCFF930EXY.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF418EVV bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF643CGH 691222732 ENCODE Processing Pipeline 8f382f96185d4ff77d6461257262ae58 https://www.encodeproject.org/files/ENCFF418EVV/@@download/ENCFF418EVV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF239WGU bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF643CGH 541778030 ENCODE Processing Pipeline defe79b1ad642d1ee6703330b7824c49 https://www.encodeproject.org/files/ENCFF239WGU/@@download/ENCFF239WGU.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF836IMK bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF643CGH 502999154 ENCODE Processing Pipeline 6530c1ad8bcb55773d9bc36097c98042 https://www.encodeproject.org/files/ENCFF836IMK/@@download/ENCFF836IMK.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF225NQU bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF643CGH 521793900 ENCODE Processing Pipeline 5ddecebb87400f89fc2fe6881c92befd https://www.encodeproject.org/files/ENCFF225NQU/@@download/ENCFF225NQU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF730ZVL bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF643CGH 437675477 ENCODE Processing Pipeline 5c02a50ef3a630d971430c747de8e3eb https://www.encodeproject.org/files/ENCFF730ZVL/@@download/ENCFF730ZVL.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF651CKC bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF643CGH 385032379 ENCODE Processing Pipeline 8f751ad8b35b8f15afbe2fae0131e191 https://www.encodeproject.org/files/ENCFF651CKC/@@download/ENCFF651CKC.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF271LZR bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF643CGH 494230308 ENCODE Processing Pipeline defe8ed30ab76661213587a2ed4921a9 https://www.encodeproject.org/files/ENCFF271LZR/@@download/ENCFF271LZR.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF832UST bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF643CGH 506260300 ENCODE Processing Pipeline 9fc4c76466445f66609839c6a0ba861f https://www.encodeproject.org/files/ENCFF832UST/@@download/ENCFF832UST.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF120MJN bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF643CGH 486600264 ENCODE Processing Pipeline f8a93b3a26bb0dd1fb9ace88406aa029 https://www.encodeproject.org/files/ENCFF120MJN/@@download/ENCFF120MJN.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF056OHH bam alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF643CGH 357614968 ENCODE Processing Pipeline 8b6619c3d8276d4ed972c877de848362 https://www.encodeproject.org/files/ENCFF056OHH/@@download/ENCFF056OHH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF822UJU bam alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF643CGH 1123168788 ENCODE Processing Pipeline f840b1baa32995d99bee414d95e5d253 https://www.encodeproject.org/files/ENCFF822UJU/@@download/ENCFF822UJU.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF994GKJ bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF643CGH 725130559 ENCODE Processing Pipeline eff8c8a18ad446560b3d437847852a89 https://www.encodeproject.org/files/ENCFF994GKJ/@@download/ENCFF994GKJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF909BWR bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF643CGH 541016935 ENCODE Processing Pipeline ebb1189a00352b0c6c8a4128b03aa7f5 https://www.encodeproject.org/files/ENCFF909BWR/@@download/ENCFF909BWR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF677PSB bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF643CGH 459436252 ENCODE Processing Pipeline 2dda0cb5d35703eacb7eafb91501fc8d https://www.encodeproject.org/files/ENCFF677PSB/@@download/ENCFF677PSB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF514FUP bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF643CGH 786330634 ENCODE Processing Pipeline a6b261d0edf53b4af50899b40b833d98 https://www.encodeproject.org/files/ENCFF514FUP/@@download/ENCFF514FUP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF953FZD bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF643CGH 605880899 ENCODE Processing Pipeline 1d2820baecd9838cd659b9b56ba14d48 https://www.encodeproject.org/files/ENCFF953FZD/@@download/ENCFF953FZD.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF352YDX bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF643CGH 778153833 ENCODE Processing Pipeline 11301d1c9fd88a8f468db53f2fc550b4 https://www.encodeproject.org/files/ENCFF352YDX/@@download/ENCFF352YDX.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF739WOA bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF643CGH 392817975 ENCODE Processing Pipeline 4428b15a555c77ac33aef0c17e61b465 https://www.encodeproject.org/files/ENCFF739WOA/@@download/ENCFF739WOA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF033GIO bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF643CGH, ENCFF733YBM 388047977 ENCODE Processing Pipeline fd9983453030ad767b243b073326c185 https://www.encodeproject.org/files/ENCFF033GIO/@@download/ENCFF033GIO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF784CCE bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF643CGH 585835530 ENCODE Processing Pipeline 511e2444d15459920efc4620c1f064b6 https://www.encodeproject.org/files/ENCFF784CCE/@@download/ENCFF784CCE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF231RDV bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF643CGH 806886189 ENCODE Processing Pipeline 9ac9ff9cf88c8e8c5ce4ef1a978c47d2 https://www.encodeproject.org/files/ENCFF231RDV/@@download/ENCFF231RDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF995ZRC bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF643CGH, ENCFF766EXH 6672973207 ENCODE Processing Pipeline 037e7e0591c3aff489493806d45d19f3 https://www.encodeproject.org/files/ENCFF995ZRC/@@download/ENCFF995ZRC.bam GRCh38 released ENCFF364TGY bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF643CGH, ENCFF859KHK 7865496416 ENCODE Processing Pipeline d8f842d806d85e27531bf47557905e04 https://www.encodeproject.org/files/ENCFF364TGY/@@download/ENCFF364TGY.bam GRCh38 released ENCFF377YXP bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF643CGH 546985881 ENCODE Processing Pipeline 64687a899b5ccec376e660db9b185b95 https://www.encodeproject.org/files/ENCFF377YXP/@@download/ENCFF377YXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF169JOK bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF643CGH 863716625 ENCODE Processing Pipeline 6745d10dd6906d628e012d20ad875700 https://www.encodeproject.org/files/ENCFF169JOK/@@download/ENCFF169JOK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF261PTK bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF643CGH 675205759 ENCODE Processing Pipeline 7e569bbf7a4cd3fd41c5667dabe68a4f https://www.encodeproject.org/files/ENCFF261PTK/@@download/ENCFF261PTK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF838XZA bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF643CGH 808765999 ENCODE Processing Pipeline 28ef492d202566e22ae62ed0fa6c40b9 https://www.encodeproject.org/files/ENCFF838XZA/@@download/ENCFF838XZA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF951ITB bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF643CGH 208193514 ENCODE Processing Pipeline f27dfde5d70ace56e3cfbfb08b2e40c6 https://www.encodeproject.org/files/ENCFF951ITB/@@download/ENCFF951ITB.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF876GQO bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF643CGH 314736574 ENCODE Processing Pipeline d3bb42653dffa200637fb82f4ecf5e63 https://www.encodeproject.org/files/ENCFF876GQO/@@download/ENCFF876GQO.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF267HPS bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF643CGH 497538017 ENCODE Processing Pipeline 4a701144076a539bdcd6506d3a95afbc https://www.encodeproject.org/files/ENCFF267HPS/@@download/ENCFF267HPS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF824EFD bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF643CGH 421441353 ENCODE Processing Pipeline 6e30dd8727c95f305a3497a8f4dae528 https://www.encodeproject.org/files/ENCFF824EFD/@@download/ENCFF824EFD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF647KJA bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF643CGH 997744642 ENCODE Processing Pipeline cccf691f586ebac0c80deaede5abc04f https://www.encodeproject.org/files/ENCFF647KJA/@@download/ENCFF647KJA.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF288FQY bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF643CGH 880352057 ENCODE Processing Pipeline c5f06aef1fea8b44f8786db1299d8cad https://www.encodeproject.org/files/ENCFF288FQY/@@download/ENCFF288FQY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF337NPB bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF643CGH 549580794 ENCODE Processing Pipeline 3f030c8670f5e6f49196949f51f5bc40 https://www.encodeproject.org/files/ENCFF337NPB/@@download/ENCFF337NPB.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF460RPS bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF643CGH 450263088 ENCODE Processing Pipeline 00bef0e08b9b9ec1d17298e869d27afe https://www.encodeproject.org/files/ENCFF460RPS/@@download/ENCFF460RPS.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF188GPG bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF643CGH 514810980 ENCODE Processing Pipeline 55fca4a0e1247ece0b7456fab57fc2f2 https://www.encodeproject.org/files/ENCFF188GPG/@@download/ENCFF188GPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF030DWK bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF643CGH 839594124 ENCODE Processing Pipeline 250a4614c5f1328c235f4075acafe40f https://www.encodeproject.org/files/ENCFF030DWK/@@download/ENCFF030DWK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF230AXK bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF643CGH 673074017 ENCODE Processing Pipeline 97ddef74c908182c168ca023ac06abe3 https://www.encodeproject.org/files/ENCFF230AXK/@@download/ENCFF230AXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF524SJJ bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF643CGH 831996692 ENCODE Processing Pipeline 932ce9033c058f65999d7cf311fab01e https://www.encodeproject.org/files/ENCFF524SJJ/@@download/ENCFF524SJJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF383IOB bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF643CGH 364236391 ENCODE Processing Pipeline a40dc92b6dcfd40cf1a8f0c957b945c8 https://www.encodeproject.org/files/ENCFF383IOB/@@download/ENCFF383IOB.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF655BNX bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF643CGH 574513925 ENCODE Processing Pipeline 2150f383edd10e9caf96d36c68179b38 https://www.encodeproject.org/files/ENCFF655BNX/@@download/ENCFF655BNX.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF505IMK bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF643CGH 415909374 ENCODE Processing Pipeline e414cf309e4fab2d8ccd6da4f2b360eb https://www.encodeproject.org/files/ENCFF505IMK/@@download/ENCFF505IMK.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF107SFO bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF643CGH 737241895 ENCODE Processing Pipeline 822fe781483acc9b1d2225c0f120eda8 https://www.encodeproject.org/files/ENCFF107SFO/@@download/ENCFF107SFO.bam GRCh38 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF839CKS bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF643CGH 928811695 ENCODE Processing Pipeline 903d5fc8994fcaf4f6a58e9110b639c3 https://www.encodeproject.org/files/ENCFF839CKS/@@download/ENCFF839CKS.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF181VQE bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF643CGH 1088567112 ENCODE Processing Pipeline ddf620aed437a4f36a1a8be529357e08 https://www.encodeproject.org/files/ENCFF181VQE/@@download/ENCFF181VQE.bam GRCh38 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF381LYV bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF643CGH 525310519 ENCODE Processing Pipeline 96cba2665f08997fa4f908873126fee6 https://www.encodeproject.org/files/ENCFF381LYV/@@download/ENCFF381LYV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF587SXK bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF643CGH 507809687 ENCODE Processing Pipeline ff67fa079586dce383fcb28b92690101 https://www.encodeproject.org/files/ENCFF587SXK/@@download/ENCFF587SXK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF642RHD bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF643CGH 134875210 ENCODE Processing Pipeline 3c6c95bbbcd50a50d3d7d09d97805e25 https://www.encodeproject.org/files/ENCFF642RHD/@@download/ENCFF642RHD.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF788ICY bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF643CGH 287789880 ENCODE Processing Pipeline f4a5760806922d80838b7c5e3e6695bf https://www.encodeproject.org/files/ENCFF788ICY/@@download/ENCFF788ICY.bam GRCh38 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF264UCL bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF643CGH 1074831096 ENCODE Processing Pipeline 6ed004206c5ed62214318acbde6f27aa https://www.encodeproject.org/files/ENCFF264UCL/@@download/ENCFF264UCL.bam GRCh38 released low read length biological replicates with identical biosample ENCFF204HXG bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF643CGH 1214416425 ENCODE Processing Pipeline 00719feb2c4be53716f8bf9b44d77965 https://www.encodeproject.org/files/ENCFF204HXG/@@download/ENCFF204HXG.bam GRCh38 released low read length biological replicates with identical biosample ENCFF100VNU bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF643CGH 492700527 ENCODE Processing Pipeline 136bdc266af65fa315799ccb4a6d63f0 https://www.encodeproject.org/files/ENCFF100VNU/@@download/ENCFF100VNU.bam GRCh38 released low read length, low read depth ENCFF276UEG bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF643CGH 558617573 ENCODE Processing Pipeline 0875ea92aa48e697805607702a5634fe https://www.encodeproject.org/files/ENCFF276UEG/@@download/ENCFF276UEG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF606LJM bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF643CGH 718525469 ENCODE Processing Pipeline b62a0df7c7b15f07e81b07b960a9ca93 https://www.encodeproject.org/files/ENCFF606LJM/@@download/ENCFF606LJM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF615LHE bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF643CGH 670372018 ENCODE Processing Pipeline 8ba23fac29c083f98b6888f50f2d240a https://www.encodeproject.org/files/ENCFF615LHE/@@download/ENCFF615LHE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF194DLC bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF643CGH 818194425 ENCODE Processing Pipeline a0a368889f30f8625b6e8f19085bf032 https://www.encodeproject.org/files/ENCFF194DLC/@@download/ENCFF194DLC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF017ICG bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF643CGH 738979337 ENCODE Processing Pipeline 537be262ca266352e2b1695b8813154c https://www.encodeproject.org/files/ENCFF017ICG/@@download/ENCFF017ICG.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF655YHQ bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF643CGH 779458256 ENCODE Processing Pipeline b2dcdbac716f2d9f970a7fabc7c7f79a https://www.encodeproject.org/files/ENCFF655YHQ/@@download/ENCFF655YHQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198CVB bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLW, ENCFF643CGH 876019621 ENCODE Processing Pipeline 4bb960de776e79168519be328d422b70 https://www.encodeproject.org/files/ENCFF198CVB/@@download/ENCFF198CVB.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF488CXC bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLY, ENCFF643CGH 910627192 ENCODE Processing Pipeline 0ef9641acc39df50dbef730925795f46 https://www.encodeproject.org/files/ENCFF488CXC/@@download/ENCFF488CXC.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF326SGF bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF643CGH 1132486383 ENCODE Processing Pipeline cbdceb41f91a4161281c8416c23356ff https://www.encodeproject.org/files/ENCFF326SGF/@@download/ENCFF326SGF.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF420BSH bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF643CGH 1054977767 ENCODE Processing Pipeline 655c1782d9e80b8066df9847e5508d51 https://www.encodeproject.org/files/ENCFF420BSH/@@download/ENCFF420BSH.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF623YND bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF643CGH, ENCFF802HNQ, ENCFF954DSX 5631814140 ENCODE Processing Pipeline 41439d9507359c2f32611348377818a0 https://www.encodeproject.org/files/ENCFF623YND/@@download/ENCFF623YND.bam GRCh38 released antibody characterized with exemption ENCFF247NIG bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF643CGH, ENCFF827PIQ, ENCFF949SIP 6400140295 ENCODE Processing Pipeline 183625b1d8a957619a46a2c28c89c23f https://www.encodeproject.org/files/ENCFF247NIG/@@download/ENCFF247NIG.bam GRCh38 released antibody characterized with exemption ENCFF708KXW bam alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF643CGH 637717931 ENCODE Processing Pipeline 2e83999c9cc8ad33478fd0c0886f44d0 https://www.encodeproject.org/files/ENCFF708KXW/@@download/ENCFF708KXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF891GFG bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF643CGH 151136506 ENCODE Processing Pipeline 13c7b475820f057f029d42e5126c1d63 https://www.encodeproject.org/files/ENCFF891GFG/@@download/ENCFF891GFG.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF094FZQ bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF643CGH 146679334 ENCODE Processing Pipeline 25fda2567233b7d71b76970d7bd83bf3 https://www.encodeproject.org/files/ENCFF094FZQ/@@download/ENCFF094FZQ.bam GRCh38 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF179DZP bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF643CGH 1009499620 ENCODE Processing Pipeline 203e5b677d986af466c7c1aa5b23528e https://www.encodeproject.org/files/ENCFF179DZP/@@download/ENCFF179DZP.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF022IWG bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF643CGH, ENCFF796BOA 1110930941 ENCODE Processing Pipeline 2d7b6ff4a50d0ca7899669eace8ef953 https://www.encodeproject.org/files/ENCFF022IWG/@@download/ENCFF022IWG.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF958UOJ bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 304648498 ENCODE Processing Pipeline 083601450f56798b115d1b8bdabd8aea https://www.encodeproject.org/files/ENCFF958UOJ/@@download/ENCFF958UOJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF755LCI bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YAT, ENCFF643CGH 746644790 ENCODE Processing Pipeline 53d2be44ad0d4c75023fa607b23338c8 https://www.encodeproject.org/files/ENCFF755LCI/@@download/ENCFF755LCI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF865ULF bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF643CGH 813253357 ENCODE Processing Pipeline 22b841ec655c0de6cdc3c1ca5de2dc11 https://www.encodeproject.org/files/ENCFF865ULF/@@download/ENCFF865ULF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF272PYA bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF643CGH 304648494 ENCODE Processing Pipeline 08b1486505dad066f1c00dd02998482b https://www.encodeproject.org/files/ENCFF272PYA/@@download/ENCFF272PYA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF619AJU bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF643CGH 603421799 ENCODE Processing Pipeline 9f1bdc27de6edbae72f98bcdab698bfe https://www.encodeproject.org/files/ENCFF619AJU/@@download/ENCFF619AJU.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF698XSR bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF643CGH 802436260 ENCODE Processing Pipeline d7da76f447d2407f19f9f5a8beb32989 https://www.encodeproject.org/files/ENCFF698XSR/@@download/ENCFF698XSR.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF714CRL bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF643CGH 636745391 ENCODE Processing Pipeline 9b65b00f514227d3fc9fa9c912452220 https://www.encodeproject.org/files/ENCFF714CRL/@@download/ENCFF714CRL.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF824KPX bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF643CGH 1268818315 ENCODE Processing Pipeline 48b146746f1b99b08e465e55fedca68b https://www.encodeproject.org/files/ENCFF824KPX/@@download/ENCFF824KPX.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF282LOM bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WZA, ENCFF643CGH 660130466 ENCODE Processing Pipeline cc99ba698e1017a23af65955e7d32668 https://www.encodeproject.org/files/ENCFF282LOM/@@download/ENCFF282LOM.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF554BHA bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WYY, ENCFF643CGH 667470387 ENCODE Processing Pipeline 76308b340cd3e4e9673318768bad4927 https://www.encodeproject.org/files/ENCFF554BHA/@@download/ENCFF554BHA.bam GRCh38 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF002PNZ bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF643CGH 5606367215 ENCODE Processing Pipeline 11aa9814636ded704a8a79a070202559 https://www.encodeproject.org/files/ENCFF002PNZ/@@download/ENCFF002PNZ.bam GRCh38 released missing genetic modification characterization ENCFF346SNT bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF643CGH 5724769452 ENCODE Processing Pipeline a3a472c27be53e071a704fba11e5eb4b https://www.encodeproject.org/files/ENCFF346SNT/@@download/ENCFF346SNT.bam GRCh38 released missing genetic modification characterization ENCFF944TNR bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF643CGH 274238842 ENCODE Processing Pipeline 9048ecf5a29639ce3c547825ecd8d177 https://www.encodeproject.org/files/ENCFF944TNR/@@download/ENCFF944TNR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF788OKP bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF643CGH 662828120 ENCODE Processing Pipeline 95da6df39998ba07734f11183bb16fe4 https://www.encodeproject.org/files/ENCFF788OKP/@@download/ENCFF788OKP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF614SHU bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF643CGH 477999391 ENCODE Processing Pipeline 8abd6f677c6103e06df480f379e31b18 https://www.encodeproject.org/files/ENCFF614SHU/@@download/ENCFF614SHU.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF475VQL bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF643CGH 935790985 ENCODE Processing Pipeline df19eeb9088288e455d4947a29b5289e https://www.encodeproject.org/files/ENCFF475VQL/@@download/ENCFF475VQL.bam GRCh38 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF361FRE bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF643CGH 218191852 ENCODE Processing Pipeline c3dcbb188845e1c2101b5ef2a9e876be https://www.encodeproject.org/files/ENCFF361FRE/@@download/ENCFF361FRE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF816OHX bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF643CGH 557367354 ENCODE Processing Pipeline d7b8e87b689e28e7285681c4145fcfb9 https://www.encodeproject.org/files/ENCFF816OHX/@@download/ENCFF816OHX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF912PMA bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF643CGH 634374726 ENCODE Processing Pipeline 07aafe3c4016afcdb99fbcad7ea44039 https://www.encodeproject.org/files/ENCFF912PMA/@@download/ENCFF912PMA.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF142OZB bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF643CGH 863215710 ENCODE Processing Pipeline 1b9d22bac49807c9af25af40c3a9fb78 https://www.encodeproject.org/files/ENCFF142OZB/@@download/ENCFF142OZB.bam GRCh38 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF154YWN bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF643CGH 791517832 ENCODE Processing Pipeline 073b0a1daaea664f66b11bbe27949b31 https://www.encodeproject.org/files/ENCFF154YWN/@@download/ENCFF154YWN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF634AOY bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF643CGH 946707855 ENCODE Processing Pipeline 5d2a203956f88a04d7772f830cd85bf4 https://www.encodeproject.org/files/ENCFF634AOY/@@download/ENCFF634AOY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF703ZWI bam alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF643CGH, ENCFF803CMG 3707748864 ENCODE Processing Pipeline bc7d7f1ae77ae17ed9424fc07ad85bdf https://www.encodeproject.org/files/ENCFF703ZWI/@@download/ENCFF703ZWI.bam GRCh38 released antibody characterized with exemption ENCFF771NSF bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF643CGH 276186923 ENCODE Processing Pipeline 7101ac688edca5349b6ca3cd98d035fc https://www.encodeproject.org/files/ENCFF771NSF/@@download/ENCFF771NSF.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF078BWN bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF643CGH 239450590 ENCODE Processing Pipeline 701a81562fdb64bdf083a38fa9d08777 https://www.encodeproject.org/files/ENCFF078BWN/@@download/ENCFF078BWN.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF499VEN bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF643CGH, ENCFF988XKO 1443819584 ENCODE Processing Pipeline f300986be2d3dadda8436d7a94a06c58 https://www.encodeproject.org/files/ENCFF499VEN/@@download/ENCFF499VEN.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF376QOH bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF643CGH 2218040920 ENCODE Processing Pipeline 7aef350aa89e0eda59662183e99f966c https://www.encodeproject.org/files/ENCFF376QOH/@@download/ENCFF376QOH.bam GRCh38 released antibody characterized with exemption biological replicates with identical biosample ENCFF880ZXO bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF643CGH 891818812 ENCODE Processing Pipeline 036ad6a56f21e7e33473fdc83b190004 https://www.encodeproject.org/files/ENCFF880ZXO/@@download/ENCFF880ZXO.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF082TOF bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF643CGH 772685495 ENCODE Processing Pipeline 7fe39ce528b6fa92f551d554b5fe39cd https://www.encodeproject.org/files/ENCFF082TOF/@@download/ENCFF082TOF.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF545IDM bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF643CGH 320670996 ENCODE Processing Pipeline 0f96acb6fa9751db1fbb9387fde46455 https://www.encodeproject.org/files/ENCFF545IDM/@@download/ENCFF545IDM.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF993RDX bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF643CGH 407458034 ENCODE Processing Pipeline 931010c8c5260c0d30fd82319062aa09 https://www.encodeproject.org/files/ENCFF993RDX/@@download/ENCFF993RDX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF264CUG bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF643CGH 830194280 ENCODE Processing Pipeline eb18d368c829ad429d23dff0382013bb https://www.encodeproject.org/files/ENCFF264CUG/@@download/ENCFF264CUG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF723RMN bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF643CGH 852129322 ENCODE Processing Pipeline 404e1adbc724c9ac7944fe4e87875a3e https://www.encodeproject.org/files/ENCFF723RMN/@@download/ENCFF723RMN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF888CAT bam alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF643CGH, ENCFF943DRV 5868323236 ENCODE Processing Pipeline a60a9a560e4f1a6e93b61db2fdf466d9 https://www.encodeproject.org/files/ENCFF888CAT/@@download/ENCFF888CAT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF631EDC bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF643CGH 488491027 ENCODE Processing Pipeline 79b70a434137d61163259be9b72f2035 https://www.encodeproject.org/files/ENCFF631EDC/@@download/ENCFF631EDC.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF387CSW bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF643CGH 623675694 ENCODE Processing Pipeline 0a9bfe8211eb73ae3ad9020e62493d9b https://www.encodeproject.org/files/ENCFF387CSW/@@download/ENCFF387CSW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF997MKZ bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF643CGH 492668957 ENCODE Processing Pipeline a405ea91d7bcbc9ff3e731222d17f298 https://www.encodeproject.org/files/ENCFF997MKZ/@@download/ENCFF997MKZ.bam GRCh38 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF523FGX bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF643CGH 856515060 ENCODE Processing Pipeline 55d0a053bfe532eb2cad1af8350dfcfa https://www.encodeproject.org/files/ENCFF523FGX/@@download/ENCFF523FGX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF503TSN bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF643CGH 1384543801 ENCODE Processing Pipeline 836c43e557c985ecac34a6c31d0f9c5e https://www.encodeproject.org/files/ENCFF503TSN/@@download/ENCFF503TSN.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF817VBY bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF643CGH 158418640 ENCODE Processing Pipeline cb38d29390d3266bc0c32826653a9dc4 https://www.encodeproject.org/files/ENCFF817VBY/@@download/ENCFF817VBY.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF267XWV bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF643CGH 146873192 ENCODE Processing Pipeline b6ef47652bb0ead53837797291bf4ee2 https://www.encodeproject.org/files/ENCFF267XWV/@@download/ENCFF267XWV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF651ZZS bam alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF643CGH 5086180150 ENCODE Processing Pipeline 92c0394fa4153ff6c93f7e0a2e5730a1 https://www.encodeproject.org/files/ENCFF651ZZS/@@download/ENCFF651ZZS.bam GRCh38 released antibody characterized with exemption ENCFF150DAE bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF643CGH 729995498 ENCODE Processing Pipeline 3299719394060a96041806b250aa9b4d https://www.encodeproject.org/files/ENCFF150DAE/@@download/ENCFF150DAE.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF360DAO bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF643CGH 1289553420 ENCODE Processing Pipeline 1e38e0f623ed5a38a888a96ae2eac312 https://www.encodeproject.org/files/ENCFF360DAO/@@download/ENCFF360DAO.bam GRCh38 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF910PTH bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF643CGH 358293764 ENCODE Processing Pipeline 477cd0b185bce4a19bea97b1c91c3126 https://www.encodeproject.org/files/ENCFF910PTH/@@download/ENCFF910PTH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF486EWS bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF643CGH 906754509 ENCODE Processing Pipeline 1a12d6499690b9ab5e9421d6125a80c8 https://www.encodeproject.org/files/ENCFF486EWS/@@download/ENCFF486EWS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF282IXA bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF643CGH 981081485 ENCODE Processing Pipeline c7b97e187b2740824f8b0147b39f7501 https://www.encodeproject.org/files/ENCFF282IXA/@@download/ENCFF282IXA.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF662PDI bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF643CGH 901539713 ENCODE Processing Pipeline b2fe55ad1ac050ab6138a627be0cb52e https://www.encodeproject.org/files/ENCFF662PDI/@@download/ENCFF662PDI.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF781JEI bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF643CGH, ENCFF702MJJ 190916888 ENCODE Processing Pipeline 1bac186a0ea890210e8b2c9ef79b8450 https://www.encodeproject.org/files/ENCFF781JEI/@@download/ENCFF781JEI.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF954PRL bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF942JXG 703858140 ENCODE Processing Pipeline 95d84e928bb4a56e97df9c8842b928ba https://www.encodeproject.org/files/ENCFF954PRL/@@download/ENCFF954PRL.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF007QLT bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF643CGH, ENCFF946YUW 902698626 ENCODE Processing Pipeline 0c51fadab7c629225bcb73d4c1b9d609 https://www.encodeproject.org/files/ENCFF007QLT/@@download/ENCFF007QLT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF661OJT bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF643CGH 1241300465 ENCODE Processing Pipeline 44e93caeb21013f860bd4d38bf2fb51a https://www.encodeproject.org/files/ENCFF661OJT/@@download/ENCFF661OJT.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF484ZQH bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF643CGH 649263647 ENCODE Processing Pipeline a137805b04f5ead88a448b33574b9b3d https://www.encodeproject.org/files/ENCFF484ZQH/@@download/ENCFF484ZQH.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF358UEX bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF643CGH 915491574 ENCODE Processing Pipeline 18927c2487202dde9bbdfdca7fbac1d6 https://www.encodeproject.org/files/ENCFF358UEX/@@download/ENCFF358UEX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF580GMF bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF643CGH 602501977 ENCODE Processing Pipeline 94b4053388ea077f3747ac5ca8b62eeb https://www.encodeproject.org/files/ENCFF580GMF/@@download/ENCFF580GMF.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF942EVB bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF643CGH 659787864 ENCODE Processing Pipeline 345745904ae4ca112c8baf19fe967213 https://www.encodeproject.org/files/ENCFF942EVB/@@download/ENCFF942EVB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF017BBF bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF643CGH 908847027 ENCODE Processing Pipeline c23de2cc86d37568e278ec7afdb990e8 https://www.encodeproject.org/files/ENCFF017BBF/@@download/ENCFF017BBF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421BVL bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF643CGH 1345029083 ENCODE Processing Pipeline 30b2e880440c83f4d9d17f10c085d9d8 https://www.encodeproject.org/files/ENCFF421BVL/@@download/ENCFF421BVL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF091ODJ bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF643CGH 565525660 ENCODE Processing Pipeline 0f4a3cf910ec555bd8dc6ada940f6b6e https://www.encodeproject.org/files/ENCFF091ODJ/@@download/ENCFF091ODJ.bam GRCh38 released control low read depth, low read length, low read depth ENCFF648CAE bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF643CGH 490237216 ENCODE Processing Pipeline 077a3fd5542a0dcbb2b8dcb669fe1dad https://www.encodeproject.org/files/ENCFF648CAE/@@download/ENCFF648CAE.bam GRCh38 released control low read depth, low read length, low read depth ENCFF429GKZ bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF643CGH 607674321 ENCODE Processing Pipeline 7d2562bb1d080813f4a515b67bc53bbf https://www.encodeproject.org/files/ENCFF429GKZ/@@download/ENCFF429GKZ.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF139VJW bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF643CGH 755921385 ENCODE Processing Pipeline 167ffb7e11717982d001c00dfc60c082 https://www.encodeproject.org/files/ENCFF139VJW/@@download/ENCFF139VJW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF582CJF bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF643CGH 637033775 ENCODE Processing Pipeline 6cc90749c353d7f1acb6057538d21dd0 https://www.encodeproject.org/files/ENCFF582CJF/@@download/ENCFF582CJF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF270TGL bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF643CGH 999909157 ENCODE Processing Pipeline cb69288d1a08efbb52fb3cd6ac030688 https://www.encodeproject.org/files/ENCFF270TGL/@@download/ENCFF270TGL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF943YXO bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF643CGH 708919716 ENCODE Processing Pipeline 83e6ad79a1a1af8612ce88c028ad39e1 https://www.encodeproject.org/files/ENCFF943YXO/@@download/ENCFF943YXO.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF648XID bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF643CGH 593224117 ENCODE Processing Pipeline 15efca832fefc2dfc37a0f8c26dcb7f9 https://www.encodeproject.org/files/ENCFF648XID/@@download/ENCFF648XID.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF101LKK bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF643CGH 532824893 ENCODE Processing Pipeline 74b843c4f46349b000a06dd94edc8cfb https://www.encodeproject.org/files/ENCFF101LKK/@@download/ENCFF101LKK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF291PCM bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF643CGH 650554870 ENCODE Processing Pipeline 9381f9d76c2b11ead61f24eab4aab760 https://www.encodeproject.org/files/ENCFF291PCM/@@download/ENCFF291PCM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF740NIN bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF643CGH 589768443 ENCODE Processing Pipeline c1b374588893ad0f6bb82588257594a0 https://www.encodeproject.org/files/ENCFF740NIN/@@download/ENCFF740NIN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF446TBL bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF643CGH 859969070 ENCODE Processing Pipeline 246b675d37e5f6194d45531e41027e4d https://www.encodeproject.org/files/ENCFF446TBL/@@download/ENCFF446TBL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF191CWT bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF643CGH 218118299 ENCODE Processing Pipeline 01c112be654a147bc6b9a2cd0d7cdd8d https://www.encodeproject.org/files/ENCFF191CWT/@@download/ENCFF191CWT.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF536TPK bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF643CGH 317252591 ENCODE Processing Pipeline 95913fa521630bb9bf961b90c59c69f7 https://www.encodeproject.org/files/ENCFF536TPK/@@download/ENCFF536TPK.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278LWC bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF643CGH 656700088 ENCODE Processing Pipeline 551e87fd7340bb23f3bd33650a32838f https://www.encodeproject.org/files/ENCFF278LWC/@@download/ENCFF278LWC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF692VVV bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF643CGH 847082509 ENCODE Processing Pipeline f6f58a7c6624da284dd51588dc3853ac https://www.encodeproject.org/files/ENCFF692VVV/@@download/ENCFF692VVV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF297HWT bam alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF643CGH 800528241 ENCODE Processing Pipeline 6aec3473530f36093dedbe371f3a82b9 https://www.encodeproject.org/files/ENCFF297HWT/@@download/ENCFF297HWT.bam GRCh38 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF746GKF bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF643CGH 756491130 ENCODE Processing Pipeline e7d874a94a8bec0a83e919127571ff75 https://www.encodeproject.org/files/ENCFF746GKF/@@download/ENCFF746GKF.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF500WMP bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF643CGH, ENCFF979OQS 844613040 ENCODE Processing Pipeline 53057478df59ed0b9173750db43e0ed6 https://www.encodeproject.org/files/ENCFF500WMP/@@download/ENCFF500WMP.bam GRCh38 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF774RUP bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF643CGH, ENCFF693JKI 4503725850 ENCODE Processing Pipeline da3182d726aca0a28b985e493e142a1d https://www.encodeproject.org/files/ENCFF774RUP/@@download/ENCFF774RUP.bam GRCh38 released missing genetic modification characterization ENCFF892LAS bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF643CGH 5187543119 ENCODE Processing Pipeline 668131cdcfda2364a999d05cac2c0e45 https://www.encodeproject.org/files/ENCFF892LAS/@@download/ENCFF892LAS.bam GRCh38 released missing genetic modification characterization ENCFF160JFP bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF643CGH 769068933 ENCODE Processing Pipeline f51a691bffa5ffa14f3afbd31031e174 https://www.encodeproject.org/files/ENCFF160JFP/@@download/ENCFF160JFP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF296AWB bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF643CGH 775177527 ENCODE Processing Pipeline c83c15cfa6850c98c340cd6e912eb56c https://www.encodeproject.org/files/ENCFF296AWB/@@download/ENCFF296AWB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF431SFJ bam alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF643CGH, ENCFF748ZYI 2730326496 ENCODE Processing Pipeline 4a14041aaddedcb6663ddc960e769ab8 https://www.encodeproject.org/files/ENCFF431SFJ/@@download/ENCFF431SFJ.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF635HIS bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF643CGH 277429956 ENCODE Processing Pipeline af0eecd33dc87a6a4e214b84477d829c https://www.encodeproject.org/files/ENCFF635HIS/@@download/ENCFF635HIS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF360QBV bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF643CGH 688282268 ENCODE Processing Pipeline 23f5992049bd0ba05f6dab41ab1348f6 https://www.encodeproject.org/files/ENCFF360QBV/@@download/ENCFF360QBV.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF374OTR bam alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF643CGH, ENCFF643OCA, ENCFF658ZTF 4679640717 ENCODE Processing Pipeline d7e8ab0247da694c40a5e6c494e2724e https://www.encodeproject.org/files/ENCFF374OTR/@@download/ENCFF374OTR.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF793GQM bam alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF643CGH 4034058403 ENCODE Processing Pipeline 4749459c860ae1511e05b5b9ecbbe7ed https://www.encodeproject.org/files/ENCFF793GQM/@@download/ENCFF793GQM.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF086GHN bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF643CGH 531788765 ENCODE Processing Pipeline 75fa17806be3923ee37f30f39270160a https://www.encodeproject.org/files/ENCFF086GHN/@@download/ENCFF086GHN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF707BSC bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF643CGH 781338093 ENCODE Processing Pipeline 18d0bfa6f2e687db3c001d2e78bd359b https://www.encodeproject.org/files/ENCFF707BSC/@@download/ENCFF707BSC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF499BAH bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF643CGH 551430997 ENCODE Processing Pipeline a56bcb060382acf7e0bac1c03ecb637d https://www.encodeproject.org/files/ENCFF499BAH/@@download/ENCFF499BAH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF056BXB bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF643CGH 338465756 ENCODE Processing Pipeline cef3bbe7226380fd7ee027db02fba1c4 https://www.encodeproject.org/files/ENCFF056BXB/@@download/ENCFF056BXB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF397UQW bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF643CGH 718958398 ENCODE Processing Pipeline d5b6a187a80d622b37b18d49cbc103ae https://www.encodeproject.org/files/ENCFF397UQW/@@download/ENCFF397UQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF218SMD bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF643CGH 748855066 ENCODE Processing Pipeline ac0adc8edfe4346cd349022e03bd0872 https://www.encodeproject.org/files/ENCFF218SMD/@@download/ENCFF218SMD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF881YOO bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF643CGH 805428076 ENCODE Processing Pipeline f8dda5b74132529d02e66347f0a6cf77 https://www.encodeproject.org/files/ENCFF881YOO/@@download/ENCFF881YOO.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF496YAE bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF643CGH 877493992 ENCODE Processing Pipeline 15a9902a96ea99d2817b16b3dfb32b7c https://www.encodeproject.org/files/ENCFF496YAE/@@download/ENCFF496YAE.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF254WNB bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF643CGH 384575975 ENCODE Processing Pipeline dd75130d952c08aa5fa6b9334f7bfcfa https://www.encodeproject.org/files/ENCFF254WNB/@@download/ENCFF254WNB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF952AWV bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF643CGH 517074625 ENCODE Processing Pipeline d86ca3c98b08f67efe8fea8fe2056a23 https://www.encodeproject.org/files/ENCFF952AWV/@@download/ENCFF952AWV.bam GRCh38 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF660BOQ bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF643CGH 1736387728 ENCODE Processing Pipeline 99f1ce41e1a07397b92bff93ed8c7760 https://www.encodeproject.org/files/ENCFF660BOQ/@@download/ENCFF660BOQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF652VQH bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF643CGH 2091313759 ENCODE Processing Pipeline e96fb35d94e27339a57392e97a45a780 https://www.encodeproject.org/files/ENCFF652VQH/@@download/ENCFF652VQH.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF732IVC bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF643CGH 874998410 ENCODE Processing Pipeline 81dcd4a52cb134e1a5445881ce0198bb https://www.encodeproject.org/files/ENCFF732IVC/@@download/ENCFF732IVC.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF016NAV bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF643CGH 932694569 ENCODE Processing Pipeline 118090a062419985ea4fd7c9b37cc4f9 https://www.encodeproject.org/files/ENCFF016NAV/@@download/ENCFF016NAV.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF333LDV bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF643CGH 509766898 ENCODE Processing Pipeline b20c6fb5f5cb5dd71a8a4f12549a7e1e https://www.encodeproject.org/files/ENCFF333LDV/@@download/ENCFF333LDV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF199GHD bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF643CGH 1036280843 ENCODE Processing Pipeline d8162b11739b12a38c2a9d284d58904c https://www.encodeproject.org/files/ENCFF199GHD/@@download/ENCFF199GHD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF113LQX bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF643CGH 422746833 ENCODE Processing Pipeline ec23c7751c102f74c0094d7963b1a996 https://www.encodeproject.org/files/ENCFF113LQX/@@download/ENCFF113LQX.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF815EOF bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF643CGH 405039614 ENCODE Processing Pipeline bf181e172224a18bad7b3d105038bc05 https://www.encodeproject.org/files/ENCFF815EOF/@@download/ENCFF815EOF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF463LMJ bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF643CGH 297505948 ENCODE Processing Pipeline ca3e661fee7e4464b51a128972cdae99 https://www.encodeproject.org/files/ENCFF463LMJ/@@download/ENCFF463LMJ.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF403WNR bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF643CGH 324701596 ENCODE Processing Pipeline 04d0312b2d3e82d850c3fa7cf7cec30d https://www.encodeproject.org/files/ENCFF403WNR/@@download/ENCFF403WNR.bam GRCh38 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF964COC bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF643CGH 777997097 ENCODE Processing Pipeline ade6e3186fd79d0f672ff140df956a95 https://www.encodeproject.org/files/ENCFF964COC/@@download/ENCFF964COC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946HWT bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF643CGH 853885397 ENCODE Processing Pipeline 34c60cf470f247bbe8c7fd659b7c2ae7 https://www.encodeproject.org/files/ENCFF946HWT/@@download/ENCFF946HWT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF662OCA bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF643CGH 193231696 ENCODE Processing Pipeline 666bef890e29124999d639b35ccd7e71 https://www.encodeproject.org/files/ENCFF662OCA/@@download/ENCFF662OCA.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF608EGH bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF643CGH 1368350703 ENCODE Processing Pipeline 8030a0c0863d8565c3c0a17ea5be1420 https://www.encodeproject.org/files/ENCFF608EGH/@@download/ENCFF608EGH.bam GRCh38 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF114YIF bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF643CGH 224896958 ENCODE Processing Pipeline 9bfbf820dd4850b0a36dc19e5c557759 https://www.encodeproject.org/files/ENCFF114YIF/@@download/ENCFF114YIF.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF522JCJ bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF643CGH 427201590 ENCODE Processing Pipeline 4e25b402818aec23701e14c085c8ce18 https://www.encodeproject.org/files/ENCFF522JCJ/@@download/ENCFF522JCJ.bam GRCh38 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF974QRX bam alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF643CGH 456170230 ENCODE Processing Pipeline 17ec0524f538aebc3a5259aa88d012ff https://www.encodeproject.org/files/ENCFF974QRX/@@download/ENCFF974QRX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF548NQU bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF643CGH 479531035 ENCODE Processing Pipeline 07ff5f6f65afbb793b91846125cda5e8 https://www.encodeproject.org/files/ENCFF548NQU/@@download/ENCFF548NQU.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF914ABF bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF643CGH 270958076 ENCODE Processing Pipeline 863b197c419d60d8d92ca3bc359b10dd https://www.encodeproject.org/files/ENCFF914ABF/@@download/ENCFF914ABF.bam GRCh38 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF974ACJ bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF643CGH 683935144 ENCODE Processing Pipeline 2ab9acc5d60a60780e0164b25e19211a https://www.encodeproject.org/files/ENCFF974ACJ/@@download/ENCFF974ACJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF779NYT bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF643CGH 807574166 ENCODE Processing Pipeline 1d26717b06d05c3e8d2765183ed93e73 https://www.encodeproject.org/files/ENCFF779NYT/@@download/ENCFF779NYT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF170NGB bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YSZ, ENCFF643CGH 363853584 ENCODE Processing Pipeline d9b58d6ef740f4969066f700e15c0e79 https://www.encodeproject.org/files/ENCFF170NGB/@@download/ENCFF170NGB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF426DLJ bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YTA, ENCFF643CGH 299202314 ENCODE Processing Pipeline 35e3e23b5d1fb9f9ceb38d31c018d373 https://www.encodeproject.org/files/ENCFF426DLJ/@@download/ENCFF426DLJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF414QUV bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF643CGH 265686298 ENCODE Processing Pipeline d6baea68aa7bb0dca5b6abb7fd14e1ca https://www.encodeproject.org/files/ENCFF414QUV/@@download/ENCFF414QUV.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF616NWB bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF643CGH 452314464 ENCODE Processing Pipeline 57030356d1c1757703878eec6b873b52 https://www.encodeproject.org/files/ENCFF616NWB/@@download/ENCFF616NWB.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF503DXB bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF643CGH 196025177 ENCODE Processing Pipeline cb10c0fd67fe5a01f1bf57cc801e6250 https://www.encodeproject.org/files/ENCFF503DXB/@@download/ENCFF503DXB.bam GRCh38 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF018COR bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF643CGH 932901617 ENCODE Processing Pipeline 8c6acee00b2dd78da3adfe048b3201bf https://www.encodeproject.org/files/ENCFF018COR/@@download/ENCFF018COR.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF842TOK bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF643CGH 1058066427 ENCODE Processing Pipeline cdf6d15e0dfad47e6a028a86387918ef https://www.encodeproject.org/files/ENCFF842TOK/@@download/ENCFF842TOK.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF097IAS bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF643CGH 314797114 ENCODE Processing Pipeline 684a7e4b7da223f5fa771f3da39320fd https://www.encodeproject.org/files/ENCFF097IAS/@@download/ENCFF097IAS.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF620HUP bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF643CGH 1066371719 ENCODE Processing Pipeline 6078b3a01278235e9bb1e6db0b01491d https://www.encodeproject.org/files/ENCFF620HUP/@@download/ENCFF620HUP.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF172IMH bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF643CGH 497461256 ENCODE Processing Pipeline 4683fa852724476f7680733a22327f9e https://www.encodeproject.org/files/ENCFF172IMH/@@download/ENCFF172IMH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF563UBP bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF643CGH 621267194 ENCODE Processing Pipeline f3b8af2b05bb95480cc463816f279cb9 https://www.encodeproject.org/files/ENCFF563UBP/@@download/ENCFF563UBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF703HXP bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF643CGH 530783851 ENCODE Processing Pipeline 2041b2806ad079726fc3c99b017ebbb1 https://www.encodeproject.org/files/ENCFF703HXP/@@download/ENCFF703HXP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF820TDD bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF643CGH 351530786 ENCODE Processing Pipeline d4e15fd35f394bfe77c3279eb9a06479 https://www.encodeproject.org/files/ENCFF820TDD/@@download/ENCFF820TDD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF606OTI bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF643CGH 543595801 ENCODE Processing Pipeline 5b9b482e8b6150aa36d3ba4abf411874 https://www.encodeproject.org/files/ENCFF606OTI/@@download/ENCFF606OTI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF553NXK bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF643CGH 540872914 ENCODE Processing Pipeline ca27b9e25ddc9a9cd3b553585b325238 https://www.encodeproject.org/files/ENCFF553NXK/@@download/ENCFF553NXK.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF105MNZ bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF643CGH 508008558 ENCODE Processing Pipeline c5496b30d83209878e8cb3d59dd672ef https://www.encodeproject.org/files/ENCFF105MNZ/@@download/ENCFF105MNZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF739SSM bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF643CGH 475947461 ENCODE Processing Pipeline c66536d58fb8982f872324199a3ad62b https://www.encodeproject.org/files/ENCFF739SSM/@@download/ENCFF739SSM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF721MRE bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF643CGH 1063217439 ENCODE Processing Pipeline fc51c1b67a25cc7dee62d3c011fa66c4 https://www.encodeproject.org/files/ENCFF721MRE/@@download/ENCFF721MRE.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF668VZA bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF643CGH 797206765 ENCODE Processing Pipeline 648bac8be70ecbcac741f47afb87f4b4 https://www.encodeproject.org/files/ENCFF668VZA/@@download/ENCFF668VZA.bam GRCh38 released low read depth biological replicates with identical biosample ENCFF554KEG bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF643CGH 396985738 ENCODE Processing Pipeline 5de208dd52266608c88b19b9e202a800 https://www.encodeproject.org/files/ENCFF554KEG/@@download/ENCFF554KEG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF339YBR bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF643CGH 538645887 ENCODE Processing Pipeline 755e102a0073dee13ed0d84d5bff6031 https://www.encodeproject.org/files/ENCFF339YBR/@@download/ENCFF339YBR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF578CKQ bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF643CGH, ENCFF932SKI 3147421293 ENCODE Processing Pipeline 981226c9e3eae97907e9176eb13d3d28 https://www.encodeproject.org/files/ENCFF578CKQ/@@download/ENCFF578CKQ.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF707JIA bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF643CGH 3517687856 ENCODE Processing Pipeline 6f90e43bd8e67a3b6aafd8a3deaf59f4 https://www.encodeproject.org/files/ENCFF707JIA/@@download/ENCFF707JIA.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF261NIN bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF643CGH 671727486 ENCODE Processing Pipeline 5e437a7c91772d4f99e8c851d333f3e8 https://www.encodeproject.org/files/ENCFF261NIN/@@download/ENCFF261NIN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF600WBJ bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF643CGH 542771589 ENCODE Processing Pipeline 2d8e790e7728383aac130a20d230b10d https://www.encodeproject.org/files/ENCFF600WBJ/@@download/ENCFF600WBJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF713RXC bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF643CGH 283908308 ENCODE Processing Pipeline 8fd337f7d85d4c84f80b451f7b1d85c0 https://www.encodeproject.org/files/ENCFF713RXC/@@download/ENCFF713RXC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF550DDF bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF643CGH 993132337 ENCODE Processing Pipeline 3034a38142f4f1c4420e7955b81ff66c https://www.encodeproject.org/files/ENCFF550DDF/@@download/ENCFF550DDF.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF173MEF bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF643CGH 234952826 ENCODE Processing Pipeline b6a928e5c745bba4f39e3d5929348316 https://www.encodeproject.org/files/ENCFF173MEF/@@download/ENCFF173MEF.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF041UWI bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF643CGH 299736100 ENCODE Processing Pipeline dc4f9613aa0ff67442271bd4f2abba35 https://www.encodeproject.org/files/ENCFF041UWI/@@download/ENCFF041UWI.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF060DJH bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF643CGH 727770575 ENCODE Processing Pipeline 537520010fcfbe6325002cd0547e9728 https://www.encodeproject.org/files/ENCFF060DJH/@@download/ENCFF060DJH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF100HXA bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF643CGH 897506757 ENCODE Processing Pipeline 4ab39e48e27735e9497de459d8f3740a https://www.encodeproject.org/files/ENCFF100HXA/@@download/ENCFF100HXA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF171PUL bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF643CGH 1134001695 ENCODE Processing Pipeline e9020c69f19aea019d57edf49563e38a https://www.encodeproject.org/files/ENCFF171PUL/@@download/ENCFF171PUL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF072QPI bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF643CGH 1308923315 ENCODE Processing Pipeline b0ce8d287c933261c8baf6c8e24d93bb https://www.encodeproject.org/files/ENCFF072QPI/@@download/ENCFF072QPI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF902JQQ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF643CGH 854486716 ENCODE Processing Pipeline 6cbb5091ed4b1f3dab3ad5df860d5f99 https://www.encodeproject.org/files/ENCFF902JQQ/@@download/ENCFF902JQQ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF528OSH bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF643CGH 814099956 ENCODE Processing Pipeline 7e288a06e29b725d3d219829a007cf50 https://www.encodeproject.org/files/ENCFF528OSH/@@download/ENCFF528OSH.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF363SJZ bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VXQ, ENCFF643CGH 691766560 ENCODE Processing Pipeline 6dec61e658b48a1fd09fbd4a8adb88c7 https://www.encodeproject.org/files/ENCFF363SJZ/@@download/ENCFF363SJZ.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF116MDP bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VXS, ENCFF643CGH 662602065 ENCODE Processing Pipeline c40a2b8febc44e5bef60b235885f259c https://www.encodeproject.org/files/ENCFF116MDP/@@download/ENCFF116MDP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF346SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF643CGH, ENCFF659AFH 870473063 ENCODE Processing Pipeline 41e9f739b18ca49736b7443a57fb5fb5 https://www.encodeproject.org/files/ENCFF346SPJ/@@download/ENCFF346SPJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF386SPJ bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF643CGH, ENCFF944THM 1463075215 ENCODE Processing Pipeline 0cd3fe133f7e2556bc6510b83a90491c https://www.encodeproject.org/files/ENCFF386SPJ/@@download/ENCFF386SPJ.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF589FCD bam alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF643CGH 597593761 ENCODE Processing Pipeline c1ee955f5c836cbbe875d40c002d38d6 https://www.encodeproject.org/files/ENCFF589FCD/@@download/ENCFF589FCD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF903TVU bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF643CGH, ENCFF848FDX 3157960667 ENCODE Processing Pipeline 1052f103eb7d1c7dbc5964e56f6ce758 https://www.encodeproject.org/files/ENCFF903TVU/@@download/ENCFF903TVU.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF112SEL bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF643CGH, ENCFF683NIW, ENCFF926JSG 4401758041 ENCODE Processing Pipeline 27920ec7ab9bf52e5e710ead583b7984 https://www.encodeproject.org/files/ENCFF112SEL/@@download/ENCFF112SEL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF475BJQ bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF643CGH 284873727 ENCODE Processing Pipeline 0abdbfc03878a1151752df5b4390bec4 https://www.encodeproject.org/files/ENCFF475BJQ/@@download/ENCFF475BJQ.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF929JPT bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF643CGH 337545118 ENCODE Processing Pipeline ccb509b4c245411e0e83a3882e99af3f https://www.encodeproject.org/files/ENCFF929JPT/@@download/ENCFF929JPT.bam GRCh38 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF022RML bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF643CGH 206418052 ENCODE Processing Pipeline 36cde1749a1c0cdff774d270c8b8c89d https://www.encodeproject.org/files/ENCFF022RML/@@download/ENCFF022RML.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF727LFV bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF643CGH 497226916 ENCODE Processing Pipeline 903aa9ce2ae4af77e3b132ef5fbe72ac https://www.encodeproject.org/files/ENCFF727LFV/@@download/ENCFF727LFV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF939YGI bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF643CGH 1258020146 ENCODE Processing Pipeline c8c9386d27b941ca2efe2ed04db2d2df https://www.encodeproject.org/files/ENCFF939YGI/@@download/ENCFF939YGI.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF358OUL bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF643CGH 661482534 ENCODE Processing Pipeline 62c851027b443f091c1bed857a17198d https://www.encodeproject.org/files/ENCFF358OUL/@@download/ENCFF358OUL.bam GRCh38 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF223YMP bam alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF643CGH 3662371255 ENCODE Processing Pipeline 37cab36a82bf96d39226b8405f7d412c https://www.encodeproject.org/files/ENCFF223YMP/@@download/ENCFF223YMP.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF198YBT bam alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF643CGH 5376078401 ENCODE Processing Pipeline 86d4a250141e1bfb2d3d6372bc644a02 https://www.encodeproject.org/files/ENCFF198YBT/@@download/ENCFF198YBT.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF693ANZ bam alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF643CGH, ENCFF725BGJ 5810741949 ENCODE Processing Pipeline 8d3b49801e72d3b698a502871b16cd78 https://www.encodeproject.org/files/ENCFF693ANZ/@@download/ENCFF693ANZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF492NUF bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF643CGH 509906295 ENCODE Processing Pipeline 7655c43c866a6fe655cb897434d78fca https://www.encodeproject.org/files/ENCFF492NUF/@@download/ENCFF492NUF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF561ILM bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF643CGH 425489056 ENCODE Processing Pipeline 45ef8500ed3bd5cfd374344dd5a33457 https://www.encodeproject.org/files/ENCFF561ILM/@@download/ENCFF561ILM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF665LFS bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF643CGH 340871674 ENCODE Processing Pipeline 00a00871a40ae58f810a0f159a33f373 https://www.encodeproject.org/files/ENCFF665LFS/@@download/ENCFF665LFS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF820CYE bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF643CGH 144082851 ENCODE Processing Pipeline 27791b422ea3f0d0ed4501968618ac07 https://www.encodeproject.org/files/ENCFF820CYE/@@download/ENCFF820CYE.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF031RFG bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF643CGH 5003937494 ENCODE Processing Pipeline 3b920fabf853e4ad4634bafb1f66c935 https://www.encodeproject.org/files/ENCFF031RFG/@@download/ENCFF031RFG.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF848TYC bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF643CGH, ENCFF676BSD 5962924931 ENCODE Processing Pipeline 6b1da8107abde20875aa62a373de6c46 https://www.encodeproject.org/files/ENCFF848TYC/@@download/ENCFF848TYC.bam GRCh38 released missing genetic modification characterization missing control alignments ENCFF651OUX bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF643CGH 485978758 ENCODE Processing Pipeline 9fad95c0c1bbd990b106e06ad51ff33a https://www.encodeproject.org/files/ENCFF651OUX/@@download/ENCFF651OUX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF365KGA bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF643CGH 643441791 ENCODE Processing Pipeline 4988025ba6653332b5bc4da3f599a12b https://www.encodeproject.org/files/ENCFF365KGA/@@download/ENCFF365KGA.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF014DRH bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF643CGH 261569545 ENCODE Processing Pipeline f9a0837fb102c412b4b28255903b43b5 https://www.encodeproject.org/files/ENCFF014DRH/@@download/ENCFF014DRH.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF553WMU bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF643CGH 367153153 ENCODE Processing Pipeline 159903c9e945ff33958119dae7c7c826 https://www.encodeproject.org/files/ENCFF553WMU/@@download/ENCFF553WMU.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF955QCB bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF643CGH 433619344 ENCODE Processing Pipeline feba9b36c7979a77b36f5ac9b91a9fe9 https://www.encodeproject.org/files/ENCFF955QCB/@@download/ENCFF955QCB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF473LHB bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF643CGH 816561039 ENCODE Processing Pipeline 950c2a3f77ab82ce278baad18174718e https://www.encodeproject.org/files/ENCFF473LHB/@@download/ENCFF473LHB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF431WUY bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF643CGH 580121956 ENCODE Processing Pipeline 28a097de1f25672e7180ecce3438793e https://www.encodeproject.org/files/ENCFF431WUY/@@download/ENCFF431WUY.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF010FWV bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF643CGH 636974258 ENCODE Processing Pipeline 1a08565befc3f5d2e82ce20bffebd0ab https://www.encodeproject.org/files/ENCFF010FWV/@@download/ENCFF010FWV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF481HLX bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF643CGH 3031177188 ENCODE Processing Pipeline 91340643ce88740c8a614bde103641ef https://www.encodeproject.org/files/ENCFF481HLX/@@download/ENCFF481HLX.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF579UZO bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF643CGH 1182125461 ENCODE Processing Pipeline 153d6fa04735a063dba3613302e91b07 https://www.encodeproject.org/files/ENCFF579UZO/@@download/ENCFF579UZO.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF775ONC bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF643CGH 638305951 ENCODE Processing Pipeline 165fadedc7dd463af7ffc2d580d17b2c https://www.encodeproject.org/files/ENCFF775ONC/@@download/ENCFF775ONC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF219PMT bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF643CGH 814050384 ENCODE Processing Pipeline c71b41af781e9e6e216ec821d3d4ef82 https://www.encodeproject.org/files/ENCFF219PMT/@@download/ENCFF219PMT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF537KZX bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF643CGH 372900616 ENCODE Processing Pipeline 798928967ef730fb5d2623a3206f85a8 https://www.encodeproject.org/files/ENCFF537KZX/@@download/ENCFF537KZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF150BQN bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF643CGH 504867080 ENCODE Processing Pipeline fc08b930a42e708edbb4aab8a300b4b5 https://www.encodeproject.org/files/ENCFF150BQN/@@download/ENCFF150BQN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF178VEA bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF643CGH 481515882 ENCODE Processing Pipeline 8c11b01b11fba5b2e00ad9553b0d30ad https://www.encodeproject.org/files/ENCFF178VEA/@@download/ENCFF178VEA.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF797FEY bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF643CGH 971792096 ENCODE Processing Pipeline 8a018a2c20ebe932ee90cc5faae07ed3 https://www.encodeproject.org/files/ENCFF797FEY/@@download/ENCFF797FEY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF240MQI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF643CGH 644643687 ENCODE Processing Pipeline 1c20ff0def323dcbaf162273da622bc1 https://www.encodeproject.org/files/ENCFF240MQI/@@download/ENCFF240MQI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF888PAI bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF643CGH 766004482 ENCODE Processing Pipeline 9a381fee1a0f451d1c09fcdd2391b548 https://www.encodeproject.org/files/ENCFF888PAI/@@download/ENCFF888PAI.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF305JRI bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF643CGH 193598114 ENCODE Processing Pipeline bc6b06a79ecc0c490c443577c6b5a3e9 https://www.encodeproject.org/files/ENCFF305JRI/@@download/ENCFF305JRI.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF578NKF bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF643CGH 238609627 ENCODE Processing Pipeline f50949a2d3611c1fd23cad361869b7cf https://www.encodeproject.org/files/ENCFF578NKF/@@download/ENCFF578NKF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF953ICQ bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF643CGH, ENCFF948AGS 354759261 ENCODE Processing Pipeline 199a4137880e37eeb672500a3d57a82b https://www.encodeproject.org/files/ENCFF953ICQ/@@download/ENCFF953ICQ.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF153MPX bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF171KWD, ENCFF643CGH 351723148 ENCODE Processing Pipeline 9e039ecd58d9b5c171981713887e5895 https://www.encodeproject.org/files/ENCFF153MPX/@@download/ENCFF153MPX.bam GRCh38 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF602UAC bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF643CGH 752863847 ENCODE Processing Pipeline 7180fe9b40f918381adcd6c4357de77a https://www.encodeproject.org/files/ENCFF602UAC/@@download/ENCFF602UAC.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF650RFL bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF643CGH 703716633 ENCODE Processing Pipeline 37c8976e8feca2b946c2c8226a3a7b15 https://www.encodeproject.org/files/ENCFF650RFL/@@download/ENCFF650RFL.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF692BVS bam alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643CGH, ENCFF732EAG, ENCFF807YBJ 2949735670 ENCODE Processing Pipeline a45b1674e5465b008d069d709c86796a https://www.encodeproject.org/files/ENCFF692BVS/@@download/ENCFF692BVS.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF439NNR bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF643CGH 282690289 ENCODE Processing Pipeline 7f2e39549c861be276545cef4ef95c4c https://www.encodeproject.org/files/ENCFF439NNR/@@download/ENCFF439NNR.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF483RLD bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF643CGH 305866783 ENCODE Processing Pipeline 7a072ef30683126579c37a910624ef3f https://www.encodeproject.org/files/ENCFF483RLD/@@download/ENCFF483RLD.bam GRCh38 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF814CHV bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF643CGH 311839170 ENCODE Processing Pipeline f52e3384654aee76a5b31da2e8307bb6 https://www.encodeproject.org/files/ENCFF814CHV/@@download/ENCFF814CHV.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF050LIC bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF643CGH 258573795 ENCODE Processing Pipeline 3949567f5eb6ddf7e106d2fa95025932 https://www.encodeproject.org/files/ENCFF050LIC/@@download/ENCFF050LIC.bam GRCh38 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF192KRY bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF643CGH 119171175 ENCODE Processing Pipeline e8287f3f0b72c37629bd6f0f3357eeb5 https://www.encodeproject.org/files/ENCFF192KRY/@@download/ENCFF192KRY.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF726LJT bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF643CGH 118996109 ENCODE Processing Pipeline 93a2e1448149a2ce202af35867564900 https://www.encodeproject.org/files/ENCFF726LJT/@@download/ENCFF726LJT.bam GRCh38 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF797FVU bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF643CGH, ENCFF705WBN 1172487039 ENCODE Processing Pipeline dcf2b8253ee40bc7c9ae000632dae3b8 https://www.encodeproject.org/files/ENCFF797FVU/@@download/ENCFF797FVU.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF202BLM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF643CGH 1077476746 ENCODE Processing Pipeline af75b092ea482b47232baa520cdee9fd https://www.encodeproject.org/files/ENCFF202BLM/@@download/ENCFF202BLM.bam GRCh38 released moderate library complexity severe bottlenecking ENCFF842ISP bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF643CGH 913396409 ENCODE Processing Pipeline 820a5dd379440e4198aa83049231698f https://www.encodeproject.org/files/ENCFF842ISP/@@download/ENCFF842ISP.bam GRCh38 released low read length biological replicates with identical biosample ENCFF089EEX bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF643CGH 1093076456 ENCODE Processing Pipeline 5509e07e0c0b4075c9a423a2fc7ee6a4 https://www.encodeproject.org/files/ENCFF089EEX/@@download/ENCFF089EEX.bam GRCh38 released low read length biological replicates with identical biosample ENCFF771COC bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF643CGH 251330489 ENCODE Processing Pipeline d33026d7e2e43e62888470abf09ef743 https://www.encodeproject.org/files/ENCFF771COC/@@download/ENCFF771COC.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF863RJF bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF643CGH 266438889 ENCODE Processing Pipeline e1b44ea59fc9f678375574ec44237cc3 https://www.encodeproject.org/files/ENCFF863RJF/@@download/ENCFF863RJF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF822LTQ bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF643CGH 771932619 ENCODE Processing Pipeline 08921cc60642df9e2f3592e374feb893 https://www.encodeproject.org/files/ENCFF822LTQ/@@download/ENCFF822LTQ.bam GRCh38 released low read length, low read depth ENCFF274JRZ bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF643CGH 794353001 ENCODE Processing Pipeline 5895db5da1db6d10a956fa76fa43e6c1 https://www.encodeproject.org/files/ENCFF274JRZ/@@download/ENCFF274JRZ.bam GRCh38 released low read length, low read depth ENCFF663MFK bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF643CGH 528175062 ENCODE Processing Pipeline 77b8bd3881ed7867e8990fc48dd923c4 https://www.encodeproject.org/files/ENCFF663MFK/@@download/ENCFF663MFK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667IDX bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF643CGH 979486542 ENCODE Processing Pipeline f8b0c94406051ed74ee01362c158d54b https://www.encodeproject.org/files/ENCFF667IDX/@@download/ENCFF667IDX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF339BJP bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF643CGH 431688113 ENCODE Processing Pipeline 8c3522f018db0fb6e60d6cdf0c37fe83 https://www.encodeproject.org/files/ENCFF339BJP/@@download/ENCFF339BJP.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF470IST bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF643CGH 230399007 ENCODE Processing Pipeline cd320a6feca82a0cf28344bcfd729961 https://www.encodeproject.org/files/ENCFF470IST/@@download/ENCFF470IST.bam GRCh38 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF004JMG bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAK, ENCFF643CGH 810579234 ENCODE Processing Pipeline 8faf9ef5cb6dfb45f07d5087955b5367 https://www.encodeproject.org/files/ENCFF004JMG/@@download/ENCFF004JMG.bam GRCh38 released low read length, borderline replicate concordance ENCFF003TGD bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAH, ENCFF643CGH 810194332 ENCODE Processing Pipeline d2c20005bbe5c6ad662b288474648b99 https://www.encodeproject.org/files/ENCFF003TGD/@@download/ENCFF003TGD.bam GRCh38 released low read length, borderline replicate concordance ENCFF438WBW bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF643CGH 1847116122 ENCODE Processing Pipeline 5c39879adc866f23496d0e6edd677c95 https://www.encodeproject.org/files/ENCFF438WBW/@@download/ENCFF438WBW.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF221NHN bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF643CGH 1686042558 ENCODE Processing Pipeline 4a885d7cfebc1bb4caa151350d8dc881 https://www.encodeproject.org/files/ENCFF221NHN/@@download/ENCFF221NHN.bam GRCh38 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF786STT bam alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF643CGH, ENCFF768WER 3312120280 ENCODE Processing Pipeline ba5189277f292ce7aa6595e26b47f7b6 https://www.encodeproject.org/files/ENCFF786STT/@@download/ENCFF786STT.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF963DAM bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF643CGH 803109185 ENCODE Processing Pipeline bffb5f2411f1bedd9441ad9aaa01be81 https://www.encodeproject.org/files/ENCFF963DAM/@@download/ENCFF963DAM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF460PKZ bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF643CGH 861761993 ENCODE Processing Pipeline 007a475782d2510246a2e53c0a7c0e1b https://www.encodeproject.org/files/ENCFF460PKZ/@@download/ENCFF460PKZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF787NSD bam alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF643CGH 4938912931 ENCODE Processing Pipeline 99158f63c5ab73c6b81db4cbcda48ab5 https://www.encodeproject.org/files/ENCFF787NSD/@@download/ENCFF787NSD.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF749RRI bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF643CGH 261318556 ENCODE Processing Pipeline 5c0e749088a06d123c8db295b0afab9f https://www.encodeproject.org/files/ENCFF749RRI/@@download/ENCFF749RRI.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF784MLU bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF643CGH 302108506 ENCODE Processing Pipeline e919991e67b6a51429759c9bf96b9636 https://www.encodeproject.org/files/ENCFF784MLU/@@download/ENCFF784MLU.bam GRCh38 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF696GNV bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF643CGH 486295506 ENCODE Processing Pipeline d206b3519215c0a17864ec520dffb719 https://www.encodeproject.org/files/ENCFF696GNV/@@download/ENCFF696GNV.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF312WAT bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF643CGH 967402004 ENCODE Processing Pipeline e4dd2b93c6736a3531452e41212be774 https://www.encodeproject.org/files/ENCFF312WAT/@@download/ENCFF312WAT.bam GRCh38 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF521KDX bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF643CGH 535567390 ENCODE Processing Pipeline 61047e90a3f93a875c43d21e51e3027c https://www.encodeproject.org/files/ENCFF521KDX/@@download/ENCFF521KDX.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF318WWT bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF643CGH 970203983 ENCODE Processing Pipeline 0e5f5b6cca88a0f33230df9b1f0f4912 https://www.encodeproject.org/files/ENCFF318WWT/@@download/ENCFF318WWT.bam GRCh38 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF957DAV bam alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF643CGH, ENCFF901YTM 4887938526 ENCODE Processing Pipeline aecf59e576cbea0645c008fe55a7a348 https://www.encodeproject.org/files/ENCFF957DAV/@@download/ENCFF957DAV.bam GRCh38 released antibody characterized with exemption ENCFF220MDN bam alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF643CGH, ENCFF813TWG 3721892863 ENCODE Processing Pipeline cbca7e0306d2ec031e3b1c7216869d75 https://www.encodeproject.org/files/ENCFF220MDN/@@download/ENCFF220MDN.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF280TYK bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF643CGH 821161925 ENCODE Processing Pipeline db7398d1761e5f348e1c7dda4ad1718f https://www.encodeproject.org/files/ENCFF280TYK/@@download/ENCFF280TYK.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835YDD bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF643CGH 810777192 ENCODE Processing Pipeline daf6beea620f0668bff79c9b23693d33 https://www.encodeproject.org/files/ENCFF835YDD/@@download/ENCFF835YDD.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF790FNF bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF643CGH 1122993833 ENCODE Processing Pipeline 880064634930df4e6e5799ee789c241a https://www.encodeproject.org/files/ENCFF790FNF/@@download/ENCFF790FNF.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF516UTV bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF643CGH 1332696728 ENCODE Processing Pipeline 0e31d980062fc4145af69385d6201308 https://www.encodeproject.org/files/ENCFF516UTV/@@download/ENCFF516UTV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF621CEP bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF643CGH 495799350 ENCODE Processing Pipeline 05ea0ec6a0f159cfe5c10565a9cd9e1d https://www.encodeproject.org/files/ENCFF621CEP/@@download/ENCFF621CEP.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF735FDV bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF643CGH 1637423189 ENCODE Processing Pipeline ac2ee70b74f4766f57abf8945e32518e https://www.encodeproject.org/files/ENCFF735FDV/@@download/ENCFF735FDV.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF737VAT bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF643CGH 255029592 ENCODE Processing Pipeline 85e8d4a24f36fd3a146fd9ef780021ec https://www.encodeproject.org/files/ENCFF737VAT/@@download/ENCFF737VAT.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF074OYP bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF643CGH 326611157 ENCODE Processing Pipeline 9803b0e54dd2d4caf6e288471a4fb4ab https://www.encodeproject.org/files/ENCFF074OYP/@@download/ENCFF074OYP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF997UGV bam alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF643CGH, ENCFF950IWA 3415674245 ENCODE Processing Pipeline 35c9165d6c53387b55746956822b78e7 https://www.encodeproject.org/files/ENCFF997UGV/@@download/ENCFF997UGV.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF924CYX bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF643CGH 383729217 ENCODE Processing Pipeline f6e958af6300874e8abd8a696b6601b2 https://www.encodeproject.org/files/ENCFF924CYX/@@download/ENCFF924CYX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF014UUB bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF643CGH 764029946 ENCODE Processing Pipeline 40819714f4f7c7a674ca20ad47665494 https://www.encodeproject.org/files/ENCFF014UUB/@@download/ENCFF014UUB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF753ECA bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF643CGH 768607465 ENCODE Processing Pipeline c0dc7255bd96464d7c400435e05ea65e https://www.encodeproject.org/files/ENCFF753ECA/@@download/ENCFF753ECA.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF238XQT bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF643CGH 867667549 ENCODE Processing Pipeline a728d169e33738324980eaa8b71f3a19 https://www.encodeproject.org/files/ENCFF238XQT/@@download/ENCFF238XQT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF818YBT bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XER, ENCFF643CGH 509735140 ENCODE Processing Pipeline ef17b141a24747810d8c97e83f048da8 https://www.encodeproject.org/files/ENCFF818YBT/@@download/ENCFF818YBT.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF929BHR bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XFC, ENCFF643CGH 540962628 ENCODE Processing Pipeline 0c76978b12243463dfb024cd030ade78 https://www.encodeproject.org/files/ENCFF929BHR/@@download/ENCFF929BHR.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF132JEX bam alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF643CGH 3085690143 ENCODE Processing Pipeline 0000c75af88cb6d94d9807adea98a3bf https://www.encodeproject.org/files/ENCFF132JEX/@@download/ENCFF132JEX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF018VMV bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF643CGH 259571090 ENCODE Processing Pipeline 9409fbcb57689a967ffe3d460893a6a3 https://www.encodeproject.org/files/ENCFF018VMV/@@download/ENCFF018VMV.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF594YMC bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF643CGH 495193914 ENCODE Processing Pipeline de37ec255c4b720bb15c74065dd4b4d4 https://www.encodeproject.org/files/ENCFF594YMC/@@download/ENCFF594YMC.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF431RRC bam alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF643CGH, ENCFF669LRI 5116491162 ENCODE Processing Pipeline 28a25074638ce2ff924011c91239acdd https://www.encodeproject.org/files/ENCFF431RRC/@@download/ENCFF431RRC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF591IRP bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF643CGH 423654259 ENCODE Processing Pipeline 25c066e62c0d7251dfabb4b66b526c59 https://www.encodeproject.org/files/ENCFF591IRP/@@download/ENCFF591IRP.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF708ISS bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF643CGH 477652333 ENCODE Processing Pipeline 1c572e9b3d6d83b4d2074af60872f820 https://www.encodeproject.org/files/ENCFF708ISS/@@download/ENCFF708ISS.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF575GRT bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF643CGH 566838088 ENCODE Processing Pipeline 8265b1603a327623600cae1fdc4919df https://www.encodeproject.org/files/ENCFF575GRT/@@download/ENCFF575GRT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF177XDM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF643CGH 743430394 ENCODE Processing Pipeline 49149538d294da437dad4845ceb2fd06 https://www.encodeproject.org/files/ENCFF177XDM/@@download/ENCFF177XDM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF962NMX bam alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF643CGH 2954547016 ENCODE Processing Pipeline 25fd824575dc2410f76ad80a8e9c7a4e https://www.encodeproject.org/files/ENCFF962NMX/@@download/ENCFF962NMX.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF823GCX bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF643CGH 310697982 ENCODE Processing Pipeline 4f92bcecf3b99eb51ab9adf3ce3e3c1a https://www.encodeproject.org/files/ENCFF823GCX/@@download/ENCFF823GCX.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF827SLL bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF643CGH 457476245 ENCODE Processing Pipeline 2e9b3adafcbbb1f6494e6a76dfd99dfc https://www.encodeproject.org/files/ENCFF827SLL/@@download/ENCFF827SLL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF423BGB bam alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF643CGH, ENCFF879QBW 2289051069 ENCODE Processing Pipeline 4a91dca3d708a4897d74f370f0bd5fcb https://www.encodeproject.org/files/ENCFF423BGB/@@download/ENCFF423BGB.bam GRCh38 released low read length experiment not submitted to GEO ENCFF189GFZ bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF643CGH 379400371 ENCODE Processing Pipeline 2787f6be85345c16c2d45c639ccdf836 https://www.encodeproject.org/files/ENCFF189GFZ/@@download/ENCFF189GFZ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF132NVE bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF643CGH 253457563 ENCODE Processing Pipeline 9de1e0419acb4bffd5d8848eb7b9fcb6 https://www.encodeproject.org/files/ENCFF132NVE/@@download/ENCFF132NVE.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF044TAL bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF643CGH 169814671 ENCODE Processing Pipeline c9b5f63070b8e5e1254c02bfb40d97d2 https://www.encodeproject.org/files/ENCFF044TAL/@@download/ENCFF044TAL.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF651HPM bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF643CGH 270423140 ENCODE Processing Pipeline 97698697152df239505bc2c050dffd49 https://www.encodeproject.org/files/ENCFF651HPM/@@download/ENCFF651HPM.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF468ENY bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF643CGH 460530578 ENCODE Processing Pipeline aa33520c81c2561895e94a27cf9ed2b1 https://www.encodeproject.org/files/ENCFF468ENY/@@download/ENCFF468ENY.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF221YIR bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF643CGH 1871508687 ENCODE Processing Pipeline a479febde6ed2d31f346afd93e83ccb1 https://www.encodeproject.org/files/ENCFF221YIR/@@download/ENCFF221YIR.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF794ABP bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF643CGH 156295938 ENCODE Processing Pipeline 2fbab4694606a2a63232600c8c48b061 https://www.encodeproject.org/files/ENCFF794ABP/@@download/ENCFF794ABP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF587WWS bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF643CGH 390081753 ENCODE Processing Pipeline bd69f335271c3f114e0efc2635c48416 https://www.encodeproject.org/files/ENCFF587WWS/@@download/ENCFF587WWS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF244MAQ bam alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF643CGH 1092310548 ENCODE Processing Pipeline b4c13f4a912db6a00253f12ddbea3549 https://www.encodeproject.org/files/ENCFF244MAQ/@@download/ENCFF244MAQ.bam GRCh38 released control low read depth, low read length, inconsistent platforms ENCFF592HXS bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WYW, ENCFF643CGH 1358555541 ENCODE Processing Pipeline 3f582636110318714b0f698500cdb17c https://www.encodeproject.org/files/ENCFF592HXS/@@download/ENCFF592HXS.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF858WNV bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WYV, ENCFF643CGH 1656514279 ENCODE Processing Pipeline bfb743b961419fa09f1452c01b8c24db https://www.encodeproject.org/files/ENCFF858WNV/@@download/ENCFF858WNV.bam GRCh38 released control low read depth, low read length, borderline replicate concordance ENCFF719OIE bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF643CGH 1399685901 ENCODE Processing Pipeline f654126fbb4401cd532b42df3bbeb2bd https://www.encodeproject.org/files/ENCFF719OIE/@@download/ENCFF719OIE.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF852HSQ bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF643CGH 1209743708 ENCODE Processing Pipeline 03ade9ed47ecd0c6068d1bcfa437c037 https://www.encodeproject.org/files/ENCFF852HSQ/@@download/ENCFF852HSQ.bam GRCh38 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF277PVA bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF643CGH, ENCFF794IGW 929951084 ENCODE Processing Pipeline 32d64cbc202ea2ce0f714c365c45f20d https://www.encodeproject.org/files/ENCFF277PVA/@@download/ENCFF277PVA.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF031TYH bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF643CGH 914337388 ENCODE Processing Pipeline 71510dbbfe95dd9d67402fb7382ca9d3 https://www.encodeproject.org/files/ENCFF031TYH/@@download/ENCFF031TYH.bam GRCh38 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF331TRC bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF643CGH 189715385 ENCODE Processing Pipeline 7a7b384e5a57335211f6b39bd28a8b8b https://www.encodeproject.org/files/ENCFF331TRC/@@download/ENCFF331TRC.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF535PLW bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF643CGH 767172471 ENCODE Processing Pipeline 298e40432ceeb43681e43e6c31aa40d2 https://www.encodeproject.org/files/ENCFF535PLW/@@download/ENCFF535PLW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF365CNT bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF643CGH, ENCFF865MQU 5856329526 ENCODE Processing Pipeline 9104d386478aa291c6b6212465953ac1 https://www.encodeproject.org/files/ENCFF365CNT/@@download/ENCFF365CNT.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF683TLX bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF643CGH, ENCFF802MME 5352693976 ENCODE Processing Pipeline af8237822d5023b64b52e7ac0705a62e https://www.encodeproject.org/files/ENCFF683TLX/@@download/ENCFF683TLX.bam GRCh38 released mild to moderate bottlenecking NTR biosample ENCFF065YOX bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF643CGH 604975859 ENCODE Processing Pipeline d8b3391b9c63ae3cc407e1111ed059ae https://www.encodeproject.org/files/ENCFF065YOX/@@download/ENCFF065YOX.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF803YAB bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF643CGH 473315124 ENCODE Processing Pipeline 768189dbe9860c0b431ed3c72654b6c4 https://www.encodeproject.org/files/ENCFF803YAB/@@download/ENCFF803YAB.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF671MAH bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF643CGH 873636483 ENCODE Processing Pipeline 1d99020e5929fd97538ab6ffc6059373 https://www.encodeproject.org/files/ENCFF671MAH/@@download/ENCFF671MAH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF965XCZ bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF643CGH 1353217130 ENCODE Processing Pipeline aa857c2e0ab998eab655c2acf978c182 https://www.encodeproject.org/files/ENCFF965XCZ/@@download/ENCFF965XCZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF999KUG bam alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF073GTF, ENCFF554PAM, ENCFF643CGH 4980553915 ENCODE Processing Pipeline 7a35793fdf8e6f1bd91135a29d0d0f50 https://www.encodeproject.org/files/ENCFF999KUG/@@download/ENCFF999KUG.bam GRCh38 released control low read depth, antibody characterized with exemption ENCFF055QMP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF643CGH 650158600 ENCODE Processing Pipeline ff66586806dd0483b810b46aeebffc91 https://www.encodeproject.org/files/ENCFF055QMP/@@download/ENCFF055QMP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF230KKA bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF643CGH 630534023 ENCODE Processing Pipeline c26f221e59a03016e91563a14a503e3b https://www.encodeproject.org/files/ENCFF230KKA/@@download/ENCFF230KKA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF990APU bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF643CGH 356828772 ENCODE Processing Pipeline b11a3971c7c45b23fccb7992f1ee7ed1 https://www.encodeproject.org/files/ENCFF990APU/@@download/ENCFF990APU.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF154NVP bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF643CGH 299715560 ENCODE Processing Pipeline 10dbf068d4a23a113605510570f4e2ee https://www.encodeproject.org/files/ENCFF154NVP/@@download/ENCFF154NVP.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF393ZAK bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF643CGH 406772395 ENCODE Processing Pipeline 3afbfb2ad696557f226e46cd94cbd0db https://www.encodeproject.org/files/ENCFF393ZAK/@@download/ENCFF393ZAK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF680COV bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF643CGH 415460988 ENCODE Processing Pipeline 4d66132fa95cf021a9b565ddfda18500 https://www.encodeproject.org/files/ENCFF680COV/@@download/ENCFF680COV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF223EHQ bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF643CGH 992657495 ENCODE Processing Pipeline 6e108b37e56622e9aea2be599b5d3933 https://www.encodeproject.org/files/ENCFF223EHQ/@@download/ENCFF223EHQ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF565TWZ bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF643CGH 821544564 ENCODE Processing Pipeline e6ccb1644900e7b90cc24959b30979b8 https://www.encodeproject.org/files/ENCFF565TWZ/@@download/ENCFF565TWZ.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF874WSE bam alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF643CGH, ENCFF818QPF 2487006065 ENCODE Processing Pipeline 34f6e24c00d39662ff53481a873a2a0c https://www.encodeproject.org/files/ENCFF874WSE/@@download/ENCFF874WSE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF170EHY bam alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF643CGH 3951902612 ENCODE Processing Pipeline 7e8fd641f2f7eec5b66e9511cb360a7f https://www.encodeproject.org/files/ENCFF170EHY/@@download/ENCFF170EHY.bam GRCh38 released antibody characterized with exemption ENCFF068ETE bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF643CGH 465466126 ENCODE Processing Pipeline f3b47a510098f6330353abedce070d25 https://www.encodeproject.org/files/ENCFF068ETE/@@download/ENCFF068ETE.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF418UZJ bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF643CGH 893846680 ENCODE Processing Pipeline 705ba7844067b038920c61b69d1ea9a7 https://www.encodeproject.org/files/ENCFF418UZJ/@@download/ENCFF418UZJ.bam GRCh38 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF904CPI bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF643CGH 395471962 ENCODE Processing Pipeline 12382461a588965b5a5e4ade25dc4f13 https://www.encodeproject.org/files/ENCFF904CPI/@@download/ENCFF904CPI.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF397ZVS bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1142970133 ENCODE Processing Pipeline 01b13d86d1af15d2174a91611388f0e5 https://www.encodeproject.org/files/ENCFF397ZVS/@@download/ENCFF397ZVS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF206YYH bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000QJH, ENCFF261BMQ, ENCFF643CGH 789991107 ENCODE Processing Pipeline 1a3c8ed2582f34e8cc3ee156cdb5d5e3 https://www.encodeproject.org/files/ENCFF206YYH/@@download/ENCFF206YYH.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF793KZB bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000QJK, ENCFF643CGH 1142970137 ENCODE Processing Pipeline 87e80543df35e3da7289fe2be473c8f7 https://www.encodeproject.org/files/ENCFF793KZB/@@download/ENCFF793KZB.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF150RAO bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF643CGH 486175140 ENCODE Processing Pipeline 413ccc80101548410a74ac713e8ec893 https://www.encodeproject.org/files/ENCFF150RAO/@@download/ENCFF150RAO.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF142AQQ bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF643CGH 478148467 ENCODE Processing Pipeline 605c9b6fd41c5adf7c51d8d5915bb351 https://www.encodeproject.org/files/ENCFF142AQQ/@@download/ENCFF142AQQ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF430DOC bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF643CGH 555282710 ENCODE Processing Pipeline b44984c852327c539f73e0938c3cef6c https://www.encodeproject.org/files/ENCFF430DOC/@@download/ENCFF430DOC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF973FUN bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF643CGH 683076182 ENCODE Processing Pipeline 9b7d103898feaf44718230983300bb31 https://www.encodeproject.org/files/ENCFF973FUN/@@download/ENCFF973FUN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF482TVZ bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF643CGH 641977911 ENCODE Processing Pipeline 41073248ede011e50a10450553f919c0 https://www.encodeproject.org/files/ENCFF482TVZ/@@download/ENCFF482TVZ.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF724WMD bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF643CGH 799811309 ENCODE Processing Pipeline 219032d220792e632da5ce0438665587 https://www.encodeproject.org/files/ENCFF724WMD/@@download/ENCFF724WMD.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF701RBP bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF643CGH 796098153 ENCODE Processing Pipeline 4a5d2d65441da0b8ea6462e5417e3b2c https://www.encodeproject.org/files/ENCFF701RBP/@@download/ENCFF701RBP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF833ZLA bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF643CGH 875151189 ENCODE Processing Pipeline f9064428cabb0d986a554e3762cc0afe https://www.encodeproject.org/files/ENCFF833ZLA/@@download/ENCFF833ZLA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF157QUV bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELP, ENCFF002ELQ, ENCFF643CGH 3933136776 ENCODE Processing Pipeline cdaca042f6bef7556dd2c81e8d766e1f https://www.encodeproject.org/files/ENCFF157QUV/@@download/ENCFF157QUV.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF034UVX bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF643CGH, ENCFF723QGN 4947191843 ENCODE Processing Pipeline 18153f406899572020af0509e710ae5d https://www.encodeproject.org/files/ENCFF034UVX/@@download/ENCFF034UVX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF518PIS bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF643CGH 545582575 ENCODE Processing Pipeline 2d134746c5a0b5a77cf3d00ba3817c07 https://www.encodeproject.org/files/ENCFF518PIS/@@download/ENCFF518PIS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF126SXE bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF643CGH 629717843 ENCODE Processing Pipeline 8edbd9669942b239360d400c23a0cdc8 https://www.encodeproject.org/files/ENCFF126SXE/@@download/ENCFF126SXE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF786TLS bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF643CGH 668797753 ENCODE Processing Pipeline 59e9590f44893904b749834668d47077 https://www.encodeproject.org/files/ENCFF786TLS/@@download/ENCFF786TLS.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF659KOL bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF643CGH 889464201 ENCODE Processing Pipeline 4e847c49f7ee33eab8f5518ca61b5935 https://www.encodeproject.org/files/ENCFF659KOL/@@download/ENCFF659KOL.bam GRCh38 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF623PRW bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF643CGH 351293899 ENCODE Processing Pipeline 1d55a9b8d98e04ef13cb42b6f60cc6ba https://www.encodeproject.org/files/ENCFF623PRW/@@download/ENCFF623PRW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF977USM bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF643CGH 708863299 ENCODE Processing Pipeline ce96c2b56cf1625617077d10743c332a https://www.encodeproject.org/files/ENCFF977USM/@@download/ENCFF977USM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF846NVE bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF643CGH 894047043 ENCODE Processing Pipeline 952973c3ccfaf173178f18590d6adbc4 https://www.encodeproject.org/files/ENCFF846NVE/@@download/ENCFF846NVE.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF307JSM bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF643CGH 1259034298 ENCODE Processing Pipeline bc4305d2bf794879266442c1e059ed66 https://www.encodeproject.org/files/ENCFF307JSM/@@download/ENCFF307JSM.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF569DZM bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF643CGH 906913300 ENCODE Processing Pipeline 1b0bc1603abb69dce28020f3469b7a1e https://www.encodeproject.org/files/ENCFF569DZM/@@download/ENCFF569DZM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF140UJB bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF643CGH 744417770 ENCODE Processing Pipeline dfeffef05dd93ebb0251b324379048d7 https://www.encodeproject.org/files/ENCFF140UJB/@@download/ENCFF140UJB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF863KQI bam alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF643CGH, ENCFF703TVC, ENCFF826QIL 7780943440 ENCODE Processing Pipeline 4afbc8996cc68badb40d57bd8cf5f73a https://www.encodeproject.org/files/ENCFF863KQI/@@download/ENCFF863KQI.bam GRCh38 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF658RFI bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF643CGH 685459745 ENCODE Processing Pipeline df76a43fa63f2838506f4da9e1168cc5 https://www.encodeproject.org/files/ENCFF658RFI/@@download/ENCFF658RFI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF330EUW bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF643CGH 791828065 ENCODE Processing Pipeline 81a0004cff0edf9cc53145a7e7d2bef0 https://www.encodeproject.org/files/ENCFF330EUW/@@download/ENCFF330EUW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF195XAG bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF643CGH 476550551 ENCODE Processing Pipeline 0d21f2ba9f156a263f10d65cba86884a https://www.encodeproject.org/files/ENCFF195XAG/@@download/ENCFF195XAG.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF491ABD bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF720HOL 995039568 ENCODE Processing Pipeline 910994a10d3af1e7b11798d7b8153c80 https://www.encodeproject.org/files/ENCFF491ABD/@@download/ENCFF491ABD.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF121EED bam alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF643CGH 526039184 ENCODE Processing Pipeline 5341231f099c788ae16b32bc05b0f211 https://www.encodeproject.org/files/ENCFF121EED/@@download/ENCFF121EED.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF831LAD bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF643CGH 773669497 ENCODE Processing Pipeline d3a221130e38e58dbe51b13b54a05aa1 https://www.encodeproject.org/files/ENCFF831LAD/@@download/ENCFF831LAD.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF769PHM bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF643CGH 734788768 ENCODE Processing Pipeline a74717f1f4b4b572e0d78ffdffb4c996 https://www.encodeproject.org/files/ENCFF769PHM/@@download/ENCFF769PHM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF551FQW bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF643CGH 547282482 ENCODE Processing Pipeline 25a22afde7902f357c3842b9d0c743a5 https://www.encodeproject.org/files/ENCFF551FQW/@@download/ENCFF551FQW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF397FGK bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF643CGH 1953262346 ENCODE Processing Pipeline dcbcfc3224188cf5940609498bbeec5b https://www.encodeproject.org/files/ENCFF397FGK/@@download/ENCFF397FGK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF960AWO bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF643CGH 507934740 ENCODE Processing Pipeline bbc7e58205196c6be754e5cd6aac4bfe https://www.encodeproject.org/files/ENCFF960AWO/@@download/ENCFF960AWO.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF593TPG bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF643CGH 249287134 ENCODE Processing Pipeline 3f445a148ab4d4a92f4ed947fb00a52e https://www.encodeproject.org/files/ENCFF593TPG/@@download/ENCFF593TPG.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF843BZC bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF643CGH 243481682 ENCODE Processing Pipeline afa19b840c1efbc2d59c225aed772685 https://www.encodeproject.org/files/ENCFF843BZC/@@download/ENCFF843BZC.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF014GUN bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF643CGH 359043420 ENCODE Processing Pipeline a1b6d28ed5d73a42c7e1dd1d1825c803 https://www.encodeproject.org/files/ENCFF014GUN/@@download/ENCFF014GUN.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF360TJN bam alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF643CGH, ENCFF689PWV 1297979084 ENCODE Processing Pipeline a1119008c362aa863f551251f0e61611 https://www.encodeproject.org/files/ENCFF360TJN/@@download/ENCFF360TJN.bam GRCh38 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF645IYJ bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF643CGH 477698469 ENCODE Processing Pipeline 2ebaef637e9456f1b62b589b7511d4f2 https://www.encodeproject.org/files/ENCFF645IYJ/@@download/ENCFF645IYJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF021CMK bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF643CGH 1051595007 ENCODE Processing Pipeline 728a9eba80041bc0f4f02ce1f793d9a8 https://www.encodeproject.org/files/ENCFF021CMK/@@download/ENCFF021CMK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF856IKR bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF643CGH 509676389 ENCODE Processing Pipeline dedd4f718b253e39f21c40aab18597c3 https://www.encodeproject.org/files/ENCFF856IKR/@@download/ENCFF856IKR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF596VUL bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF643CGH 761767114 ENCODE Processing Pipeline 309a1bbf11184280d9af979b2ef7a691 https://www.encodeproject.org/files/ENCFF596VUL/@@download/ENCFF596VUL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF299JTX bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF643CGH 147195441 ENCODE Processing Pipeline 6d85787826dc31b20976da8daff4fe57 https://www.encodeproject.org/files/ENCFF299JTX/@@download/ENCFF299JTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF803JSH bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF643CGH 706534403 ENCODE Processing Pipeline e7a9cebf6b91fcf35df7bfdd60461401 https://www.encodeproject.org/files/ENCFF803JSH/@@download/ENCFF803JSH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF509IQQ bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF643CGH 1142085296 ENCODE Processing Pipeline 89c82da369cc74d9ef7377d82e03ca85 https://www.encodeproject.org/files/ENCFF509IQQ/@@download/ENCFF509IQQ.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF302WSZ bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF643CGH 1108389224 ENCODE Processing Pipeline cde2e988048879f8c5b79d0e4611bd9c https://www.encodeproject.org/files/ENCFF302WSZ/@@download/ENCFF302WSZ.bam GRCh38 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF266UHU bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF643CGH 239210535 ENCODE Processing Pipeline 1be18aed33cf94cf410aab92c80c7eca https://www.encodeproject.org/files/ENCFF266UHU/@@download/ENCFF266UHU.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF111YZR bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF643CGH 170854908 ENCODE Processing Pipeline 327dfc3feeaabea6b6e0d00bd97da4f2 https://www.encodeproject.org/files/ENCFF111YZR/@@download/ENCFF111YZR.bam GRCh38 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF232NLC bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF643CGH 962167867 ENCODE Processing Pipeline e2be5f067591e3709b987152c48f42a3 https://www.encodeproject.org/files/ENCFF232NLC/@@download/ENCFF232NLC.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF854DIW bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF643CGH 1028961736 ENCODE Processing Pipeline fed7377290a802ee79023d98f98c7a03 https://www.encodeproject.org/files/ENCFF854DIW/@@download/ENCFF854DIW.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF260NKL bam alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF643CGH, ENCFF794JCH 7682451959 ENCODE Processing Pipeline daed02cb159a94bc96aba5b3e117b32c https://www.encodeproject.org/files/ENCFF260NKL/@@download/ENCFF260NKL.bam GRCh38 released antibody characterized with exemption ENCFF602ZTX bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF643CGH 582124043 ENCODE Processing Pipeline bf4601f80a8fe117e2f29ca0ce276c13 https://www.encodeproject.org/files/ENCFF602ZTX/@@download/ENCFF602ZTX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF354ONG bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF643CGH 662059576 ENCODE Processing Pipeline e93fc9a2a099640343c253ec6d46b376 https://www.encodeproject.org/files/ENCFF354ONG/@@download/ENCFF354ONG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF863OQV bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF643CGH 407329144 ENCODE Processing Pipeline 168ae0733ca16365b54a4ac15cc06939 https://www.encodeproject.org/files/ENCFF863OQV/@@download/ENCFF863OQV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF894ODV bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF643CGH 573600985 ENCODE Processing Pipeline 3f85cc0a2e79089a5a13cf750fdca614 https://www.encodeproject.org/files/ENCFF894ODV/@@download/ENCFF894ODV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF577DPU bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF643CGH 546033690 ENCODE Processing Pipeline 04facd3de8236685c596efc33bbd73cd https://www.encodeproject.org/files/ENCFF577DPU/@@download/ENCFF577DPU.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF230UCT bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF643CGH 732260860 ENCODE Processing Pipeline 830b49318ad6467427b314db51f95f4d https://www.encodeproject.org/files/ENCFF230UCT/@@download/ENCFF230UCT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF568RDF bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF643CGH 737582256 ENCODE Processing Pipeline 16d0a4562e47ccb6ab824472397850d3 https://www.encodeproject.org/files/ENCFF568RDF/@@download/ENCFF568RDF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF665EXC bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF643CGH 1344635885 ENCODE Processing Pipeline 350873e0388962d6d58faf38176b66ae https://www.encodeproject.org/files/ENCFF665EXC/@@download/ENCFF665EXC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF276BPO bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF643CGH 675727737 ENCODE Processing Pipeline 39d19912dc15c6475f700aa376a940fb https://www.encodeproject.org/files/ENCFF276BPO/@@download/ENCFF276BPO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF412VEJ bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF643CGH 741057676 ENCODE Processing Pipeline 191275eaa6070ce0b13d9f21029be6da https://www.encodeproject.org/files/ENCFF412VEJ/@@download/ENCFF412VEJ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF573EJQ bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF643CGH 516431583 ENCODE Processing Pipeline 7cd2665650b2bb380cb1cc10b6395d85 https://www.encodeproject.org/files/ENCFF573EJQ/@@download/ENCFF573EJQ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF828OEW bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF643CGH 634407119 ENCODE Processing Pipeline c8aff76411bf652bf56f73155eea8046 https://www.encodeproject.org/files/ENCFF828OEW/@@download/ENCFF828OEW.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF589IXE bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF643CGH 804073613 ENCODE Processing Pipeline 94e2ee2f0c82e0fb34ee311a66ddd34d https://www.encodeproject.org/files/ENCFF589IXE/@@download/ENCFF589IXE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF097GYE bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF643CGH 855390389 ENCODE Processing Pipeline ae09d0023d46a108a029c381ff73c087 https://www.encodeproject.org/files/ENCFF097GYE/@@download/ENCFF097GYE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF033MWR bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF643CGH 588376100 ENCODE Processing Pipeline 39926f0c4994c800d73dfeb84596c112 https://www.encodeproject.org/files/ENCFF033MWR/@@download/ENCFF033MWR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF693QLZ bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF643CGH 663703835 ENCODE Processing Pipeline 49bbc3fd9602a6517ef0f0ad254cf730 https://www.encodeproject.org/files/ENCFF693QLZ/@@download/ENCFF693QLZ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth ENCFF696MVS bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF643CGH 844546760 ENCODE Processing Pipeline b3efd1a37829374433f051577a13905b https://www.encodeproject.org/files/ENCFF696MVS/@@download/ENCFF696MVS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF254ZSI bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF643CGH 523374752 ENCODE Processing Pipeline 1132ec96c00a0c748e8e4d9fa649da9d https://www.encodeproject.org/files/ENCFF254ZSI/@@download/ENCFF254ZSI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF664OEO bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF643CGH 666671843 ENCODE Processing Pipeline 13675d9c01b0c3da8645cd4ec2d0c2da https://www.encodeproject.org/files/ENCFF664OEO/@@download/ENCFF664OEO.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF025KWT bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF643CGH 752640777 ENCODE Processing Pipeline 4fa16acdb6d7d52b87915b34b8b85744 https://www.encodeproject.org/files/ENCFF025KWT/@@download/ENCFF025KWT.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF987KST bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF643CGH 1201924338 ENCODE Processing Pipeline 36bb89b932084ea2b3e288168dd5be15 https://www.encodeproject.org/files/ENCFF987KST/@@download/ENCFF987KST.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF870YIK bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF643CGH 1380787870 ENCODE Processing Pipeline 4cac27d6ec65a8edc248fdb14a63abfb https://www.encodeproject.org/files/ENCFF870YIK/@@download/ENCFF870YIK.bam GRCh38 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF783NXW bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF643CGH 657740067 ENCODE Processing Pipeline f3a213afb83fcb9c7e193d5ac6151cca https://www.encodeproject.org/files/ENCFF783NXW/@@download/ENCFF783NXW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591QUF bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF643CGH 588473000 ENCODE Processing Pipeline f3889bd9e33035cf5dcfc403b1e688e5 https://www.encodeproject.org/files/ENCFF591QUF/@@download/ENCFF591QUF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF242CZF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF643CGH 400521988 ENCODE Processing Pipeline 939d1ef1225e44285fc5127fc29e2b02 https://www.encodeproject.org/files/ENCFF242CZF/@@download/ENCFF242CZF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF021BPF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF643CGH 769651616 ENCODE Processing Pipeline 9ef6e73191c90ef1510a7033ba36d98c https://www.encodeproject.org/files/ENCFF021BPF/@@download/ENCFF021BPF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF916RTG bam alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF643CGH 707221137 ENCODE Processing Pipeline b1ca341a3c3f59580620754a65f5960f https://www.encodeproject.org/files/ENCFF916RTG/@@download/ENCFF916RTG.bam GRCh38 released low read length, low read depth control extremely low read depth ENCFF446TLJ bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF643CGH 398380900 ENCODE Processing Pipeline 0669c60d4c99ac197a5838cedec8d3d5 https://www.encodeproject.org/files/ENCFF446TLJ/@@download/ENCFF446TLJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF765NFJ bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF643CGH 552890628 ENCODE Processing Pipeline c17d13bf3339bdebb3b824bab11d6399 https://www.encodeproject.org/files/ENCFF765NFJ/@@download/ENCFF765NFJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF704XJN bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF643CGH 272164127 ENCODE Processing Pipeline d8c8392ab6b77a2a008954ccca66300a https://www.encodeproject.org/files/ENCFF704XJN/@@download/ENCFF704XJN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF263PSR bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF643CGH 779624046 ENCODE Processing Pipeline 68d513e1ed96206df12c4d7426d0cfbc https://www.encodeproject.org/files/ENCFF263PSR/@@download/ENCFF263PSR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF599CGM bam alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF643CGH, ENCFF741YBV, ENCFF746OCB 3580073893 ENCODE Processing Pipeline 9625ee4dc4617571a3fadf4b28ba2739 https://www.encodeproject.org/files/ENCFF599CGM/@@download/ENCFF599CGM.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF204TUQ bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF643CGH 246811240 ENCODE Processing Pipeline 377dca7f1fd60314e38691c3c3b7ae7d https://www.encodeproject.org/files/ENCFF204TUQ/@@download/ENCFF204TUQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF546IMN bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF643CGH 586250514 ENCODE Processing Pipeline 2386e332922f0541ce3244b8686354a3 https://www.encodeproject.org/files/ENCFF546IMN/@@download/ENCFF546IMN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF346OGN bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF643CGH 523293717 ENCODE Processing Pipeline ed1b8c9ac594cd80e440a26853856d7d https://www.encodeproject.org/files/ENCFF346OGN/@@download/ENCFF346OGN.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF559BCH bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF643CGH 585185519 ENCODE Processing Pipeline 5aaafeef9ef01480c9233609707779ce https://www.encodeproject.org/files/ENCFF559BCH/@@download/ENCFF559BCH.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF331BZT bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF643CGH 816973410 ENCODE Processing Pipeline ad615c734bfa775212b8b879156d577c https://www.encodeproject.org/files/ENCFF331BZT/@@download/ENCFF331BZT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF584HKJ bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF643CGH 213561783 ENCODE Processing Pipeline 0df6e10f43a11b0d1fa3fe7ce4420b43 https://www.encodeproject.org/files/ENCFF584HKJ/@@download/ENCFF584HKJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF994NWU bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF643CGH 674838876 ENCODE Processing Pipeline 14e16f804db4dc14920d597b8d45095d https://www.encodeproject.org/files/ENCFF994NWU/@@download/ENCFF994NWU.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF538VCH bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF643CGH 285968431 ENCODE Processing Pipeline 1c010d4c6c46ecb766d37f9624be0102 https://www.encodeproject.org/files/ENCFF538VCH/@@download/ENCFF538VCH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF636PUW bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF643CGH 423482031 ENCODE Processing Pipeline cdd5dde846d08cb2d73a005b9503ba76 https://www.encodeproject.org/files/ENCFF636PUW/@@download/ENCFF636PUW.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF877MTF bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF643CGH 635715326 ENCODE Processing Pipeline 3314eb02da0dfc98b49ed8e58597eef5 https://www.encodeproject.org/files/ENCFF877MTF/@@download/ENCFF877MTF.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF173DFX bam alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF643CGH 1083836834 ENCODE Processing Pipeline 964e5565ac53830123e1058c0ca68a21 https://www.encodeproject.org/files/ENCFF173DFX/@@download/ENCFF173DFX.bam GRCh38 released low read length, inconsistent platforms ENCFF880PHX bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF643CGH 425699962 ENCODE Processing Pipeline 790b61dcceee2ff47a44356e394e3ac5 https://www.encodeproject.org/files/ENCFF880PHX/@@download/ENCFF880PHX.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF802DHG bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF643CGH 318785452 ENCODE Processing Pipeline 7a3d5e8e271c36e8ee682cb921a9ee6b https://www.encodeproject.org/files/ENCFF802DHG/@@download/ENCFF802DHG.bam GRCh38 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF179ZBY bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF643CGH 1091053782 ENCODE Processing Pipeline b39be2f3af1fd76d82341e639ed1e02f https://www.encodeproject.org/files/ENCFF179ZBY/@@download/ENCFF179ZBY.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF870IWV bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF643CGH 1175725360 ENCODE Processing Pipeline 3c2ea19dd5d560e1160acb8d207d301f https://www.encodeproject.org/files/ENCFF870IWV/@@download/ENCFF870IWV.bam GRCh38 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF761FZT bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF643CGH 370854231 ENCODE Processing Pipeline 4fdbaacfe4a39e3f7b7348dc877e5f05 https://www.encodeproject.org/files/ENCFF761FZT/@@download/ENCFF761FZT.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF628ZLC bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF643CGH 573132669 ENCODE Processing Pipeline 125dfdc3afd6ff724ed16703110f348e https://www.encodeproject.org/files/ENCFF628ZLC/@@download/ENCFF628ZLC.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF460FPN bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF643CGH 1323854644 ENCODE Processing Pipeline 7de773e47535fbcfa197a2efea3ac334 https://www.encodeproject.org/files/ENCFF460FPN/@@download/ENCFF460FPN.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF682HUS bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF643CGH 1379189555 ENCODE Processing Pipeline 1cd6c6b083519cdcae9d3732cf37af94 https://www.encodeproject.org/files/ENCFF682HUS/@@download/ENCFF682HUS.bam GRCh38 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF613CHF bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF643CGH 456819221 ENCODE Processing Pipeline f943cea61994f2e7940963fd8ca3aafd https://www.encodeproject.org/files/ENCFF613CHF/@@download/ENCFF613CHF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF786INL bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF643CGH 610458076 ENCODE Processing Pipeline f86a737d27c0b28d3e5592ff5625d417 https://www.encodeproject.org/files/ENCFF786INL/@@download/ENCFF786INL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF867AMO bam alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF643CGH 3778127159 ENCODE Processing Pipeline b3c071c8c0394f7915f3a119e4db49d6 https://www.encodeproject.org/files/ENCFF867AMO/@@download/ENCFF867AMO.bam GRCh38 released low read depth, antibody characterized with exemption ENCFF657YTG bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF643CGH 280121613 ENCODE Processing Pipeline 30a0f4c3559ebe5b8b96c9fe336f5bb7 https://www.encodeproject.org/files/ENCFF657YTG/@@download/ENCFF657YTG.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF180WVL bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF643CGH, ENCFF890OZT 1093449653 ENCODE Processing Pipeline 72dc83a97a52f17921fa1de433079a73 https://www.encodeproject.org/files/ENCFF180WVL/@@download/ENCFF180WVL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF949KAW bam redacted alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF643CGH, ENCFF807RJJ 650522945 ENCODE Processing Pipeline 37f54ccacc2aa064eab6d2f957c22614 https://www.encodeproject.org/files/ENCFF949KAW/@@download/ENCFF949KAW.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF756RTB bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EHI, ENCFF002EHK, ENCFF643CGH 4179104793 ENCODE Processing Pipeline f4436f8390055bd1cdcaa14eeba4e88a https://www.encodeproject.org/files/ENCFF756RTB/@@download/ENCFF756RTB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF265XZZ bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF643CGH, ENCFF699KPK 3468357648 ENCODE Processing Pipeline 4b2be1fa5d207c97f3deac3958ce2b61 https://www.encodeproject.org/files/ENCFF265XZZ/@@download/ENCFF265XZZ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF401KIO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF643CGH 487812812 ENCODE Processing Pipeline 8531a957858f31e389f85b8844b2923c https://www.encodeproject.org/files/ENCFF401KIO/@@download/ENCFF401KIO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF398SXO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF643CGH 593850793 ENCODE Processing Pipeline 88209b545cbda3c0e4ec8efa5786855a https://www.encodeproject.org/files/ENCFF398SXO/@@download/ENCFF398SXO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF572IXE bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF643CGH 518681417 ENCODE Processing Pipeline c7cd790a1525c6cc10a02d80040266c2 https://www.encodeproject.org/files/ENCFF572IXE/@@download/ENCFF572IXE.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF835GHC bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF643CGH 434427599 ENCODE Processing Pipeline b7ad9c7e1d56011e159bbeac87966eaf https://www.encodeproject.org/files/ENCFF835GHC/@@download/ENCFF835GHC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF392GZX bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF643CGH 503955067 ENCODE Processing Pipeline 6175db3d2b797f9613fe5d7d997013fb https://www.encodeproject.org/files/ENCFF392GZX/@@download/ENCFF392GZX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF431ZVW bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF643CGH 520200983 ENCODE Processing Pipeline d6af1c4f47c11d7d3315049e9cc33cd9 https://www.encodeproject.org/files/ENCFF431ZVW/@@download/ENCFF431ZVW.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF902IUF bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF643CGH 303854787 ENCODE Processing Pipeline 0b7d97e48aed00e6f4753a3cfdf40906 https://www.encodeproject.org/files/ENCFF902IUF/@@download/ENCFF902IUF.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF603XOJ bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF643CGH 233791591 ENCODE Processing Pipeline c2640c58a8cf7ace101536ea8da8f1c7 https://www.encodeproject.org/files/ENCFF603XOJ/@@download/ENCFF603XOJ.bam GRCh38 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF405UYE bam alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF643CGH, ENCFF655KYQ 3805033588 ENCODE Processing Pipeline 3cebcfe7f124fed1d057ed42808906fb https://www.encodeproject.org/files/ENCFF405UYE/@@download/ENCFF405UYE.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF490SNQ bam alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF643CGH, ENCFF857XTL 3633523446 ENCODE Processing Pipeline 985cec4270ee99086706e127520d4161 https://www.encodeproject.org/files/ENCFF490SNQ/@@download/ENCFF490SNQ.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF717HZW bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF643CGH 360259329 ENCODE Processing Pipeline 0c6aeebcc154aae304d24aa9da6074dc https://www.encodeproject.org/files/ENCFF717HZW/@@download/ENCFF717HZW.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF105WJU bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF643CGH 437869432 ENCODE Processing Pipeline 56f3a0d30ebd4c9d8e7504ea6fe50187 https://www.encodeproject.org/files/ENCFF105WJU/@@download/ENCFF105WJU.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF012LYY bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF643CGH 380636347 ENCODE Processing Pipeline 219bb243c27e774a1fd629bd6b0ea26e https://www.encodeproject.org/files/ENCFF012LYY/@@download/ENCFF012LYY.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF314KHY bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF643CGH 476394945 ENCODE Processing Pipeline 725899a94528b0a247415b5bcfd87fcd https://www.encodeproject.org/files/ENCFF314KHY/@@download/ENCFF314KHY.bam GRCh38 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF123BAK bam alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF643CGH, ENCFF715ESG, ENCFF740EMX 3378272171 ENCODE Processing Pipeline b4460b304764802c67f989755a6e361a https://www.encodeproject.org/files/ENCFF123BAK/@@download/ENCFF123BAK.bam GRCh38 released antibody characterized with exemption ENCFF275OTT bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF643CGH 250937663 ENCODE Processing Pipeline 0c55dd33da9a46450c42193802647b65 https://www.encodeproject.org/files/ENCFF275OTT/@@download/ENCFF275OTT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF408DZP bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF643CGH 674152043 ENCODE Processing Pipeline 7e55ac6f2860ff178479a3b4390f9b01 https://www.encodeproject.org/files/ENCFF408DZP/@@download/ENCFF408DZP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF817FTZ bam alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF643CGH 454550648 ENCODE Processing Pipeline cb93e9422f9ce20af0b1fcce6d04f9a8 https://www.encodeproject.org/files/ENCFF817FTZ/@@download/ENCFF817FTZ.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF218YRX bam alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF768RJW, ENCFF788VTV 3849585935 ENCODE Processing Pipeline 5e188abc12b7d1e5599c8499c3d972ba https://www.encodeproject.org/files/ENCFF218YRX/@@download/ENCFF218YRX.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF527JNQ bam alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF643CGH 5127145120 ENCODE Processing Pipeline 8d097cf69c6bb61ec4b9feb38b760dac https://www.encodeproject.org/files/ENCFF527JNQ/@@download/ENCFF527JNQ.bam GRCh38 released antibody characterized with exemption missing control alignments ENCFF213JOK bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF643CGH 1025876348 ENCODE Processing Pipeline 8f24fbd966f9b45f47c488eab2d15ab5 https://www.encodeproject.org/files/ENCFF213JOK/@@download/ENCFF213JOK.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF988VSQ bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF643CGH 1135718560 ENCODE Processing Pipeline 4e05459f011a7889d4b83bef71e5364e https://www.encodeproject.org/files/ENCFF988VSQ/@@download/ENCFF988VSQ.bam GRCh38 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF905NBP bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF643CGH 91884798 ENCODE Processing Pipeline c1f26aa3587b5bf00c71680040fe99c4 https://www.encodeproject.org/files/ENCFF905NBP/@@download/ENCFF905NBP.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF677RAA bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF643CGH 446974378 ENCODE Processing Pipeline 3da0b85c65081a5e7fa1c936355e6eb1 https://www.encodeproject.org/files/ENCFF677RAA/@@download/ENCFF677RAA.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF416LJL bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF873QQB 506927863 ENCODE Processing Pipeline 89b5bd3c8c099013ce72359c181dc488 https://www.encodeproject.org/files/ENCFF416LJL/@@download/ENCFF416LJL.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF961HAZ bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF643CGH 331966338 ENCODE Processing Pipeline a16d6f763c3ca4699ad409dca82ac7c3 https://www.encodeproject.org/files/ENCFF961HAZ/@@download/ENCFF961HAZ.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF037VJL bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF643CGH 293759242 ENCODE Processing Pipeline f6a219a3686a139e28762c3b277d8345 https://www.encodeproject.org/files/ENCFF037VJL/@@download/ENCFF037VJL.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF115UJX bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF643CGH 607400278 ENCODE Processing Pipeline c3d44d2089ef1139c1a9bd4f977a02d7 https://www.encodeproject.org/files/ENCFF115UJX/@@download/ENCFF115UJX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF630ZLF bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF643CGH 565733029 ENCODE Processing Pipeline 12114d7aefabda233a0269dadd313795 https://www.encodeproject.org/files/ENCFF630ZLF/@@download/ENCFF630ZLF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF635PGS bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF643CGH 873498891 ENCODE Processing Pipeline d9fd91833978cdabf72a0784c9df874c https://www.encodeproject.org/files/ENCFF635PGS/@@download/ENCFF635PGS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF507TFC bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF643CGH 1264468403 ENCODE Processing Pipeline d1b881453df5e2c425df258571952462 https://www.encodeproject.org/files/ENCFF507TFC/@@download/ENCFF507TFC.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF697VPH bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF643CGH 2221003407 ENCODE Processing Pipeline 1c76822edae5df8fee50278a33dfa586 https://www.encodeproject.org/files/ENCFF697VPH/@@download/ENCFF697VPH.bam GRCh38 released biological replicates with identical biosample missing control alignments ENCFF456VOS bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF643CGH 573752081 ENCODE Processing Pipeline d7b4ddc9e2347d5e6103d62057696163 https://www.encodeproject.org/files/ENCFF456VOS/@@download/ENCFF456VOS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF610YXS bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF643CGH 520684007 ENCODE Processing Pipeline b0faa0dcce92e657108cc7e3e20ee0ed https://www.encodeproject.org/files/ENCFF610YXS/@@download/ENCFF610YXS.bam GRCh38 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF982EYL bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF643CGH 666216818 ENCODE Processing Pipeline 49c898ebfcb6b4221f741bd2a757e4e9 https://www.encodeproject.org/files/ENCFF982EYL/@@download/ENCFF982EYL.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF311TXI bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF643CGH 1033866310 ENCODE Processing Pipeline c56844ca7bd7b3ae9ba3859292ec4326 https://www.encodeproject.org/files/ENCFF311TXI/@@download/ENCFF311TXI.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF161SWW bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000XGV, ENCFF643CGH 824773721 ENCODE Processing Pipeline ba1fdeaeaffdddafe13287b84f6bfaa2 https://www.encodeproject.org/files/ENCFF161SWW/@@download/ENCFF161SWW.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF490YHN bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000XGX, ENCFF643CGH 526008927 ENCODE Processing Pipeline ba326c0f1506e5b09c4de3bb6316d634 https://www.encodeproject.org/files/ENCFF490YHN/@@download/ENCFF490YHN.bam GRCh38 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF563GAI bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF643CGH 204294354 ENCODE Processing Pipeline 26a6ec957e3d80b47ecfa76ce5f7381b https://www.encodeproject.org/files/ENCFF563GAI/@@download/ENCFF563GAI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF301OCC bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF643CGH 790575207 ENCODE Processing Pipeline 0e02f0a73440a47d5e3a00c1a754865f https://www.encodeproject.org/files/ENCFF301OCC/@@download/ENCFF301OCC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF292UNW bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF643CGH 818624080 ENCODE Processing Pipeline e5c7de678db2c1362378553401d69c31 https://www.encodeproject.org/files/ENCFF292UNW/@@download/ENCFF292UNW.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF031PGD bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF643CGH 882275737 ENCODE Processing Pipeline 5675b3c647c49ba696912f2f221b12c7 https://www.encodeproject.org/files/ENCFF031PGD/@@download/ENCFF031PGD.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF454MMY bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF643CGH 173515741 ENCODE Processing Pipeline 2ae305446e2f9ccff0aa694687976fe1 https://www.encodeproject.org/files/ENCFF454MMY/@@download/ENCFF454MMY.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF310MOR bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF643CGH 358057678 ENCODE Processing Pipeline d10690068504fe0172c3c4c3524ab20a https://www.encodeproject.org/files/ENCFF310MOR/@@download/ENCFF310MOR.bam GRCh38 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF728VLB bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF643CGH 821406334 ENCODE Processing Pipeline ed18b1d9558d063986f872cf26581bbe https://www.encodeproject.org/files/ENCFF728VLB/@@download/ENCFF728VLB.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF991ICQ bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF643CGH 628063006 ENCODE Processing Pipeline b79702a996fa9341f35917035e3de08a https://www.encodeproject.org/files/ENCFF991ICQ/@@download/ENCFF991ICQ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF594GDM bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF643CGH 597403198 ENCODE Processing Pipeline b9fa06fcb2a966523a863e4673d52053 https://www.encodeproject.org/files/ENCFF594GDM/@@download/ENCFF594GDM.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416LMF bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF643CGH 749066739 ENCODE Processing Pipeline b609df68118cb31c510a5495bdcb0f29 https://www.encodeproject.org/files/ENCFF416LMF/@@download/ENCFF416LMF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF893HMO bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF643CGH 365418600 ENCODE Processing Pipeline b9f8ee58b436bc3cb76f4025c7718018 https://www.encodeproject.org/files/ENCFF893HMO/@@download/ENCFF893HMO.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF531WAL bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF643CGH 341560311 ENCODE Processing Pipeline 342582630c18982c87d5bdd7af966372 https://www.encodeproject.org/files/ENCFF531WAL/@@download/ENCFF531WAL.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF844PQH bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF643CGH 826833650 ENCODE Processing Pipeline 1bb7f74459da4b5b9e0a2f27c226e268 https://www.encodeproject.org/files/ENCFF844PQH/@@download/ENCFF844PQH.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF906SNA bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF643CGH 1882138342 ENCODE Processing Pipeline 48294954282418dca0b0e0424b727710 https://www.encodeproject.org/files/ENCFF906SNA/@@download/ENCFF906SNA.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF365JHC bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF643CGH 536774164 ENCODE Processing Pipeline e45c99f2d5f7ba9569894b9cd0ea10bb https://www.encodeproject.org/files/ENCFF365JHC/@@download/ENCFF365JHC.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF992JEQ bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF643CGH 660356703 ENCODE Processing Pipeline 6c3773b13c9c2d674569ffb337e1d3ac https://www.encodeproject.org/files/ENCFF992JEQ/@@download/ENCFF992JEQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF789OGM bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF643CGH 539554730 ENCODE Processing Pipeline 8225bfb8ae576ed700c16205fc03aee5 https://www.encodeproject.org/files/ENCFF789OGM/@@download/ENCFF789OGM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF256XXT bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF643CGH 640281325 ENCODE Processing Pipeline 0297005a2213e6cb3f0ecd7554d3a3ea https://www.encodeproject.org/files/ENCFF256XXT/@@download/ENCFF256XXT.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF415SIE bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF643CGH 1012420132 ENCODE Processing Pipeline 9cbf074c7db96293bf987a5771626f43 https://www.encodeproject.org/files/ENCFF415SIE/@@download/ENCFF415SIE.bam GRCh38 released low read length biological replicates with identical biosample ENCFF916AFL bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF643CGH 1369436583 ENCODE Processing Pipeline 4dc725f2761c8ab8dff44947ce89e93e https://www.encodeproject.org/files/ENCFF916AFL/@@download/ENCFF916AFL.bam GRCh38 released low read length biological replicates with identical biosample ENCFF850FRG bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF643CGH 552219646 ENCODE Processing Pipeline 0dc27eaceb709b62302b71dc68fa45a6 https://www.encodeproject.org/files/ENCFF850FRG/@@download/ENCFF850FRG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF401BQM bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF643CGH 670034925 ENCODE Processing Pipeline 8c1cd145a568534df20e1a7f327813fa https://www.encodeproject.org/files/ENCFF401BQM/@@download/ENCFF401BQM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF209PKF bam alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF643CGH 746985008 ENCODE Processing Pipeline c788913e7807e83fc3ba7507254d4e32 https://www.encodeproject.org/files/ENCFF209PKF/@@download/ENCFF209PKF.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF998ZIK bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF643CGH 390861131 ENCODE Processing Pipeline 610024f03a08e92fb537337d071e7b36 https://www.encodeproject.org/files/ENCFF998ZIK/@@download/ENCFF998ZIK.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF299IMS bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF643CGH 664615914 ENCODE Processing Pipeline 3bd39567ccd8180cf05fe8096983105c https://www.encodeproject.org/files/ENCFF299IMS/@@download/ENCFF299IMS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF574FQP bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF643CGH 979496724 ENCODE Processing Pipeline 5a390e910fde404fecba8cb7ffb19b20 https://www.encodeproject.org/files/ENCFF574FQP/@@download/ENCFF574FQP.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF524CBX bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF643CGH 1128355702 ENCODE Processing Pipeline 52077107005bebec5e4040ac3711cb0c https://www.encodeproject.org/files/ENCFF524CBX/@@download/ENCFF524CBX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF191UHV bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF643CGH 266709769 ENCODE Processing Pipeline 46e097d33be62d58a10791ac36aab2f1 https://www.encodeproject.org/files/ENCFF191UHV/@@download/ENCFF191UHV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF665BAJ bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF643CGH 562405034 ENCODE Processing Pipeline 786a29b8b53155de71b35fd531814693 https://www.encodeproject.org/files/ENCFF665BAJ/@@download/ENCFF665BAJ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF113PPG bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF643CGH 433648575 ENCODE Processing Pipeline 25c01ef6c4935a9e7f833e8d38bf22a7 https://www.encodeproject.org/files/ENCFF113PPG/@@download/ENCFF113PPG.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF680VQE bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF643CGH 1234880565 ENCODE Processing Pipeline 5645dd4a92df0441c17fb1d48d2fed23 https://www.encodeproject.org/files/ENCFF680VQE/@@download/ENCFF680VQE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF548TKC bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XMT, ENCFF643CGH 534390329 ENCODE Processing Pipeline 7551e4f5434269a5dbc1d50aa5bf2153 https://www.encodeproject.org/files/ENCFF548TKC/@@download/ENCFF548TKC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF923FWK bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XMS, ENCFF643CGH 480019689 ENCODE Processing Pipeline 43fff192d99dd30f02f37ff6a502c8e2 https://www.encodeproject.org/files/ENCFF923FWK/@@download/ENCFF923FWK.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF946SJM bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF643CGH 523936487 ENCODE Processing Pipeline 2f756348abf7924828cdbfcafc9e7844 https://www.encodeproject.org/files/ENCFF946SJM/@@download/ENCFF946SJM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF086NWX bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF643CGH 653194705 ENCODE Processing Pipeline adc2880968b9e1b71b169f8bf8437cf3 https://www.encodeproject.org/files/ENCFF086NWX/@@download/ENCFF086NWX.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF149SVY bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF643CGH 387848734 ENCODE Processing Pipeline ab69887f554e8b46faf51d9b256fac8a https://www.encodeproject.org/files/ENCFF149SVY/@@download/ENCFF149SVY.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF161AGR bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF643CGH 826723641 ENCODE Processing Pipeline 3761ba7c95f7c3aa65ea6fc1d071f417 https://www.encodeproject.org/files/ENCFF161AGR/@@download/ENCFF161AGR.bam GRCh38 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF180DGV bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF643CGH 431439741 ENCODE Processing Pipeline dcae349866776bfc1dd9afd37e9c7b25 https://www.encodeproject.org/files/ENCFF180DGV/@@download/ENCFF180DGV.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF354ELR bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF643CGH 879858501 ENCODE Processing Pipeline 1c3c567156dc2043e496ca4630370452 https://www.encodeproject.org/files/ENCFF354ELR/@@download/ENCFF354ELR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF101DVO bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF643CGH 111098465 ENCODE Processing Pipeline 66fd18016246bdb0e9f1e4667f857315 https://www.encodeproject.org/files/ENCFF101DVO/@@download/ENCFF101DVO.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF175PHI bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF643CGH 1198589863 ENCODE Processing Pipeline dddd6a88fd57967b9a77c29a742d5909 https://www.encodeproject.org/files/ENCFF175PHI/@@download/ENCFF175PHI.bam GRCh38 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF784SCN bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF643CGH 438447819 ENCODE Processing Pipeline b5973d93299d0c5813c759b060824952 https://www.encodeproject.org/files/ENCFF784SCN/@@download/ENCFF784SCN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF778PDI bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF643CGH 691292650 ENCODE Processing Pipeline e8964b8c48ed513a5bedcad1b6f8772c https://www.encodeproject.org/files/ENCFF778PDI/@@download/ENCFF778PDI.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF319TCF bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF643CGH 1155405653 ENCODE Processing Pipeline 1ffaf62e02d79070e7341d1113e0bf2a https://www.encodeproject.org/files/ENCFF319TCF/@@download/ENCFF319TCF.bam GRCh38 released biological replicates with identical biosample ENCFF372IRO bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF643CGH 1405544549 ENCODE Processing Pipeline 1eaa3b39bb0e72f314493ac0a9e0eca4 https://www.encodeproject.org/files/ENCFF372IRO/@@download/ENCFF372IRO.bam GRCh38 released biological replicates with identical biosample ENCFF340JWK bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF643CGH 359755177 ENCODE Processing Pipeline 73d6aa313a2989308ff4864895fcfee5 https://www.encodeproject.org/files/ENCFF340JWK/@@download/ENCFF340JWK.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF779CRV bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF643CGH 361753558 ENCODE Processing Pipeline 5bac9acabf257870b0dcc4a40cf81ad5 https://www.encodeproject.org/files/ENCFF779CRV/@@download/ENCFF779CRV.bam GRCh38 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF079DUB bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF643CGH 686200736 ENCODE Processing Pipeline 8dc9291215448a1964aee6d8956a40b7 https://www.encodeproject.org/files/ENCFF079DUB/@@download/ENCFF079DUB.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF712MPW bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF643CGH 979513401 ENCODE Processing Pipeline 883ae5ff85be02f25e411a1c6e931a77 https://www.encodeproject.org/files/ENCFF712MPW/@@download/ENCFF712MPW.bam GRCh38 released low read length, low read depth biological replicates with identical biosample ENCFF685DBQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF643CGH 597166259 ENCODE Processing Pipeline 80b5127d561bdb6994947ba2a28da963 https://www.encodeproject.org/files/ENCFF685DBQ/@@download/ENCFF685DBQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF112XEQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF643CGH 827732842 ENCODE Processing Pipeline ca6046feb226861fd3d1836d81c05d7d https://www.encodeproject.org/files/ENCFF112XEQ/@@download/ENCFF112XEQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF746KIU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF643CGH 297455061 ENCODE Processing Pipeline 1821c7d555b0eedb5e1e3875f7592423 https://www.encodeproject.org/files/ENCFF746KIU/@@download/ENCFF746KIU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF765PTU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF643CGH 796478278 ENCODE Processing Pipeline 41d96a06f6309181ce7d94b25d8095bb https://www.encodeproject.org/files/ENCFF765PTU/@@download/ENCFF765PTU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF686FEO bam alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF643CGH 551459206 ENCODE Processing Pipeline de8d7a626ba2013767c72aef465383de https://www.encodeproject.org/files/ENCFF686FEO/@@download/ENCFF686FEO.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF642ALB bam alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF643CGH, ENCFF670ONL, ENCFF873BBZ 3287200902 ENCODE Processing Pipeline 738d59640cd3481296b317a7266adcee https://www.encodeproject.org/files/ENCFF642ALB/@@download/ENCFF642ALB.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF874XSI bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF643CGH 239292813 ENCODE Processing Pipeline a63497691fe84975f4d1c518a7bdeb25 https://www.encodeproject.org/files/ENCFF874XSI/@@download/ENCFF874XSI.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF464SZY bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF643CGH 260220547 ENCODE Processing Pipeline 89363f24e8fedd810fe4e5615d9d0f6b https://www.encodeproject.org/files/ENCFF464SZY/@@download/ENCFF464SZY.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF028WLP bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF643CGH 825966780 ENCODE Processing Pipeline eff51cc52c8c742b9bc189b40ad6e99a https://www.encodeproject.org/files/ENCFF028WLP/@@download/ENCFF028WLP.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF578TRZ bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF643CGH 805590555 ENCODE Processing Pipeline dcb1331fb3969e07a9ba30629697826b https://www.encodeproject.org/files/ENCFF578TRZ/@@download/ENCFF578TRZ.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF550JLY bam alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF643CGH, ENCFF816RTR 3285510660 ENCODE Processing Pipeline 9576ef4509767dcfb381a729bc6cbe16 https://www.encodeproject.org/files/ENCFF550JLY/@@download/ENCFF550JLY.bam GRCh38 released antibody characterized with exemption ENCFF998WUZ bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF643CGH 1090182255 ENCODE Processing Pipeline 7f1c5222fa39cd65654054407d161bb1 https://www.encodeproject.org/files/ENCFF998WUZ/@@download/ENCFF998WUZ.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF538IYG bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF643CGH, ENCFF769WTD 919651393 ENCODE Processing Pipeline f7d280e4f08dd317b2efd43158787124 https://www.encodeproject.org/files/ENCFF538IYG/@@download/ENCFF538IYG.bam GRCh38 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF026AUZ bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF643CGH 154529774 ENCODE Processing Pipeline 865ce1f4a2bf816196aa0e8bf5c5f82d https://www.encodeproject.org/files/ENCFF026AUZ/@@download/ENCFF026AUZ.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF892QTE bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF643CGH 424045795 ENCODE Processing Pipeline 20178deec41fe2b14e65bb9d8af858b1 https://www.encodeproject.org/files/ENCFF892QTE/@@download/ENCFF892QTE.bam GRCh38 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF867JLT bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF643CGH 220440971 ENCODE Processing Pipeline 301037d565fdb32de23a2b55bfce611d https://www.encodeproject.org/files/ENCFF867JLT/@@download/ENCFF867JLT.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF110MYH bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF643CGH 336701041 ENCODE Processing Pipeline cdfd2f47278045abf633d0afc08bfacf https://www.encodeproject.org/files/ENCFF110MYH/@@download/ENCFF110MYH.bam GRCh38 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF529ZVO bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF643CGH 432824575 ENCODE Processing Pipeline 34bfbe69f797dd0fc145d27df5fb7cab https://www.encodeproject.org/files/ENCFF529ZVO/@@download/ENCFF529ZVO.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF915BFX bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF643CGH 1422614432 ENCODE Processing Pipeline 06be902ca481596d1f8c431dc733fb49 https://www.encodeproject.org/files/ENCFF915BFX/@@download/ENCFF915BFX.bam GRCh38 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF703HTN bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF643CGH 613343067 ENCODE Processing Pipeline f05d504b421a6d5ec37f49a3694124c3 https://www.encodeproject.org/files/ENCFF703HTN/@@download/ENCFF703HTN.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF599NFC bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF643CGH 716736569 ENCODE Processing Pipeline 57b48a6cac317ae38edd4428d431d0d4 https://www.encodeproject.org/files/ENCFF599NFC/@@download/ENCFF599NFC.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF811FBC bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF643CGH 655468805 ENCODE Processing Pipeline 07d7b704dc8da840c712ad7bff5948d6 https://www.encodeproject.org/files/ENCFF811FBC/@@download/ENCFF811FBC.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF402WKZ bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF643CGH 727396961 ENCODE Processing Pipeline 1f5253e10f5ad42908f16a7b382bff94 https://www.encodeproject.org/files/ENCFF402WKZ/@@download/ENCFF402WKZ.bam GRCh38 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF552FKA bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF643CGH 939327840 ENCODE Processing Pipeline 4827dac74cbdc8934b8ddee33fc72b6b https://www.encodeproject.org/files/ENCFF552FKA/@@download/ENCFF552FKA.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF641ONS bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF643CGH 706238848 ENCODE Processing Pipeline 44f7bb5d63a662ca9846b3a6aae226e6 https://www.encodeproject.org/files/ENCFF641ONS/@@download/ENCFF641ONS.bam GRCh38 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF329LWM bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF643CGH 682820508 ENCODE Processing Pipeline 92f019effc0dde5f35af91880b0df07a https://www.encodeproject.org/files/ENCFF329LWM/@@download/ENCFF329LWM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF334QAB bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF643CGH 883001618 ENCODE Processing Pipeline 1f65ed54747371e6c05b24bdfe31b8ce https://www.encodeproject.org/files/ENCFF334QAB/@@download/ENCFF334QAB.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF430LDQ bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF643CGH 586587302 ENCODE Processing Pipeline b559a090185dd2dc186a2b17b75be89d https://www.encodeproject.org/files/ENCFF430LDQ/@@download/ENCFF430LDQ.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF173NYU bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF643CGH 299221163 ENCODE Processing Pipeline 345d025ba60e078b33128019623a6cff https://www.encodeproject.org/files/ENCFF173NYU/@@download/ENCFF173NYU.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF545GLE bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF643CGH 721752667 ENCODE Processing Pipeline 3a1f7f4ef370a40675701cfa5dbc9721 https://www.encodeproject.org/files/ENCFF545GLE/@@download/ENCFF545GLE.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF318YMR bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF643CGH 950489811 ENCODE Processing Pipeline 402ec21eb695a30a6de20ab93c770bed https://www.encodeproject.org/files/ENCFF318YMR/@@download/ENCFF318YMR.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF449ZGE bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF643CGH 530038680 ENCODE Processing Pipeline dc45a3930bf160f7e5ecd00276c927f6 https://www.encodeproject.org/files/ENCFF449ZGE/@@download/ENCFF449ZGE.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF392PMX bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF643CGH 724966904 ENCODE Processing Pipeline f07d1926c2f95cecabbfb7c8c2e781e2 https://www.encodeproject.org/files/ENCFF392PMX/@@download/ENCFF392PMX.bam GRCh38 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF035WPI bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF643CGH 405891671 ENCODE Processing Pipeline 7ba794f524c200845d41381016b2fc4d https://www.encodeproject.org/files/ENCFF035WPI/@@download/ENCFF035WPI.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF670DXN bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF643CGH 346660669 ENCODE Processing Pipeline d261b3a7fbd6c18cab7339bdcaf6b32d https://www.encodeproject.org/files/ENCFF670DXN/@@download/ENCFF670DXN.bam GRCh38 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF318GHN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF643CGH 369188505 ENCODE Processing Pipeline 76aad04dbb4dd5f2e902726ca80b20b1 https://www.encodeproject.org/files/ENCFF318GHN/@@download/ENCFF318GHN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF012QZM bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF643CGH 650655809 ENCODE Processing Pipeline 9ca1f2cdd2a59dc672ff002c5c61de85 https://www.encodeproject.org/files/ENCFF012QZM/@@download/ENCFF012QZM.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF480AYM bam alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF643CGH 2729072129 ENCODE Processing Pipeline 508aa8d6adbae6064453a0629a53f02e https://www.encodeproject.org/files/ENCFF480AYM/@@download/ENCFF480AYM.bam GRCh38 released antibody characterized with exemption experiment not submitted to GEO ENCFF932DKG bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF643CGH 586242205 ENCODE Processing Pipeline 1fbc42bef0f81e9428b8e0ddb3d5d1fa https://www.encodeproject.org/files/ENCFF932DKG/@@download/ENCFF932DKG.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF147JLU bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF643CGH 836228522 ENCODE Processing Pipeline b59fdf089f403f6a2eb9b7aa3e8b4448 https://www.encodeproject.org/files/ENCFF147JLU/@@download/ENCFF147JLU.bam GRCh38 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF313RZR bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF643CGH 482599241 ENCODE Processing Pipeline 6ae8d761eddcc3c2ecb2c46fd5144e06 https://www.encodeproject.org/files/ENCFF313RZR/@@download/ENCFF313RZR.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF649NFF bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF643CGH 881292251 ENCODE Processing Pipeline 862d6485bce72cd2070b5b2781e2ca39 https://www.encodeproject.org/files/ENCFF649NFF/@@download/ENCFF649NFF.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF309AXU bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF643CGH 370718804 ENCODE Processing Pipeline 58144ff3c7213e7b81041b541ba12be5 https://www.encodeproject.org/files/ENCFF309AXU/@@download/ENCFF309AXU.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF014MZL bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF643CGH 613928215 ENCODE Processing Pipeline 486f637776c042a5b811e03c07d1fabf https://www.encodeproject.org/files/ENCFF014MZL/@@download/ENCFF014MZL.bam GRCh38 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF602PRS bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF643CGH 364410770 ENCODE Processing Pipeline c83412a254e863c0c16dec967b6ca802 https://www.encodeproject.org/files/ENCFF602PRS/@@download/ENCFF602PRS.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF293LDW bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF643CGH 528375158 ENCODE Processing Pipeline 4015d89c6ea4853e0d61a4915d6a7457 https://www.encodeproject.org/files/ENCFF293LDW/@@download/ENCFF293LDW.bam GRCh38 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF690FZS bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF643CGH, ENCFF650WVN 589612159 ENCODE Processing Pipeline 4e7ab46a6f72034602379b7f65fdea40 https://www.encodeproject.org/files/ENCFF690FZS/@@download/ENCFF690FZS.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF500PUQ bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF643CGH 621711041 ENCODE Processing Pipeline dd68509cfd877ae37a6067270bb3fb32 https://www.encodeproject.org/files/ENCFF500PUQ/@@download/ENCFF500PUQ.bam GRCh38 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF438DHS bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF643CGH 612365247 ENCODE Processing Pipeline eed32ba312b25c9564c5e5f9d0d4d3d1 https://www.encodeproject.org/files/ENCFF438DHS/@@download/ENCFF438DHS.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF308RGN bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF643CGH 914277873 ENCODE Processing Pipeline 2130fc207690f965c7a70e73e6ee2d25 https://www.encodeproject.org/files/ENCFF308RGN/@@download/ENCFF308RGN.bam GRCh38 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF204QUC bam alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF643CGH, ENCFF829YZO 4255318741 ENCODE Processing Pipeline c439badc7f080b3c82308e77978c57fb https://www.encodeproject.org/files/ENCFF204QUC/@@download/ENCFF204QUC.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF536IZP bam alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF643CGH 3794774325 ENCODE Processing Pipeline e057b653a1525d32c42e6465b95749e6 https://www.encodeproject.org/files/ENCFF536IZP/@@download/ENCFF536IZP.bam GRCh38 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption