ENCFF439WCI bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEX, ENCFF018NEO 585818092 ENCODE Processing Pipeline dc7f0fd0395bb74c8d10511940588fb4 https://www.encodeproject.org/files/ENCFF439WCI/@@download/ENCFF439WCI.bam mm10 released low read length, low read depth insufficient read depth ENCFF683TKC bam alignments ENCSR000CBH ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEU, ENCFF018NEO 468270352 ENCODE Processing Pipeline 033f876d8caf2c4be6ea71c52402b271 https://www.encodeproject.org/files/ENCFF683TKC/@@download/ENCFF683TKC.bam mm10 released low read length, low read depth insufficient read depth ENCFF211WGC bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF589VTE 1019645119 ENCODE Processing Pipeline 1a6bdff7ec01b2fee8c2c4672fd8b9cb https://www.encodeproject.org/files/ENCFF211WGC/@@download/ENCFF211WGC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF587PZE bam alignments ENCSR471SJG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF898DBR 1054275598 ENCODE Processing Pipeline 079edd01995c18414952474cb5fccf6c https://www.encodeproject.org/files/ENCFF587PZE/@@download/ENCFF587PZE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF844PQK bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF982ZXD 1924219933 ENCODE Processing Pipeline f16309248d0ab1a616ef50cc44d8183f https://www.encodeproject.org/files/ENCFF844PQK/@@download/ENCFF844PQK.bam mm10 released sequencing runs labeled as technical replicates ENCFF148LKH bam alignments ENCSR263CKR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF930QZP, ENCFF940QAX 2062607173 ENCODE Processing Pipeline 23c4e6e58def4008804ebbd71120e293 https://www.encodeproject.org/files/ENCFF148LKH/@@download/ENCFF148LKH.bam mm10 released sequencing runs labeled as technical replicates ENCFF435JOP bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF787PLN 1346590400 ENCODE Processing Pipeline 21241514d7fd9918b681d73f6393c28f https://www.encodeproject.org/files/ENCFF435JOP/@@download/ENCFF435JOP.bam mm10 released mild to moderate bottlenecking ENCFF866UAI bam alignments ENCSR813SCQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF942SDR 1312431195 ENCODE Processing Pipeline db450bca59812ebadea28c649d4798df https://www.encodeproject.org/files/ENCFF866UAI/@@download/ENCFF866UAI.bam mm10 released mild to moderate bottlenecking ENCFF160ZOI bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF152LBP 2625643345 ENCODE Processing Pipeline 036459f04680075744e186effc6e200d https://www.encodeproject.org/files/ENCFF160ZOI/@@download/ENCFF160ZOI.bam mm10 released ENCFF310PSZ bam alignments ENCSR014MXQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF465MNR 2541530754 ENCODE Processing Pipeline 2e91d5cf67857bd8b970dca172b4880e https://www.encodeproject.org/files/ENCFF310PSZ/@@download/ENCFF310PSZ.bam mm10 released ENCFF811DWT bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF241ARU 2127407960 ENCODE Processing Pipeline a5b6b7584eda35fd2961cf1e9557870b https://www.encodeproject.org/files/ENCFF811DWT/@@download/ENCFF811DWT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF171KAM bam alignments ENCSR642ZLN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF744UTH 2401876875 ENCODE Processing Pipeline f9860281dfc5d098df284e151dc5758a https://www.encodeproject.org/files/ENCFF171KAM/@@download/ENCFF171KAM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF652NJR bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGV, ENCFF018NEO 1115349119 ENCODE Processing Pipeline 1930eccd17cbcfd57b76b19f49e70cc6 https://www.encodeproject.org/files/ENCFF652NJR/@@download/ENCFF652NJR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF453MJN bam alignments ENCSR977DCO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGO, ENCFF018NEO 1105016820 ENCODE Processing Pipeline 3418b5eea1f25b8c16a251b63e2108ea https://www.encodeproject.org/files/ENCFF453MJN/@@download/ENCFF453MJN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF369UUS bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESN, ENCFF018NEO, ENCFF718EPX 1027175666 ENCODE Processing Pipeline 82ec7b5db2794a1a720a574213578beb https://www.encodeproject.org/files/ENCFF369UUS/@@download/ENCFF369UUS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF458WQW bam alignments ENCSR251LFV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESM, ENCFF018NEO, ENCFF758YTO 1012695126 ENCODE Processing Pipeline 14008c2b49b701a638d666b327b414ad https://www.encodeproject.org/files/ENCFF458WQW/@@download/ENCFF458WQW.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF163YZP bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KPT, ENCFF018NEO 264501826 ENCODE Processing Pipeline 92a5400c524152f605f540ba1023eb19 https://www.encodeproject.org/files/ENCFF163YZP/@@download/ENCFF163YZP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF062IMN bam alignments ENCSR000CEW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPV, ENCFF018NEO 313805469 ENCODE Processing Pipeline 631451cf1819187098813480ff75f099 https://www.encodeproject.org/files/ENCFF062IMN/@@download/ENCFF062IMN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF636CIJ bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF002DSQ, ENCFF018NEO 1340435308 ENCODE Processing Pipeline 6207cfcaaecb27e18333a2e9bad0b043 https://www.encodeproject.org/files/ENCFF636CIJ/@@download/ENCFF636CIJ.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF296XDZ bam alignments ENCSR672UQX ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF002DSI, ENCFF002DSJ, ENCFF018NEO 1462437657 ENCODE Processing Pipeline a999d8acae9362a3839f679883b88df6 https://www.encodeproject.org/files/ENCFF296XDZ/@@download/ENCFF296XDZ.bam mm10 released mixed run types sequencing runs labeled as technical replicates control insufficient read depth ENCFF339ZWC bam alignments ENCSR000ERS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-human DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIM, ENCFF018NEO 438707879 ENCODE Processing Pipeline ee66d63014c0b74a4954e443eceaad85 https://www.encodeproject.org/files/ENCFF339ZWC/@@download/ENCFF339ZWC.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF404CGC bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF439UTP 1860422931 ENCODE Processing Pipeline 9a69f4f860378692ab5c0104037945eb https://www.encodeproject.org/files/ENCFF404CGC/@@download/ENCFF404CGC.bam mm10 released inconsistent platforms ENCFF342QJH bam alignments ENCSR410YIY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF949BVF 1599728652 ENCODE Processing Pipeline d10c043c79d96532ba246daac6d37993 https://www.encodeproject.org/files/ENCFF342QJH/@@download/ENCFF342QJH.bam mm10 released inconsistent platforms ENCFF867PLP bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF748RPL 1142043780 ENCODE Processing Pipeline 828fc141dd2372f8bc4f25a8d00c8a27 https://www.encodeproject.org/files/ENCFF867PLP/@@download/ENCFF867PLP.bam mm10 released mild to moderate bottlenecking ENCFF364XLJ bam alignments ENCSR106QSU ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF458LQQ 1147998796 ENCODE Processing Pipeline 380f5b85c6c9bdc2473b4b40132115f9 https://www.encodeproject.org/files/ENCFF364XLJ/@@download/ENCFF364XLJ.bam mm10 released mild to moderate bottlenecking ENCFF086SNO bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJE, ENCFF018NEO 1305393970 ENCODE Processing Pipeline 7dd564eafd781a126358bd5205f2c941 https://www.encodeproject.org/files/ENCFF086SNO/@@download/ENCFF086SNO.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF748IHX bam alignments ENCSR556ZUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJC, ENCFF018NEO 1382264880 ENCODE Processing Pipeline 0446b594949432d3af01a3a50030f039 https://www.encodeproject.org/files/ENCFF748IHX/@@download/ENCFF748IHX.bam mm10 released low read length, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF044IQW bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 364920972 ENCODE Processing Pipeline 771b1c575a449a767f4b021d19dada63 https://www.encodeproject.org/files/ENCFF044IQW/@@download/ENCFF044IQW.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF407CBS bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 335533230 ENCODE Processing Pipeline 898f04abbdc6dd072550bcde7c3fc965 https://www.encodeproject.org/files/ENCFF407CBS/@@download/ENCFF407CBS.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF885KOQ bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 473145811 ENCODE Processing Pipeline de672145d6c570756ed9e92db6c04c1b https://www.encodeproject.org/files/ENCFF885KOQ/@@download/ENCFF885KOQ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF098DDX bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 603235031 ENCODE Processing Pipeline 319605b6214dcca1d392ebf410ab8f02 https://www.encodeproject.org/files/ENCFF098DDX/@@download/ENCFF098DDX.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF903PGV bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF693VGJ 1462269713 ENCODE Processing Pipeline 4115dabb83f1fedfaff46dc5c494de9a https://www.encodeproject.org/files/ENCFF903PGV/@@download/ENCFF903PGV.bam mm10 released mild to moderate bottlenecking ENCFF322HXD bam alignments ENCSR784TLR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105EAY 1199110509 ENCODE Processing Pipeline 7e83dc39be57de0ce50cb1628319b7f9 https://www.encodeproject.org/files/ENCFF322HXD/@@download/ENCFF322HXD.bam mm10 released mild to moderate bottlenecking ENCFF426YPX bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWY, ENCFF018NEO 836015511 ENCODE Processing Pipeline 14949dad8cce46544f770c957bbdce40 https://www.encodeproject.org/files/ENCFF426YPX/@@download/ENCFF426YPX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF972ELN bam alignments ENCSR252GKD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXA, ENCFF018NEO 980138693 ENCODE Processing Pipeline fbd9b1a8ff6412919ca2a07c3feb565f https://www.encodeproject.org/files/ENCFF972ELN/@@download/ENCFF972ELN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF614XRG bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF066LAE, ENCFF557BAE 2252996974 ENCODE Processing Pipeline c1f910d70f9566b73025d6255ff61306 https://www.encodeproject.org/files/ENCFF614XRG/@@download/ENCFF614XRG.bam mm10 released sequencing runs labeled as technical replicates ENCFF970FNZ bam alignments ENCSR991FSR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF078PNM, ENCFF125ETQ, ENCFF202WAI 2038395489 ENCODE Processing Pipeline 9ba0108e151ce1018db6f17e27085988 https://www.encodeproject.org/files/ENCFF970FNZ/@@download/ENCFF970FNZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF472PUD bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF808TMS 950336476 ENCODE Processing Pipeline c51fe1519cfe62f1408264518cab3e2e https://www.encodeproject.org/files/ENCFF472PUD/@@download/ENCFF472PUD.bam mm10 released mild to moderate bottlenecking ENCFF979RFA bam alignments ENCSR161UUY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF330LYD 1505963768 ENCODE Processing Pipeline bdf00681e5c4eff3fe1b43fe6df67006 https://www.encodeproject.org/files/ENCFF979RFA/@@download/ENCFF979RFA.bam mm10 released mild to moderate bottlenecking ENCFF788JMC bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF116RSC, ENCFF386JTQ 2157676604 ENCODE Processing Pipeline 6a4c46cab34ecf2bf0d64a053ea8037e https://www.encodeproject.org/files/ENCFF788JMC/@@download/ENCFF788JMC.bam mm10 released sequencing runs labeled as technical replicates ENCFF340ACH bam alignments ENCSR770OXU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF341QIR 1889737648 ENCODE Processing Pipeline 57163fbf7a57ab86d403041ba67e1e4a https://www.encodeproject.org/files/ENCFF340ACH/@@download/ENCFF340ACH.bam mm10 released sequencing runs labeled as technical replicates ENCFF345AQI bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJO, ENCFF018NEO 931367600 ENCODE Processing Pipeline 59d82df25c5f66793671f883f8af18ec https://www.encodeproject.org/files/ENCFF345AQI/@@download/ENCFF345AQI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF212KHM bam alignments ENCSR037HLB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJQ, ENCFF018NEO 1270554292 ENCODE Processing Pipeline b417c215c365f0c895a29b1a7482d3a3 https://www.encodeproject.org/files/ENCFF212KHM/@@download/ENCFF212KHM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF171OVT bam alignments ENCSR000ADN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NCF, ENCFF001NCH, ENCFF018NEO 705826066 ENCODE Processing Pipeline 8be0e3299a0e36b3534b8484041bd382 https://www.encodeproject.org/files/ENCFF171OVT/@@download/ENCFF171OVT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF497FFT bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYY, ENCFF018NEO 832184366 ENCODE Processing Pipeline c2a55ae2ab28bcf7222cf005f44b954e https://www.encodeproject.org/files/ENCFF497FFT/@@download/ENCFF497FFT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF167TPO bam alignments ENCSR000ADQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYW, ENCFF018NEO 714572546 ENCODE Processing Pipeline ea30f9cbbcea7854491c6856d6009921 https://www.encodeproject.org/files/ENCFF167TPO/@@download/ENCFF167TPO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF296MWW bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZV, ENCFF018NEO 383021000 ENCODE Processing Pipeline c99f6bcb6196a34b399ad5f447c1c569 https://www.encodeproject.org/files/ENCFF296MWW/@@download/ENCFF296MWW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170HAX bam alignments ENCSR000ADR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZX, ENCFF018NEO 682807766 ENCODE Processing Pipeline e6125fc16d8314c050f74d3122dc7738 https://www.encodeproject.org/files/ENCFF170HAX/@@download/ENCFF170HAX.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF544BZW bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF254LLN 1147783786 ENCODE Processing Pipeline a146c778d2c519b48dbd5175f50b1cfa https://www.encodeproject.org/files/ENCFF544BZW/@@download/ENCFF544BZW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF010EYX bam alignments ENCSR415FLZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033RKM 1556584107 ENCODE Processing Pipeline 89a67a6d6bd4b7ce54c0383a983fcda6 https://www.encodeproject.org/files/ENCFF010EYX/@@download/ENCFF010EYX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF479KKI bam alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTU, ENCFF018NEO 484965069 ENCODE Processing Pipeline 3da3933b158a48711790454f75f290ce https://www.encodeproject.org/files/ENCFF479KKI/@@download/ENCFF479KKI.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF277LUN bam alignments ENCSR000ADU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTS, ENCFF018NEO 648070830 ENCODE Processing Pipeline 8b1d785fd4e4ca6f0a83c7de63266432 https://www.encodeproject.org/files/ENCFF277LUN/@@download/ENCFF277LUN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF426EFY bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVE, ENCFF018NEO 1741601224 ENCODE Processing Pipeline 732e42a80300dd2545aee4c9ad806296 https://www.encodeproject.org/files/ENCFF426EFY/@@download/ENCFF426EFY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF960HQZ bam alignments ENCSR000DHU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVG, ENCFF018NEO 2989909512 ENCODE Processing Pipeline a598cec34caf911f64d1afc0c23c8a0d https://www.encodeproject.org/files/ENCFF960HQZ/@@download/ENCFF960HQZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF287IGR bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYT, ENCFF018NEO 592671879 ENCODE Processing Pipeline 3e11acdaacc1bb5401765cda4b19ad2d https://www.encodeproject.org/files/ENCFF287IGR/@@download/ENCFF287IGR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF018LJX bam alignments ENCSR000CFE ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYU, ENCFF018NEO 926023107 ENCODE Processing Pipeline 37a25062f769ad93ea9448838e78ad87 https://www.encodeproject.org/files/ENCFF018LJX/@@download/ENCFF018LJX.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF206UPH bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MXF, ENCFF018NEO 626201426 ENCODE Processing Pipeline 6284823d28a86d37d3f6a1979965cc0e https://www.encodeproject.org/files/ENCFF206UPH/@@download/ENCFF206UPH.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF345EVO bam alignments ENCSR000ADI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001MXH, ENCFF018NEO 635257996 ENCODE Processing Pipeline 16ff087706ca4df5cfa7d2e0e5bf841b https://www.encodeproject.org/files/ENCFF345EVO/@@download/ENCFF345EVO.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF081EGW bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 768147722 ENCODE Processing Pipeline 0439c0b05160aadeab7171194be651a1 https://www.encodeproject.org/files/ENCFF081EGW/@@download/ENCFF081EGW.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627DYN bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 807967242 ENCODE Processing Pipeline 0712832e76da92124e3c872cf04e5a7c https://www.encodeproject.org/files/ENCFF627DYN/@@download/ENCFF627DYN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF440VFN bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESY, ENCFF018NEO, ENCFF945DAW 1198218216 ENCODE Processing Pipeline 9ca94529207f78125c6bcded26f60f0f https://www.encodeproject.org/files/ENCFF440VFN/@@download/ENCFF440VFN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF151AXQ bam alignments ENCSR387YSD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESZ, ENCFF018NEO, ENCFF129NMB 1246173484 ENCODE Processing Pipeline 8678da297cbf5c9d7eed7cee0fca623d https://www.encodeproject.org/files/ENCFF151AXQ/@@download/ENCFF151AXQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF530QAI bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF429LRO 2192643255 ENCODE Processing Pipeline 2153394698a4113bca5dbd6ce89e948d https://www.encodeproject.org/files/ENCFF530QAI/@@download/ENCFF530QAI.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF451DSW bam alignments ENCSR840QFC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF448EWF, ENCFF831OJP 2733542814 ENCODE Processing Pipeline 16b33c9b5fa1e1d7809492e5e252ab16 https://www.encodeproject.org/files/ENCFF451DSW/@@download/ENCFF451DSW.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates ENCFF098HSW bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF853ZDE 2791574504 ENCODE Processing Pipeline aa853842466864c5695ac77a6556375c https://www.encodeproject.org/files/ENCFF098HSW/@@download/ENCFF098HSW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF805AXD bam alignments ENCSR351BDM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF761WLY, ENCFF891IWG 2756727749 ENCODE Processing Pipeline 33b2c6c06325ae416ff796d6326601bf https://www.encodeproject.org/files/ENCFF805AXD/@@download/ENCFF805AXD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF643WUI bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF743HQG 2624856413 ENCODE Processing Pipeline fe39eeeae7f0df89ab1812e889eb50c1 https://www.encodeproject.org/files/ENCFF643WUI/@@download/ENCFF643WUI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF916TFR bam alignments ENCSR748XBE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF110DYF, ENCFF306EGG, ENCFF507RYO 2792497944 ENCODE Processing Pipeline fa67903582d63e1dc170514d1120eaf4 https://www.encodeproject.org/files/ENCFF916TFR/@@download/ENCFF916TFR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF134ATU bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSR, ENCFF018NEO 854291102 ENCODE Processing Pipeline d36e86d635a1699004d4fa518b215105 https://www.encodeproject.org/files/ENCFF134ATU/@@download/ENCFF134ATU.bam mm10 released low read length, low read depth ENCFF985VSV bam alignments ENCSR734IEL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSU, ENCFF018NEO 1027408594 ENCODE Processing Pipeline 8103cfa49215a6acd0212d86afc8c909 https://www.encodeproject.org/files/ENCFF985VSV/@@download/ENCFF985VSV.bam mm10 released low read length, low read depth ENCFF302JPF bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF024BJF 1482416411 ENCODE Processing Pipeline 4180116c917f020d0456b849ef41b102 https://www.encodeproject.org/files/ENCFF302JPF/@@download/ENCFF302JPF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF218JCM bam alignments ENCSR525BTK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF842RMF 1390805493 ENCODE Processing Pipeline f98f12d3311b1958fc69def94f54ad62 https://www.encodeproject.org/files/ENCFF218JCM/@@download/ENCFF218JCM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF196TGU bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF431MBE 1748757859 ENCODE Processing Pipeline 3f9b7da3f3e5f380116ccace9bc47692 https://www.encodeproject.org/files/ENCFF196TGU/@@download/ENCFF196TGU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF960GUP bam alignments ENCSR486MHP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178ESG 1647813835 ENCODE Processing Pipeline c7de190994de8eedbd3ae48272320d9c https://www.encodeproject.org/files/ENCFF960GUP/@@download/ENCFF960GUP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF669SYQ bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETA, ENCFF018NEO 675156753 ENCODE Processing Pipeline 847c8c981422dcb629bb011ec672007d https://www.encodeproject.org/files/ENCFF669SYQ/@@download/ENCFF669SYQ.bam mm10 released low read length, control low read depth, low read depth ENCFF393XAJ bam alignments ENCSR100DLL ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETB, ENCFF018NEO 699121266 ENCODE Processing Pipeline 75d97d531f92cefc6cbc16cf7dc9c41a https://www.encodeproject.org/files/ENCFF393XAJ/@@download/ENCFF393XAJ.bam mm10 released low read length, control low read depth, low read depth ENCFF987PDS bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZK, ENCFF018NEO 356172620 ENCODE Processing Pipeline 3d9a240635681be0c077798fd4fe95cd https://www.encodeproject.org/files/ENCFF987PDS/@@download/ENCFF987PDS.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF461JKM bam alignments ENCSR000CDC ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZM, ENCFF018NEO 393436700 ENCODE Processing Pipeline 8860a7b3e0256755aa99c37cb525bfb8 https://www.encodeproject.org/files/ENCFF461JKM/@@download/ENCFF461JKM.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF796FRP bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 733007994 ENCODE Processing Pipeline bc6406cd26a4a6efa716e3b575721dab https://www.encodeproject.org/files/ENCFF796FRP/@@download/ENCFF796FRP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF878FUZ bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 433815532 ENCODE Processing Pipeline bdbe1228ba154432285e481865455e0b https://www.encodeproject.org/files/ENCFF878FUZ/@@download/ENCFF878FUZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF856WFI bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUY, ENCFF018NEO 510046722 ENCODE Processing Pipeline 69ffa9c4981f92deb7aedf09b260c60d https://www.encodeproject.org/files/ENCFF856WFI/@@download/ENCFF856WFI.bam mm10 released low read length, low read depth ENCFF886TCK bam alignments ENCSR317ENO ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVC, ENCFF018NEO 712127913 ENCODE Processing Pipeline b88024361d8201d0f73d474283cc192c https://www.encodeproject.org/files/ENCFF886TCK/@@download/ENCFF886TCK.bam mm10 released low read length, low read depth ENCFF275UXH bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF295TMX 1673796810 ENCODE Processing Pipeline 0853051077bc04749eb963aa642e0ea5 https://www.encodeproject.org/files/ENCFF275UXH/@@download/ENCFF275UXH.bam mm10 released inconsistent platforms ENCFF552LAL bam alignments ENCSR744LCN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF568JIO 1368192575 ENCODE Processing Pipeline 7ca26341f951aa1d813560e39d7d09cd https://www.encodeproject.org/files/ENCFF552LAL/@@download/ENCFF552LAL.bam mm10 released inconsistent platforms ENCFF492ISD bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF817UHS 1744051956 ENCODE Processing Pipeline 2c92066874879b72cb4f2303c447dc2b https://www.encodeproject.org/files/ENCFF492ISD/@@download/ENCFF492ISD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF032YBV bam alignments ENCSR347BFO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF237XAA 1849572557 ENCODE Processing Pipeline 1c4d0ea5f1c2e79b9d338a54df7ab85b https://www.encodeproject.org/files/ENCFF032YBV/@@download/ENCFF032YBV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF487MBJ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 944782207 ENCODE Processing Pipeline 6dbe349c984318d4c8ac029d746dd73a https://www.encodeproject.org/files/ENCFF487MBJ/@@download/ENCFF487MBJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF650EPZ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 737187547 ENCODE Processing Pipeline cacacbdafbd2c36836cb2194c2d2196e https://www.encodeproject.org/files/ENCFF650EPZ/@@download/ENCFF650EPZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF199HTM bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1145017532 ENCODE Processing Pipeline 77427bb70e36a17d41bde2be9c7e7680 https://www.encodeproject.org/files/ENCFF199HTM/@@download/ENCFF199HTM.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF720JCR bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 643432288 ENCODE Processing Pipeline 99532c61cb2d0e26b1766a1363e7ab24 https://www.encodeproject.org/files/ENCFF720JCR/@@download/ENCFF720JCR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF986SRM bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF385WWG 1072765504 ENCODE Processing Pipeline 950c3d0d0d0b72ae85c18efc297bf1dd https://www.encodeproject.org/files/ENCFF986SRM/@@download/ENCFF986SRM.bam mm10 released inconsistent platforms ENCFF958RLB bam alignments ENCSR864DSI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF236CAK 1331616569 ENCODE Processing Pipeline 5062213b0e44ca2fff11cf7b332a13e7 https://www.encodeproject.org/files/ENCFF958RLB/@@download/ENCFF958RLB.bam mm10 released inconsistent platforms ENCFF624WZX bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 827048225 ENCODE Processing Pipeline 4984abc24d5bbb7abbc426b59c8aa4b5 https://www.encodeproject.org/files/ENCFF624WZX/@@download/ENCFF624WZX.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF049QHC bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 932950273 ENCODE Processing Pipeline 58bf61d6d3703e7ac42ee16f63afb549 https://www.encodeproject.org/files/ENCFF049QHC/@@download/ENCFF049QHC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF818YUU bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGS, ENCFF018NEO, ENCFF277WTS 1047073454 ENCODE Processing Pipeline 239fb689a18f913ea291a9f5a206c042 https://www.encodeproject.org/files/ENCFF818YUU/@@download/ENCFF818YUU.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF385YIJ bam alignments ENCSR250LXH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGQ, ENCFF018NEO 1012135863 ENCODE Processing Pipeline 23bbbac881d2efdd794aeeff792f4e5b https://www.encodeproject.org/files/ENCFF385YIJ/@@download/ENCFF385YIJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF933NMB bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF754ZVE 1252978770 ENCODE Processing Pipeline c12668b74e034fd3523fdc49aad1a9ac https://www.encodeproject.org/files/ENCFF933NMB/@@download/ENCFF933NMB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF842AYU bam alignments ENCSR968NPX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF881YFX 1240527352 ENCODE Processing Pipeline 53482b3bd85997d662370c6388585664 https://www.encodeproject.org/files/ENCFF842AYU/@@download/ENCFF842AYU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF792NIX bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF341KOU, ENCFF764CLM 3216293146 ENCODE Processing Pipeline 083da0a360a93e26af67f3c254ef85b8 https://www.encodeproject.org/files/ENCFF792NIX/@@download/ENCFF792NIX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF378FUS bam alignments ENCSR928IYZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF444TRZ, ENCFF471CTL 3581979141 ENCODE Processing Pipeline 30ee893c03da56bfedc7dda2886c7822 https://www.encodeproject.org/files/ENCFF378FUS/@@download/ENCFF378FUS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF203GWC bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF225MZS 1356774221 ENCODE Processing Pipeline f16ebbcc6a1ba0b1bbfc9b71ddbac493 https://www.encodeproject.org/files/ENCFF203GWC/@@download/ENCFF203GWC.bam mm10 released mild to moderate bottlenecking ENCFF925KNX bam alignments ENCSR688ZOR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF844GKL 1399020358 ENCODE Processing Pipeline 7d61933e2b5ee8a2fba9d1458cb9cdee https://www.encodeproject.org/files/ENCFF925KNX/@@download/ENCFF925KNX.bam mm10 released mild to moderate bottlenecking ENCFF540HFT bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AHS, ENCFF018NEO 1241547090 ENCODE Processing Pipeline cb6ab300b79224118abdd5a1d76f2e7b https://www.encodeproject.org/files/ENCFF540HFT/@@download/ENCFF540HFT.bam mm10 released insufficient read depth, control insufficient read depth ENCFF562SMG bam alignments ENCSR066XXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AHT, ENCFF018NEO 1253959340 ENCODE Processing Pipeline d025f4787834736ff6991b0de16dbee5 https://www.encodeproject.org/files/ENCFF562SMG/@@download/ENCFF562SMG.bam mm10 released insufficient read depth, control insufficient read depth ENCFF935OGA bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF171LNV 1599018732 ENCODE Processing Pipeline d3bf8920d7bc5ad37f8b9a7e7d880e04 https://www.encodeproject.org/files/ENCFF935OGA/@@download/ENCFF935OGA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF327HTH bam alignments ENCSR975QEX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF580KHT, ENCFF786TLD 1789121532 ENCODE Processing Pipeline d9e86d74bbd2a3cc7a94fbb0ac5b6b85 https://www.encodeproject.org/files/ENCFF327HTH/@@download/ENCFF327HTH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF741HOY bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF346LFH, ENCFF630SQJ 2406496693 ENCODE Processing Pipeline 4df4482284a14d19c3013198484cc078 https://www.encodeproject.org/files/ENCFF741HOY/@@download/ENCFF741HOY.bam mm10 released sequencing runs labeled as technical replicates ENCFF104UXG bam alignments ENCSR646GHA ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF440KRN 2635876228 ENCODE Processing Pipeline 8a1caf404a2022278af4cf729cc02b3d https://www.encodeproject.org/files/ENCFF104UXG/@@download/ENCFF104UXG.bam mm10 released sequencing runs labeled as technical replicates ENCFF710GWJ bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF505FOW 1166080557 ENCODE Processing Pipeline ead8d2fd9c4b59d6975a26facdba1162 https://www.encodeproject.org/files/ENCFF710GWJ/@@download/ENCFF710GWJ.bam mm10 released mild to moderate bottlenecking ENCFF935UMH bam alignments ENCSR195NDO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF526MLY 1267127569 ENCODE Processing Pipeline f730048dae77d906552e7e5f07fcea71 https://www.encodeproject.org/files/ENCFF935UMH/@@download/ENCFF935UMH.bam mm10 released mild to moderate bottlenecking ENCFF317EGK bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF557IPG 1377543504 ENCODE Processing Pipeline 8581e3535c8180b67b98a012e0a9450d https://www.encodeproject.org/files/ENCFF317EGK/@@download/ENCFF317EGK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF705OKE bam alignments ENCSR831EKS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF664DHP 1245103552 ENCODE Processing Pipeline 944814ea412ee5b39d4d6cc0e23950f3 https://www.encodeproject.org/files/ENCFF705OKE/@@download/ENCFF705OKE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF583MKP bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESD, ENCFF018NEO 1147784817 ENCODE Processing Pipeline 3cc596c6d1e16cd36923e902aa8357d7 https://www.encodeproject.org/files/ENCFF583MKP/@@download/ENCFF583MKP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF060DCN bam alignments ENCSR658BBG ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESA, ENCFF018NEO 1015428200 ENCODE Processing Pipeline 3616571f0e6cf0133c3168621578ba38 https://www.encodeproject.org/files/ENCFF060DCN/@@download/ENCFF060DCN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF225RAW bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRE, ENCFF018NEO 1008225010 ENCODE Processing Pipeline 1e026ce5d38db657c2b38da10f6e8d37 https://www.encodeproject.org/files/ENCFF225RAW/@@download/ENCFF225RAW.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF160ZFG bam alignments ENCSR976GSO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRF, ENCFF002DRG, ENCFF018NEO 1435274058 ENCODE Processing Pipeline ce9d68a655965da7214051059f34f54f https://www.encodeproject.org/files/ENCFF160ZFG/@@download/ENCFF160ZFG.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF099HKS bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPE, ENCFF018NEO 322224050 ENCODE Processing Pipeline b978a50a8ae2c58e0fb39a29604676c1 https://www.encodeproject.org/files/ENCFF099HKS/@@download/ENCFF099HKS.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF201IXE bam alignments ENCSR000CAZ ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPG, ENCFF018NEO 338582592 ENCODE Processing Pipeline 1b682a0eca4377b9bec1479dd2714521 https://www.encodeproject.org/files/ENCFF201IXE/@@download/ENCFF201IXE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF604KPS bam alignments ENCSR993MMD ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF172HFY 990061171 ENCODE Processing Pipeline 13b44f54e84df47913a281f29376e04f https://www.encodeproject.org/files/ENCFF604KPS/@@download/ENCFF604KPS.bam mm10 released insufficient read depth for broad peaks control ENCFF862XUW bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KKE, ENCFF018NEO 273247827 ENCODE Processing Pipeline dd8c96a0d14db48bb9fa2fbc2bf50be1 https://www.encodeproject.org/files/ENCFF862XUW/@@download/ENCFF862XUW.bam mm10 released low read length, low read depth extremely low read depth ENCFF396FNQ bam alignments ENCSR000CAW ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KKF, ENCFF018NEO 606097430 ENCODE Processing Pipeline bb3f94b827676d7fbfd24ef51636b121 https://www.encodeproject.org/files/ENCFF396FNQ/@@download/ENCFF396FNQ.bam mm10 released low read length, low read depth extremely low read depth ENCFF539VSP bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGA, ENCFF018NEO 1032007611 ENCODE Processing Pipeline 805c04e84cb12ac902c52ceff8f26135 https://www.encodeproject.org/files/ENCFF539VSP/@@download/ENCFF539VSP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF572CFF bam alignments ENCSR953LFI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGC, ENCFF018NEO, ENCFF203TXU 1126300284 ENCODE Processing Pipeline ff10bfdad5796225a57812184062e0b2 https://www.encodeproject.org/files/ENCFF572CFF/@@download/ENCFF572CFF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF125FAE bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF272FYH, ENCFF410JAO, ENCFF880ZJK 2609734979 ENCODE Processing Pipeline 5084e3d7885e8c8128f8b9ca99fe278a https://www.encodeproject.org/files/ENCFF125FAE/@@download/ENCFF125FAE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF580YCN bam alignments ENCSR240XQT ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ZUV, ENCFF764CBH, ENCFF766DAD 3375406725 ENCODE Processing Pipeline 0e55571e78f30a4e8b7f8d3e0fc679e8 https://www.encodeproject.org/files/ENCFF580YCN/@@download/ENCFF580YCN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF815MRR bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHP, ENCFF018NEO 1143467576 ENCODE Processing Pipeline 159639ad676080a2ecd22ee624bed065 https://www.encodeproject.org/files/ENCFF815MRR/@@download/ENCFF815MRR.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF851MHM bam alignments ENCSR227UTY ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHQ, ENCFF018NEO 1064276749 ENCODE Processing Pipeline f016c85453e255e3ccd21fa32bb7087f https://www.encodeproject.org/files/ENCFF851MHM/@@download/ENCFF851MHM.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF135EEH bam alignments ENCSR264HIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF184PEP 973677261 ENCODE Processing Pipeline 6c9cf1f938e5bf77ec4beb1ef6c78777 https://www.encodeproject.org/files/ENCFF135EEH/@@download/ENCFF135EEH.bam mm10 released low read depth ENCFF355NIR bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALB, ENCFF018NEO 969244375 ENCODE Processing Pipeline 36bf3fd1bda1af8faf71b059817c2001 https://www.encodeproject.org/files/ENCFF355NIR/@@download/ENCFF355NIR.bam mm10 released mild to moderate bottlenecking ENCFF708OEB bam alignments ENCSR924FJQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALG, ENCFF018NEO 1086348643 ENCODE Processing Pipeline 9ec2024c1b9553ba24b868f59ff8e2ee https://www.encodeproject.org/files/ENCFF708OEB/@@download/ENCFF708OEB.bam mm10 released mild to moderate bottlenecking ENCFF285XPR bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF292YPK, ENCFF883NHJ 2606631329 ENCODE Processing Pipeline d25de6a07d61a023be378f379f251eb2 https://www.encodeproject.org/files/ENCFF285XPR/@@download/ENCFF285XPR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF627RIT bam alignments ENCSR780JSE ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF684JPM, ENCFF710GYU 2648315894 ENCODE Processing Pipeline 5b2a4e03bdb56793d331996210667cdb https://www.encodeproject.org/files/ENCFF627RIT/@@download/ENCFF627RIT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF585XLF bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOH, ENCFF018NEO 1268052501 ENCODE Processing Pipeline 509473d77f4b5112c77f22a88d3016ca https://www.encodeproject.org/files/ENCFF585XLF/@@download/ENCFF585XLF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF393KEH bam alignments ENCSR898WIS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOL, ENCFF018NEO 1094868510 ENCODE Processing Pipeline 03a826b46f066cd4730a5cdd333367e9 https://www.encodeproject.org/files/ENCFF393KEH/@@download/ENCFF393KEH.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF313FDX bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEQ, ENCFF018NEO 754278179 ENCODE Processing Pipeline 1872698034c67c2180340e9c986592e5 https://www.encodeproject.org/files/ENCFF313FDX/@@download/ENCFF313FDX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF603MJM bam alignments ENCSR057SHA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEU, ENCFF018NEO 841048313 ENCODE Processing Pipeline 6f91d6a5f4d72fe86e3eb511389b610b https://www.encodeproject.org/files/ENCFF603MJM/@@download/ENCFF603MJM.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF951HWD bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 802123234 ENCODE Processing Pipeline 0f641534e8c230c05c6ef7a72527df05 https://www.encodeproject.org/files/ENCFF951HWD/@@download/ENCFF951HWD.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF298QFB bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1008468872 ENCODE Processing Pipeline 043847caf9a1174e107b33b9f3b8afdf https://www.encodeproject.org/files/ENCFF298QFB/@@download/ENCFF298QFB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF717GHT bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSI, ENCFF018NEO 1181913717 ENCODE Processing Pipeline 5fd839eb1794b039b637f1aa33869277 https://www.encodeproject.org/files/ENCFF717GHT/@@download/ENCFF717GHT.bam mm10 released low read length control insufficient read depth ENCFF258ZNR bam alignments ENCSR961MEP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSJ, ENCFF018NEO 1004035000 ENCODE Processing Pipeline 9f39c5c373d10c45e52d43f6f2fb8f8c https://www.encodeproject.org/files/ENCFF258ZNR/@@download/ENCFF258ZNR.bam mm10 released low read length control insufficient read depth ENCFF609FSJ bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF934XTI 1017423075 ENCODE Processing Pipeline a097f61dac550f5ced5988965ca1d67c https://www.encodeproject.org/files/ENCFF609FSJ/@@download/ENCFF609FSJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF142UWE bam alignments ENCSR406KDB ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF703KDO 1143610326 ENCODE Processing Pipeline 277199075411117f5f241cf56536b81e https://www.encodeproject.org/files/ENCFF142UWE/@@download/ENCFF142UWE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF865QGZ bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF167BYV, ENCFF847CPG 2304761897 ENCODE Processing Pipeline f1c68fbfd44b58473c36b6ff9c621b7c https://www.encodeproject.org/files/ENCFF865QGZ/@@download/ENCFF865QGZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF438RYK bam alignments ENCSR680ZSE ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF803RGE, ENCFF832IQF 2421250630 ENCODE Processing Pipeline ae55ab7046ef2b0a1a18608c70322a22 https://www.encodeproject.org/files/ENCFF438RYK/@@download/ENCFF438RYK.bam mm10 released sequencing runs labeled as technical replicates ENCFF520SPV bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKQ, ENCFF018NEO 1113049935 ENCODE Processing Pipeline 48434830cc3055d2a675e406b4321392 https://www.encodeproject.org/files/ENCFF520SPV/@@download/ENCFF520SPV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF983REC bam alignments ENCSR534HMF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKR, ENCFF018NEO 891597272 ENCODE Processing Pipeline b036ad07cb11ba323c6878fdef7754c2 https://www.encodeproject.org/files/ENCFF983REC/@@download/ENCFF983REC.bam mm10 released low read length, mild to moderate bottlenecking ENCFF548PJI bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWP, ENCFF018NEO 1056475976 ENCODE Processing Pipeline 421dd65a7dbffcda18927e0bf7e15569 https://www.encodeproject.org/files/ENCFF548PJI/@@download/ENCFF548PJI.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF867JQI bam alignments ENCSR553IWV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF411DQQ 767164379 ENCODE Processing Pipeline 42cff60d2eab4db6a742263ab030a793 https://www.encodeproject.org/files/ENCFF867JQI/@@download/ENCFF867JQI.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF485DDP bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF050XVW 1098428017 ENCODE Processing Pipeline deaba8d81b60ee07bad4f716e1dcf593 https://www.encodeproject.org/files/ENCFF485DDP/@@download/ENCFF485DDP.bam mm10 released inconsistent platforms, control low read depth ENCFF170JCI bam alignments ENCSR299DRH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF820LNT 1057678541 ENCODE Processing Pipeline 872734703cde0f4a10a5b82dea5074b5 https://www.encodeproject.org/files/ENCFF170JCI/@@download/ENCFF170JCI.bam mm10 released inconsistent platforms, control low read depth ENCFF716BZP bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWE, ENCFF018NEO 1150565336 ENCODE Processing Pipeline 6cec6a3cc69be9d5d13931dc873e1d85 https://www.encodeproject.org/files/ENCFF716BZP/@@download/ENCFF716BZP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF095YRX bam alignments ENCSR846PJO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWB, ENCFF018NEO 1071713309 ENCODE Processing Pipeline 6f239c3086416714dc4cd4dc95d8cbae https://www.encodeproject.org/files/ENCFF095YRX/@@download/ENCFF095YRX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF295QBQ bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVQ, ENCFF002BVU, ENCFF018NEO 1411320762 ENCODE Processing Pipeline 0d4647faba78a1faab06faf8d64de40d https://www.encodeproject.org/files/ENCFF295QBQ/@@download/ENCFF295QBQ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF510WLW bam alignments ENCSR311TLE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVY, ENCFF018NEO 1729731973 ENCODE Processing Pipeline 17e14a7cf895deab98f94282f68df33d https://www.encodeproject.org/files/ENCFF510WLW/@@download/ENCFF510WLW.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF621ESF bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF091BHO, ENCFF118HZT 1494264265 ENCODE Processing Pipeline dbfb86eeb853c65f0ee90a956f98fe48 https://www.encodeproject.org/files/ENCFF621ESF/@@download/ENCFF621ESF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF328ITH bam alignments ENCSR549RVJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF327BUW 1218649586 ENCODE Processing Pipeline 9e7e874e7f4a90e6c094c9055f9c7b9d https://www.encodeproject.org/files/ENCFF328ITH/@@download/ENCFF328ITH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF297ZBU bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF128OTX, ENCFF861GZT 2292810269 ENCODE Processing Pipeline d70a5efaf4bd43f226ff78f0f284c08a https://www.encodeproject.org/files/ENCFF297ZBU/@@download/ENCFF297ZBU.bam mm10 released sequencing runs labeled as technical replicates ENCFF434XWY bam alignments ENCSR243JOL ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF115BHE 2421421526 ENCODE Processing Pipeline f5fceee2c9ab083170876ea2a016e44b https://www.encodeproject.org/files/ENCFF434XWY/@@download/ENCFF434XWY.bam mm10 released sequencing runs labeled as technical replicates ENCFF468WHG bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF945MPF 2072899032 ENCODE Processing Pipeline a5a89aa1337375d07015a4b2e9ff27be https://www.encodeproject.org/files/ENCFF468WHG/@@download/ENCFF468WHG.bam mm10 released ENCFF563JOE bam alignments ENCSR157IVC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF031YMD 2191292882 ENCODE Processing Pipeline 04e3c2186153b2defacf5aa492358494 https://www.encodeproject.org/files/ENCFF563JOE/@@download/ENCFF563JOE.bam mm10 released ENCFF714OZM bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF314DBV 2095914514 ENCODE Processing Pipeline af14a6a6a345206045f0622c99041d8a https://www.encodeproject.org/files/ENCFF714OZM/@@download/ENCFF714OZM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF186QGN bam alignments ENCSR241BSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF534QLB 1814686926 ENCODE Processing Pipeline aacdcf3ef9d4c7d8b23e4b7e851adfe9 https://www.encodeproject.org/files/ENCFF186QGN/@@download/ENCFF186QGN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF037LKE bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF925WPN 1350803629 ENCODE Processing Pipeline 9ab28e43631996b8d19e72e8cdc499da https://www.encodeproject.org/files/ENCFF037LKE/@@download/ENCFF037LKE.bam mm10 released mild to moderate bottlenecking ENCFF839QUF bam alignments ENCSR252ONR ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF859APS 1461578590 ENCODE Processing Pipeline 037851e1ce4a81cb7bbe9409b4a579ac https://www.encodeproject.org/files/ENCFF839QUF/@@download/ENCFF839QUF.bam mm10 released mild to moderate bottlenecking ENCFF252XMF bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF117TGO 1153335944 ENCODE Processing Pipeline 623e16b669fe05ff3efcaf7d0459bf62 https://www.encodeproject.org/files/ENCFF252XMF/@@download/ENCFF252XMF.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF332ONP bam alignments ENCSR782SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF139CEY 1283000342 ENCODE Processing Pipeline 397361a1ca0ccd970855ed3709e426d4 https://www.encodeproject.org/files/ENCFF332ONP/@@download/ENCFF332ONP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF397CLT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 742227762 ENCODE Processing Pipeline 229f2fcdca6c662d439ac21aa6c592a9 https://www.encodeproject.org/files/ENCFF397CLT/@@download/ENCFF397CLT.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF715HFI bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 678795791 ENCODE Processing Pipeline c3a09cd2667f0c242c0a825eb861d734 https://www.encodeproject.org/files/ENCFF715HFI/@@download/ENCFF715HFI.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF221WFK bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESQ, ENCFF018NEO, ENCFF353DPR 1219524709 ENCODE Processing Pipeline 597a4d5b713f5c7755a14570523e661a https://www.encodeproject.org/files/ENCFF221WFK/@@download/ENCFF221WFK.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF391CLH bam alignments ENCSR883ASH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESP, ENCFF018NEO, ENCFF132XEY 1192732387 ENCODE Processing Pipeline 119ce4fcc17ce0de19173b8268c44ee5 https://www.encodeproject.org/files/ENCFF391CLH/@@download/ENCFF391CLH.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF147QOO bam alignments ENCSR862ZBY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF691VJX 1076315704 ENCODE Processing Pipeline 7d65068607ee5bd493dcadbeadb5858c https://www.encodeproject.org/files/ENCFF147QOO/@@download/ENCFF147QOO.bam mm10 released low read depth ENCFF623EXR bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRV, ENCFF002DRX, ENCFF018NEO 1047641119 ENCODE Processing Pipeline 6e9345192419eb913bb60df0b9747922 https://www.encodeproject.org/files/ENCFF623EXR/@@download/ENCFF623EXR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF084AGQ bam alignments ENCSR223FDX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRY, ENCFF002DSA, ENCFF018NEO 983353192 ENCODE Processing Pipeline e4a8e8c58760d76f79bbacfb14176863 https://www.encodeproject.org/files/ENCFF084AGQ/@@download/ENCFF084AGQ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF177CGR bam alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF163FCZ 2085117836 ENCODE Processing Pipeline 992cc50ac455df78c7b1d40e7593ab42 https://www.encodeproject.org/files/ENCFF177CGR/@@download/ENCFF177CGR.bam mm10 released mild to moderate bottlenecking ENCFF035OEC bam alignments ENCSR302HOJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF674ZQG 2008129707 ENCODE Processing Pipeline 56b6d414622fcdc0027e8dd33230d150 https://www.encodeproject.org/files/ENCFF035OEC/@@download/ENCFF035OEC.bam mm10 released mild to moderate bottlenecking ENCFF003PZM bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF058MRV, ENCFF699BCV 3288832021 ENCODE Processing Pipeline 8f3d0f92cc04ed739bd1275108d0da55 https://www.encodeproject.org/files/ENCFF003PZM/@@download/ENCFF003PZM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF518UCO bam alignments ENCSR231CHC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF081NMJ, ENCFF168IVX 2983107137 ENCODE Processing Pipeline c9de8af67289bd578d1dcc2f68d4a906 https://www.encodeproject.org/files/ENCFF518UCO/@@download/ENCFF518UCO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF700LJU bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF121MJX 2103713843 ENCODE Processing Pipeline da8fa2bbfa306820bf3e128d2e3dbdce https://www.encodeproject.org/files/ENCFF700LJU/@@download/ENCFF700LJU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF003LEB bam alignments ENCSR257GTR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF690CSC 2113294903 ENCODE Processing Pipeline f104c0ac6c890ffc19527aa62020ffda https://www.encodeproject.org/files/ENCFF003LEB/@@download/ENCFF003LEB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF426YCD bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF970YIV 1264028408 ENCODE Processing Pipeline d693398443b5a46761d7f675d835ad31 https://www.encodeproject.org/files/ENCFF426YCD/@@download/ENCFF426YCD.bam mm10 released mild to moderate bottlenecking ENCFF817IEO bam alignments ENCSR316AZB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF188QTH 2119613832 ENCODE Processing Pipeline 5c0d355d908eb5dd6b9012494435950f https://www.encodeproject.org/files/ENCFF817IEO/@@download/ENCFF817IEO.bam mm10 released mild to moderate bottlenecking ENCFF106QPA bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF018NEO, ENCFF687XUV 1866953731 ENCODE Processing Pipeline f8b72d0209e27fc6dfc75034c7caa0f6 https://www.encodeproject.org/files/ENCFF106QPA/@@download/ENCFF106QPA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF825HOE bam alignments ENCSR075SNV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF018NEO, ENCFF418QGR, ENCFF641USQ 2686026887 ENCODE Processing Pipeline dca3544825ec8b484ee09b9d6934451d https://www.encodeproject.org/files/ENCFF825HOE/@@download/ENCFF825HOE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF375GZK bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOI, ENCFF018NEO 842426146 ENCODE Processing Pipeline f08e85884d8bac36bbbfc7631114de8a https://www.encodeproject.org/files/ENCFF375GZK/@@download/ENCFF375GZK.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF945JAC bam alignments ENCSR511LWL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOO, ENCFF018NEO 826465169 ENCODE Processing Pipeline 100e2c2d896d0c39a4cae40dbf75d855 https://www.encodeproject.org/files/ENCFF945JAC/@@download/ENCFF945JAC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF517AMP bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002BWF, ENCFF018NEO 992398165 ENCODE Processing Pipeline f928975f2d64fdd2b2d78ef02856a975 https://www.encodeproject.org/files/ENCFF517AMP/@@download/ENCFF517AMP.bam mm10 released low read length ENCFF714JCT bam alignments ENCSR093DWU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002BWH, ENCFF018NEO 1092978746 ENCODE Processing Pipeline fe820674fd206d65cb4dcc4cd7a6f452 https://www.encodeproject.org/files/ENCFF714JCT/@@download/ENCFF714JCT.bam mm10 released low read length ENCFF073PPI bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUW, ENCFF002BUY, ENCFF018NEO, ENCFF243ZWK 1063864185 ENCODE Processing Pipeline 1aed3a55ae2f3e4c3442d94bf600a02d https://www.encodeproject.org/files/ENCFF073PPI/@@download/ENCFF073PPI.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF460YML bam alignments ENCSR027DMG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF411PVL 1774774256 ENCODE Processing Pipeline b2486cbbe574da0b65033ea546c81049 https://www.encodeproject.org/files/ENCFF460YML/@@download/ENCFF460YML.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF951ALL bam alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NTD, ENCFF018NEO 690243677 ENCODE Processing Pipeline 2a47875834f2b8f44b1fe34c13a1c8ee https://www.encodeproject.org/files/ENCFF951ALL/@@download/ENCFF951ALL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF893WLX bam alignments ENCSR000ETD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day rat-IgG-control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NTF, ENCFF018NEO 695145042 ENCODE Processing Pipeline 52da6a05e982ff36f9a8a48bd2cbe51e https://www.encodeproject.org/files/ENCFF893WLX/@@download/ENCFF893WLX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF494JER bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWN, ENCFF018NEO 380039323 ENCODE Processing Pipeline cf374ed8816fb9a450013536e3a708a8 https://www.encodeproject.org/files/ENCFF494JER/@@download/ENCFF494JER.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF681VQK bam alignments ENCSR000CCW ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWU, ENCFF018NEO 805935842 ENCODE Processing Pipeline 8b5baea5b5b41bbc00ff403ad0d076c4 https://www.encodeproject.org/files/ENCFF681VQK/@@download/ENCFF681VQK.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth control insufficient read depth ENCFF663MJH bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALN, ENCFF018NEO 680871422 ENCODE Processing Pipeline c575ef3c210d53fbbb744b2914e923d6 https://www.encodeproject.org/files/ENCFF663MJH/@@download/ENCFF663MJH.bam mm10 released low read length, control low read depth, low read depth ENCFF623FDQ bam alignments ENCSR076MXH ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALM, ENCFF018NEO 802448458 ENCODE Processing Pipeline 04a7f313b5467e7d3fcc796a13bcbe91 https://www.encodeproject.org/files/ENCFF623FDQ/@@download/ENCFF623FDQ.bam mm10 released low read length, control low read depth, low read depth ENCFF538ZCX bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKP, ENCFF018NEO 982188490 ENCODE Processing Pipeline eabee6b5341cca131068b9481083bb53 https://www.encodeproject.org/files/ENCFF538ZCX/@@download/ENCFF538ZCX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF228SYP bam alignments ENCSR264TXI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKO, ENCFF018NEO 982026235 ENCODE Processing Pipeline dd12fb329e48555336453b5a6415f8fc https://www.encodeproject.org/files/ENCFF228SYP/@@download/ENCFF228SYP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF250WTO bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYG, ENCFF018NEO 506642894 ENCODE Processing Pipeline 7f402b825d01a904be02b34477694dac https://www.encodeproject.org/files/ENCFF250WTO/@@download/ENCFF250WTO.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF858GPK bam alignments ENCSR000CAH ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYF, ENCFF018NEO 509601646 ENCODE Processing Pipeline 5b59873efba8b34f230920a61e980b98 https://www.encodeproject.org/files/ENCFF858GPK/@@download/ENCFF858GPK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth control insufficient read depth ENCFF399MAG bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF214HLL, ENCFF751HMJ 2365247636 ENCODE Processing Pipeline a14e56eb4170ffcf445dd9652308d694 https://www.encodeproject.org/files/ENCFF399MAG/@@download/ENCFF399MAG.bam mm10 released sequencing runs labeled as technical replicates ENCFF609XDL bam alignments ENCSR445HBA ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF789POT, ENCFF884YRX 2178643978 ENCODE Processing Pipeline 7c1b2609045572624000d39a94666811 https://www.encodeproject.org/files/ENCFF609XDL/@@download/ENCFF609XDL.bam mm10 released sequencing runs labeled as technical replicates ENCFF586VMG bam alignments ENCSR000AII ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus E2F4-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDX, ENCFF018NEO 460477938 ENCODE Processing Pipeline a6206673547f0f98662cf2a3b604974e https://www.encodeproject.org/files/ENCFF586VMG/@@download/ENCFF586VMG.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF544ETA bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTB, ENCFF002DTC, ENCFF018NEO, ENCFF446CJG 1126799897 ENCODE Processing Pipeline b1c93f3a8873e9cd1d7bade83346b9fa https://www.encodeproject.org/files/ENCFF544ETA/@@download/ENCFF544ETA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF873ILA bam alignments ENCSR535NVF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTD, ENCFF002DTE, ENCFF018NEO, ENCFF319LUM 1116082056 ENCODE Processing Pipeline 9132ebcacef11d4fd4574c09fdadbe3c https://www.encodeproject.org/files/ENCFF873ILA/@@download/ENCFF873ILA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF794RXP bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMW, ENCFF018NEO 792602017 ENCODE Processing Pipeline aadc71e157a02660bdb39ebdc5a2430f https://www.encodeproject.org/files/ENCFF794RXP/@@download/ENCFF794RXP.bam mm10 released low read length, low read depth ENCFF643WML bam alignments ENCSR839WFP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMX, ENCFF018NEO 772519615 ENCODE Processing Pipeline 7ef37e3e4163bee0f045cce8098c998e https://www.encodeproject.org/files/ENCFF643WML/@@download/ENCFF643WML.bam mm10 released low read length, low read depth ENCFF735RCE bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 3 50 ENCFF001IFI, ENCFF018NEO 621623211 ENCODE Processing Pipeline ebea59c53b106e731fd1d7c9fd85a565 https://www.encodeproject.org/files/ENCFF735RCE/@@download/ENCFF735RCE.bam mm10 released low read depth ENCFF266PHH bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 2 50 ENCFF001IFC, ENCFF018NEO 955557073 ENCODE Processing Pipeline 5b8eecf55eec5450c7c00e258969be29 https://www.encodeproject.org/files/ENCFF266PHH/@@download/ENCFF266PHH.bam mm10 released low read depth ENCFF875IDP bam alignments ENCSR000AJN ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-28 ENCODE 1 50 ENCFF001IFD, ENCFF018NEO 691603532 ENCODE Processing Pipeline a47aaeb77ac8f393ca8fcba9628ddab8 https://www.encodeproject.org/files/ENCFF875IDP/@@download/ENCFF875IDP.bam mm10 released low read depth ENCFF594AGF bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF433HZI 1637356203 ENCODE Processing Pipeline 3bd6004bf8849a5620652a078ad7d4d4 https://www.encodeproject.org/files/ENCFF594AGF/@@download/ENCFF594AGF.bam mm10 released ENCFF731PUV bam alignments ENCSR634GFJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF206AIB 1341570800 ENCODE Processing Pipeline 2c92ab68935067429684382c4006d889 https://www.encodeproject.org/files/ENCFF731PUV/@@download/ENCFF731PUV.bam mm10 released ENCFF076JPB bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSX, ENCFF018NEO 864608129 ENCODE Processing Pipeline 038003e5debf4fc3b0c11a096bd9e882 https://www.encodeproject.org/files/ENCFF076JPB/@@download/ENCFF076JPB.bam mm10 released low read length, control low read depth, low read depth ENCFF543YTQ bam alignments ENCSR948RYN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSY, ENCFF018NEO 779927579 ENCODE Processing Pipeline 43f418b33b2dcbf53fc3a15b9f1ee949 https://www.encodeproject.org/files/ENCFF543YTQ/@@download/ENCFF543YTQ.bam mm10 released low read length, control low read depth, low read depth ENCFF239NFK bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 555939549 ENCODE Processing Pipeline 8af9e7bb063d487bba993ebf75ee0fd4 https://www.encodeproject.org/files/ENCFF239NFK/@@download/ENCFF239NFK.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF127ZPW bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 626469364 ENCODE Processing Pipeline 457d60da20e2e91ad91639f1dc0a146b https://www.encodeproject.org/files/ENCFF127ZPW/@@download/ENCFF127ZPW.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF468BIZ bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUW, ENCFF018NEO 458059422 ENCODE Processing Pipeline 26987a2fd4a3d87f67c12bf10672f7b4 https://www.encodeproject.org/files/ENCFF468BIZ/@@download/ENCFF468BIZ.bam mm10 released low read length, low read depth ENCFF437LOC bam alignments ENCSR081UQY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUV, ENCFF018NEO 637169204 ENCODE Processing Pipeline 322d064512a375573b7cfe64526c904c https://www.encodeproject.org/files/ENCFF437LOC/@@download/ENCFF437LOC.bam mm10 released low read length, low read depth ENCFF633TGS bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANR, ENCFF018NEO 927938162 ENCODE Processing Pipeline 5ef97b956b240aa7f8ef69df877cd2c3 https://www.encodeproject.org/files/ENCFF633TGS/@@download/ENCFF633TGS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF851MGX bam alignments ENCSR128ZCB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANS, ENCFF018NEO 1184651798 ENCODE Processing Pipeline 74b9b07b6a9d7f67e297d3eff522ce52 https://www.encodeproject.org/files/ENCFF851MGX/@@download/ENCFF851MGX.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF536ZMQ bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF194BWG 1557388662 ENCODE Processing Pipeline 27b8a9a789b0d142c55cfd45895b712c https://www.encodeproject.org/files/ENCFF536ZMQ/@@download/ENCFF536ZMQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF148HFT bam alignments ENCSR244ASF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF220WCE 1604014525 ENCODE Processing Pipeline 8bda449a7ab465f8de64e63beef5a087 https://www.encodeproject.org/files/ENCFF148HFT/@@download/ENCFF148HFT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF092FTW bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 2 36 ENCFF001ZSH, ENCFF018NEO, ENCFF888GKB 1166990505 ENCODE Processing Pipeline 71c59c8d281a889fbd0c8a0621ebc0e2 https://www.encodeproject.org/files/ENCFF092FTW/@@download/ENCFF092FTW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF432OEF bam alignments ENCSR526JRI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-10-14 ENCODE 1 36 ENCFF001ZSG, ENCFF018NEO 1095723834 ENCODE Processing Pipeline e63c34de8ac0ff9408000fc6547212f1 https://www.encodeproject.org/files/ENCFF432OEF/@@download/ENCFF432OEF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF887UBK bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MMU, ENCFF018NEO 1388027027 ENCODE Processing Pipeline a5bb454b5781e9d3459dbd88598e6674 https://www.encodeproject.org/files/ENCFF887UBK/@@download/ENCFF887UBK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF381DCK bam alignments ENCSR000DIK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MMW, ENCFF018NEO 1108781777 ENCODE Processing Pipeline 2f4460f04253419084c1b1bed196f989 https://www.encodeproject.org/files/ENCFF381DCK/@@download/ENCFF381DCK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth for broad peaks control ENCFF387WDC bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF441PKE 2143696858 ENCODE Processing Pipeline 749e68951a0af7b99ca34b234de4e406 https://www.encodeproject.org/files/ENCFF387WDC/@@download/ENCFF387WDC.bam mm10 released sequencing runs labeled as technical replicates ENCFF570IJH bam alignments ENCSR218CUA ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF517ODV, ENCFF961WKK 2262820796 ENCODE Processing Pipeline 829e9c5b6131861bfbfed56720f72ff9 https://www.encodeproject.org/files/ENCFF570IJH/@@download/ENCFF570IJH.bam mm10 released sequencing runs labeled as technical replicates ENCFF375RZM bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIC, ENCFF018NEO 1453086353 ENCODE Processing Pipeline 3ce68309d5dd86a31a92fda857ad7111 https://www.encodeproject.org/files/ENCFF375RZM/@@download/ENCFF375RZM.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF144DAE bam alignments ENCSR670YXP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AID, ENCFF018NEO 1854006804 ENCODE Processing Pipeline 23500f9975c8ab145a1ada5d239fca30 https://www.encodeproject.org/files/ENCFF144DAE/@@download/ENCFF144DAE.bam mm10 released low read depth insufficient read depth, control insufficient read depth ENCFF026EIK bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 1 50 ENCFF018NEO, ENCFF955GVE 1258665998 ENCODE Processing Pipeline acf1531203a36a799ece58aecca55abd https://www.encodeproject.org/files/ENCFF026EIK/@@download/ENCFF026EIK.bam mm10 released mild to moderate bottlenecking ENCFF271FFU bam alignments ENCSR765UOU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-05-06 ENCODE 2 50 ENCFF018NEO, ENCFF114FLE 1806591037 ENCODE Processing Pipeline 8b72cbcd0c74b5a870d09c6ccaa2150d https://www.encodeproject.org/files/ENCFF271FFU/@@download/ENCFF271FFU.bam mm10 released mild to moderate bottlenecking ENCFF364XGA bam alignments ENCSR000AIF ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGT, ENCFF001IGU, ENCFF018NEO 166271651 ENCODE Processing Pipeline 3762a962f3ac3f4724d0b3fc38c5853b https://www.encodeproject.org/files/ENCFF364XGA/@@download/ENCFF364XGA.bam mm10 released insufficient read length, control insufficient read depth extremely low read depth ENCFF676ASY bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF470QWO 1532303635 ENCODE Processing Pipeline d4151c5245bd351a882e58773a5831b8 https://www.encodeproject.org/files/ENCFF676ASY/@@download/ENCFF676ASY.bam mm10 released mild to moderate bottlenecking ENCFF471MKR bam alignments ENCSR527EUE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF232IYQ 1396783768 ENCODE Processing Pipeline 316f25e90296564b7ae1f8b2ecf079d9 https://www.encodeproject.org/files/ENCFF471MKR/@@download/ENCFF471MKR.bam mm10 released mild to moderate bottlenecking ENCFF270SEO bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF088MXW, ENCFF129BRG, ENCFF195VIV 2026281347 ENCODE Processing Pipeline 005fcd887753024e21b49c1d7c795c1f https://www.encodeproject.org/files/ENCFF270SEO/@@download/ENCFF270SEO.bam mm10 released sequencing runs labeled as technical replicates ENCFF652BTE bam alignments ENCSR659EZI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF562YFW, ENCFF807YNF 2004797241 ENCODE Processing Pipeline a0852975c4c7c934c224a9f153b153e8 https://www.encodeproject.org/files/ENCFF652BTE/@@download/ENCFF652BTE.bam mm10 released sequencing runs labeled as technical replicates ENCFF736NVD bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFC, ENCFF018NEO 887993802 ENCODE Processing Pipeline dc3d37309a12f44c4fd7ccd2655e3d36 https://www.encodeproject.org/files/ENCFF736NVD/@@download/ENCFF736NVD.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF769FGA bam alignments ENCSR316CNR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFG, ENCFF018NEO 859618582 ENCODE Processing Pipeline 5e2cffda19dbb2704631059b4c36e066 https://www.encodeproject.org/files/ENCFF769FGA/@@download/ENCFF769FGA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF365YFQ bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF382TPS, ENCFF768AVK 2617205655 ENCODE Processing Pipeline fa11fef287f7f04e08aaed98e2034a27 https://www.encodeproject.org/files/ENCFF365YFQ/@@download/ENCFF365YFQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF846QYV bam alignments ENCSR826TJQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF756IXU 3229741913 ENCODE Processing Pipeline 269033c0232a4565db66a1dd65a2489b https://www.encodeproject.org/files/ENCFF846QYV/@@download/ENCFF846QYV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF161FKJ bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF605YBP 1299590484 ENCODE Processing Pipeline 2cb3b3b7e6064431c3b76926baefafcd https://www.encodeproject.org/files/ENCFF161FKJ/@@download/ENCFF161FKJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF973RNO bam alignments ENCSR517UZA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673XJI 1417072900 ENCODE Processing Pipeline cb15a9a2ab55f176a80cb55301254634 https://www.encodeproject.org/files/ENCFF973RNO/@@download/ENCFF973RNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF182WFB bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APJ, ENCFF018NEO 901833398 ENCODE Processing Pipeline e6a8f14f8bf4ab47e9cc3da9865dfdcb https://www.encodeproject.org/files/ENCFF182WFB/@@download/ENCFF182WFB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF871KGD bam alignments ENCSR028VCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APK, ENCFF018NEO 882217941 ENCODE Processing Pipeline d985003bc0add5adf28450d59e11fcf3 https://www.encodeproject.org/files/ENCFF871KGD/@@download/ENCFF871KGD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths severe bottlenecking, poor library complexity ENCFF289DEQ bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGK, ENCFF018NEO 916713506 ENCODE Processing Pipeline 0cd9c54c7650077c1b3310d7bb2b23f7 https://www.encodeproject.org/files/ENCFF289DEQ/@@download/ENCFF289DEQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF087TDB bam alignments ENCSR765SJF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGJ, ENCFF018NEO, ENCFF466WCX 1077406172 ENCODE Processing Pipeline 310166a56d40485a302d1a74c5dda667 https://www.encodeproject.org/files/ENCFF087TDB/@@download/ENCFF087TDB.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF755BPV bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF082LJL 1991030784 ENCODE Processing Pipeline c53642feaca0cd90e4c495f278c004a8 https://www.encodeproject.org/files/ENCFF755BPV/@@download/ENCFF755BPV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF911RYA bam alignments ENCSR022KDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF212KTV 1521149314 ENCODE Processing Pipeline e673ef246a171ff98d4718ab7b2dc550 https://www.encodeproject.org/files/ENCFF911RYA/@@download/ENCFF911RYA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF293UCG bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF105XGM 1673024518 ENCODE Processing Pipeline 4c49080c1e15225fdaa1acf446d27010 https://www.encodeproject.org/files/ENCFF293UCG/@@download/ENCFF293UCG.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF777XFH bam alignments ENCSR149GYK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF874ADM 1556260150 ENCODE Processing Pipeline b9871d2d425c57a6d2c23253c8eaa117 https://www.encodeproject.org/files/ENCFF777XFH/@@download/ENCFF777XFH.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF663HQH bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXK, ENCFF018NEO 1026239380 ENCODE Processing Pipeline 46120b51db9401b49fbc8bcde893383b https://www.encodeproject.org/files/ENCFF663HQH/@@download/ENCFF663HQH.bam mm10 released low read length ENCFF447GAC bam alignments ENCSR684UWM ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXJ, ENCFF018NEO 1070710446 ENCODE Processing Pipeline 7ebb1506aea29f7ddfe4d0677fd67316 https://www.encodeproject.org/files/ENCFF447GAC/@@download/ENCFF447GAC.bam mm10 released low read length ENCFF911DLL bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWG, ENCFF018NEO 1125670200 ENCODE Processing Pipeline 6b23d06e8b23eb5d305ce31a9086c274 https://www.encodeproject.org/files/ENCFF911DLL/@@download/ENCFF911DLL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF649BJN bam alignments ENCSR639DND ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWI, ENCFF018NEO 1222357315 ENCODE Processing Pipeline 633e3bc01077d05de15d429514e275e1 https://www.encodeproject.org/files/ENCFF649BJN/@@download/ENCFF649BJN.bam mm10 released low read length, mild to moderate bottlenecking ENCFF108QHS bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAU, ENCFF018NEO 2340785237 ENCODE Processing Pipeline 8904e54d087ccb21b6646e36d9a3e150 https://www.encodeproject.org/files/ENCFF108QHS/@@download/ENCFF108QHS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF716XGF bam alignments ENCSR000DHV ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAV, ENCFF018NEO 3266593029 ENCODE Processing Pipeline bc30b433213557a205b95e5329766a2e https://www.encodeproject.org/files/ENCFF716XGF/@@download/ENCFF716XGF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF551NRH bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF086BUY 3356388027 ENCODE Processing Pipeline d0e697425f2ff45e623d43066adfd8d1 https://www.encodeproject.org/files/ENCFF551NRH/@@download/ENCFF551NRH.bam mm10 released inconsistent platforms ENCFF924YFS bam alignments ENCSR875KRK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF482TKQ 2988681993 ENCODE Processing Pipeline 0bc12c14d5f8cc2bfb490884236370a5 https://www.encodeproject.org/files/ENCFF924YFS/@@download/ENCFF924YFS.bam mm10 released inconsistent platforms ENCFF676FCR bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALZ, ENCFF018NEO 790774223 ENCODE Processing Pipeline f2dc477af1f82c1e6f56df2bf633ec3d https://www.encodeproject.org/files/ENCFF676FCR/@@download/ENCFF676FCR.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF505WSS bam alignments ENCSR059LYY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALY, ENCFF018NEO 703235335 ENCODE Processing Pipeline 0eec10897a73a11a4087e5c924f21ccc https://www.encodeproject.org/files/ENCFF505WSS/@@download/ENCFF505WSS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF118IWP bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHJ, ENCFF018NEO, ENCFF087WWR 1100740170 ENCODE Processing Pipeline 69842bc7f41d07c755ddbe0102e1d6c1 https://www.encodeproject.org/files/ENCFF118IWP/@@download/ENCFF118IWP.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF619ZRW bam alignments ENCSR340ROY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHI, ENCFF018NEO, ENCFF517FBP 929466023 ENCODE Processing Pipeline 5fc407f171422663743b41c82c410d2a https://www.encodeproject.org/files/ENCFF619ZRW/@@download/ENCFF619ZRW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF403BNE bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSR, ENCFF002DST, ENCFF002DSX, ENCFF018NEO 1319482325 ENCODE Processing Pipeline d91d2835c313df800c5777ef5c5ddaaa https://www.encodeproject.org/files/ENCFF403BNE/@@download/ENCFF403BNE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF903JRN bam alignments ENCSR365CUP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSS, ENCFF002DSU, ENCFF018NEO 1488349413 ENCODE Processing Pipeline 749bb3c9b87f8d0b94e1a79d00eca955 https://www.encodeproject.org/files/ENCFF903JRN/@@download/ENCFF903JRN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF913IOZ bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF831DFS, ENCFF934WUF 2802037971 ENCODE Processing Pipeline 3681ed22bde3caf68f4c335b26f925c7 https://www.encodeproject.org/files/ENCFF913IOZ/@@download/ENCFF913IOZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF969VKD bam alignments ENCSR008WOQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF660SXJ, ENCFF944LSE 3016429388 ENCODE Processing Pipeline 194a2e9eaa405e0a16978e6ea98e6cfa https://www.encodeproject.org/files/ENCFF969VKD/@@download/ENCFF969VKD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF005KBM bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSM, ENCFF018NEO 726437713 ENCODE Processing Pipeline 867c76cfff9239caa9ab99cbc7f3f02b https://www.encodeproject.org/files/ENCFF005KBM/@@download/ENCFF005KBM.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF954OIP bam alignments ENCSR751HEG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSP, ENCFF018NEO 1064099555 ENCODE Processing Pipeline db3b998352a08d31358f5bda755231cd https://www.encodeproject.org/files/ENCFF954OIP/@@download/ENCFF954OIP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth ENCFF939UPO bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGM, ENCFF018NEO, ENCFF283XLO 1162490137 ENCODE Processing Pipeline caddc9f886f828021062500a61616465 https://www.encodeproject.org/files/ENCFF939UPO/@@download/ENCFF939UPO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595ECC bam alignments ENCSR064DGY ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGU, ENCFF018NEO 1116788365 ENCODE Processing Pipeline 0768f7b6ce6ff9219999d2aa0eaa25e7 https://www.encodeproject.org/files/ENCFF595ECC/@@download/ENCFF595ECC.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF425GXY bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTP, ENCFF018NEO, ENCFF537APL 1190003754 ENCODE Processing Pipeline 290c35206f1659437af62976c3480f18 https://www.encodeproject.org/files/ENCFF425GXY/@@download/ENCFF425GXY.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF830COJ bam alignments ENCSR085EYQ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTO, ENCFF018NEO, ENCFF593ZTR 1231389346 ENCODE Processing Pipeline 2da24e786d2fe360ad76888e75542ba2 https://www.encodeproject.org/files/ENCFF830COJ/@@download/ENCFF830COJ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF886GLK bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVO, ENCFF002BVR, ENCFF018NEO 1244379623 ENCODE Processing Pipeline 61539b9f582d3a12ed5da1aa5ebd7d6e https://www.encodeproject.org/files/ENCFF886GLK/@@download/ENCFF886GLK.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF890VUY bam alignments ENCSR299NCJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVX, ENCFF018NEO 1168328952 ENCODE Processing Pipeline 9b14c171b75fb9aece18d1b1a0b8af25 https://www.encodeproject.org/files/ENCFF890VUY/@@download/ENCFF890VUY.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF594JSE bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF448GBA 1533697212 ENCODE Processing Pipeline 20d023a3597ec550b5b51b2200ed7e14 https://www.encodeproject.org/files/ENCFF594JSE/@@download/ENCFF594JSE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF782GWE bam alignments ENCSR650UAC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF249OHU 1908326064 ENCODE Processing Pipeline bd844d6f16b0f83d81857e10cb8b9693 https://www.encodeproject.org/files/ENCFF782GWE/@@download/ENCFF782GWE.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF962IPZ bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547KWQ 2628513867 ENCODE Processing Pipeline c052ecc3f1d28ad900d5af93670f44ae https://www.encodeproject.org/files/ENCFF962IPZ/@@download/ENCFF962IPZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF513SBJ bam alignments ENCSR295ZLV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF638IQR 2554133200 ENCODE Processing Pipeline e033d75542fd7570d81a481daa42b4a3 https://www.encodeproject.org/files/ENCFF513SBJ/@@download/ENCFF513SBJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF188DLK bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTG, ENCFF018NEO 1077951575 ENCODE Processing Pipeline 4578e5d6688bcc7a88925770df96086a https://www.encodeproject.org/files/ENCFF188DLK/@@download/ENCFF188DLK.bam mm10 released low read length, mild to moderate bottlenecking ENCFF641CMD bam alignments ENCSR547PLI ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTD, ENCFF018NEO 971258916 ENCODE Processing Pipeline e0890bbc7870a0346f36f2c9a68c0006 https://www.encodeproject.org/files/ENCFF641CMD/@@download/ENCFF641CMD.bam mm10 released low read length, mild to moderate bottlenecking ENCFF809QLS bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF060JQO 950940290 ENCODE Processing Pipeline 4f8df77abc28986d243e9815e37b2ddd https://www.encodeproject.org/files/ENCFF809QLS/@@download/ENCFF809QLS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF470OWJ bam alignments ENCSR629AFL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF366GOC 1306462556 ENCODE Processing Pipeline 7dd25b0e1fdbd0e0f977619cd3e5f599 https://www.encodeproject.org/files/ENCFF470OWJ/@@download/ENCFF470OWJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF198HVF bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF326UOO 2285121757 ENCODE Processing Pipeline e21ef48752ef5e1856679dd1934fa57e https://www.encodeproject.org/files/ENCFF198HVF/@@download/ENCFF198HVF.bam mm10 released mild to moderate bottlenecking ENCFF092TYS bam alignments ENCSR297CHD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF811HJY 2147486041 ENCODE Processing Pipeline e1dd7dabda231f0a72ce6fb782f9bd81 https://www.encodeproject.org/files/ENCFF092TYS/@@download/ENCFF092TYS.bam mm10 released mild to moderate bottlenecking ENCFF361ECJ bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 540591748 ENCODE Processing Pipeline dd491191aaf972da8cb965427c8c1297 https://www.encodeproject.org/files/ENCFF361ECJ/@@download/ENCFF361ECJ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF853JQH bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 992373682 ENCODE Processing Pipeline 1116376e83a5920afb778509239059df https://www.encodeproject.org/files/ENCFF853JQH/@@download/ENCFF853JQH.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF504VVD bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 615637478 ENCODE Processing Pipeline 2decde58005fe65dc00f7181ffd512b7 https://www.encodeproject.org/files/ENCFF504VVD/@@download/ENCFF504VVD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF730KCK bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 611197160 ENCODE Processing Pipeline 7325815783e39cead9dedee37db26270 https://www.encodeproject.org/files/ENCFF730KCK/@@download/ENCFF730KCK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF161LUJ bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF321ECO 1442842555 ENCODE Processing Pipeline 403b9084d202bfeba1d2a391f6adaea7 https://www.encodeproject.org/files/ENCFF161LUJ/@@download/ENCFF161LUJ.bam mm10 released inconsistent platforms ENCFF822YJM bam alignments ENCSR098AHF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF264AEL 1306172698 ENCODE Processing Pipeline c8d2df6a8d6366ae9b0ed7fe288bc312 https://www.encodeproject.org/files/ENCFF822YJM/@@download/ENCFF822YJM.bam mm10 released inconsistent platforms ENCFF017WTH bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KCI, ENCFF018NEO 879577147 ENCODE Processing Pipeline 1756c24980e8c1a18f81cdf85d9c3062 https://www.encodeproject.org/files/ENCFF017WTH/@@download/ENCFF017WTH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF089REQ bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KCH, ENCFF018NEO 1043835355 ENCODE Processing Pipeline 69217ce6ded4d704add3a6b990272bf8 https://www.encodeproject.org/files/ENCFF089REQ/@@download/ENCFF089REQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF260OJF bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCI, ENCFF018NEO 681297756 ENCODE Processing Pipeline 9f8e7c36ddcac4630374a4759412ec41 https://www.encodeproject.org/files/ENCFF260OJF/@@download/ENCFF260OJF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF020THJ bam alignments ENCSR000CGG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCH, ENCFF018NEO 806541609 ENCODE Processing Pipeline 5a22e4dd63a3db00856ea4760bc4e735 https://www.encodeproject.org/files/ENCFF020THJ/@@download/ENCFF020THJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF967OXL bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF527DSY 1664379239 ENCODE Processing Pipeline fe94d03392975da42821da5f8b8d22a8 https://www.encodeproject.org/files/ENCFF967OXL/@@download/ENCFF967OXL.bam mm10 released mild to moderate bottlenecking ENCFF217WVV bam alignments ENCSR557SVH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF798YAA 1470988946 ENCODE Processing Pipeline dff251be77dfd322621849c830d36b6f https://www.encodeproject.org/files/ENCFF217WVV/@@download/ENCFF217WVV.bam mm10 released mild to moderate bottlenecking ENCFF437KKV bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTX, ENCFF018NEO 661942639 ENCODE Processing Pipeline 02a16df5c4f5c518c4529a7694d2a883 https://www.encodeproject.org/files/ENCFF437KKV/@@download/ENCFF437KKV.bam mm10 released low read length, low read depth ENCFF354JHH bam alignments ENCSR739DVM ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTY, ENCFF018NEO 720285372 ENCODE Processing Pipeline 86a913486a3c355530ce722ed0f1890d https://www.encodeproject.org/files/ENCFF354JHH/@@download/ENCFF354JHH.bam mm10 released low read length, low read depth ENCFF495ASM bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF387MCM 2593767919 ENCODE Processing Pipeline 05c6f2b4b093548df24444624f53274c https://www.encodeproject.org/files/ENCFF495ASM/@@download/ENCFF495ASM.bam mm10 released mild to moderate bottlenecking ENCFF052DEE bam alignments ENCSR442RYY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF550HHE 2531575394 ENCODE Processing Pipeline 2fb1f52419f46e74d9ea88ce62d1c6b5 https://www.encodeproject.org/files/ENCFF052DEE/@@download/ENCFF052DEE.bam mm10 released mild to moderate bottlenecking ENCFF415NQQ bam alignments ENCSR000DHA ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MPZ, ENCFF018NEO 1314652720 ENCODE Processing Pipeline 9106e82e784d1cfe2931995cc2285cf3 https://www.encodeproject.org/files/ENCFF415NQQ/@@download/ENCFF415NQQ.bam mm10 released low read length, inconsistent platforms ENCFF543FFM bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUE, ENCFF018NEO 592166485 ENCODE Processing Pipeline 4219afe175c87afe8e421b5795431465 https://www.encodeproject.org/files/ENCFF543FFM/@@download/ENCFF543FFM.bam mm10 released low read length, low read depth ENCFF705GWF bam alignments ENCSR592GQI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTZ, ENCFF018NEO 660866427 ENCODE Processing Pipeline 5e8c2f61c8b15ee6b157aeb85dd6b93a https://www.encodeproject.org/files/ENCFF705GWF/@@download/ENCFF705GWF.bam mm10 released low read length, low read depth ENCFF241LIF bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWU, ENCFF018NEO 1060530266 ENCODE Processing Pipeline 5c7691acf3901cf73d0f547f3abfc23a https://www.encodeproject.org/files/ENCFF241LIF/@@download/ENCFF241LIF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF352BZY bam alignments ENCSR129DIK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWS, ENCFF018NEO 969968512 ENCODE Processing Pipeline 6b550a0b580258eb6818bba236f098b1 https://www.encodeproject.org/files/ENCFF352BZY/@@download/ENCFF352BZY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF951GMQ bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIO, ENCFF018NEO 370975011 ENCODE Processing Pipeline 88309e602fc21251e8965c75bbb710d7 https://www.encodeproject.org/files/ENCFF951GMQ/@@download/ENCFF951GMQ.bam mm10 released low read length insufficient read depth ENCFF842YLI bam alignments ENCSR000CDN ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIU, ENCFF018NEO 316213662 ENCODE Processing Pipeline 14d4eb6d99bc489f97cef069bcca94c0 https://www.encodeproject.org/files/ENCFF842YLI/@@download/ENCFF842YLI.bam mm10 released low read length insufficient read depth ENCFF449SWA bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 2 50 ENCFF018NEO, ENCFF688PRB 1253195405 ENCODE Processing Pipeline c61bbfffd31ec73e3bbaf50f27a4a5d9 https://www.encodeproject.org/files/ENCFF449SWA/@@download/ENCFF449SWA.bam mm10 released inconsistent platforms ENCFF159LUU bam alignments ENCSR191XHV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-23 ENCODE 1 50 ENCFF018NEO, ENCFF216RBU 1418905182 ENCODE Processing Pipeline 22bd0a22dc5f6fa18f34dd440de84e5e https://www.encodeproject.org/files/ENCFF159LUU/@@download/ENCFF159LUU.bam mm10 released inconsistent platforms ENCFF977IBX bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF409MDS, ENCFF852SEP 3010432813 ENCODE Processing Pipeline f4be7934deb4fcf04681499d288f4d98 https://www.encodeproject.org/files/ENCFF977IBX/@@download/ENCFF977IBX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF139UWI bam alignments ENCSR740DYF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF076CNP, ENCFF494YOF 3162184744 ENCODE Processing Pipeline f81934af8b9a170cbae92e89cc9bbd61 https://www.encodeproject.org/files/ENCFF139UWI/@@download/ENCFF139UWI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF325ROD bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF683ENW 1533924159 ENCODE Processing Pipeline ca1ef491829f7b639d32922154676b07 https://www.encodeproject.org/files/ENCFF325ROD/@@download/ENCFF325ROD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF379RFF bam alignments ENCSR985UTP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF517BQD 1654106083 ENCODE Processing Pipeline 2fe7d4e3531d21850773bb780a1da2f6 https://www.encodeproject.org/files/ENCFF379RFF/@@download/ENCFF379RFF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF553QQS bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 926297627 ENCODE Processing Pipeline 99fa0839ea5c83dd0a5f8266038b7e5d https://www.encodeproject.org/files/ENCFF553QQS/@@download/ENCFF553QQS.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF585RBR bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 534736853 ENCODE Processing Pipeline 1f724a5e005653f6845584d2583c5264 https://www.encodeproject.org/files/ENCFF585RBR/@@download/ENCFF585RBR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF363JGX bam alignments ENCSR321TTR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF286ECX 835706563 ENCODE Processing Pipeline b67da9b8b3316b492750e5e7372d1e80 https://www.encodeproject.org/files/ENCFF363JGX/@@download/ENCFF363JGX.bam mm10 released insufficient read depth for broad peaks control ENCFF665HNC bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF154TUX, ENCFF192DLE, ENCFF417FVF 3302575145 ENCODE Processing Pipeline 067e697924161c0152b0179243f5ad20 https://www.encodeproject.org/files/ENCFF665HNC/@@download/ENCFF665HNC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF998LUA bam alignments ENCSR455UTX ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF036EET, ENCFF982KIO 3007923393 ENCODE Processing Pipeline 5c708472bca01525eddb386af8277ec1 https://www.encodeproject.org/files/ENCFF998LUA/@@download/ENCFF998LUA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF293XAV bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALK, ENCFF018NEO 763752136 ENCODE Processing Pipeline a8eb625a6b3b44b584ec3a7b344dfb4b https://www.encodeproject.org/files/ENCFF293XAV/@@download/ENCFF293XAV.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF212UXF bam alignments ENCSR373OCX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALL, ENCFF018NEO 900353186 ENCODE Processing Pipeline b8fe35a1a7ecaec33bbb864f2e7ab961 https://www.encodeproject.org/files/ENCFF212UXF/@@download/ENCFF212UXF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF164TXZ bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTA, ENCFF018NEO 748968488 ENCODE Processing Pipeline f0eeea9537818452a45e0f64fa19f49b https://www.encodeproject.org/files/ENCFF164TXZ/@@download/ENCFF164TXZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF258NCT bam alignments ENCSR406VPQ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTB, ENCFF018NEO 743684567 ENCODE Processing Pipeline 5bbe2ae8af6a186e0cdd86d31ed7419e https://www.encodeproject.org/files/ENCFF258NCT/@@download/ENCFF258NCT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF471UAH bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF865TBT 1215614714 ENCODE Processing Pipeline 990e2acf70e6e59d362bad6f87d7a149 https://www.encodeproject.org/files/ENCFF471UAH/@@download/ENCFF471UAH.bam mm10 released mild to moderate bottlenecking ENCFF823HVL bam alignments ENCSR065CJC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF178AVU 1227591265 ENCODE Processing Pipeline 2fdb13284e8c423a2b0f062396337f1f https://www.encodeproject.org/files/ENCFF823HVL/@@download/ENCFF823HVL.bam mm10 released mild to moderate bottlenecking ENCFF366PWS bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF959TYN 1374054914 ENCODE Processing Pipeline 8afbf95cf08fb86def782ee777a46ce4 https://www.encodeproject.org/files/ENCFF366PWS/@@download/ENCFF366PWS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF788WWW bam alignments ENCSR105OGF ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833WGT 1031401780 ENCODE Processing Pipeline d333398b70aac33ed1af2d5c25d55146 https://www.encodeproject.org/files/ENCFF788WWW/@@download/ENCFF788WWW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF980RAX bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF407YBJ 1323701767 ENCODE Processing Pipeline d4993c978f495385b36055c3b36d3ea4 https://www.encodeproject.org/files/ENCFF980RAX/@@download/ENCFF980RAX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF551EAV bam alignments ENCSR731OMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF276VDQ 1799188750 ENCODE Processing Pipeline 2b21aa0e5f03a2bd6267e84860dfa824 https://www.encodeproject.org/files/ENCFF551EAV/@@download/ENCFF551EAV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF424QZD bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQO, ENCFF018NEO 724391712 ENCODE Processing Pipeline 73ca661ed4bc988efb6d60e3598e6bd3 https://www.encodeproject.org/files/ENCFF424QZD/@@download/ENCFF424QZD.bam mm10 released mixed read lengths, low read length, low read depth ENCFF767URV bam alignments ENCSR254WNU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQL, ENCFF018NEO 760698062 ENCODE Processing Pipeline af908c145b24edded352ebee05e1f0cf https://www.encodeproject.org/files/ENCFF767URV/@@download/ENCFF767URV.bam mm10 released mixed read lengths, low read length, low read depth ENCFF626OTI bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF702VXS, ENCFF896HWH 3253432922 ENCODE Processing Pipeline b9941ecd88ecefa6ba67dfbd417da522 https://www.encodeproject.org/files/ENCFF626OTI/@@download/ENCFF626OTI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF318OLQ bam alignments ENCSR857GQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF521BRF, ENCFF793MCX 2875852484 ENCODE Processing Pipeline f8d661ea2342625d8721e26399c1e85d https://www.encodeproject.org/files/ENCFF318OLQ/@@download/ENCFF318OLQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF067WJX bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIA, ENCFF018NEO, ENCFF403RZA 990485945 ENCODE Processing Pipeline 0273fadd8f7f78fbb16f8ab966f1a4cd https://www.encodeproject.org/files/ENCFF067WJX/@@download/ENCFF067WJX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF252MKC bam alignments ENCSR871CGP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHZ, ENCFF018NEO 1012095693 ENCODE Processing Pipeline 32ea01d5fc8214d653937f69c2bc6ed1 https://www.encodeproject.org/files/ENCFF252MKC/@@download/ENCFF252MKC.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF892TDG bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF593LEN 1837167150 ENCODE Processing Pipeline bf6e3f43ea4708985ad16a6a9a59fe6c https://www.encodeproject.org/files/ENCFF892TDG/@@download/ENCFF892TDG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF054UNT bam alignments ENCSR428GHF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF862IUC 1655517255 ENCODE Processing Pipeline 99434f1f04aecc384a74037984dfaffc https://www.encodeproject.org/files/ENCFF054UNT/@@download/ENCFF054UNT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF032NLC bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF073GXE 1931952718 ENCODE Processing Pipeline 849b80f0198ba49f986bbcaae5105e92 https://www.encodeproject.org/files/ENCFF032NLC/@@download/ENCFF032NLC.bam mm10 released inconsistent platforms ENCFF751TIJ bam alignments ENCSR412ODT ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF469MNG 1695297710 ENCODE Processing Pipeline a14ab72468f88aadaa8845496001454b https://www.encodeproject.org/files/ENCFF751TIJ/@@download/ENCFF751TIJ.bam mm10 released inconsistent platforms ENCFF066NXA bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUD, ENCFF018NEO 932712351 ENCODE Processing Pipeline 964c405363b7094486c7561aa5c45bb5 https://www.encodeproject.org/files/ENCFF066NXA/@@download/ENCFF066NXA.bam mm10 released low read length, control low read depth, low read depth ENCFF125QDH bam alignments ENCSR430JWT ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUF, ENCFF018NEO 1111340889 ENCODE Processing Pipeline 69af8d369d8056398cc86fc95c81aceb https://www.encodeproject.org/files/ENCFF125QDH/@@download/ENCFF125QDH.bam mm10 released low read length, control low read depth, low read depth ENCFF576RBC bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF267BGC 1801505653 ENCODE Processing Pipeline 3a532ff099b89ba2d16c6923a1d8c742 https://www.encodeproject.org/files/ENCFF576RBC/@@download/ENCFF576RBC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF261KJB bam alignments ENCSR574VME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF856VRD 1870240020 ENCODE Processing Pipeline 2274c242b8a550de07a7ba07e5dc9e49 https://www.encodeproject.org/files/ENCFF261KJB/@@download/ENCFF261KJB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF429BQC bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUI, ENCFF018NEO 1137047489 ENCODE Processing Pipeline 36c69508d436a93cc024560859b7e72a https://www.encodeproject.org/files/ENCFF429BQC/@@download/ENCFF429BQC.bam mm10 released low read length, control low read depth ENCFF074EHQ bam alignments ENCSR373LNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUE, ENCFF018NEO 1128529987 ENCODE Processing Pipeline 691d62795af6926502653947cff2a94e https://www.encodeproject.org/files/ENCFF074EHQ/@@download/ENCFF074EHQ.bam mm10 released low read length, control low read depth ENCFF446JLJ bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KIK, ENCFF018NEO 671611195 ENCODE Processing Pipeline 1ccf4f772d8ef3b47c6744f436508704 https://www.encodeproject.org/files/ENCFF446JLJ/@@download/ENCFF446JLJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF406QUP bam alignments ENCSR000CEL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIR, ENCFF018NEO 1004064996 ENCODE Processing Pipeline 6679af51a1e1ec0a24b452f71579f98f https://www.encodeproject.org/files/ENCFF406QUP/@@download/ENCFF406QUP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF131PLT bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 562408943 ENCODE Processing Pipeline dbd4fedfe0f411370eede0734eae9e51 https://www.encodeproject.org/files/ENCFF131PLT/@@download/ENCFF131PLT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF449KFK bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 565439135 ENCODE Processing Pipeline 7c11067724dcab9ca6209c59cae0ac52 https://www.encodeproject.org/files/ENCFF449KFK/@@download/ENCFF449KFK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF100CRL bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF261ILD, ENCFF973JMH 2806578336 ENCODE Processing Pipeline 4aad161c66ab990acc5c8c63f74604ee https://www.encodeproject.org/files/ENCFF100CRL/@@download/ENCFF100CRL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF915PPM bam alignments ENCSR709CLU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF520DGC, ENCFF777PMC 2936293520 ENCODE Processing Pipeline 965b6d24cd9c466f18b580d92e20999b https://www.encodeproject.org/files/ENCFF915PPM/@@download/ENCFF915PPM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF673LAV bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF237DIP 1068623243 ENCODE Processing Pipeline aad9acd96b8feaf523171a1f799111fb https://www.encodeproject.org/files/ENCFF673LAV/@@download/ENCFF673LAV.bam mm10 released inconsistent platforms ENCFF291OCV bam alignments ENCSR098USP ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF152MDB 1365049055 ENCODE Processing Pipeline f22b64f2d203db87498335ad02f5243b https://www.encodeproject.org/files/ENCFF291OCV/@@download/ENCFF291OCV.bam mm10 released inconsistent platforms ENCFF145AOI bam alignments ENCSR000DHC ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQR, ENCFF018NEO 1360581536 ENCODE Processing Pipeline 1903b1ffa1304578f62c8a4086cba780 https://www.encodeproject.org/files/ENCFF145AOI/@@download/ENCFF145AOI.bam mm10 released low read length, inconsistent platforms ENCFF267PKP bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF518TYD 927729537 ENCODE Processing Pipeline aa4930a8c569d3542f062be7941aa436 https://www.encodeproject.org/files/ENCFF267PKP/@@download/ENCFF267PKP.bam mm10 released mixed read lengths, low read length, low read depth ENCFF785EVA bam alignments ENCSR068XYW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF058DIN 724645449 ENCODE Processing Pipeline ffd11a6af960d7f6c25d092da61f1826 https://www.encodeproject.org/files/ENCFF785EVA/@@download/ENCFF785EVA.bam mm10 released mixed read lengths, low read length, low read depth ENCFF544PDT bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEQ, ENCFF018NEO 2510463538 ENCODE Processing Pipeline cfbb8875003c8fbfe825f40b5139d29e https://www.encodeproject.org/files/ENCFF544PDT/@@download/ENCFF544PDT.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF630KQK bam alignments ENCSR000DHH ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MES, ENCFF018NEO 2549215458 ENCODE Processing Pipeline e8bdcca2130f17bfa16833e163d154c9 https://www.encodeproject.org/files/ENCFF630KQK/@@download/ENCFF630KQK.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF513GMK bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETR, ENCFF018NEO 1178300049 ENCODE Processing Pipeline 35cab790a4c125f0c61ce73492464c91 https://www.encodeproject.org/files/ENCFF513GMK/@@download/ENCFF513GMK.bam mm10 released insufficient read depth, control insufficient read depth ENCFF270SYW bam alignments ENCSR467UGM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETO, ENCFF018NEO 920563191 ENCODE Processing Pipeline e1915ba41180c8a4af401b87567090a5 https://www.encodeproject.org/files/ENCFF270SYW/@@download/ENCFF270SYW.bam mm10 released insufficient read depth, control insufficient read depth ENCFF806TLD bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGZ, ENCFF018NEO, ENCFF562IJB 1156340999 ENCODE Processing Pipeline e56ea776a5250c21682ed8026262d14e https://www.encodeproject.org/files/ENCFF806TLD/@@download/ENCFF806TLD.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF266JUV bam alignments ENCSR389EYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGX, ENCFF018NEO, ENCFF489THL 1098148392 ENCODE Processing Pipeline 909f797b97bc616b73ecf36c509c9673 https://www.encodeproject.org/files/ENCFF266JUV/@@download/ENCFF266JUV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF312NPA bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIG, ENCFF018NEO, ENCFF077KSB 1196432927 ENCODE Processing Pipeline 93d332aa963789c39d2b7b2a7ce097d0 https://www.encodeproject.org/files/ENCFF312NPA/@@download/ENCFF312NPA.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF743VEF bam alignments ENCSR235JCY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AII, ENCFF018NEO, ENCFF919GKE 1265415900 ENCODE Processing Pipeline e59f64a6d0d53f92828c961d4f1b9b78 https://www.encodeproject.org/files/ENCFF743VEF/@@download/ENCFF743VEF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF380FFY bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF408DZQ 1185790203 ENCODE Processing Pipeline b4bfa0a1ed86e8bc09ae4c2a390e1505 https://www.encodeproject.org/files/ENCFF380FFY/@@download/ENCFF380FFY.bam mm10 released inconsistent platforms ENCFF222SXN bam alignments ENCSR773EGV ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF766WMT 1649506047 ENCODE Processing Pipeline e508842ca0a6368cacefde2a2dc740b2 https://www.encodeproject.org/files/ENCFF222SXN/@@download/ENCFF222SXN.bam mm10 released inconsistent platforms ENCFF962VUP bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESR, ENCFF018NEO 1030110388 ENCODE Processing Pipeline d0bf518a813d113059b8bf66cf5c1338 https://www.encodeproject.org/files/ENCFF962VUP/@@download/ENCFF962VUP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF927HGA bam alignments ENCSR141ZQF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EST, ENCFF018NEO 1034958855 ENCODE Processing Pipeline d43f29b10e026b2d462f3c8f6b7b513c https://www.encodeproject.org/files/ENCFF927HGA/@@download/ENCFF927HGA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF882ITE bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIL, ENCFF018NEO, ENCFF699WMR 1248493198 ENCODE Processing Pipeline fdb2a240a7027abb2227b0fec6c4bed2 https://www.encodeproject.org/files/ENCFF882ITE/@@download/ENCFF882ITE.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF504OKT bam alignments ENCSR069TDC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIQ, ENCFF018NEO 1623775648 ENCODE Processing Pipeline c0000dd7019829211cbceff5a570581f https://www.encodeproject.org/files/ENCFF504OKT/@@download/ENCFF504OKT.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth ENCFF912GGR bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF380ABN, ENCFF773RTW 2946451801 ENCODE Processing Pipeline 811cdc6b7a9f61c22e4946448584e447 https://www.encodeproject.org/files/ENCFF912GGR/@@download/ENCFF912GGR.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF802NAM bam alignments ENCSR871KVM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF235AQC, ENCFF354RLO 3010902035 ENCODE Processing Pipeline 40da3babcef553f5f7860e8f3735696f https://www.encodeproject.org/files/ENCFF802NAM/@@download/ENCFF802NAM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF245DAJ bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWG, ENCFF018NEO 638605009 ENCODE Processing Pipeline 82b2b247c032293d32a70e634e6cfdc2 https://www.encodeproject.org/files/ENCFF245DAJ/@@download/ENCFF245DAJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF592SHT bam alignments ENCSR000CCV ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWF, ENCFF018NEO 377210616 ENCODE Processing Pipeline ae0b04c5794b5cc8bf10ffe2c387f514 https://www.encodeproject.org/files/ENCFF592SHT/@@download/ENCFF592SHT.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF884HYZ bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF702RBP 1443163518 ENCODE Processing Pipeline 65dacd2e372487d760316a72f62a2143 https://www.encodeproject.org/files/ENCFF884HYZ/@@download/ENCFF884HYZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF955BLP bam alignments ENCSR335TVR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF850TBX 1766646808 ENCODE Processing Pipeline 4675f07675774b3c3bb8df7eb8c6eb34 https://www.encodeproject.org/files/ENCFF955BLP/@@download/ENCFF955BLP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF079JAD bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF145WXV, ENCFF263OPF, ENCFF511ESM 2914012161 ENCODE Processing Pipeline 5e112f0822adcdd9b28bd0221fdae1b8 https://www.encodeproject.org/files/ENCFF079JAD/@@download/ENCFF079JAD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF269JKO bam alignments ENCSR371AKO ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF146GFU, ENCFF347ALK, ENCFF634EPK 2720002082 ENCODE Processing Pipeline fd19c3b169c10cd3773560bba224b9a8 https://www.encodeproject.org/files/ENCFF269JKO/@@download/ENCFF269JKO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF878QWY bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRH, ENCFF018NEO 499145854 ENCODE Processing Pipeline 844600c6baf5ef9c855b8ede2a05306c https://www.encodeproject.org/files/ENCFF878QWY/@@download/ENCFF878QWY.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF586IKN bam alignments ENCSR897WBY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRI, ENCFF018NEO 690332596 ENCODE Processing Pipeline ec92c472f04fc88770e8e0f65425e518 https://www.encodeproject.org/files/ENCFF586IKN/@@download/ENCFF586IKN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF018PUS bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUI, ENCFF018NEO 957190599 ENCODE Processing Pipeline ddbb5bda1c88c7fdcb6c50819ef9c197 https://www.encodeproject.org/files/ENCFF018PUS/@@download/ENCFF018PUS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF471NJK bam alignments ENCSR000CFS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUG, ENCFF018NEO 1025119981 ENCODE Processing Pipeline d5f2632ea7590581b33457b5ee42e030 https://www.encodeproject.org/files/ENCFF471NJK/@@download/ENCFF471NJK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth insufficient read depth, control insufficient read depth ENCFF553HUH bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCS, ENCFF018NEO 242826036 ENCODE Processing Pipeline 14193095dbfb83a56a350dd172455365 https://www.encodeproject.org/files/ENCFF553HUH/@@download/ENCFF553HUH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF487BLR bam alignments ENCSR000CAJ ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCU, ENCFF018NEO 401835145 ENCODE Processing Pipeline 5d1217032ada3eff969e42541b109e34 https://www.encodeproject.org/files/ENCFF487BLR/@@download/ENCFF487BLR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF569VLD bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWZ, ENCFF018NEO 1009949060 ENCODE Processing Pipeline bc403e803a0f8f4c8086fe8a64436766 https://www.encodeproject.org/files/ENCFF569VLD/@@download/ENCFF569VLD.bam mm10 released low read length ENCFF053WYD bam alignments ENCSR572KYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXC, ENCFF018NEO 1022899356 ENCODE Processing Pipeline 11ba33ee6b76e30794f259aecb82b668 https://www.encodeproject.org/files/ENCFF053WYD/@@download/ENCFF053WYD.bam mm10 released low read length ENCFF899KXE bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF183MBY 1712134670 ENCODE Processing Pipeline 34ea899d17d6a82a9cbc39b91ebecf52 https://www.encodeproject.org/files/ENCFF899KXE/@@download/ENCFF899KXE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF076YFQ bam alignments ENCSR599GVS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF129PWT 2018294429 ENCODE Processing Pipeline d6d4eacc2393621b0916311717ec1de6 https://www.encodeproject.org/files/ENCFF076YFQ/@@download/ENCFF076YFQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF167AOI bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF772KXZ 2675047735 ENCODE Processing Pipeline 0e3ee3dc832b4c970569eeb2a48eba03 https://www.encodeproject.org/files/ENCFF167AOI/@@download/ENCFF167AOI.bam mm10 released inconsistent platforms ENCFF071PID bam alignments ENCSR436FYE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF805QZD 3124520579 ENCODE Processing Pipeline 7275083a87728a8d7f122174a5fd0ea5 https://www.encodeproject.org/files/ENCFF071PID/@@download/ENCFF071PID.bam mm10 released inconsistent platforms ENCFF140ZIV bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DQD, ENCFF002DQE, ENCFF018NEO 965039534 ENCODE Processing Pipeline 120c256d11476083cba845fb2ab1dd8e https://www.encodeproject.org/files/ENCFF140ZIV/@@download/ENCFF140ZIV.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF141EJM bam alignments ENCSR270WWV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DQB, ENCFF002DQC, ENCFF018NEO 1183294518 ENCODE Processing Pipeline a8402023e60fee4213d850f0b8d862a7 https://www.encodeproject.org/files/ENCFF141EJM/@@download/ENCFF141EJM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF018XRJ bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF673WCQ 1201869438 ENCODE Processing Pipeline b0822431e1f1e240a3d1a668f9611558 https://www.encodeproject.org/files/ENCFF018XRJ/@@download/ENCFF018XRJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF781ZAA bam alignments ENCSR377RKW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF999CHE 1319719683 ENCODE Processing Pipeline b1a9ca49b634fd6b167161f768a54c26 https://www.encodeproject.org/files/ENCFF781ZAA/@@download/ENCFF781ZAA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF962ZVS bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOX, ENCFF018NEO 352638982 ENCODE Processing Pipeline 48dbca9de32e588651c613124a1053c5 https://www.encodeproject.org/files/ENCFF962ZVS/@@download/ENCFF962ZVS.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF321KNF bam alignments ENCSR000CDI ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KPB, ENCFF018NEO 280359999 ENCODE Processing Pipeline b4dc7f202c17d7a411bf2ee0b383627d https://www.encodeproject.org/files/ENCFF321KNF/@@download/ENCFF321KNF.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF142TWW bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF280GFX, ENCFF464PBQ 3303365956 ENCODE Processing Pipeline 07040a2e5e28417416a163cdebe13004 https://www.encodeproject.org/files/ENCFF142TWW/@@download/ENCFF142TWW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF070WUO bam alignments ENCSR599PKR ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF100BZD, ENCFF435DWE, ENCFF952AQZ 3182934549 ENCODE Processing Pipeline 55d9ed14b1cfbfd40397a6d3bafdb298 https://www.encodeproject.org/files/ENCFF070WUO/@@download/ENCFF070WUO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF500REJ bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF054WZL, ENCFF260JFF 2618377989 ENCODE Processing Pipeline d752eff41179f6b32eaf11119050ad50 https://www.encodeproject.org/files/ENCFF500REJ/@@download/ENCFF500REJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF993UQZ bam alignments ENCSR349NIS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF499YDW 2819284982 ENCODE Processing Pipeline df0bf0e6b63898879005a980610ff9bb https://www.encodeproject.org/files/ENCFF993UQZ/@@download/ENCFF993UQZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF246IWX bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEQ, ENCFF018NEO 496236444 ENCODE Processing Pipeline a09d65ec8c5a0d2501304d88a0ea85c1 https://www.encodeproject.org/files/ENCFF246IWX/@@download/ENCFF246IWX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF017QQB bam alignments ENCSR000CBG ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KER, ENCFF018NEO 500017189 ENCODE Processing Pipeline f3cb8a639bf5e36df586b9d1303cae8b https://www.encodeproject.org/files/ENCFF017QQB/@@download/ENCFF017QQB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF031OYA bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF223XHF 2595493157 ENCODE Processing Pipeline 96e01a9e46ff2f0afc11c262dbda171e https://www.encodeproject.org/files/ENCFF031OYA/@@download/ENCFF031OYA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF514GVM bam alignments ENCSR070OXL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF448VOB, ENCFF528TKO, ENCFF835CWG 3291859273 ENCODE Processing Pipeline 7d360b14ac2692d1bcbb7ae14435d30a https://www.encodeproject.org/files/ENCFF514GVM/@@download/ENCFF514GVM.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF338KYU bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGQ, ENCFF018NEO 907600759 ENCODE Processing Pipeline d641da69f9870c1eed68f4961c9bafb7 https://www.encodeproject.org/files/ENCFF338KYU/@@download/ENCFF338KYU.bam mm10 released low read length, control low read depth insufficient read depth ENCFF891ETM bam alignments ENCSR148IGO ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGO, ENCFF018NEO 990207437 ENCODE Processing Pipeline b4fa141f0996548885aef5f593b7ea49 https://www.encodeproject.org/files/ENCFF891ETM/@@download/ENCFF891ETM.bam mm10 released low read length, control low read depth insufficient read depth ENCFF874IUF bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF660YBH, ENCFF958NFC 3335595886 ENCODE Processing Pipeline 650d768103c0f044296a6225203d9c6d https://www.encodeproject.org/files/ENCFF874IUF/@@download/ENCFF874IUF.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF497DWP bam alignments ENCSR264HHL ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF515QMT, ENCFF834BNS 3116230981 ENCODE Processing Pipeline 8f0ed70de36375f606c50faec96a8876 https://www.encodeproject.org/files/ENCFF497DWP/@@download/ENCFF497DWP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF039FZR bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKU, ENCFF018NEO 1262420191 ENCODE Processing Pipeline 1d651981b188d37e24f0917894f59790 https://www.encodeproject.org/files/ENCFF039FZR/@@download/ENCFF039FZR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF037NXI bam alignments ENCSR234YTN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKV, ENCFF018NEO 1098594764 ENCODE Processing Pipeline 6409344fa3f3d43513ce1a9dd39c7364 https://www.encodeproject.org/files/ENCFF037NXI/@@download/ENCFF037NXI.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF178UVY bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF487ADZ 1443809891 ENCODE Processing Pipeline df07450b8da4e36fb59eddb2bbd22ee9 https://www.encodeproject.org/files/ENCFF178UVY/@@download/ENCFF178UVY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF686GYW bam alignments ENCSR420MUV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF976HED 1238154013 ENCODE Processing Pipeline 0627e0f3a8a976aa5517e33a3bbb5e0e https://www.encodeproject.org/files/ENCFF686GYW/@@download/ENCFF686GYW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF155VOG bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KUC, ENCFF018NEO 522076024 ENCODE Processing Pipeline 4e0724fecc2ddd4ec035cace01361e79 https://www.encodeproject.org/files/ENCFF155VOG/@@download/ENCFF155VOG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF093VOK bam alignments ENCSR000CFR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KUF, ENCFF018NEO 705681615 ENCODE Processing Pipeline f9b07408d5c25dbc85a927997428596c https://www.encodeproject.org/files/ENCFF093VOK/@@download/ENCFF093VOK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF647QBV bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APF, ENCFF018NEO 1063655190 ENCODE Processing Pipeline f457cd7742dfdfed75a52269b4d07e30 https://www.encodeproject.org/files/ENCFF647QBV/@@download/ENCFF647QBV.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF167HPH bam alignments ENCSR356LBC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002API, ENCFF018NEO 1361533537 ENCODE Processing Pipeline ebcc1700af263cfb46a68b1f0d66897d https://www.encodeproject.org/files/ENCFF167HPH/@@download/ENCFF167HPH.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF887RWQ bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUT, ENCFF018NEO 1028334062 ENCODE Processing Pipeline e1ac4ce1442f633183f56e13ef0baf15 https://www.encodeproject.org/files/ENCFF887RWQ/@@download/ENCFF887RWQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF769SND bam alignments ENCSR000DII ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUW, ENCFF018NEO 4802892124 ENCODE Processing Pipeline 7fccbdaf3005803a405ec2967dcfd497 https://www.encodeproject.org/files/ENCFF769SND/@@download/ENCFF769SND.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF477YGA bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF707NNE 994844992 ENCODE Processing Pipeline 2cc008f513f16d28c0aeaedbabb174fa https://www.encodeproject.org/files/ENCFF477YGA/@@download/ENCFF477YGA.bam mm10 released low read length control insufficient read depth ENCFF964HOB bam alignments ENCSR095FDG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF164OMU 1190966161 ENCODE Processing Pipeline 55061fd4ed04d2e7f4d25db78eddae6c https://www.encodeproject.org/files/ENCFF964HOB/@@download/ENCFF964HOB.bam mm10 released low read length control insufficient read depth ENCFF961NOC bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF052QGO 1654273842 ENCODE Processing Pipeline 778a4994c75a729a1b1bdb46fa001a10 https://www.encodeproject.org/files/ENCFF961NOC/@@download/ENCFF961NOC.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF768UWF bam alignments ENCSR905FFU ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF656XPO, ENCFF981HPJ 1272193377 ENCODE Processing Pipeline 8b5bca6fef96ffc9b293a9515b23fafa https://www.encodeproject.org/files/ENCFF768UWF/@@download/ENCFF768UWF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF526PLC bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKI, ENCFF018NEO 1007697776 ENCODE Processing Pipeline d42c96e5a8d537f27f9ef6316a24bb77 https://www.encodeproject.org/files/ENCFF526PLC/@@download/ENCFF526PLC.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF867HNK bam alignments ENCSR159RVN ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKC, ENCFF018NEO 1246913888 ENCODE Processing Pipeline 1245257dae25b2ba5d6d9574133997c3 https://www.encodeproject.org/files/ENCFF867HNK/@@download/ENCFF867HNK.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF727SKQ bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGU, ENCFF018NEO, ENCFF080WRH 1005552627 ENCODE Processing Pipeline 3b5813b15639ccf9d6b65c8db5161776 https://www.encodeproject.org/files/ENCFF727SKQ/@@download/ENCFF727SKQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF177RNG bam alignments ENCSR196ENU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGT, ENCFF018NEO, ENCFF665KBE 1129433414 ENCODE Processing Pipeline 53c3171f0aa4cb1e567b33e2e0b978d3 https://www.encodeproject.org/files/ENCFF177RNG/@@download/ENCFF177RNG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF150DAL bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF224CAY 2666767955 ENCODE Processing Pipeline b6419e000c69aebbad6464798f59bdf4 https://www.encodeproject.org/files/ENCFF150DAL/@@download/ENCFF150DAL.bam mm10 released inconsistent platforms ENCFF145LTP bam alignments ENCSR663VWL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF415TZY 2667514830 ENCODE Processing Pipeline 741c5548642a9600d489e79241dbf5c7 https://www.encodeproject.org/files/ENCFF145LTP/@@download/ENCFF145LTP.bam mm10 released inconsistent platforms ENCFF863NZX bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQH, ENCFF018NEO 616707328 ENCODE Processing Pipeline ff2b43332d872fdccf769705402cbd69 https://www.encodeproject.org/files/ENCFF863NZX/@@download/ENCFF863NZX.bam mm10 released low read depth insufficient read depth ENCFF399OUP bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQD, ENCFF018NEO 592939093 ENCODE Processing Pipeline e3b01203d4faa133f9a4dbd6d143a1f7 https://www.encodeproject.org/files/ENCFF399OUP/@@download/ENCFF399OUP.bam mm10 released low read depth insufficient read depth ENCFF957ZHQ bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQH, ENCFF018NEO 480389505 ENCODE Processing Pipeline 321e665f741d8a05a85573b4d467959b https://www.encodeproject.org/files/ENCFF957ZHQ/@@download/ENCFF957ZHQ.bam mm10 released low read depth insufficient read depth ENCFF310BPU bam alignments ENCSR742WLX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQD, ENCFF018NEO 459618619 ENCODE Processing Pipeline c5cb04eebd8bba2f55f7f0fbc602fac8 https://www.encodeproject.org/files/ENCFF310BPU/@@download/ENCFF310BPU.bam mm10 released low read depth insufficient read depth ENCFF985CUW bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 610485955 ENCODE Processing Pipeline 8131bd3f2960fe0de7233c097b28d7b6 https://www.encodeproject.org/files/ENCFF985CUW/@@download/ENCFF985CUW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF284CFB bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 610945438 ENCODE Processing Pipeline 23a94bbc142d3cb34c911c39da132a7b https://www.encodeproject.org/files/ENCFF284CFB/@@download/ENCFF284CFB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF031OBD bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRK, ENCFF018NEO 568921165 ENCODE Processing Pipeline 31fdc5030d18d55606b1fa94e45c2b75 https://www.encodeproject.org/files/ENCFF031OBD/@@download/ENCFF031OBD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF834BEU bam alignments ENCSR129LAP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRJ, ENCFF018NEO 726465682 ENCODE Processing Pipeline 3058ab5628d01291a45c83e0d2409878 https://www.encodeproject.org/files/ENCFF834BEU/@@download/ENCFF834BEU.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF926IRL bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF910TMA, ENCFF946FVI 3503823931 ENCODE Processing Pipeline 18b42097cfdb9f556e238565452777c9 https://www.encodeproject.org/files/ENCFF926IRL/@@download/ENCFF926IRL.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF116JED bam alignments ENCSR919DDC ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF917WZJ, ENCFF994JBM 3201697256 ENCODE Processing Pipeline 6180f6f837280d9dedc3a97936bbe727 https://www.encodeproject.org/files/ENCFF116JED/@@download/ENCFF116JED.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF055PTM bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGF, ENCFF018NEO 1158222474 ENCODE Processing Pipeline d8e365aa996cc4acb172752f2132e7b2 https://www.encodeproject.org/files/ENCFF055PTM/@@download/ENCFF055PTM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF610GSF bam alignments ENCSR357OED ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGH, ENCFF018NEO 1221089419 ENCODE Processing Pipeline 880eee057959d074cc269e037f345c1c https://www.encodeproject.org/files/ENCFF610GSF/@@download/ENCFF610GSF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF119USK bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF596BNN 1730188053 ENCODE Processing Pipeline bb669b8787d16d6e8d5a2c66c736530e https://www.encodeproject.org/files/ENCFF119USK/@@download/ENCFF119USK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF920CYN bam alignments ENCSR835BZO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF053SSJ 1686922579 ENCODE Processing Pipeline 119d0192b1f14319a55f15fee6384552 https://www.encodeproject.org/files/ENCFF920CYN/@@download/ENCFF920CYN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF972UAI bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF816WGW 1407467347 ENCODE Processing Pipeline 051a7db3775ffbb81dda1d1248e9f624 https://www.encodeproject.org/files/ENCFF972UAI/@@download/ENCFF972UAI.bam mm10 released inconsistent platforms ENCFF517SID bam alignments ENCSR483DEV ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF293USS 1817126771 ENCODE Processing Pipeline 088d69d425461d49ce2a1f9f4d277aab https://www.encodeproject.org/files/ENCFF517SID/@@download/ENCFF517SID.bam mm10 released inconsistent platforms ENCFF417IOF bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERY, ENCFF018NEO, ENCFF594ULG 1365574155 ENCODE Processing Pipeline 4a0cfbe799b16facfd2cad0332205537 https://www.encodeproject.org/files/ENCFF417IOF/@@download/ENCFF417IOF.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF755WEB bam alignments ENCSR515XWH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESB, ENCFF018NEO, ENCFF658EQW 1350440157 ENCODE Processing Pipeline 64ef28f43b04feb601eb5ccc29a08729 https://www.encodeproject.org/files/ENCFF755WEB/@@download/ENCFF755WEB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF132KBH bam alignments ENCSR281FZS ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF329PLP 967295160 ENCODE Processing Pipeline 558e9487eb6e07894129021ba52a5818 https://www.encodeproject.org/files/ENCFF132KBH/@@download/ENCFF132KBH.bam mm10 released insufficient read depth for broad peaks control ENCFF554RMZ bam alignments ENCSR431KAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF314WCC 1005392706 ENCODE Processing Pipeline 1c111635f2d1f09b462ad671afb02c14 https://www.encodeproject.org/files/ENCFF554RMZ/@@download/ENCFF554RMZ.bam mm10 released insufficient read depth for broad peaks control ENCFF562KIH bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXG, ENCFF018NEO 1049021311 ENCODE Processing Pipeline d16ac39d9eb5e18de2af412ec6adec47 https://www.encodeproject.org/files/ENCFF562KIH/@@download/ENCFF562KIH.bam mm10 released low read length, mild to moderate bottlenecking ENCFF082OHV bam alignments ENCSR953HNY ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXE, ENCFF018NEO 899287770 ENCODE Processing Pipeline d7407aa91f465e7c8007b3e663082310 https://www.encodeproject.org/files/ENCFF082OHV/@@download/ENCFF082OHV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF986TQY bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF652YKB 2991978635 ENCODE Processing Pipeline 6581e62e9fbbbd92292d694cf5779832 https://www.encodeproject.org/files/ENCFF986TQY/@@download/ENCFF986TQY.bam mm10 released inconsistent platforms ENCFF046IWE bam alignments ENCSR045NOD ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF260YPM 3107955349 ENCODE Processing Pipeline 9cc54b11e92fafdf2fd8edef9ed9cc5d https://www.encodeproject.org/files/ENCFF046IWE/@@download/ENCFF046IWE.bam mm10 released inconsistent platforms ENCFF379WSY bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LAO, ENCFF018NEO 205123499 ENCODE Processing Pipeline 274fdbf89b652d3da4dc2588d463c84a https://www.encodeproject.org/files/ENCFF379WSY/@@download/ENCFF379WSY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF132CII bam alignments ENCSR000CDB ChIP-seq UBERON:0000955 brain tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF018NEO, ENCFF786ODW 654557969 ENCODE Processing Pipeline 41dd513fd206b7609371a3cf6e55ac22 https://www.encodeproject.org/files/ENCFF132CII/@@download/ENCFF132CII.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF196LBN bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDK, ENCFF018NEO 465800035 ENCODE Processing Pipeline c548833a6c03d8bcabe46301b6240466 https://www.encodeproject.org/files/ENCFF196LBN/@@download/ENCFF196LBN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF156BTU bam alignments ENCSR000CGS ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDL, ENCFF018NEO 418555332 ENCODE Processing Pipeline 52ed03070e95143cceb9f5fdabe33e1c https://www.encodeproject.org/files/ENCFF156BTU/@@download/ENCFF156BTU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF472HVK bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQW, ENCFF018NEO 872889247 ENCODE Processing Pipeline 325caa5b99e9a377be3f3d64829f632d https://www.encodeproject.org/files/ENCFF472HVK/@@download/ENCFF472HVK.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF815EAE bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARB, ENCFF018NEO 1303544272 ENCODE Processing Pipeline 985969f84ad955f0a082edbc8bda732a https://www.encodeproject.org/files/ENCFF815EAE/@@download/ENCFF815EAE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF451QHB bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQW, ENCFF018NEO 667705403 ENCODE Processing Pipeline c9419d07b6fb0d294e6ca585ec4fa0e8 https://www.encodeproject.org/files/ENCFF451QHB/@@download/ENCFF451QHB.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF438SAE bam alignments ENCSR617RDY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARB, ENCFF018NEO 999560738 ENCODE Processing Pipeline 545dd54e0e72fd4fbaab5ef0ee4562a3 https://www.encodeproject.org/files/ENCFF438SAE/@@download/ENCFF438SAE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF852VCN bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUK, ENCFF018NEO 1117276499 ENCODE Processing Pipeline 0281e681c1cf8c79a40129d2ec8de09a https://www.encodeproject.org/files/ENCFF852VCN/@@download/ENCFF852VCN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF822DNM bam alignments ENCSR872WGX ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUA, ENCFF018NEO 1019814549 ENCODE Processing Pipeline 90e3c765a22df92c6cd34c8f31b1c92d https://www.encodeproject.org/files/ENCFF822DNM/@@download/ENCFF822DNM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF671WIS bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 400255827 ENCODE Processing Pipeline 00c98166791f20d9cde0244725fec6a4 https://www.encodeproject.org/files/ENCFF671WIS/@@download/ENCFF671WIS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF977LTN bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 976371376 ENCODE Processing Pipeline 87c806fad99da0a5dde553c0806efa8c https://www.encodeproject.org/files/ENCFF977LTN/@@download/ENCFF977LTN.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF598XGJ bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF565BAM 1229026599 ENCODE Processing Pipeline 2604fc816f7ad73bd18d944d4f4e3fd9 https://www.encodeproject.org/files/ENCFF598XGJ/@@download/ENCFF598XGJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF104RYN bam alignments ENCSR961PNM ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF473KAE 1518577797 ENCODE Processing Pipeline b97bc225783f9d8e0cfa33c32b983899 https://www.encodeproject.org/files/ENCFF104RYN/@@download/ENCFF104RYN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF494EHR bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHK, ENCFF018NEO 550888113 ENCODE Processing Pipeline 02c54441481cbd4ff6d5e2592dc3a9ba https://www.encodeproject.org/files/ENCFF494EHR/@@download/ENCFF494EHR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF044QFP bam alignments ENCSR000CEJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHO, ENCFF018NEO 848068980 ENCODE Processing Pipeline 75ae4b86f302f1e470b7d25e2bf45ed1 https://www.encodeproject.org/files/ENCFF044QFP/@@download/ENCFF044QFP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, control insufficient read depth ENCFF318FYW bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF003TMP, ENCFF018NEO 1861661078 ENCODE Processing Pipeline f116838115ac4e81e77eabe4e13da3b8 https://www.encodeproject.org/files/ENCFF318FYW/@@download/ENCFF318FYW.bam mm10 released inconsistent platforms ENCFF057ELO bam alignments ENCSR956ZCG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF858IYQ 1650729150 ENCODE Processing Pipeline cf0edc99a4307e6d4385bea64552ba57 https://www.encodeproject.org/files/ENCFF057ELO/@@download/ENCFF057ELO.bam mm10 released inconsistent platforms ENCFF396CVK bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APU, ENCFF018NEO 865960078 ENCODE Processing Pipeline 96544b667470d3eabb3a374557fd328d https://www.encodeproject.org/files/ENCFF396CVK/@@download/ENCFF396CVK.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF506NSJ bam alignments ENCSR840PFW ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APV, ENCFF018NEO 967743920 ENCODE Processing Pipeline 431ef5ec8b61217a974a4862a064f1c7 https://www.encodeproject.org/files/ENCFF506NSJ/@@download/ENCFF506NSJ.bam mm10 released low read length, mixed read lengths insufficient read depth for broad peaks control ENCFF621MOH bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQM, ENCFF018NEO 991133680 ENCODE Processing Pipeline ef0277730c93ac48e777ac1e5c9fc932 https://www.encodeproject.org/files/ENCFF621MOH/@@download/ENCFF621MOH.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF568CQH bam alignments ENCSR413VHH ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQK, ENCFF018NEO 929637287 ENCODE Processing Pipeline 5df8baf050aef4dc04d294721f2cf4bb https://www.encodeproject.org/files/ENCFF568CQH/@@download/ENCFF568CQH.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF867VYO bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MLS, ENCFF018NEO 557658280 ENCODE Processing Pipeline 3c8a5d4c6d5fee1154ac6cd840ee8f0c https://www.encodeproject.org/files/ENCFF867VYO/@@download/ENCFF867VYO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF318FKF bam alignments ENCSR000DIT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MLY, ENCFF018NEO 4081901005 ENCODE Processing Pipeline bf2c8f819d7b3de25f4ec0dca5c8a5df https://www.encodeproject.org/files/ENCFF318FKF/@@download/ENCFF318FKF.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF924UTR bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 552183629 ENCODE Processing Pipeline 0ab1bb640a289d746bbd0f9a795a733a https://www.encodeproject.org/files/ENCFF924UTR/@@download/ENCFF924UTR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF403JXO bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 695761121 ENCODE Processing Pipeline de03dbb7d45c4e1ea7191c1801b343c4 https://www.encodeproject.org/files/ENCFF403JXO/@@download/ENCFF403JXO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF235EMQ bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIY, ENCFF018NEO, ENCFF465YRG 959377957 ENCODE Processing Pipeline 76a8ceb1cb9d56d595b97245f6a73bcd https://www.encodeproject.org/files/ENCFF235EMQ/@@download/ENCFF235EMQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF739AYO bam alignments ENCSR951UWY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIU, ENCFF018NEO 1022272273 ENCODE Processing Pipeline 41851d525a3e900221591b09549caa87 https://www.encodeproject.org/files/ENCFF739AYO/@@download/ENCFF739AYO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF965EGM bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTW, ENCFF018NEO, ENCFF826ZDX 1033099728 ENCODE Processing Pipeline e11195162720e82596e7d09a6bd26137 https://www.encodeproject.org/files/ENCFF965EGM/@@download/ENCFF965EGM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF970VYC bam alignments ENCSR545BRW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTT, ENCFF018NEO, ENCFF642PZF 1187665135 ENCODE Processing Pipeline 6093f61f3411614f6e53f4ef6c8390e8 https://www.encodeproject.org/files/ENCFF970VYC/@@download/ENCFF970VYC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF816XGO bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 3165515136 ENCODE Processing Pipeline 2911085887f82d6721cb2243a0671d3d https://www.encodeproject.org/files/ENCFF816XGO/@@download/ENCFF816XGO.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF556CHE bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 3894800981 ENCODE Processing Pipeline d6258b64429604f68da5d757bebebee2 https://www.encodeproject.org/files/ENCFF556CHE/@@download/ENCFF556CHE.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF134TLH bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMH, ENCFF018NEO 535145654 ENCODE Processing Pipeline eb71035550f7169c47f0678a36685237 https://www.encodeproject.org/files/ENCFF134TLH/@@download/ENCFF134TLH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF810KFI bam alignments ENCSR052CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AML, ENCFF018NEO 800777559 ENCODE Processing Pipeline c9ca6034c9b712241606497720814596 https://www.encodeproject.org/files/ENCFF810KFI/@@download/ENCFF810KFI.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF225JPR bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOK, ENCFF018NEO 744600453 ENCODE Processing Pipeline 4aed78150ac977724f92ee61dd610864 https://www.encodeproject.org/files/ENCFF225JPR/@@download/ENCFF225JPR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF589OMC bam alignments ENCSR274ACJ ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOG, ENCFF018NEO 820507515 ENCODE Processing Pipeline 95784571c1cb1308e37588ba5cc26928 https://www.encodeproject.org/files/ENCFF589OMC/@@download/ENCFF589OMC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF117RLB bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 715236493 ENCODE Processing Pipeline 8b3b75bdedf391e6e76868046d6bdf11 https://www.encodeproject.org/files/ENCFF117RLB/@@download/ENCFF117RLB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF069HIE bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 759339058 ENCODE Processing Pipeline 857be1ae1b7470936b5fdcb741671cd4 https://www.encodeproject.org/files/ENCFF069HIE/@@download/ENCFF069HIE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF216XEK bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAJ, ENCFF018NEO 2022197775 ENCODE Processing Pipeline da109e81332c26c13d053ffbb093ff83 https://www.encodeproject.org/files/ENCFF216XEK/@@download/ENCFF216XEK.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF244QZP bam alignments ENCSR000DHM ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAC, ENCFF018NEO 1152393697 ENCODE Processing Pipeline 92419f928594c2e5e0da04ac1c6afa03 https://www.encodeproject.org/files/ENCFF244QZP/@@download/ENCFF244QZP.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF003TGX bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXF, ENCFF018NEO 502528657 ENCODE Processing Pipeline 1d920e0daf0f476da9451f0d96e010f2 https://www.encodeproject.org/files/ENCFF003TGX/@@download/ENCFF003TGX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF693LMF bam alignments ENCSR000CFY ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXN, ENCFF018NEO 252763544 ENCODE Processing Pipeline 926d35a7defe071a70c0eee207c8dda4 https://www.encodeproject.org/files/ENCFF693LMF/@@download/ENCFF693LMF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF241CAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 488592776 ENCODE Processing Pipeline 57d8cf856774ce53024ab4c7cb8f9d85 https://www.encodeproject.org/files/ENCFF241CAL/@@download/ENCFF241CAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF877FAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 448035213 ENCODE Processing Pipeline fa4de8a1b7ea0c211b98c2587dc53a7c https://www.encodeproject.org/files/ENCFF877FAL/@@download/ENCFF877FAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF048NTI bam alignments ENCSR000AIT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIV, ENCFF018NEO 885065243 ENCODE Processing Pipeline 0342ec4399fe5f7fd3b8cb6e64fabfde https://www.encodeproject.org/files/ENCFF048NTI/@@download/ENCFF048NTI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF258NUS bam alignments ENCSR000AJS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEA, ENCFF001IEB, ENCFF001IEC, ENCFF001IED, ENCFF001IEE, ENCFF018NEO 817258349 ENCODE Processing Pipeline 1bcf4e9fe52a21c433be9b3a82c062a4 https://www.encodeproject.org/files/ENCFF258NUS/@@download/ENCFF258NUS.bam mm10 released low read depth insufficient read length ENCFF034IZG bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRQ, ENCFF002DRU, ENCFF002DRW, ENCFF018NEO 1064081481 ENCODE Processing Pipeline 06ea27bcf7a7bfcf82e8f6039eccadbc https://www.encodeproject.org/files/ENCFF034IZG/@@download/ENCFF034IZG.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF410KJU bam alignments ENCSR706SZI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DRN, ENCFF002DRR, ENCFF002DRT, ENCFF018NEO 933549719 ENCODE Processing Pipeline 0a86a80022632d40bcd5879f504363b3 https://www.encodeproject.org/files/ENCFF410KJU/@@download/ENCFF410KJU.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF660HYV bam alignments ENCSR000AHU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZN, ENCFF001HZO, ENCFF001HZP, ENCFF001HZQ, ENCFF018NEO 814803381 ENCODE Processing Pipeline e7637dd8c18d465975cfe3b01bef9426 https://www.encodeproject.org/files/ENCFF660HYV/@@download/ENCFF660HYV.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF358KVN bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMM, ENCFF018NEO 805494614 ENCODE Processing Pipeline 6f306637b6903d5916231816d4d65a82 https://www.encodeproject.org/files/ENCFF358KVN/@@download/ENCFF358KVN.bam mm10 released low read length, low read depth ENCFF074NXM bam alignments ENCSR176BXC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMN, ENCFF018NEO 838060457 ENCODE Processing Pipeline 1ea332c1f10dd5df0912925ad68f930d https://www.encodeproject.org/files/ENCFF074NXM/@@download/ENCFF074NXM.bam mm10 released low read length, low read depth ENCFF052ZGM bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFJ, ENCFF018NEO 659889916 ENCODE Processing Pipeline bc35eff624cc36dd556837f4d8b1cee8 https://www.encodeproject.org/files/ENCFF052ZGM/@@download/ENCFF052ZGM.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF227EZO bam alignments ENCSR094TTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFE, ENCFF018NEO 934504168 ENCODE Processing Pipeline b33e0babf2d6247111365151401ade9a https://www.encodeproject.org/files/ENCFF227EZO/@@download/ENCFF227EZO.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths, low read depth, low read length, moderate library complexity ENCFF742CUI bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBR, ENCFF018NEO 596863032 ENCODE Processing Pipeline 8d5a5de237e211a394958e443c11cd2d https://www.encodeproject.org/files/ENCFF742CUI/@@download/ENCFF742CUI.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF547JWX bam alignments ENCSR000CGJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBQ, ENCFF018NEO 737514913 ENCODE Processing Pipeline 77f323397e5680a22cfc7be47669aed2 https://www.encodeproject.org/files/ENCFF547JWX/@@download/ENCFF547JWX.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF772TQZ bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAP, ENCFF018NEO 553092945 ENCODE Processing Pipeline 69d258365aca153e4ae722eab10f63f8 https://www.encodeproject.org/files/ENCFF772TQZ/@@download/ENCFF772TQZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF978LNE bam alignments ENCSR000ADT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAN, ENCFF018NEO 774410562 ENCODE Processing Pipeline 6bbd6324c87c5903d8ac91dadb2b95e4 https://www.encodeproject.org/files/ENCFF978LNE/@@download/ENCFF978LNE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF132HIM bam alignments ENCSR000AHL ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBZ, ENCFF018NEO 1592086725 ENCODE Processing Pipeline af32a687892fd7d902e796e0555610b3 https://www.encodeproject.org/files/ENCFF132HIM/@@download/ENCFF132HIM.bam mm10 released insufficient read depth, control insufficient read depth ENCFF903TSE bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUZ, ENCFF018NEO 682250924 ENCODE Processing Pipeline 38278a6409ec72ea29be3d635faa2c59 https://www.encodeproject.org/files/ENCFF903TSE/@@download/ENCFF903TSE.bam mm10 released low read length, low read depth ENCFF563TGK bam alignments ENCSR949ZLW ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZVA, ENCFF018NEO 474349835 ENCODE Processing Pipeline 2f01ae3847824ac1c25cf048aa03f34e https://www.encodeproject.org/files/ENCFF563TGK/@@download/ENCFF563TGK.bam mm10 released low read length, low read depth ENCFF120EMA bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MZM, ENCFF018NEO 569446969 ENCODE Processing Pipeline 698e043f63267df643a2911ea09e9af2 https://www.encodeproject.org/files/ENCFF120EMA/@@download/ENCFF120EMA.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF346NBG bam alignments ENCSR000AEA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MZO, ENCFF018NEO 668483774 ENCODE Processing Pipeline bf81ee56d77e1f4b7c75db5f7a097ecd https://www.encodeproject.org/files/ENCFF346NBG/@@download/ENCFF346NBG.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF077YVV bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF001ZSN, ENCFF018NEO 1000412557 ENCODE Processing Pipeline a1dc036311b0174cf60b889a4670f947 https://www.encodeproject.org/files/ENCFF077YVV/@@download/ENCFF077YVV.bam mm10 released low read length control insufficient read depth ENCFF314IHA bam alignments ENCSR466ZQC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF001ZSL, ENCFF018NEO 1023771838 ENCODE Processing Pipeline 150b27abc8665ef0011719cde62dc235 https://www.encodeproject.org/files/ENCFF314IHA/@@download/ENCFF314IHA.bam mm10 released low read length control insufficient read depth ENCFF790KRK bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 254614431 ENCODE Processing Pipeline e1ec01bb207eb33d693da82e2890c587 https://www.encodeproject.org/files/ENCFF790KRK/@@download/ENCFF790KRK.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF150WRV bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 250266703 ENCODE Processing Pipeline 7dcffb4a6f8c061558dc42a1b97cec12 https://www.encodeproject.org/files/ENCFF150WRV/@@download/ENCFF150WRV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF259LKI bam alignments ENCSR000AIW ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIF, ENCFF018NEO 804177197 ENCODE Processing Pipeline 5907c8dd62c5756b524a1d29e072b453 https://www.encodeproject.org/files/ENCFF259LKI/@@download/ENCFF259LKI.bam mm10 released control low read depth, low read depth ENCFF586WVO bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 2 36 ENCFF002BGN, ENCFF002CCC, ENCFF018NEO 1032712262 ENCODE Processing Pipeline 05a4d7f9afbe850b014664b01f45ff07 https://www.encodeproject.org/files/ENCFF586WVO/@@download/ENCFF586WVO.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF386JWC bam alignments ENCSR099BYW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-08 ENCODE 1 36 ENCFF002BGZ, ENCFF018NEO 2089822634 ENCODE Processing Pipeline 9666762de7e845f857a44475b5dc3b3c https://www.encodeproject.org/files/ENCFF386JWC/@@download/ENCFF386JWC.bam mm10 released low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF828PDR bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVW, ENCFF018NEO 1005907631 ENCODE Processing Pipeline 0b3006fa0a178e52eb0f1010cf803a04 https://www.encodeproject.org/files/ENCFF828PDR/@@download/ENCFF828PDR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF555EIU bam alignments ENCSR463GJL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVN, ENCFF002BVS, ENCFF018NEO 1354952559 ENCODE Processing Pipeline dd7368185d348e59795aa7ebc5314e10 https://www.encodeproject.org/files/ENCFF555EIU/@@download/ENCFF555EIU.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF360FFU bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 835431405 ENCODE Processing Pipeline 1e724e319d509081e6a1af03cc92de0e https://www.encodeproject.org/files/ENCFF360FFU/@@download/ENCFF360FFU.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF541LRE bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1263858982 ENCODE Processing Pipeline 456dba2a36b15d845363c2522d0c85fb https://www.encodeproject.org/files/ENCFF541LRE/@@download/ENCFF541LRE.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF955BBU bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTF, ENCFF018NEO 1162070194 ENCODE Processing Pipeline 269be94afd1dffad51c01c15d315df0a https://www.encodeproject.org/files/ENCFF955BBU/@@download/ENCFF955BBU.bam mm10 released low read length ENCFF893XVE bam alignments ENCSR502WUI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTE, ENCFF018NEO 1053075451 ENCODE Processing Pipeline c61ededfeeff3fec0fea518002d217a7 https://www.encodeproject.org/files/ENCFF893XVE/@@download/ENCFF893XVE.bam mm10 released low read length ENCFF882VKU bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1243830020 ENCODE Processing Pipeline 769466936a01a64c0358cf6db3dab3db https://www.encodeproject.org/files/ENCFF882VKU/@@download/ENCFF882VKU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF951IPP bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 3507576585 ENCODE Processing Pipeline 3f7172bd8823d6cf6986e411dee9c1ad https://www.encodeproject.org/files/ENCFF951IPP/@@download/ENCFF951IPP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF576RCG bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF765UUO 1457728914 ENCODE Processing Pipeline 01ffa4590ddcffdc6f50b95b7c0e02e3 https://www.encodeproject.org/files/ENCFF576RCG/@@download/ENCFF576RCG.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF277PFV bam alignments ENCSR576XBN ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF517UPB 1108005159 ENCODE Processing Pipeline 30153e7a6c47775d485012c949a5dec6 https://www.encodeproject.org/files/ENCFF277PFV/@@download/ENCFF277PFV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF206APZ bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 388544918 ENCODE Processing Pipeline 51f2648eb0e121be2e73668e87f7a558 https://www.encodeproject.org/files/ENCFF206APZ/@@download/ENCFF206APZ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF251WMT bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 384417298 ENCODE Processing Pipeline 0690ff1011df2eb824e7a23413a21fd5 https://www.encodeproject.org/files/ENCFF251WMT/@@download/ENCFF251WMT.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF854DPK bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTI, ENCFF018NEO, ENCFF954LPU 1100632064 ENCODE Processing Pipeline 8c38f114330953446df821dfc887eeb4 https://www.encodeproject.org/files/ENCFF854DPK/@@download/ENCFF854DPK.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF330LCP bam alignments ENCSR944XPB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTL, ENCFF018NEO, ENCFF107TLH 1231269315 ENCODE Processing Pipeline 84d00a59b0557c7d746e855af5731de8 https://www.encodeproject.org/files/ENCFF330LCP/@@download/ENCFF330LCP.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF969YRT bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 659552769 ENCODE Processing Pipeline 1a19668d7e8269b91f6647ea3ccbc6d3 https://www.encodeproject.org/files/ENCFF969YRT/@@download/ENCFF969YRT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF752EYZ bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 586188844 ENCODE Processing Pipeline fa8f55d35fe8e22b98e517b661062965 https://www.encodeproject.org/files/ENCFF752EYZ/@@download/ENCFF752EYZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF645XPU bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KEE, ENCFF018NEO 608519625 ENCODE Processing Pipeline e826ad6c84d38b3088844d042bfddba1 https://www.encodeproject.org/files/ENCFF645XPU/@@download/ENCFF645XPU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF271EBY bam alignments ENCSR000CFO ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEI, ENCFF018NEO 755688701 ENCODE Processing Pipeline bb85fc3ca7fd71629d3bb158e833c649 https://www.encodeproject.org/files/ENCFF271EBY/@@download/ENCFF271EBY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF005SOY bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUU, ENCFF002BUZ, ENCFF018NEO 687079506 ENCODE Processing Pipeline 3620d51fa9320cca2b803482764ac4c6 https://www.encodeproject.org/files/ENCFF005SOY/@@download/ENCFF005SOY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF751EWM bam alignments ENCSR642VYW ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUP, ENCFF002BUQ, ENCFF018NEO 608468030 ENCODE Processing Pipeline bea15e8901683803bc3c84ca938b338e https://www.encodeproject.org/files/ENCFF751EWM/@@download/ENCFF751EWM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF787ZVR bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JZW, ENCFF018NEO 621290758 ENCODE Processing Pipeline a179e3470643b5567f6b5de6ecdbb342 https://www.encodeproject.org/files/ENCFF787ZVR/@@download/ENCFF787ZVR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF022DLJ bam alignments ENCSR000CFM ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JZV, ENCFF018NEO 804791615 ENCODE Processing Pipeline a9bffc251444bf01e54d25c46b92af51 https://www.encodeproject.org/files/ENCFF022DLJ/@@download/ENCFF022DLJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF205RXI bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHD, ENCFF003AGA, ENCFF018NEO 980950333 ENCODE Processing Pipeline c3698efe428a405dca5c8841b9fae64a https://www.encodeproject.org/files/ENCFF205RXI/@@download/ENCFF205RXI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF503USJ bam alignments ENCSR025AOC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHH, ENCFF018NEO 892918858 ENCODE Processing Pipeline 3a9f9f130a52b1c1d05d54f650ba1ce1 https://www.encodeproject.org/files/ENCFF503USJ/@@download/ENCFF503USJ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF639ZZX bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF320FGK 1424666427 ENCODE Processing Pipeline 6605a274bfb04f50f925b6569bdb68ee https://www.encodeproject.org/files/ENCFF639ZZX/@@download/ENCFF639ZZX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF152VCS bam alignments ENCSR604AMS ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF867UGA 1595747633 ENCODE Processing Pipeline 5f6d817883815924cd8f0758ef5bd614 https://www.encodeproject.org/files/ENCFF152VCS/@@download/ENCFF152VCS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF753EXZ bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWO, ENCFF018NEO 1025857566 ENCODE Processing Pipeline c37ee16ba5516637cad5c17a51e1537d https://www.encodeproject.org/files/ENCFF753EXZ/@@download/ENCFF753EXZ.bam mm10 released low read length ENCFF078BRI bam alignments ENCSR546ANT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWV, ENCFF018NEO 1171879184 ENCODE Processing Pipeline 94e8f7c920013302c3ff550de9d7f298 https://www.encodeproject.org/files/ENCFF078BRI/@@download/ENCFF078BRI.bam mm10 released low read length ENCFF083YAZ bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOD, ENCFF018NEO 595863653 ENCODE Processing Pipeline 444abc7ad949dc24e3f509568b20788f https://www.encodeproject.org/files/ENCFF083YAZ/@@download/ENCFF083YAZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF542RYU bam alignments ENCSR569UCG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOE, ENCFF018NEO 957728953 ENCODE Processing Pipeline e258d47001a4b11e85877e77daf1c789 https://www.encodeproject.org/files/ENCFF542RYU/@@download/ENCFF542RYU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF265GQV bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 315183523 ENCODE Processing Pipeline 6d8270688bf2441c23374d824d88410d https://www.encodeproject.org/files/ENCFF265GQV/@@download/ENCFF265GQV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF824OPU bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 292966100 ENCODE Processing Pipeline 86340943f67e7c298b28e687e12496cb https://www.encodeproject.org/files/ENCFF824OPU/@@download/ENCFF824OPU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF879YUT bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LZO, ENCFF018NEO 841217795 ENCODE Processing Pipeline 43ce4e93ba0c17e28f6d3212d4bd94eb https://www.encodeproject.org/files/ENCFF879YUT/@@download/ENCFF879YUT.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF301NHS bam alignments ENCSR000DIX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LZR, ENCFF018NEO 2652647509 ENCODE Processing Pipeline 93b2a526d133b7342edfd2328ba5e2d1 https://www.encodeproject.org/files/ENCFF301NHS/@@download/ENCFF301NHS.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, low read length, moderate library complexity biological replicates with identical biosample ENCFF876AAU bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF743ZOS, ENCFF940YTF 921080826 ENCODE Processing Pipeline 795d9a3d50992a5d6e26abaab4f22892 https://www.encodeproject.org/files/ENCFF876AAU/@@download/ENCFF876AAU.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF879FUS bam alignments ENCSR312BOK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF867UKY 1342059438 ENCODE Processing Pipeline df1f01e16208a2822ac613033b25787d https://www.encodeproject.org/files/ENCFF879FUS/@@download/ENCFF879FUS.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF392CNB bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF854PCP, ENCFF957FQA 1051700165 ENCODE Processing Pipeline 3b572598cee7946dae8e7f1f5eb460ce https://www.encodeproject.org/files/ENCFF392CNB/@@download/ENCFF392CNB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF973GPI bam alignments ENCSR427ZQB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF332BOE 1168191748 ENCODE Processing Pipeline aa544d528061e92efff021503569eba0 https://www.encodeproject.org/files/ENCFF973GPI/@@download/ENCFF973GPI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates control insufficient read depth ENCFF348WKW bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJN, ENCFF018NEO 940472894 ENCODE Processing Pipeline 68792e35aacace18e5a27ae8ac32ca51 https://www.encodeproject.org/files/ENCFF348WKW/@@download/ENCFF348WKW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF825CUB bam alignments ENCSR157LYR ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJM, ENCFF018NEO, ENCFF197UGT 1164444306 ENCODE Processing Pipeline ed46ff5111f8901bae2cc2c274962f2c https://www.encodeproject.org/files/ENCFF825CUB/@@download/ENCFF825CUB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF970ZAR bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXH, ENCFF018NEO 3147991500 ENCODE Processing Pipeline 948298c2c5f46dfaa7393b7cb5c9c11c https://www.encodeproject.org/files/ENCFF970ZAR/@@download/ENCFF970ZAR.bam mm10 released inconsistent platforms control insufficient read depth ENCFF551NBS bam alignments ENCSR000DHK ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXJ, ENCFF018NEO 3585271677 ENCODE Processing Pipeline 03ddd386e8ffaa21e0aa056664a10cda https://www.encodeproject.org/files/ENCFF551NBS/@@download/ENCFF551NBS.bam mm10 released inconsistent platforms control insufficient read depth ENCFF521BWP bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETQ, ENCFF018NEO 1216716292 ENCODE Processing Pipeline 37247190bda3ce03ecec4fb18315d740 https://www.encodeproject.org/files/ENCFF521BWP/@@download/ENCFF521BWP.bam mm10 released insufficient read depth, control insufficient read depth ENCFF956FZM bam alignments ENCSR352AWJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETP, ENCFF018NEO 991308182 ENCODE Processing Pipeline 4881ca7a90dfc8380f50ebec724a533f https://www.encodeproject.org/files/ENCFF956FZM/@@download/ENCFF956FZM.bam mm10 released insufficient read depth, control insufficient read depth ENCFF109ONM bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF107OCJ 1247375448 ENCODE Processing Pipeline a2d20102761e5633770acb200d45b27c https://www.encodeproject.org/files/ENCFF109ONM/@@download/ENCFF109ONM.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF535JYV bam alignments ENCSR398TTY ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF092HXB, ENCFF696TPX 1053014541 ENCODE Processing Pipeline 7673d1c2e45c05850424897e96435264 https://www.encodeproject.org/files/ENCFF535JYV/@@download/ENCFF535JYV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms sequencing runs labeled as technical replicates ENCFF867QFT bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MUJ, ENCFF018NEO 1218916952 ENCODE Processing Pipeline 9f544979cfd21ed50ecdc9ac1155cc22 https://www.encodeproject.org/files/ENCFF867QFT/@@download/ENCFF867QFT.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF994AUU bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MUM, ENCFF018NEO 1800337837 ENCODE Processing Pipeline 5cefe335e455c038ebb4841fe7cca782 https://www.encodeproject.org/files/ENCFF994AUU/@@download/ENCFF994AUU.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF364NET bam alignments ENCSR000DIJ ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MUP, ENCFF018NEO 2906150930 ENCODE Processing Pipeline ba2e07620ea0e634c7cf762d9fa780b8 https://www.encodeproject.org/files/ENCFF364NET/@@download/ENCFF364NET.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF073OZT bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJF, ENCFF018NEO 882645702 ENCODE Processing Pipeline b36d90b0ab810539cb11a77b3241af23 https://www.encodeproject.org/files/ENCFF073OZT/@@download/ENCFF073OZT.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF940TTQ bam alignments ENCSR080GQM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJD, ENCFF018NEO, ENCFF564ZSR, ENCFF725TOW 1252363075 ENCODE Processing Pipeline a9c81ff8a7172969e5f602ac9a743cca https://www.encodeproject.org/files/ENCFF940TTQ/@@download/ENCFF940TTQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF839EWF bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF962NKI 3356001465 ENCODE Processing Pipeline 7a86f1033956d054df6bb9b8ef868f71 https://www.encodeproject.org/files/ENCFF839EWF/@@download/ENCFF839EWF.bam mm10 released inconsistent platforms ENCFF156UJE bam alignments ENCSR339LMJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF144XFB 3357440978 ENCODE Processing Pipeline b1864f56f48e2437204ce1de2f18c015 https://www.encodeproject.org/files/ENCFF156UJE/@@download/ENCFF156UJE.bam mm10 released inconsistent platforms ENCFF536XZS bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 558104343 ENCODE Processing Pipeline 2a01744a664a8d90ec6baf5379130353 https://www.encodeproject.org/files/ENCFF536XZS/@@download/ENCFF536XZS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF859PAZ bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 487219227 ENCODE Processing Pipeline db92754b42ace5ad7077962b9276d5ad https://www.encodeproject.org/files/ENCFF859PAZ/@@download/ENCFF859PAZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF555JZF bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 912899218 ENCODE Processing Pipeline df09e1404dd1ce3a4c0b40dbd7a5778c https://www.encodeproject.org/files/ENCFF555JZF/@@download/ENCFF555JZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117NUU bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1000565370 ENCODE Processing Pipeline 75f917563cd9668f886f79fd94372d67 https://www.encodeproject.org/files/ENCFF117NUU/@@download/ENCFF117NUU.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF516FZI bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 519238766 ENCODE Processing Pipeline 6142c7e75e870d7c8f68d406e5c6fbfa https://www.encodeproject.org/files/ENCFF516FZI/@@download/ENCFF516FZI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF617FBG bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 433686094 ENCODE Processing Pipeline ab27875b64bf10edf2aebdfc822a2b66 https://www.encodeproject.org/files/ENCFF617FBG/@@download/ENCFF617FBG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF986OKG bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 164858010 ENCODE Processing Pipeline 9effa8ed0e16b5901dab0e3e9155ba25 https://www.encodeproject.org/files/ENCFF986OKG/@@download/ENCFF986OKG.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF351NWX bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 437122527 ENCODE Processing Pipeline fe49ddc32ea2bf94abde9dce6316562e https://www.encodeproject.org/files/ENCFF351NWX/@@download/ENCFF351NWX.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF142TWS bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 587664771 ENCODE Processing Pipeline b00357078102d3a0f9dec73bcc32a2f1 https://www.encodeproject.org/files/ENCFF142TWS/@@download/ENCFF142TWS.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF538JPD bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 521375721 ENCODE Processing Pipeline 8562f0075ca06766370a2ece9bf64388 https://www.encodeproject.org/files/ENCFF538JPD/@@download/ENCFF538JPD.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF473CVH bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTO, ENCFF018NEO 408942819 ENCODE Processing Pipeline abe3dbc61059b6e82bbc7bed42d6f143 https://www.encodeproject.org/files/ENCFF473CVH/@@download/ENCFF473CVH.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF980FRR bam alignments ENCSR000CCS ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTQ, ENCFF018NEO 524364835 ENCODE Processing Pipeline d575c9be2f39d9489fb6fb977896939d https://www.encodeproject.org/files/ENCFF980FRR/@@download/ENCFF980FRR.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF255XXC bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APR, ENCFF018NEO 1072230033 ENCODE Processing Pipeline e089452fdff9c1595568336fccafc3e7 https://www.encodeproject.org/files/ENCFF255XXC/@@download/ENCFF255XXC.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF921XQX bam alignments ENCSR329ZEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APS, ENCFF018NEO 1134041414 ENCODE Processing Pipeline 567d51040990540b94a623d777ecfecf https://www.encodeproject.org/files/ENCFF921XQX/@@download/ENCFF921XQX.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF008PKI bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF610QKS 2115335647 ENCODE Processing Pipeline 76e40d681f5095d151139e72f11c849f https://www.encodeproject.org/files/ENCFF008PKI/@@download/ENCFF008PKI.bam mm10 released inconsistent platforms ENCFF871CYV bam alignments ENCSR571HOT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF419ANT 1903686676 ENCODE Processing Pipeline 0748395ffab6a2be8a00bfc676d4177c https://www.encodeproject.org/files/ENCFF871CYV/@@download/ENCFF871CYV.bam mm10 released inconsistent platforms ENCFF128HND bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF291TCR 1582672423 ENCODE Processing Pipeline 51694135fe1a491756b8e8e1c11dad16 https://www.encodeproject.org/files/ENCFF128HND/@@download/ENCFF128HND.bam mm10 released inconsistent platforms ENCFF561SYL bam alignments ENCSR639KSW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF090ODQ 1669456855 ENCODE Processing Pipeline 7e9ed53a08f6809ec5eec9ffdd90b8f9 https://www.encodeproject.org/files/ENCFF561SYL/@@download/ENCFF561SYL.bam mm10 released inconsistent platforms ENCFF927XSY bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTS, ENCFF018NEO 991704758 ENCODE Processing Pipeline 1341e8cc050e70397ccef48ddba98b3d https://www.encodeproject.org/files/ENCFF927XSY/@@download/ENCFF927XSY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF006ZGX bam alignments ENCSR244KCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUB, ENCFF018NEO, ENCFF453CWO 1121683852 ENCODE Processing Pipeline 002469d721f8bf72db5f0bb62ed5922f https://www.encodeproject.org/files/ENCFF006ZGX/@@download/ENCFF006ZGX.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF767YIB bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF499XLQ 1491837366 ENCODE Processing Pipeline c450fcb73ca3fa74de20a330d2bbb360 https://www.encodeproject.org/files/ENCFF767YIB/@@download/ENCFF767YIB.bam mm10 released inconsistent platforms ENCFF723LHU bam alignments ENCSR332UCY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF199TIW 1586345848 ENCODE Processing Pipeline 3eccea9637e5fa828823a04148293554 https://www.encodeproject.org/files/ENCFF723LHU/@@download/ENCFF723LHU.bam mm10 released inconsistent platforms ENCFF946SFS bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSK, ENCFF002DSL, ENCFF018NEO 1248220643 ENCODE Processing Pipeline ce31ccd4825f417e96201420d7b243a3 https://www.encodeproject.org/files/ENCFF946SFS/@@download/ENCFF946SFS.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF102LST bam alignments ENCSR556DLJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSW, ENCFF018NEO 1393703516 ENCODE Processing Pipeline 820a938519c15ab63addf6606bebb7b7 https://www.encodeproject.org/files/ENCFF102LST/@@download/ENCFF102LST.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF714EXR bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AET, ENCFF018NEO 1092266120 ENCODE Processing Pipeline 982ac251ac66a4d23478774a1d5ffbdb https://www.encodeproject.org/files/ENCFF714EXR/@@download/ENCFF714EXR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF589HQA bam alignments ENCSR054JHZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AEV, ENCFF018NEO 1328509348 ENCODE Processing Pipeline 2d902b320ae92be91bcd281c49f80cfb https://www.encodeproject.org/files/ENCFF589HQA/@@download/ENCFF589HQA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF209XZQ bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 733770678 ENCODE Processing Pipeline 4fc9f869082dd3a8580586f666a88217 https://www.encodeproject.org/files/ENCFF209XZQ/@@download/ENCFF209XZQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF178CJO bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 506585997 ENCODE Processing Pipeline 2ea2fda4b76b94993b4e9ec0232bf10d https://www.encodeproject.org/files/ENCFF178CJO/@@download/ENCFF178CJO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF543ZVH bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001JYM, ENCFF018NEO 371438728 ENCODE Processing Pipeline 827fbe1039993ccaae6ea193447bf102 https://www.encodeproject.org/files/ENCFF543ZVH/@@download/ENCFF543ZVH.bam mm10 released low read length insufficient read depth ENCFF249NVZ bam alignments ENCSR000CAS ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001JYN, ENCFF018NEO 384418375 ENCODE Processing Pipeline 5b1933b11fdc09906369bcd2b4f1de58 https://www.encodeproject.org/files/ENCFF249NVZ/@@download/ENCFF249NVZ.bam mm10 released low read length insufficient read depth ENCFF371CWA bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KSH, ENCFF018NEO 594300085 ENCODE Processing Pipeline 583614381f6cc9a276726d7cecc31f95 https://www.encodeproject.org/files/ENCFF371CWA/@@download/ENCFF371CWA.bam mm10 released low read length, low read depth insufficient read depth ENCFF543ZOX bam alignments ENCSR000CCG ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KSJ, ENCFF018NEO 400552795 ENCODE Processing Pipeline d892cf60367968d6961efe9a0dc99d46 https://www.encodeproject.org/files/ENCFF543ZOX/@@download/ENCFF543ZOX.bam mm10 released low read length, low read depth insufficient read depth ENCFF622PSB bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF304ZTQ, ENCFF654QVB 925114633 ENCODE Processing Pipeline 7e66ebbddf1381e39e8dad1bf4aacfe7 https://www.encodeproject.org/files/ENCFF622PSB/@@download/ENCFF622PSB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF363APO bam alignments ENCSR821GHK ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF174GDI 1015333772 ENCODE Processing Pipeline dca11e088122ab09abcb446d482d4ead https://www.encodeproject.org/files/ENCFF363APO/@@download/ENCFF363APO.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF668WPD bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF479WIO 993916249 ENCODE Processing Pipeline ed390180f698ee59847537be74e196ac https://www.encodeproject.org/files/ENCFF668WPD/@@download/ENCFF668WPD.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF989HCI bam alignments ENCSR630AOU ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF085DOW 1101491051 ENCODE Processing Pipeline 4f3fae85c3bee7057be4268771fc57af https://www.encodeproject.org/files/ENCFF989HCI/@@download/ENCFF989HCI.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF692PLL bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUJ, ENCFF018NEO 890408608 ENCODE Processing Pipeline 28b27a4bf03e67905d56c693b25aaf1f https://www.encodeproject.org/files/ENCFF692PLL/@@download/ENCFF692PLL.bam mm10 released low read length, low read depth ENCFF430JSU bam alignments ENCSR749PZB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUL, ENCFF018NEO 1001522018 ENCODE Processing Pipeline f65f4a8bd484144ff462f8a09dc49fa1 https://www.encodeproject.org/files/ENCFF430JSU/@@download/ENCFF430JSU.bam mm10 released low read length, low read depth ENCFF978DEK bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF510CAN 1603431609 ENCODE Processing Pipeline b7416c55f4ef006fe67f191af616c743 https://www.encodeproject.org/files/ENCFF978DEK/@@download/ENCFF978DEK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF292UUU bam alignments ENCSR647OTD ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF771ZUD 1639221924 ENCODE Processing Pipeline eda08b85b54d3c36715f2cce05d1499a https://www.encodeproject.org/files/ENCFF292UUU/@@download/ENCFF292UUU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF450RZA bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 1988137415 ENCODE Processing Pipeline 43e644c19c622915082510f8b2f8199a https://www.encodeproject.org/files/ENCFF450RZA/@@download/ENCFF450RZA.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF684OCY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 2470498456 ENCODE Processing Pipeline c878852ee6e7f82ec432f20e50496c9e https://www.encodeproject.org/files/ENCFF684OCY/@@download/ENCFF684OCY.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF410JXV bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESI, ENCFF018NEO, ENCFF397BST 1569077803 ENCODE Processing Pipeline bcc32cd66a84cba03bf86e9e85713eb2 https://www.encodeproject.org/files/ENCFF410JXV/@@download/ENCFF410JXV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF474XKX bam alignments ENCSR135QMP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESG, ENCFF006WYA, ENCFF018NEO 1465593708 ENCODE Processing Pipeline a0e31a83e68172e51e131b5627e433c8 https://www.encodeproject.org/files/ENCFF474XKX/@@download/ENCFF474XKX.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF427PQW bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 439870312 ENCODE Processing Pipeline 57083d80ac771a7696ffacdfabe8675f https://www.encodeproject.org/files/ENCFF427PQW/@@download/ENCFF427PQW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF148BGJ bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1174575879 ENCODE Processing Pipeline 68acd36887909bd8ae3597772976d9a0 https://www.encodeproject.org/files/ENCFF148BGJ/@@download/ENCFF148BGJ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF728RIQ bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHQ, ENCFF018NEO 750539285 ENCODE Processing Pipeline d2f361aa8b6e81d42352530a1d713107 https://www.encodeproject.org/files/ENCFF728RIQ/@@download/ENCFF728RIQ.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF349DCQ bam alignments ENCSR000CEK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHY, ENCFF018NEO 2323483595 ENCODE Processing Pipeline 137e6f292a1a406953a1e3198e9a0489 https://www.encodeproject.org/files/ENCFF349DCQ/@@download/ENCFF349DCQ.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF675TIA bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFX, ENCFF018NEO 928246752 ENCODE Processing Pipeline 4254352b1640997890e1dcd12049c3f1 https://www.encodeproject.org/files/ENCFF675TIA/@@download/ENCFF675TIA.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF585VGP bam alignments ENCSR457HDY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGE, ENCFF018NEO 1042780974 ENCODE Processing Pipeline b94c7326cf696dec3bb8d04a009ce361 https://www.encodeproject.org/files/ENCFF585VGP/@@download/ENCFF585VGP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF262EEH bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KIL, ENCFF018NEO 511138101 ENCODE Processing Pipeline a3c9a7e0cfbc376d49fd4e8c6ad69f08 https://www.encodeproject.org/files/ENCFF262EEH/@@download/ENCFF262EEH.bam mm10 released low read length, low read depth insufficient read depth ENCFF465PJQ bam alignments ENCSR000CAV ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIM, ENCFF018NEO 354135641 ENCODE Processing Pipeline b48764707ef9358ea9da15777877ab9a https://www.encodeproject.org/files/ENCFF465PJQ/@@download/ENCFF465PJQ.bam mm10 released low read length, low read depth insufficient read depth ENCFF383IWZ bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSM, ENCFF018NEO 748074240 ENCODE Processing Pipeline 2755b89175dac5164582621a3691a259 https://www.encodeproject.org/files/ENCFF383IWZ/@@download/ENCFF383IWZ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF676LVI bam alignments ENCSR000DIV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSW, ENCFF018NEO 4458822767 ENCODE Processing Pipeline 4d8f5b0eb60ae24c7f16a629225e27bd https://www.encodeproject.org/files/ENCFF676LVI/@@download/ENCFF676LVI.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF740IAL bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJS, ENCFF018NEO 1106169370 ENCODE Processing Pipeline 68a9d46cc82ad414ef6d0b90585baee2 https://www.encodeproject.org/files/ENCFF740IAL/@@download/ENCFF740IAL.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF080ZOV bam alignments ENCSR825OWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJT, ENCFF018NEO 1060055527 ENCODE Processing Pipeline 97277b1b368f251bdae2982cb37bd464 https://www.encodeproject.org/files/ENCFF080ZOV/@@download/ENCFF080ZOV.bam mm10 released control low read depth, antibody characterized with exemption insufficient read depth ENCFF061WVR bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 449095333 ENCODE Processing Pipeline 86018524d1abbaffcf30826a612cdcea https://www.encodeproject.org/files/ENCFF061WVR/@@download/ENCFF061WVR.bam mm10 released low read length insufficient read depth ENCFF285RBT bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 208725304 ENCODE Processing Pipeline 4576fb73270b4e92a1eb9d262944317a https://www.encodeproject.org/files/ENCFF285RBT/@@download/ENCFF285RBT.bam mm10 released low read length insufficient read depth ENCFF540MLY bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQJ, ENCFF018NEO 582965762 ENCODE Processing Pipeline 543b56ba72ac032115d9766971524394 https://www.encodeproject.org/files/ENCFF540MLY/@@download/ENCFF540MLY.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF386HMH bam alignments ENCSR000CEU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQN, ENCFF018NEO 533439395 ENCODE Processing Pipeline 1614a0909be5f641b20515ebfe10dedc https://www.encodeproject.org/files/ENCFF386HMH/@@download/ENCFF386HMH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth severe bottlenecking, poor library complexity, control insufficient read depth ENCFF562EBE bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJV, ENCFF018NEO, ENCFF623QLF 1126616268 ENCODE Processing Pipeline 6dc56e2f784db8c539980ddcb2e54b45 https://www.encodeproject.org/files/ENCFF562EBE/@@download/ENCFF562EBE.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF158KCF bam alignments ENCSR335WME ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJX, ENCFF015KEE, ENCFF018NEO 1100627279 ENCODE Processing Pipeline 925772e67cf89e62400733bead4961d7 https://www.encodeproject.org/files/ENCFF158KCF/@@download/ENCFF158KCF.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF262IER bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWL, ENCFF018NEO 1039171006 ENCODE Processing Pipeline 5fb638c79eb3d9cc6238649e5aadec9a https://www.encodeproject.org/files/ENCFF262IER/@@download/ENCFF262IER.bam mm10 released low read length ENCFF268SBZ bam alignments ENCSR802RET ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWN, ENCFF018NEO 1059443478 ENCODE Processing Pipeline ae9922d3f22e6cf24d282c5de5198b29 https://www.encodeproject.org/files/ENCFF268SBZ/@@download/ENCFF268SBZ.bam mm10 released low read length ENCFF092ZOE bam alignments ENCSR645ZNG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF317EHD 1414154227 ENCODE Processing Pipeline f01ee73ce1fd0de2b4fa3a2232071463 https://www.encodeproject.org/files/ENCFF092ZOE/@@download/ENCFF092ZOE.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF247SZV bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1205781081 ENCODE Processing Pipeline b47532b1c7381ba3221be3db444836f7 https://www.encodeproject.org/files/ENCFF247SZV/@@download/ENCFF247SZV.bam mm10 released low read length, inconsistent target of control experiment ENCFF717CZQ bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 977972685 ENCODE Processing Pipeline dac2bd715902766aee0af291e4d30622 https://www.encodeproject.org/files/ENCFF717CZQ/@@download/ENCFF717CZQ.bam mm10 released low read length, inconsistent target of control experiment ENCFF322QGS bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF716OXJ 1470320631 ENCODE Processing Pipeline fa15b7ba10eab071471bf736ceb3f4db https://www.encodeproject.org/files/ENCFF322QGS/@@download/ENCFF322QGS.bam mm10 released mild to moderate bottlenecking ENCFF524ZFV bam alignments ENCSR136GMT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF833RGU 1394683955 ENCODE Processing Pipeline fde900ebfeb469005f32ed7f325a1bac https://www.encodeproject.org/files/ENCFF524ZFV/@@download/ENCFF524ZFV.bam mm10 released mild to moderate bottlenecking ENCFF265AMZ bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 332320622 ENCODE Processing Pipeline 573fbb302715f284b0e2d4c90d6dbf0f https://www.encodeproject.org/files/ENCFF265AMZ/@@download/ENCFF265AMZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF147QPL bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 463563626 ENCODE Processing Pipeline 046232a0d2bb8b0ec357f41292d6ed1b https://www.encodeproject.org/files/ENCFF147QPL/@@download/ENCFF147QPL.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF267VFW bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIV, ENCFF018NEO 862472007 ENCODE Processing Pipeline 36d032e0e1522229b550c46fdeca4ece https://www.encodeproject.org/files/ENCFF267VFW/@@download/ENCFF267VFW.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF711MOH bam alignments ENCSR362PBD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIW, ENCFF018NEO 1154749869 ENCODE Processing Pipeline 753d2942a205c45b6e5872199da6dae8 https://www.encodeproject.org/files/ENCFF711MOH/@@download/ENCFF711MOH.bam mm10 released low read length, mixed read lengths insufficient read depth ENCFF731GHU bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF269FRL 2027142848 ENCODE Processing Pipeline a20ac62852c76736ca29b652204237f1 https://www.encodeproject.org/files/ENCFF731GHU/@@download/ENCFF731GHU.bam mm10 released ENCFF441SPC bam alignments ENCSR764UIE ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF095COJ 2144580925 ENCODE Processing Pipeline 76f824110bc2b92c117ee8b589c4498b https://www.encodeproject.org/files/ENCFF441SPC/@@download/ENCFF441SPC.bam mm10 released ENCFF604WSX bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 836383482 ENCODE Processing Pipeline b63eb2d07cca445f32af232802b9d6f1 https://www.encodeproject.org/files/ENCFF604WSX/@@download/ENCFF604WSX.bam mm10 released low read length, inconsistent target of control experiment ENCFF344JSI bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 850474686 ENCODE Processing Pipeline 37cd6fececc39eaecf25515f3dfdfdd9 https://www.encodeproject.org/files/ENCFF344JSI/@@download/ENCFF344JSI.bam mm10 released low read length, inconsistent target of control experiment ENCFF224PSG bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF189MMG 2482514314 ENCODE Processing Pipeline 12f37893a5ffd40d0c85606da70ebfa7 https://www.encodeproject.org/files/ENCFF224PSG/@@download/ENCFF224PSG.bam mm10 released mild to moderate bottlenecking ENCFF492PMM bam alignments ENCSR375RUA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF499UPI 2366280403 ENCODE Processing Pipeline 772dbeae7ecebc2041f8e35ad504278f https://www.encodeproject.org/files/ENCFF492PMM/@@download/ENCFF492PMM.bam mm10 released mild to moderate bottlenecking ENCFF848DSS bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF198YRQ 2129536679 ENCODE Processing Pipeline e96a3f495c139c859eab20ab852faff7 https://www.encodeproject.org/files/ENCFF848DSS/@@download/ENCFF848DSS.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF567HES bam alignments ENCSR229LTY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF203BGZ 2041500430 ENCODE Processing Pipeline 985d23afc61e5953b388e58e1b74b5a1 https://www.encodeproject.org/files/ENCFF567HES/@@download/ENCFF567HES.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF604NSV bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 362456918 ENCODE Processing Pipeline 63a07c288fcde35a7e370989461aa01d https://www.encodeproject.org/files/ENCFF604NSV/@@download/ENCFF604NSV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF042BFD bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 477222118 ENCODE Processing Pipeline b6725f9b1cecba0a259251280378c3d6 https://www.encodeproject.org/files/ENCFF042BFD/@@download/ENCFF042BFD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF725GBS bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KCV, ENCFF018NEO 731986099 ENCODE Processing Pipeline 61148c19c1a8b3a5f9c9eec5e0c6aa81 https://www.encodeproject.org/files/ENCFF725GBS/@@download/ENCFF725GBS.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF072JFV bam alignments ENCSR000CAI ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCT, ENCFF018NEO 1108402587 ENCODE Processing Pipeline a33780e5aadacee7d97a3f40798fbb2e https://www.encodeproject.org/files/ENCFF072JFV/@@download/ENCFF072JFV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF380FAM bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNF, ENCFF018NEO 295717088 ENCODE Processing Pipeline f938d8ae1930604f94644d44232888de https://www.encodeproject.org/files/ENCFF380FAM/@@download/ENCFF380FAM.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF087XCZ bam alignments ENCSR000CAO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNE, ENCFF018NEO 586507236 ENCODE Processing Pipeline 29df2471a13582f461001e8a29cdb301 https://www.encodeproject.org/files/ENCFF087XCZ/@@download/ENCFF087XCZ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF134IUG bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 449852591 ENCODE Processing Pipeline a18aa199b0076b0ca150def79b8a3ab1 https://www.encodeproject.org/files/ENCFF134IUG/@@download/ENCFF134IUG.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF514JHP bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 499875300 ENCODE Processing Pipeline a65cff310e8311005d644653ce8987fc https://www.encodeproject.org/files/ENCFF514JHP/@@download/ENCFF514JHP.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF724VSZ bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 330227818 ENCODE Processing Pipeline 3f6221f057eab42d2496ef8b0a5467dc https://www.encodeproject.org/files/ENCFF724VSZ/@@download/ENCFF724VSZ.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF226MZU bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 954118431 ENCODE Processing Pipeline 06e8d98901209aa8b5a1718e9214cdf4 https://www.encodeproject.org/files/ENCFF226MZU/@@download/ENCFF226MZU.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF702BLC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 713227360 ENCODE Processing Pipeline dbd2c5609d047e8c1a2429babd3712fe https://www.encodeproject.org/files/ENCFF702BLC/@@download/ENCFF702BLC.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF413NFE bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 623110394 ENCODE Processing Pipeline 0b393f3741b720708e4efa8a02967e1a https://www.encodeproject.org/files/ENCFF413NFE/@@download/ENCFF413NFE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF945SPR bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJW, ENCFF018NEO 1755104334 ENCODE Processing Pipeline 63649fa62616cb3de200c62071bde880 https://www.encodeproject.org/files/ENCFF945SPR/@@download/ENCFF945SPR.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF411CGO bam alignments ENCSR234ISO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJU, ENCFF018NEO 1497398008 ENCODE Processing Pipeline 86db4f99a6e5b11ce75bb9ae00894333 https://www.encodeproject.org/files/ENCFF411CGO/@@download/ENCFF411CGO.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF240VBR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 599735261 ENCODE Processing Pipeline f2b99ba6bb9a17175d389cc0c53d4c67 https://www.encodeproject.org/files/ENCFF240VBR/@@download/ENCFF240VBR.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF515WNW bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 676725902 ENCODE Processing Pipeline d4f99a104babf80d436da7d8b77a7c2b https://www.encodeproject.org/files/ENCFF515WNW/@@download/ENCFF515WNW.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF652LCP bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHX, ENCFF018NEO 804354208 ENCODE Processing Pipeline 740ae682a96b6929a1c4534b8c11434a https://www.encodeproject.org/files/ENCFF652LCP/@@download/ENCFF652LCP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF897EBQ bam alignments ENCSR000CAE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KHU, ENCFF018NEO 680633129 ENCODE Processing Pipeline affe1649088b403cbc78e607e6b04522 https://www.encodeproject.org/files/ENCFF897EBQ/@@download/ENCFF897EBQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF730GII bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMZ, ENCFF018NEO 885679844 ENCODE Processing Pipeline 8cc344d7405c2a4c3db24f04249fb534 https://www.encodeproject.org/files/ENCFF730GII/@@download/ENCFF730GII.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF591CDW bam alignments ENCSR000CEO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMY, ENCFF018NEO 1038095529 ENCODE Processing Pipeline 88c47f34b9f8cd0a64bb8a1d44df5f63 https://www.encodeproject.org/files/ENCFF591CDW/@@download/ENCFF591CDW.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF562JLO bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRE, ENCFF018NEO 258934394 ENCODE Processing Pipeline 0b0e3bfb63114577fbd2867d0a9a86b8 https://www.encodeproject.org/files/ENCFF562JLO/@@download/ENCFF562JLO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF804ERN bam alignments ENCSR000CET ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRD, ENCFF018NEO 553067281 ENCODE Processing Pipeline 3fb2d4eac086e17ec436ba733a40c1b7 https://www.encodeproject.org/files/ENCFF804ERN/@@download/ENCFF804ERN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, poor library complexity, control insufficient read depth ENCFF408QJU bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBK, ENCFF018NEO 970586413 ENCODE Processing Pipeline c2a4c833a12fd749a59279d1b21d0d3f https://www.encodeproject.org/files/ENCFF408QJU/@@download/ENCFF408QJU.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF774DMF bam alignments ENCSR000DIY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBU, ENCFF018NEO 3440814145 ENCODE Processing Pipeline 6b50e4785346dc41ba237014b21cb244 https://www.encodeproject.org/files/ENCFF774DMF/@@download/ENCFF774DMF.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF241INM bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 741873023 ENCODE Processing Pipeline aa61c1bb71a6d5d3194d84852ad3769e https://www.encodeproject.org/files/ENCFF241INM/@@download/ENCFF241INM.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF022TYB bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 603222105 ENCODE Processing Pipeline 477dadbe291b8975b74702ab9a7cdc90 https://www.encodeproject.org/files/ENCFF022TYB/@@download/ENCFF022TYB.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF697QBG bam alignments ENCSR389SQZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF770PBO 1264356128 ENCODE Processing Pipeline 2aad9ea6e8bf8c057bf802f6d78894e8 https://www.encodeproject.org/files/ENCFF697QBG/@@download/ENCFF697QBG.bam mm10 released insufficient read depth for broad peaks control ENCFF812TBN bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 807345030 ENCODE Processing Pipeline 70a5235089f57eea2245dc746106137f https://www.encodeproject.org/files/ENCFF812TBN/@@download/ENCFF812TBN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF906IPW bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 657128090 ENCODE Processing Pipeline 3ff3f8762053189bc31bc5b5deb96fe3 https://www.encodeproject.org/files/ENCFF906IPW/@@download/ENCFF906IPW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF538PLQ bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 809379754 ENCODE Processing Pipeline 58facf9f934b37fd7e94374e3e20ef2c https://www.encodeproject.org/files/ENCFF538PLQ/@@download/ENCFF538PLQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF669IDD bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 637979380 ENCODE Processing Pipeline c20d065504a33aa9a664a9004e1e3f57 https://www.encodeproject.org/files/ENCFF669IDD/@@download/ENCFF669IDD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF528ZVN bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRS, ENCFF018NEO, ENCFF123MKU 1091401338 ENCODE Processing Pipeline 7b59fd618dd82984938e3fd33746dc05 https://www.encodeproject.org/files/ENCFF528ZVN/@@download/ENCFF528ZVN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF695PCS bam alignments ENCSR975QSF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRT, ENCFF018NEO, ENCFF952SFK 1191710914 ENCODE Processing Pipeline a2656e0a2d08f379aaf1f65501127aa7 https://www.encodeproject.org/files/ENCFF695PCS/@@download/ENCFF695PCS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF043ANB bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSM, ENCFF018NEO 396977856 ENCODE Processing Pipeline cde9040d493678142493c3c96f3cc502 https://www.encodeproject.org/files/ENCFF043ANB/@@download/ENCFF043ANB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF395RKE bam alignments ENCSR000CDP ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSQ, ENCFF018NEO 430663849 ENCODE Processing Pipeline 620f5114b083ee05c36b2a5bba5dad25 https://www.encodeproject.org/files/ENCFF395RKE/@@download/ENCFF395RKE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF145YHD bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 691803605 ENCODE Processing Pipeline d5967270938634d2c43b9e70780fb8b6 https://www.encodeproject.org/files/ENCFF145YHD/@@download/ENCFF145YHD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF945QLN bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 604631045 ENCODE Processing Pipeline 4de3b81ce969c0711f5644ab890f7bb2 https://www.encodeproject.org/files/ENCFF945QLN/@@download/ENCFF945QLN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF701FHJ bam alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF653ZDW 1373552834 ENCODE Processing Pipeline 757732dfaa90c19941a4afd4a5fa43fa https://www.encodeproject.org/files/ENCFF701FHJ/@@download/ENCFF701FHJ.bam mm10 released mild to moderate bottlenecking ENCFF080WAD bam alignments ENCSR703TBR ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865AMT 1422608119 ENCODE Processing Pipeline 8fb2512c28ac478d068483afe04bf643 https://www.encodeproject.org/files/ENCFF080WAD/@@download/ENCFF080WAD.bam mm10 released mild to moderate bottlenecking ENCFF853OMH bam alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 50 ENCFF018NEO, ENCFF223XYA 1786194808 ENCODE Processing Pipeline 701bc51ba9b3ed55ed8ff3ea43b60caf https://www.encodeproject.org/files/ENCFF853OMH/@@download/ENCFF853OMH.bam mm10 released mild to moderate bottlenecking ENCFF013BFX bam alignments ENCSR779MSI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 50 ENCFF018NEO, ENCFF058OWQ 1350989899 ENCODE Processing Pipeline 31416db96333b0242e7e3375b427fcd5 https://www.encodeproject.org/files/ENCFF013BFX/@@download/ENCFF013BFX.bam mm10 released mild to moderate bottlenecking ENCFF826GUO bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF257DBI, ENCFF768HAN 1854163080 ENCODE Processing Pipeline def0880caec2d8d006488e5f1a416737 https://www.encodeproject.org/files/ENCFF826GUO/@@download/ENCFF826GUO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF027UTM bam alignments ENCSR479LFP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF707YKI 1277018492 ENCODE Processing Pipeline c8153c2e5099b3ae2e334c85ac5cd106 https://www.encodeproject.org/files/ENCFF027UTM/@@download/ENCFF027UTM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF164BCI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1145124183 ENCODE Processing Pipeline 1e9280a53f99f767bd2c49c49d0a6432 https://www.encodeproject.org/files/ENCFF164BCI/@@download/ENCFF164BCI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF262NGI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 818813553 ENCODE Processing Pipeline bd23e3d0832e0da66339261d251459ee https://www.encodeproject.org/files/ENCFF262NGI/@@download/ENCFF262NGI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF173DDT bam alignments ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF782XDY 939007698 Christina Leslie, MSKCC 5a67d14cf78349cb4023c2b219f19a5c https://www.encodeproject.org/files/ENCFF173DDT/@@download/ENCFF173DDT.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF800XUG bam alignments ENCSR364HOR ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF545VQR 1037922441 Christina Leslie, MSKCC 9720a6f77a8967b4b843cc0238fbc236 https://www.encodeproject.org/files/ENCFF800XUG/@@download/ENCFF800XUG.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF887PHY bam alignments ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF942XUX 772643198 Christina Leslie, MSKCC 29164b784f55e7e847d896785880d0fc https://www.encodeproject.org/files/ENCFF887PHY/@@download/ENCFF887PHY.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF093UMJ bam alignments ENCSR874WRY ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF380RAF 706225410 Christina Leslie, MSKCC a6a39f5691307f8da225150c513f552d https://www.encodeproject.org/files/ENCFF093UMJ/@@download/ENCFF093UMJ.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF738GHN bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFC, ENCFF018NEO 3722173359 ENCODE Processing Pipeline 242d15fadb550ecf01980177fdada4ec https://www.encodeproject.org/files/ENCFF738GHN/@@download/ENCFF738GHN.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF515HLC bam alignments ENCSR000DHF ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFA, ENCFF018NEO 3250223858 ENCODE Processing Pipeline dd746926208637017b68ff96bbef51bd https://www.encodeproject.org/files/ENCFF515HLC/@@download/ENCFF515HLC.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF771XXN bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZHF, ENCFF018NEO 1491334893 ENCODE Processing Pipeline e3b4ce691f69acf5f5e1ce33528b523f https://www.encodeproject.org/files/ENCFF771XXN/@@download/ENCFF771XXN.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF264MAW bam alignments ENCSR857MYS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZHD, ENCFF018NEO 1535950103 ENCODE Processing Pipeline 3ed51027a39e86d1ffe4705ca9c94cdf https://www.encodeproject.org/files/ENCFF264MAW/@@download/ENCFF264MAW.bam mm10 released low read length, control low read depth experiment not submitted to GEO ENCFF166JZW bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 1 45 ENCFF001ZGS, ENCFF018NEO 2001617533 ENCODE Processing Pipeline 284dcf48b75a9c5999dd6ac306baaec1 https://www.encodeproject.org/files/ENCFF166JZW/@@download/ENCFF166JZW.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF551OFV bam alignments ENCSR032JUI ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2014-02-10 ENCODE 2 45 ENCFF001ZGU, ENCFF018NEO 2125530258 ENCODE Processing Pipeline 5cfac2ef004b3990b0dce8565e58d517 https://www.encodeproject.org/files/ENCFF551OFV/@@download/ENCFF551OFV.bam mm10 released low read length, control low read depth, low read depth experiment not submitted to GEO ENCFF749WCS bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXW, ENCFF018NEO 777186155 ENCODE Processing Pipeline c3bab1cea1e2f9e013fbb5ae8d7c4c5a https://www.encodeproject.org/files/ENCFF749WCS/@@download/ENCFF749WCS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF397HOQ bam alignments ENCSR817FFF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF118FEW, ENCFF249RWY, ENCFF482JNU 583914160 ENCODE Processing Pipeline b4fd4c9e7085a29639c072e7e9b5c9c2 https://www.encodeproject.org/files/ENCFF397HOQ/@@download/ENCFF397HOQ.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF658UBJ bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BYB, ENCFF018NEO 1003572125 ENCODE Processing Pipeline 03fb3c3cf468ad177f23c30747aa98cd https://www.encodeproject.org/files/ENCFF658UBJ/@@download/ENCFF658UBJ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF025IEP bam alignments ENCSR012BVY ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BYC, ENCFF018NEO 1093315387 ENCODE Processing Pipeline 6b82655bdf36876ba0727bda182905af https://www.encodeproject.org/files/ENCFF025IEP/@@download/ENCFF025IEP.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF187EVU bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF804SIM, ENCFF881XHD 3163595305 ENCODE Processing Pipeline 75a105dd30b5ddf8bbf41e13785b2932 https://www.encodeproject.org/files/ENCFF187EVU/@@download/ENCFF187EVU.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF642MWW bam alignments ENCSR259KYK ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF153AQK, ENCFF723ZWB 2883845368 ENCODE Processing Pipeline 7c0015015a5573f90b46cf6d986b8141 https://www.encodeproject.org/files/ENCFF642MWW/@@download/ENCFF642MWW.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF031HWN bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXS, ENCFF018NEO 514624434 ENCODE Processing Pipeline fde081423bccf0ef19e82f17444e1570 https://www.encodeproject.org/files/ENCFF031HWN/@@download/ENCFF031HWN.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF380NUU bam alignments ENCSR000ADL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXU, ENCFF018NEO 771498659 ENCODE Processing Pipeline 6a92078ebddf77012e71144cdb7b4051 https://www.encodeproject.org/files/ENCFF380NUU/@@download/ENCFF380NUU.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF015PFZ bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF926URZ 1271322581 ENCODE Processing Pipeline 79181a4f7b6f3d5535fff072a0387b9b https://www.encodeproject.org/files/ENCFF015PFZ/@@download/ENCFF015PFZ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF671TRH bam alignments ENCSR678FIT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF593LFI, ENCFF919IQP 1257804024 ENCODE Processing Pipeline b8b9b126ed7d015e8d9fb8d2caf6fb92 https://www.encodeproject.org/files/ENCFF671TRH/@@download/ENCFF671TRH.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF842YIK bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAH, ENCFF018NEO 524260492 ENCODE Processing Pipeline 279ea6a7f7efc4b2e1db1df45f413bb6 https://www.encodeproject.org/files/ENCFF842YIK/@@download/ENCFF842YIK.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF578AAB bam alignments ENCSR000AEB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAF, ENCFF018NEO 856190337 ENCODE Processing Pipeline 7f037f1e427b86a5f41ca14cf68c0d66 https://www.encodeproject.org/files/ENCFF578AAB/@@download/ENCFF578AAB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF561KUH bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NAV, ENCFF018NEO 639856167 ENCODE Processing Pipeline d4f79848d28556a29dd40bd2dfb42494 https://www.encodeproject.org/files/ENCFF561KUH/@@download/ENCFF561KUH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF958CKD bam alignments ENCSR000ADP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NAX, ENCFF018NEO 678227551 ENCODE Processing Pipeline 746ee04b98a2215b0dd9b283d6e12b8a https://www.encodeproject.org/files/ENCFF958CKD/@@download/ENCFF958CKD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF781XPO bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESW, ENCFF018NEO 471168754 ENCODE Processing Pipeline 5b77ef444e3bfbd8935ae2756740ed38 https://www.encodeproject.org/files/ENCFF781XPO/@@download/ENCFF781XPO.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF775GOU bam alignments ENCSR747VPY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETE, ENCFF018NEO 981840575 ENCODE Processing Pipeline fa4083c62ef835f15d387b1be0222edb https://www.encodeproject.org/files/ENCFF775GOU/@@download/ENCFF775GOU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF710AWZ bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANT, ENCFF018NEO 682514028 ENCODE Processing Pipeline 144632f895155981f5d30215616628cc https://www.encodeproject.org/files/ENCFF710AWZ/@@download/ENCFF710AWZ.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF885XJP bam alignments ENCSR964RRJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANY, ENCFF018NEO 707041316 ENCODE Processing Pipeline a16b203b7743fba7154e983557f7122c https://www.encodeproject.org/files/ENCFF885XJP/@@download/ENCFF885XJP.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF297STQ bam alignments ENCSR000AIO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IHT, ENCFF018NEO 1112541493 ENCODE Processing Pipeline 4fa4b3d54b1d9f841b068eaf6d37654e https://www.encodeproject.org/files/ENCFF297STQ/@@download/ENCFF297STQ.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF887LKL bam alignments ENCSR000AIG ChIP-seq EFO:0001098 C2C12 cell line Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHN, ENCFF001IHO, ENCFF001IHP, ENCFF018NEO 737329112 ENCODE Processing Pipeline cd0655c39dfe2af36a254dee4c723ddb https://www.encodeproject.org/files/ENCFF887LKL/@@download/ENCFF887LKL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF107RED bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWT, ENCFF018NEO 949183027 ENCODE Processing Pipeline 75eae53ff5a77bef13112a691cec4a8e https://www.encodeproject.org/files/ENCFF107RED/@@download/ENCFF107RED.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF229TZP bam alignments ENCSR119YTR ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWW, ENCFF018NEO 943717915 ENCODE Processing Pipeline 89a6e08636a6a3e2344fff12e5dd9c3a https://www.encodeproject.org/files/ENCFF229TZP/@@download/ENCFF229TZP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF694XWD bam alignments ENCSR000AIK ChIP-seq EFO:0001098 C2C12 cell line Mus musculus FOSL1-mouse DNA see document see document False 2011-11-23 ENCODE 1 36 ENCFF001IEL, ENCFF018NEO 347150574 ENCODE Processing Pipeline 7bad4e1609275f190dc904484fe076a1 https://www.encodeproject.org/files/ENCFF694XWD/@@download/ENCFF694XWD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF676SED bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 815126823 ENCODE Processing Pipeline 709c251b972bc0a6fd186ecd78d7ec81 https://www.encodeproject.org/files/ENCFF676SED/@@download/ENCFF676SED.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF844ZSH bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 733279921 ENCODE Processing Pipeline 92902cb0ae4464000bebf544ca3cf3db https://www.encodeproject.org/files/ENCFF844ZSH/@@download/ENCFF844ZSH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF094XRA bam alignments ENCSR000AIE ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIZ, ENCFF018NEO 836214587 ENCODE Processing Pipeline fd39221ac1f262382e40b2b1fcfb597a https://www.encodeproject.org/files/ENCFF094XRA/@@download/ENCFF094XRA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF338GKD bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF286ZHO 2833148973 ENCODE Processing Pipeline 76254370d3e5967da8c772d9e030a01b https://www.encodeproject.org/files/ENCFF338GKD/@@download/ENCFF338GKD.bam mm10 released inconsistent platforms ENCFF555LDI bam alignments ENCSR858AUB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF093GXT 3196365102 ENCODE Processing Pipeline dfc7346fcdaa74df2f4658d377c137e7 https://www.encodeproject.org/files/ENCFF555LDI/@@download/ENCFF555LDI.bam mm10 released inconsistent platforms ENCFF783ZWB bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQV, ENCFF002DQX, ENCFF018NEO 930555762 ENCODE Processing Pipeline 7eb8075dd46b4ea7cbc70ad74a3ba605 https://www.encodeproject.org/files/ENCFF783ZWB/@@download/ENCFF783ZWB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF527KOB bam alignments ENCSR311LZM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQW, ENCFF002DQZ, ENCFF002DRB, ENCFF018NEO 954316245 ENCODE Processing Pipeline a05b1e8268674285771d7112cc5ceaf6 https://www.encodeproject.org/files/ENCFF527KOB/@@download/ENCFF527KOB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF346XYF bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AER, ENCFF018NEO 705773802 ENCODE Processing Pipeline 6658d6559b829a03e581aa23790fc750 https://www.encodeproject.org/files/ENCFF346XYF/@@download/ENCFF346XYF.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF467NEJ bam alignments ENCSR424END ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEW, ENCFF018NEO 805040191 ENCODE Processing Pipeline 7ec0342eee63069753038189d7414111 https://www.encodeproject.org/files/ENCFF467NEJ/@@download/ENCFF467NEJ.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF663BAP bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMI, ENCFF018NEO, ENCFF226KSQ 664143228 ENCODE Processing Pipeline 4332cd75ff7c8add2180e6f8df992c2d https://www.encodeproject.org/files/ENCFF663BAP/@@download/ENCFF663BAP.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF439LXI bam alignments ENCSR464MQU ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMJ, ENCFF018NEO 781292175 ENCODE Processing Pipeline 5f737db3cb8697dd9f9db5b136599a8f https://www.encodeproject.org/files/ENCFF439LXI/@@download/ENCFF439LXI.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF244SXN bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTQ, ENCFF018NEO, ENCFF711AIN 1090943209 ENCODE Processing Pipeline c5af3b2d2ed390798cbfe16f02c3361d https://www.encodeproject.org/files/ENCFF244SXN/@@download/ENCFF244SXN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF482QED bam alignments ENCSR375GSG ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTR, ENCFF018NEO, ENCFF897QGK 1003952472 ENCODE Processing Pipeline 9880b612e8a617e0ea268220a6c341ad https://www.encodeproject.org/files/ENCFF482QED/@@download/ENCFF482QED.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF574XMX bam alignments ENCSR601HSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF494VBT 1589262723 ENCODE Processing Pipeline 6584502fa3d3e4490920fa5d4cd5ac17 https://www.encodeproject.org/files/ENCFF574XMX/@@download/ENCFF574XMX.bam mm10 released insufficient read depth for broad peaks control ENCFF095LNY bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXZ, ENCFF018NEO 504692128 ENCODE Processing Pipeline bae61797039263bef6e7103071d94033 https://www.encodeproject.org/files/ENCFF095LNY/@@download/ENCFF095LNY.bam mm10 released low read length, low read depth ENCFF426BAZ bam alignments ENCSR082JEN ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXX, ENCFF018NEO 655299808 ENCODE Processing Pipeline f9b3fc3bb7033ba646074dfece6ecb06 https://www.encodeproject.org/files/ENCFF426BAZ/@@download/ENCFF426BAZ.bam mm10 released low read length, low read depth ENCFF887OHK bam alignments ENCSR164BWS ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF129DZY 1189821729 ENCODE Processing Pipeline d6db5c8566e69f1a226b8c3d4216e9f6 https://www.encodeproject.org/files/ENCFF887OHK/@@download/ENCFF887OHK.bam mm10 released insufficient read depth for broad peaks control ENCFF052QVR bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 537013533 ENCODE Processing Pipeline e6cec2c0ec5ad60b9f3d78a19f536662 https://www.encodeproject.org/files/ENCFF052QVR/@@download/ENCFF052QVR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF494MWJ bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 564649400 ENCODE Processing Pipeline 8a67f3a6b9339f817436e9a9bb1ba11d https://www.encodeproject.org/files/ENCFF494MWJ/@@download/ENCFF494MWJ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF384DFL bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJV, ENCFF018NEO 242949072 ENCODE Processing Pipeline 63ada9279241ae827b98324441d4b45d https://www.encodeproject.org/files/ENCFF384DFL/@@download/ENCFF384DFL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF819KXC bam alignments ENCSR000CAN ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJY, ENCFF018NEO 527092322 ENCODE Processing Pipeline c5b7f2404fa454d6fc3f1d5e0c830a5f https://www.encodeproject.org/files/ENCFF819KXC/@@download/ENCFF819KXC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF769FTV bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001KUJ, ENCFF018NEO 604840685 ENCODE Processing Pipeline 6c108306156cb1bb78d4de6fbce385f5 https://www.encodeproject.org/files/ENCFF769FTV/@@download/ENCFF769FTV.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF242QZL bam alignments ENCSR000CCT ChIP-seq UBERON:0002108 small intestine tissue Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001KUK, ENCFF018NEO 796889804 ENCODE Processing Pipeline fca8527fac661682522c9c11f2dfe731 https://www.encodeproject.org/files/ENCFF242QZL/@@download/ENCFF242QZL.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF502UOP bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF268DID 1337951321 ENCODE Processing Pipeline e84a11dde6201e2db1a9863e04eaf79c https://www.encodeproject.org/files/ENCFF502UOP/@@download/ENCFF502UOP.bam mm10 released inconsistent platforms ENCFF262FYW bam alignments ENCSR071SQK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF651UBB 1379831805 ENCODE Processing Pipeline 38c86bc56094def27507829f5d1cfb42 https://www.encodeproject.org/files/ENCFF262FYW/@@download/ENCFF262FYW.bam mm10 released inconsistent platforms ENCFF439TLQ bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALD, ENCFF018NEO 835494904 ENCODE Processing Pipeline e5d06c8cbe926e5f2c40cc9636a23a41 https://www.encodeproject.org/files/ENCFF439TLQ/@@download/ENCFF439TLQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF248HGQ bam alignments ENCSR631QAE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALE, ENCFF018NEO 720403362 ENCODE Processing Pipeline 7b80982fe9bf1d28453a607af651a776 https://www.encodeproject.org/files/ENCFF248HGQ/@@download/ENCFF248HGQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF394IRO bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXS, ENCFF018NEO 892934821 ENCODE Processing Pipeline 79aa9dc4c18274f8de715673f2d4b860 https://www.encodeproject.org/files/ENCFF394IRO/@@download/ENCFF394IRO.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF742VJP bam alignments ENCSR642DUV ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXU, ENCFF018NEO 1087715413 ENCODE Processing Pipeline 1d2e40092925b75784634309f691bc2e https://www.encodeproject.org/files/ENCFF742VJP/@@download/ENCFF742VJP.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF050SGU bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEX, ENCFF018NEO 739310347 ENCODE Processing Pipeline 6b5676e6f1abdc27dc977d177611c2f1 https://www.encodeproject.org/files/ENCFF050SGU/@@download/ENCFF050SGU.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF219IYF bam alignments ENCSR021ALF ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEY, ENCFF018NEO 1020682272 ENCODE Processing Pipeline 04c929866d174f2925b6bbe6bc28d364 https://www.encodeproject.org/files/ENCFF219IYF/@@download/ENCFF219IYF.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF416IJR bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MVC, ENCFF018NEO 579927219 ENCODE Processing Pipeline dd598c0a8d07b837b43a84d7c81be28c https://www.encodeproject.org/files/ENCFF416IJR/@@download/ENCFF416IJR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF047FOQ bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 4 41 ENCFF001MVJ, ENCFF018NEO 1941541392 ENCODE Processing Pipeline 3059e509426fdc04e2e90d44ae298bc2 https://www.encodeproject.org/files/ENCFF047FOQ/@@download/ENCFF047FOQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF913KOC bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MVL, ENCFF018NEO 3894215553 ENCODE Processing Pipeline af206cf0e578c71edd358502a8b398b1 https://www.encodeproject.org/files/ENCFF913KOC/@@download/ENCFF913KOC.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF093LQI bam alignments ENCSR000DHE ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-08-07 ENCODE 3 41 ENCFF001MVN, ENCFF018NEO 4643217061 ENCODE Processing Pipeline 69726547b3287bab8d257533ede79f3e https://www.encodeproject.org/files/ENCFF093LQI/@@download/ENCFF093LQI.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF142GHN bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF988DEI 1173383469 ENCODE Processing Pipeline 6e6a23faaefc3209a6823a34a084ac69 https://www.encodeproject.org/files/ENCFF142GHN/@@download/ENCFF142GHN.bam mm10 released mild to moderate bottlenecking ENCFF617IEA bam alignments ENCSR537AKT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF813PWP 1299349355 ENCODE Processing Pipeline d4bbcdcad236ac95333b4fb653793b4d https://www.encodeproject.org/files/ENCFF617IEA/@@download/ENCFF617IEA.bam mm10 released mild to moderate bottlenecking ENCFF168MHP bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KTJ, ENCFF018NEO 268040652 ENCODE Processing Pipeline 2cc07b264e16fd91ec21064202cea4d5 https://www.encodeproject.org/files/ENCFF168MHP/@@download/ENCFF168MHP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF264AOI bam alignments ENCSR000CCR ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTI, ENCFF018NEO 536168287 ENCODE Processing Pipeline 9558a4b2c598465fcbdf8fc7a3e3c61d https://www.encodeproject.org/files/ENCFF264AOI/@@download/ENCFF264AOI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF023WKU bam alignments ENCSR000AHQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAA, ENCFF018NEO 983279796 ENCODE Processing Pipeline 504c570663762853902d365fd5488e77 https://www.encodeproject.org/files/ENCFF023WKU/@@download/ENCFF023WKU.bam mm10 released insufficient read depth, control insufficient read depth ENCFF939DHB bam alignments ENCSR000AHR ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAP, ENCFF001IAQ, ENCFF001IAR, ENCFF018NEO 900241868 ENCODE Processing Pipeline 9aca93915cd0c54d43961fdfeb1a19df https://www.encodeproject.org/files/ENCFF939DHB/@@download/ENCFF939DHB.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF743RKU bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002APD, ENCFF002APH, ENCFF002APL, ENCFF018NEO 1587597227 ENCODE Processing Pipeline 14c56b85b00f061af843531603a4b5e3 https://www.encodeproject.org/files/ENCFF743RKU/@@download/ENCFF743RKU.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF548LOV bam alignments ENCSR125VVG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002APB, ENCFF002APC, ENCFF002APM, ENCFF018NEO 1482088979 ENCODE Processing Pipeline 91d28d54492ece2390f1f99604ce7561 https://www.encodeproject.org/files/ENCFF548LOV/@@download/ENCFF548LOV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF277FKY bam alignments ENCSR000AHW ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K79me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001HZS, ENCFF018NEO 785538884 ENCODE Processing Pipeline 5cb5e40023b9d332e41545ca340d908b https://www.encodeproject.org/files/ENCFF277FKY/@@download/ENCFF277FKY.bam mm10 released control low read depth, low read depth ENCFF149QEZ bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF123VKP 1051081880 ENCODE Processing Pipeline 14c6e7579d366d1b5389158c2ff976c8 https://www.encodeproject.org/files/ENCFF149QEZ/@@download/ENCFF149QEZ.bam mm10 released mild to moderate bottlenecking ENCFF173HJD bam alignments ENCSR158ONM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189ORD 1525143946 ENCODE Processing Pipeline 9cf24ef3bf6a2a775b2712bc211f6536 https://www.encodeproject.org/files/ENCFF173HJD/@@download/ENCFF173HJD.bam mm10 released mild to moderate bottlenecking ENCFF292KNL bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BUT, ENCFF002BVA, ENCFF018NEO, ENCFF067HMY 1110902832 ENCODE Processing Pipeline 50572a2016f878fa01153443c5f88ffb https://www.encodeproject.org/files/ENCFF292KNL/@@download/ENCFF292KNL.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF204FLA bam alignments ENCSR631KAJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BUV, ENCFF002BUX, ENCFF018NEO, ENCFF105XDK 1181928408 ENCODE Processing Pipeline c979b8c4caefbb144ada7007f3d7a680 https://www.encodeproject.org/files/ENCFF204FLA/@@download/ENCFF204FLA.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF956DZC bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFT, ENCFF018NEO 925272847 ENCODE Processing Pipeline 65096021ad48f18fc2c3c66175a6f089 https://www.encodeproject.org/files/ENCFF956DZC/@@download/ENCFF956DZC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF513KCC bam alignments ENCSR884MYD ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFN, ENCFF018NEO 865820642 ENCODE Processing Pipeline 3b469c4bbbd83a5b91fdcdc2bb149e09 https://www.encodeproject.org/files/ENCFF513KCC/@@download/ENCFF513KCC.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, antibody characterized with exemption, low read depth ENCFF407ALD bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF198CRA 1528624457 ENCODE Processing Pipeline 85421345dfd68450b402ad0ad79d4e2e https://www.encodeproject.org/files/ENCFF407ALD/@@download/ENCFF407ALD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF262SUZ bam alignments ENCSR320UJD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF643UJF 1762600579 ENCODE Processing Pipeline 7226dd8e93d5b88b0bff7915402766bb https://www.encodeproject.org/files/ENCFF262SUZ/@@download/ENCFF262SUZ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF783HMD bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFE, ENCFF018NEO 383894936 ENCODE Processing Pipeline d190f023ef236fd0df716f022c7f629e https://www.encodeproject.org/files/ENCFF783HMD/@@download/ENCFF783HMD.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF436YEC bam alignments ENCSR000CGN ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFG, ENCFF018NEO 1299948529 ENCODE Processing Pipeline d68f9b1acbf11071fd01075939b86c84 https://www.encodeproject.org/files/ENCFF436YEC/@@download/ENCFF436YEC.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, poor library complexity, control insufficient read depth ENCFF806SME bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKL, ENCFF018NEO 970252361 ENCODE Processing Pipeline 0c520ed4abc71effcc55cb7151c4bc16 https://www.encodeproject.org/files/ENCFF806SME/@@download/ENCFF806SME.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF807XYN bam alignments ENCSR886DWH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKN, ENCFF018NEO 520949601 ENCODE Processing Pipeline 7d64644e8333643efdaeeea024d613a4 https://www.encodeproject.org/files/ENCFF807XYN/@@download/ENCFF807XYN.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF046JTO bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF371GMR 1238041899 ENCODE Processing Pipeline a1e07a2b1d1cf3d4d32b3ca28c510894 https://www.encodeproject.org/files/ENCFF046JTO/@@download/ENCFF046JTO.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF691PZW bam alignments ENCSR737QWV ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF751BHL 1324880863 ENCODE Processing Pipeline 20a20404bd56009f1e291c7812bdb1a2 https://www.encodeproject.org/files/ENCFF691PZW/@@download/ENCFF691PZW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF157OGB bam alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NUM, ENCFF018NEO 833575879 ENCODE Processing Pipeline eba004eb944dc1f0714335579e1f3899 https://www.encodeproject.org/files/ENCFF157OGB/@@download/ENCFF157OGB.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF273KKQ bam alignments ENCSR000ETJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUJ, ENCFF018NEO 857907565 ENCODE Processing Pipeline 6e8c34dd7e9b37cda69d92271f31e407 https://www.encodeproject.org/files/ENCFF273KKQ/@@download/ENCFF273KKQ.bam mm10 released low read length, low read depth biological replicates with identical biosample ENCFF361FQN bam alignments ENCSR000AIV ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IDP, ENCFF018NEO 659226877 ENCODE Processing Pipeline 580ba19fb60abd1e7e616066828848b8 https://www.encodeproject.org/files/ENCFF361FQN/@@download/ENCFF361FQN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF570IDO bam alignments ENCSR000AIS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus REST-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFN, ENCFF001IFO, ENCFF018NEO 276029212 ENCODE Processing Pipeline 7d4e5d305e41579256dd4c992e1364a6 https://www.encodeproject.org/files/ENCFF570IDO/@@download/ENCFF570IDO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, insufficient read length ENCFF993HAY bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IEY, ENCFF018NEO 974820067 ENCODE Processing Pipeline 7a00a1dbe24adbc4af114a8c5fd4a4ad https://www.encodeproject.org/files/ENCFF993HAY/@@download/ENCFF993HAY.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF290FPB bam alignments ENCSR000AJR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0, see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IEZ, ENCFF018NEO 1475911787 ENCODE Processing Pipeline 9f54171228a1ed6ea8434ee7bb7b7b60 https://www.encodeproject.org/files/ENCFF290FPB/@@download/ENCFF290FPB.bam mm10 released low read depth insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF476QXJ bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKT, ENCFF018NEO 1001902695 ENCODE Processing Pipeline ae547a5bc4bd2b328f7bb580d260f495 https://www.encodeproject.org/files/ENCFF476QXJ/@@download/ENCFF476QXJ.bam mm10 released low read length ENCFF427VDY bam alignments ENCSR485GTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKS, ENCFF018NEO 1005796159 ENCODE Processing Pipeline f1637c332be5fff9c3bacfb68f50451c https://www.encodeproject.org/files/ENCFF427VDY/@@download/ENCFF427VDY.bam mm10 released low read length ENCFF290NRO bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF665WTI, ENCFF927FTJ 3163279764 ENCODE Processing Pipeline e83045776cde9c0182f942d9afaea050 https://www.encodeproject.org/files/ENCFF290NRO/@@download/ENCFF290NRO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF746WWE bam alignments ENCSR437SFX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF014LDJ, ENCFF018NEO, ENCFF666NSZ, ENCFF984JKW 3894259204 ENCODE Processing Pipeline 9f46ed0f625f6cb6d7751ef733873bec https://www.encodeproject.org/files/ENCFF746WWE/@@download/ENCFF746WWE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF553VHF bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSO, ENCFF018NEO 864711799 ENCODE Processing Pipeline 662d453c17eab8d8db24ca727b7aca54 https://www.encodeproject.org/files/ENCFF553VHF/@@download/ENCFF553VHF.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF884GIM bam alignments ENCSR076FAM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSK, ENCFF018NEO 1017722849 ENCODE Processing Pipeline cc19aa89da71bfda9b33c2a5462125bb https://www.encodeproject.org/files/ENCFF884GIM/@@download/ENCFF884GIM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF275AKZ bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF178CKG, ENCFF342FDU 3084979730 ENCODE Processing Pipeline 61b18b57082f5fc070ee1d6213e2f41f https://www.encodeproject.org/files/ENCFF275AKZ/@@download/ENCFF275AKZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF420BPA bam alignments ENCSR437NPG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF070FGR, ENCFF453SAO 3014144956 ENCODE Processing Pipeline 490035e77ddbc2ce84e9b832fcc85657 https://www.encodeproject.org/files/ENCFF420BPA/@@download/ENCFF420BPA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF607DVW bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001JWC, ENCFF018NEO 375972538 ENCODE Processing Pipeline a18f2e7dd828210bf28ba2dfb9547641 https://www.encodeproject.org/files/ENCFF607DVW/@@download/ENCFF607DVW.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF316YNB bam alignments ENCSR000CFA ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWI, ENCFF018NEO 1031115162 ENCODE Processing Pipeline 6a1d8c27b15c422f7c984854e401ea3b https://www.encodeproject.org/files/ENCFF316YNB/@@download/ENCFF316YNB.bam mm10 released low read length, mixed read lengths insufficient read depth, insufficient read length, control insufficient read depth ENCFF468ABY bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 657483071 ENCODE Processing Pipeline c1a89b3306e8f3b9fdeccc940df7ccbe https://www.encodeproject.org/files/ENCFF468ABY/@@download/ENCFF468ABY.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF763EMQ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 699656272 ENCODE Processing Pipeline d34ed154a78f32a114e58bbebbe0fc41 https://www.encodeproject.org/files/ENCFF763EMQ/@@download/ENCFF763EMQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF831YQT bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLS, ENCFF018NEO 195725123 ENCODE Processing Pipeline 5436bf0a9cbbfe3071873b228c349103 https://www.encodeproject.org/files/ENCFF831YQT/@@download/ENCFF831YQT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF704YYI bam alignments ENCSR000CDV ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLU, ENCFF018NEO 527517730 ENCODE Processing Pipeline 17d844e2277edac09db32bde6a2e7e22 https://www.encodeproject.org/files/ENCFF704YYI/@@download/ENCFF704YYI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth insufficient read depth ENCFF847FKM bam alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF483VRP 1241513468 ENCODE Processing Pipeline 20f079006abebb8ad9eb3eb7e324470f https://www.encodeproject.org/files/ENCFF847FKM/@@download/ENCFF847FKM.bam mm10 released mild to moderate bottlenecking ENCFF601EJB bam alignments ENCSR582SPN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF848QQS 1423709651 ENCODE Processing Pipeline 829f7eaaf8aac26250907b51e3ac9681 https://www.encodeproject.org/files/ENCFF601EJB/@@download/ENCFF601EJB.bam mm10 released mild to moderate bottlenecking ENCFF642FOT bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF568OGC, ENCFF647PIC 2608757952 ENCODE Processing Pipeline 460d39b70fc137cc5279f1e4a8825e72 https://www.encodeproject.org/files/ENCFF642FOT/@@download/ENCFF642FOT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF487AIV bam alignments ENCSR424WHM ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF732BVK, ENCFF765QAR 2614257160 ENCODE Processing Pipeline e1413084a4b7b187051f97866344931d https://www.encodeproject.org/files/ENCFF487AIV/@@download/ENCFF487AIV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF626CWR bam alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF981WQT 2818944841 ENCODE Processing Pipeline 3c36d8f6e75a0753bb8a2340f6d034a1 https://www.encodeproject.org/files/ENCFF626CWR/@@download/ENCFF626CWR.bam mm10 released ENCFF348TIN bam alignments ENCSR992SHK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF069IQM 2966948973 ENCODE Processing Pipeline ca22665139301987847a49a8b92fecf9 https://www.encodeproject.org/files/ENCFF348TIN/@@download/ENCFF348TIN.bam mm10 released ENCFF655WRL bam alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF547MGW 2551144847 ENCODE Processing Pipeline 283d63bbfebb4ff4475a78f0bee80de7 https://www.encodeproject.org/files/ENCFF655WRL/@@download/ENCFF655WRL.bam mm10 released ENCFF017VRQ bam alignments ENCSR914QGB ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF280YVK 2674467793 ENCODE Processing Pipeline 43a598f020ec055a7fb76d641a5c901a https://www.encodeproject.org/files/ENCFF017VRQ/@@download/ENCFF017VRQ.bam mm10 released ENCFF398EKL bam alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF646LXU 2827607747 ENCODE Processing Pipeline b872f0a3f7e27401206ac0592663525d https://www.encodeproject.org/files/ENCFF398EKL/@@download/ENCFF398EKL.bam mm10 released ENCFF975XHS bam alignments ENCSR238SGC ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF833BLU 2650788551 ENCODE Processing Pipeline 2535b87f0def01f3d5d9a0d68ed8f3e2 https://www.encodeproject.org/files/ENCFF975XHS/@@download/ENCFF975XHS.bam mm10 released ENCFF179RSO bam alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF821JEP, ENCFF966EIE 1421898004 ENCODE Processing Pipeline db0fbe3b507165e0476c7adaa955d9e9 https://www.encodeproject.org/files/ENCFF179RSO/@@download/ENCFF179RSO.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF553SUK bam alignments ENCSR984OHL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF066BLW, ENCFF332VAG, ENCFF686BRF 1893396059 ENCODE Processing Pipeline a653d0dbf8e2d25dd415cf939daab915 https://www.encodeproject.org/files/ENCFF553SUK/@@download/ENCFF553SUK.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF989KUF bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF271ZOP 2648771564 ENCODE Processing Pipeline c4fee32501638f1d86519b1f36c9e19c https://www.encodeproject.org/files/ENCFF989KUF/@@download/ENCFF989KUF.bam mm10 released inconsistent platforms, control low read depth ENCFF891VNO bam alignments ENCSR921ILW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF906UIE 3082434807 ENCODE Processing Pipeline 0e0fb43ac5431cf8f359d5ca5ea6bdfa https://www.encodeproject.org/files/ENCFF891VNO/@@download/ENCFF891VNO.bam mm10 released inconsistent platforms, control low read depth ENCFF788XZB bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF055JSD, ENCFF067AWT, ENCFF789KSH 2747963744 ENCODE Processing Pipeline 488b641bb29ece76ba0e7e4313deade8 https://www.encodeproject.org/files/ENCFF788XZB/@@download/ENCFF788XZB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF801BAX bam alignments ENCSR861MUP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF153OPW, ENCFF564ILE 2882440850 ENCODE Processing Pipeline 04d8a0331027385f16895733366735c4 https://www.encodeproject.org/files/ENCFF801BAX/@@download/ENCFF801BAX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF452QBT bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF291JZH, ENCFF641YIL 3232497654 ENCODE Processing Pipeline dfa7a3d0994d4cfc816617bc78c2bd26 https://www.encodeproject.org/files/ENCFF452QBT/@@download/ENCFF452QBT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF269FHK bam alignments ENCSR207UMX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057SUG, ENCFF737MPQ 3182568119 ENCODE Processing Pipeline 78b54d5866d63288f2b2eaa5ff38c7aa https://www.encodeproject.org/files/ENCFF269FHK/@@download/ENCFF269FHK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF224EJF bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFD, ENCFF018NEO 805349138 ENCODE Processing Pipeline 593009a530cedf19a5f6047d82bbe24f https://www.encodeproject.org/files/ENCFF224EJF/@@download/ENCFF224EJF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF865YUN bam alignments ENCSR265NBM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFH, ENCFF018NEO 979174380 ENCODE Processing Pipeline 2e8b0e4203a15f73a0bcd7eaa6692237 https://www.encodeproject.org/files/ENCFF865YUN/@@download/ENCFF865YUN.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity ENCFF872AZH bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002AQF, ENCFF018NEO 1435051788 ENCODE Processing Pipeline 4e5cf336f46b42d56c9fb0ba4eb0d40c https://www.encodeproject.org/files/ENCFF872AZH/@@download/ENCFF872AZH.bam mm10 released insufficient read depth for broad peaks control ENCFF238DWC bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002AQG, ENCFF018NEO 1494757798 ENCODE Processing Pipeline 3fe3dd97092a1482a2622d707a1bf532 https://www.encodeproject.org/files/ENCFF238DWC/@@download/ENCFF238DWC.bam mm10 released insufficient read depth for broad peaks control ENCFF598OHC bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQG, ENCFF018NEO 1130170515 ENCODE Processing Pipeline dce90a9d0d0d552552e7420a5d331041 https://www.encodeproject.org/files/ENCFF598OHC/@@download/ENCFF598OHC.bam mm10 released insufficient read depth for broad peaks control ENCFF383CGK bam alignments ENCSR232EOO ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQF, ENCFF018NEO 1084466431 ENCODE Processing Pipeline b366ed9f50c590cf98aab51d57c3747d https://www.encodeproject.org/files/ENCFF383CGK/@@download/ENCFF383CGK.bam mm10 released insufficient read depth for broad peaks control ENCFF713PPI bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LUU, ENCFF018NEO 1470586118 ENCODE Processing Pipeline 5f3e31f694f9055df675d811ce9fa862 https://www.encodeproject.org/files/ENCFF713PPI/@@download/ENCFF713PPI.bam mm10 released inconsistent platforms insufficient read depth ENCFF426BGM bam alignments ENCSR000DHQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LUW, ENCFF018NEO 3050058522 ENCODE Processing Pipeline 8d095b381e3f7f71f5108284d3c989e8 https://www.encodeproject.org/files/ENCFF426BGM/@@download/ENCFF426BGM.bam mm10 released inconsistent platforms insufficient read depth ENCFF852WML bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 665237378 ENCODE Processing Pipeline dab97deefdab40c36c7016aca145672e https://www.encodeproject.org/files/ENCFF852WML/@@download/ENCFF852WML.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF803ESS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 859759657 ENCODE Processing Pipeline 491c7a6e3187808d0f25965e4e99cfc2 https://www.encodeproject.org/files/ENCFF803ESS/@@download/ENCFF803ESS.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF035MWY bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCH, ENCFF018NEO 754058920 ENCODE Processing Pipeline 01da2dbd269032f967c11a5ea44b13a5 https://www.encodeproject.org/files/ENCFF035MWY/@@download/ENCFF035MWY.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF750EGB bam alignments ENCSR000DIZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCR, ENCFF018NEO 3518982306 ENCODE Processing Pipeline 31b7f0e23c56d9677b02f2d07849cdf6 https://www.encodeproject.org/files/ENCFF750EGB/@@download/ENCFF750EGB.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF464ZPC bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 864620000 ENCODE Processing Pipeline a92e2b5ebdcfcb46e7a947c387c931a8 https://www.encodeproject.org/files/ENCFF464ZPC/@@download/ENCFF464ZPC.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF039PBK bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 829916391 ENCODE Processing Pipeline 3f762d3d24129708c0728da1ca245b69 https://www.encodeproject.org/files/ENCFF039PBK/@@download/ENCFF039PBK.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF526KRJ bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 388115545 ENCODE Processing Pipeline dc970721525d375b902d870408467535 https://www.encodeproject.org/files/ENCFF526KRJ/@@download/ENCFF526KRJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF097KLO bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 266750728 ENCODE Processing Pipeline 9048ed5dc8b9bb401c775fe63e5a88ef https://www.encodeproject.org/files/ENCFF097KLO/@@download/ENCFF097KLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF077YAW bam alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF920HBG 1620643834 ENCODE Processing Pipeline fcd939a45da18bcef41f3451bce9f715 https://www.encodeproject.org/files/ENCFF077YAW/@@download/ENCFF077YAW.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF658CWV bam alignments ENCSR501GBJ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF456UKE 1609940452 ENCODE Processing Pipeline 00671d84dbcb44c4216a1e080209cd80 https://www.encodeproject.org/files/ENCFF658CWV/@@download/ENCFF658CWV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF126TMF bam alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKM, ENCFF018NEO 1234925859 ENCODE Processing Pipeline 98c15586e89456c4e9aa5030b1e823eb https://www.encodeproject.org/files/ENCFF126TMF/@@download/ENCFF126TMF.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF156ENX bam alignments ENCSR940CMI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKK, ENCFF018NEO 1162135181 ENCODE Processing Pipeline 6c8d0c86c239793d8ec08ca5de3dfb69 https://www.encodeproject.org/files/ENCFF156ENX/@@download/ENCFF156ENX.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF904JCK bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUG, ENCFF018NEO 971424729 ENCODE Processing Pipeline d74ce88a47664e7c4fdce346d59e345a https://www.encodeproject.org/files/ENCFF904JCK/@@download/ENCFF904JCK.bam mm10 released low read length, low read depth ENCFF574YSD bam alignments ENCSR795UOC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUH, ENCFF018NEO 896064401 ENCODE Processing Pipeline 535cf5aa0307274642e333149b44f4aa https://www.encodeproject.org/files/ENCFF574YSD/@@download/ENCFF574YSD.bam mm10 released low read length, low read depth ENCFF235IHH bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF147DHF 1442631388 ENCODE Processing Pipeline f9debca1d326fd551c78ad5ec99f4175 https://www.encodeproject.org/files/ENCFF235IHH/@@download/ENCFF235IHH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF506WBP bam alignments ENCSR289SWJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF535KNJ 1562182711 ENCODE Processing Pipeline f9db2231ebe1d3b0177043e1eed4af75 https://www.encodeproject.org/files/ENCFF506WBP/@@download/ENCFF506WBP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF127ZWH bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DRZ, ENCFF002DSE, ENCFF018NEO 1033933453 ENCODE Processing Pipeline 73f46dae3e4906069de60dedfbf1fd23 https://www.encodeproject.org/files/ENCFF127ZWH/@@download/ENCFF127ZWH.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF695DES bam alignments ENCSR065LAB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSB, ENCFF002DSF, ENCFF018NEO 1119828265 ENCODE Processing Pipeline 5f6d45b541a43c0bdf32e98454fdd207 https://www.encodeproject.org/files/ENCFF695DES/@@download/ENCFF695DES.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates ENCFF695YAS bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF322WUF 1688875530 ENCODE Processing Pipeline bda495c10bc63df1089a88310d37ea7b https://www.encodeproject.org/files/ENCFF695YAS/@@download/ENCFF695YAS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF982HXU bam alignments ENCSR699XHY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF349WTC 1365313913 ENCODE Processing Pipeline 044c75cec00c8cf2d8ed28071ee70ba8 https://www.encodeproject.org/files/ENCFF982HXU/@@download/ENCFF982HXU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF068LAD bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTR, ENCFF018NEO 296587754 ENCODE Processing Pipeline 6be47ca09a9371485a460c85b57582d3 https://www.encodeproject.org/files/ENCFF068LAD/@@download/ENCFF068LAD.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF520ZBA bam alignments ENCSR000CCQ ChIP-seq UBERON:0002108 small intestine tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTS, ENCFF018NEO 427541197 ENCODE Processing Pipeline 78833c4e3b951b4599bf989958112e0f https://www.encodeproject.org/files/ENCFF520ZBA/@@download/ENCFF520ZBA.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF400RXO bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIT, ENCFF018NEO 971417749 ENCODE Processing Pipeline 26d6bb64403f1d6a275ce3398fdfcc3e https://www.encodeproject.org/files/ENCFF400RXO/@@download/ENCFF400RXO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF763FKZ bam alignments ENCSR656AMS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIS, ENCFF018NEO, ENCFF635OYR 1051141557 ENCODE Processing Pipeline f635cf0a6bc7db156d88d252f5127a79 https://www.encodeproject.org/files/ENCFF763FKZ/@@download/ENCFF763FKZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF356ALS bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 523433771 ENCODE Processing Pipeline fc25feda3d87c364c0e19dda4036a045 https://www.encodeproject.org/files/ENCFF356ALS/@@download/ENCFF356ALS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF079MWN bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 725071316 ENCODE Processing Pipeline ab1e4725ea22d1e34eb1bac2b14e2501 https://www.encodeproject.org/files/ENCFF079MWN/@@download/ENCFF079MWN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF449TKZ bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF793OXW 1438136794 ENCODE Processing Pipeline 7635c2c2106db05d90c60ebf2056539d https://www.encodeproject.org/files/ENCFF449TKZ/@@download/ENCFF449TKZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF031GNX bam alignments ENCSR671NSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF069RQA 1509722644 ENCODE Processing Pipeline 7d0c1b4320926ac3719094b46b84014a https://www.encodeproject.org/files/ENCFF031GNX/@@download/ENCFF031GNX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF572OOM bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 721210553 ENCODE Processing Pipeline 48caea704afd9d07d65699d70cfa16b7 https://www.encodeproject.org/files/ENCFF572OOM/@@download/ENCFF572OOM.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF647VRB bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 542081189 ENCODE Processing Pipeline 1b563fa83cf177b0aa0cb86f4fa85be1 https://www.encodeproject.org/files/ENCFF647VRB/@@download/ENCFF647VRB.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF981OYN bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYA, ENCFF018NEO 485743308 ENCODE Processing Pipeline 0028322736cc25e5b38c87f818337485 https://www.encodeproject.org/files/ENCFF981OYN/@@download/ENCFF981OYN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF029CMW bam alignments ENCSR000ADM ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYC, ENCFF018NEO 830088577 ENCODE Processing Pipeline 1d83ada7e522db73d7707d7f6b98291d https://www.encodeproject.org/files/ENCFF029CMW/@@download/ENCFF029CMW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF452KBZ bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQA, ENCFF018NEO 321374852 ENCODE Processing Pipeline 7a63ca5e526f909b4f6841ffdd9ac5b3 https://www.encodeproject.org/files/ENCFF452KBZ/@@download/ENCFF452KBZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF406NKS bam alignments ENCSR000CEX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQB, ENCFF018NEO 369524293 ENCODE Processing Pipeline 05d24da3a593a3ef750f9f3f7d985d35 https://www.encodeproject.org/files/ENCFF406NKS/@@download/ENCFF406NKS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF526EGV bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF017RTP, ENCFF018NEO 3214314602 ENCODE Processing Pipeline e06b089bc2304728e77cfeb53335e764 https://www.encodeproject.org/files/ENCFF526EGV/@@download/ENCFF526EGV.bam mm10 released inconsistent platforms ENCFF190ZOW bam alignments ENCSR449EUZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF943EUQ 3134915664 ENCODE Processing Pipeline a5d65b65511402dc7c09d04ea1ae8d40 https://www.encodeproject.org/files/ENCFF190ZOW/@@download/ENCFF190ZOW.bam mm10 released inconsistent platforms ENCFF256EFQ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF202SUQ, ENCFF209PAZ 2751721095 ENCODE Processing Pipeline 82c6f70c9190456e4fb10cf29e0bb3bc https://www.encodeproject.org/files/ENCFF256EFQ/@@download/ENCFF256EFQ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF937SNJ bam alignments ENCSR426EZM ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101LJZ 2707013622 ENCODE Processing Pipeline f726b150f20f0bafa57376d12dfdfa3d https://www.encodeproject.org/files/ENCFF937SNJ/@@download/ENCFF937SNJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF976AWB bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETH, ENCFF018NEO 711250816 ENCODE Processing Pipeline a43a27f947369d9b672a91eb0b5195b3 https://www.encodeproject.org/files/ENCFF976AWB/@@download/ENCFF976AWB.bam mm10 released low read length, low read depth ENCFF931ASG bam alignments ENCSR846ZTT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETG, ENCFF018NEO 646514433 ENCODE Processing Pipeline 20d6935f507319ab13f2922b8b03a68a https://www.encodeproject.org/files/ENCFF931ASG/@@download/ENCFF931ASG.bam mm10 released low read length, low read depth ENCFF130PKG bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF819CUB 1535644265 ENCODE Processing Pipeline 018e86c28967bc74f252827bf2d6762f https://www.encodeproject.org/files/ENCFF130PKG/@@download/ENCFF130PKG.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF112XOU bam alignments ENCSR758UAI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF614OCT 1492797645 ENCODE Processing Pipeline 6a5e11398fd0ea7d10d176d87665ddd6 https://www.encodeproject.org/files/ENCFF112XOU/@@download/ENCFF112XOU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF880SQD bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF661YTO 2810411214 ENCODE Processing Pipeline b3e3921420c1be6def09a502d40f22d6 https://www.encodeproject.org/files/ENCFF880SQD/@@download/ENCFF880SQD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF901RYX bam alignments ENCSR880HDV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF291VOE, ENCFF293HIQ, ENCFF572OIN 2640005554 ENCODE Processing Pipeline 0631a74e1efa1477c01b53d9e3debe51 https://www.encodeproject.org/files/ENCFF901RYX/@@download/ENCFF901RYX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF335SKO bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 593402730 ENCODE Processing Pipeline f61383b89828a5518beaf715fe7f16da https://www.encodeproject.org/files/ENCFF335SKO/@@download/ENCFF335SKO.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF899YSW bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 643421780 ENCODE Processing Pipeline b8f3f25faa17d0c9e9b5879f43377202 https://www.encodeproject.org/files/ENCFF899YSW/@@download/ENCFF899YSW.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF882LCZ bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 787576613 ENCODE Processing Pipeline 1b90a78a1bab67d1b9a27dd79fc8aff4 https://www.encodeproject.org/files/ENCFF882LCZ/@@download/ENCFF882LCZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF967BIA bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 748085534 ENCODE Processing Pipeline b87d4bcd5983069eefba01f5a1bf4b48 https://www.encodeproject.org/files/ENCFF967BIA/@@download/ENCFF967BIA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF723UVS bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUV, ENCFF018NEO 182510659 ENCODE Processing Pipeline aed3e6dc9ce5b127648ace4a848f3b4f https://www.encodeproject.org/files/ENCFF723UVS/@@download/ENCFF723UVS.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF986ZHA bam alignments ENCSR000CBD ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUR, ENCFF018NEO 329343883 ENCODE Processing Pipeline 3c40a4f3e8e65677ef353f2c9cd08603 https://www.encodeproject.org/files/ENCFF986ZHA/@@download/ENCFF986ZHA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF968EIP bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRA, ENCFF018NEO 523288754 ENCODE Processing Pipeline f3549d62c7f1962b038543a0435319f5 https://www.encodeproject.org/files/ENCFF968EIP/@@download/ENCFF968EIP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF297SAH bam alignments ENCSR401GRX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRC, ENCFF018NEO 550900372 ENCODE Processing Pipeline 1499b95195df94f6cb4e1bf83832c193 https://www.encodeproject.org/files/ENCFF297SAH/@@download/ENCFF297SAH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF339MRB bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWB, ENCFF018NEO 495432195 ENCODE Processing Pipeline 5088db2c1fdb124df1e7112a2144abe7 https://www.encodeproject.org/files/ENCFF339MRB/@@download/ENCFF339MRB.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF484XJK bam alignments ENCSR000DIO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWM, ENCFF018NEO 3747967475 ENCODE Processing Pipeline fddfe5d8f96792c3b98b221f48d490ff https://www.encodeproject.org/files/ENCFF484XJK/@@download/ENCFF484XJK.bam mm10 released low read length, inconsistent platforms, mixed read lengths insufficient read depth ENCFF191ZBM bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF290RFB 1390611583 ENCODE Processing Pipeline 05b73df16d630189e881c0cb47d1ef47 https://www.encodeproject.org/files/ENCFF191ZBM/@@download/ENCFF191ZBM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF581JBZ bam alignments ENCSR706PSQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF896FUL 1539824272 ENCODE Processing Pipeline ca0708a1ce1d09966b6e3753cdcd30b8 https://www.encodeproject.org/files/ENCFF581JBZ/@@download/ENCFF581JBZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF423EOT bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF930MQT 1283804899 ENCODE Processing Pipeline 92504c40ef7f2ba76dcf5a2e8c6e7d37 https://www.encodeproject.org/files/ENCFF423EOT/@@download/ENCFF423EOT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF458FQT bam alignments ENCSR175KBJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF162EWP 1274569933 ENCODE Processing Pipeline f032dc3cfa2cced5e0dcfdd5067052bf https://www.encodeproject.org/files/ENCFF458FQT/@@download/ENCFF458FQT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF369JUB bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYH, ENCFF018NEO 850034222 ENCODE Processing Pipeline 85bacf243a5649e95188515821dee70e https://www.encodeproject.org/files/ENCFF369JUB/@@download/ENCFF369JUB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF135BIZ bam alignments ENCSR000CGC ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYL, ENCFF018NEO 247916746 ENCODE Processing Pipeline aeced48f53b9ed70a6560d307486f12b https://www.encodeproject.org/files/ENCFF135BIZ/@@download/ENCFF135BIZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF436OKP bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001JZE, ENCFF018NEO 328418920 ENCODE Processing Pipeline 28b5e6d89f174212084efd8ba860e672 https://www.encodeproject.org/files/ENCFF436OKP/@@download/ENCFF436OKP.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF380RIM bam alignments ENCSR000CFG ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus Control-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001JZL, ENCFF018NEO 633186768 ENCODE Processing Pipeline 978da62059b297ff6f8f9ea78576da40 https://www.encodeproject.org/files/ENCFF380RIM/@@download/ENCFF380RIM.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth ENCFF705BZU bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001KWE, ENCFF018NEO 529876577 ENCODE Processing Pipeline c8d224a0ef4b0d26f81369a58d8cb6b1 https://www.encodeproject.org/files/ENCFF705BZU/@@download/ENCFF705BZU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF314OGN bam alignments ENCSR000CBE ChIP-seq UBERON:0002106 spleen tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001KVR, ENCFF018NEO 581800730 ENCODE Processing Pipeline 3fc7a4e52692ef44cd1e5cd0533a5bd9 https://www.encodeproject.org/files/ENCFF314OGN/@@download/ENCFF314OGN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth insufficient read length ENCFF293AUO bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 905656227 ENCODE Processing Pipeline d326cb709ade95966e3e65ccc63d165b https://www.encodeproject.org/files/ENCFF293AUO/@@download/ENCFF293AUO.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF803DOV bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 963917869 ENCODE Processing Pipeline 50498abb57016ec11e2eff4dc4c7dcda https://www.encodeproject.org/files/ENCFF803DOV/@@download/ENCFF803DOV.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF503EBL bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHM, ENCFF018NEO 903839319 ENCODE Processing Pipeline 4322f8cbcc25d0dc5de7131d5178bc15 https://www.encodeproject.org/files/ENCFF503EBL/@@download/ENCFF503EBL.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF062TRB bam alignments ENCSR969CPK ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHN, ENCFF018NEO 954521473 ENCODE Processing Pipeline 4a39d4665867eeabb4f298f4f2736b72 https://www.encodeproject.org/files/ENCFF062TRB/@@download/ENCFF062TRB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF271WNO bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 887607689 ENCODE Processing Pipeline dd670eda7de552e256f5455cc74a5b95 https://www.encodeproject.org/files/ENCFF271WNO/@@download/ENCFF271WNO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF552KJL bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 785473760 ENCODE Processing Pipeline 22e41dfd0cc88ef28ef1ab0cdf9defe1 https://www.encodeproject.org/files/ENCFF552KJL/@@download/ENCFF552KJL.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF259AIP bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIO, ENCFF018NEO 1156689166 ENCODE Processing Pipeline 0f3558c34335845ded889d1cfe4ad790 https://www.encodeproject.org/files/ENCFF259AIP/@@download/ENCFF259AIP.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF109EIV bam alignments ENCSR458PAO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIK, ENCFF018NEO, ENCFF868WED 1199513196 ENCODE Processing Pipeline 16a93998a0c58b93a3af1c0ec581dcea https://www.encodeproject.org/files/ENCFF109EIV/@@download/ENCFF109EIV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF579SSL bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF311QBQ 1254907094 ENCODE Processing Pipeline 434c0a37cb748d9c88f15642e23a622b https://www.encodeproject.org/files/ENCFF579SSL/@@download/ENCFF579SSL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF530AAI bam alignments ENCSR402ZLE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF313TTW 1702896297 ENCODE Processing Pipeline 0e4349b4c0118682fce112e8bc9996b0 https://www.encodeproject.org/files/ENCFF530AAI/@@download/ENCFF530AAI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF914TSC bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTF, ENCFF018NEO 437264371 ENCODE Processing Pipeline 6f8e87a3cdf85c521c37cc2cf84c9ce6 https://www.encodeproject.org/files/ENCFF914TSC/@@download/ENCFF914TSC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF674KWP bam alignments ENCSR000CDR ChIP-seq UBERON:0001987 placenta tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTC, ENCFF018NEO 189143845 ENCODE Processing Pipeline 80adad1918db1859dfc15cabda2d598a https://www.encodeproject.org/files/ENCFF674KWP/@@download/ENCFF674KWP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF282WAG bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHK, ENCFF018NEO, ENCFF316RCH 1045109386 ENCODE Processing Pipeline c8f398ce796926959b48f93f0bf0eeac https://www.encodeproject.org/files/ENCFF282WAG/@@download/ENCFF282WAG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF197GEE bam alignments ENCSR604DCI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF291XMI 1067258971 ENCODE Processing Pipeline f1178702e8442018cf0002a1721da490 https://www.encodeproject.org/files/ENCFF197GEE/@@download/ENCFF197GEE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF256URV bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCN, ENCFF018NEO 2053315902 ENCODE Processing Pipeline 36f4434fffa3dbe8f16f3de12bbfcde2 https://www.encodeproject.org/files/ENCFF256URV/@@download/ENCFF256URV.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF188NHC bam alignments ENCSR000DHJ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCF, ENCFF018NEO 819733996 ENCODE Processing Pipeline b5252115231f3091a0eb198626f94ad6 https://www.encodeproject.org/files/ENCFF188NHC/@@download/ENCFF188NHC.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF301RJU bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGR, ENCFF018NEO 721057885 ENCODE Processing Pipeline 35831c17d4ba9c185ae77b6a36d8d760 https://www.encodeproject.org/files/ENCFF301RJU/@@download/ENCFF301RJU.bam mm10 released low read length, low read depth ENCFF720PCI bam alignments ENCSR288OHO ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGI, ENCFF018NEO 1134698747 ENCODE Processing Pipeline eb1c3267281da28195da8a3b17010115 https://www.encodeproject.org/files/ENCFF720PCI/@@download/ENCFF720PCI.bam mm10 released low read length, low read depth ENCFF201FOH bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF131IIM 1844425525 ENCODE Processing Pipeline 3fd802196f245c6f120f230e80506755 https://www.encodeproject.org/files/ENCFF201FOH/@@download/ENCFF201FOH.bam mm10 released inconsistent platforms ENCFF382CMT bam alignments ENCSR717XCU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF243GMK 1601934097 ENCODE Processing Pipeline 59bc052153a1ae47f4d1d36266081098 https://www.encodeproject.org/files/ENCFF382CMT/@@download/ENCFF382CMT.bam mm10 released inconsistent platforms ENCFF087DDW bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAE, ENCFF018NEO 312943171 ENCODE Processing Pipeline 3129825bb9b597b35ff5abbcb15a256c https://www.encodeproject.org/files/ENCFF087DDW/@@download/ENCFF087DDW.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF693UTV bam alignments ENCSR000CAK ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAD, ENCFF018NEO 516846534 ENCODE Processing Pipeline f6e1fbb48516a7ab097b31c657fe58b4 https://www.encodeproject.org/files/ENCFF693UTV/@@download/ENCFF693UTV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF057HUV bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JYA, ENCFF018NEO 589302339 ENCODE Processing Pipeline e23ed11570fa664ae7f9d353d46eafda https://www.encodeproject.org/files/ENCFF057HUV/@@download/ENCFF057HUV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF470SBJ bam alignments ENCSR000CAG ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JYB, ENCFF018NEO 718685068 ENCODE Processing Pipeline d6a670c002b032979781f9ce0e977490 https://www.encodeproject.org/files/ENCFF470SBJ/@@download/ENCFF470SBJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF236VKK bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF397QZC 1940488470 ENCODE Processing Pipeline 6f6f52052c21f76277dcaae359b72255 https://www.encodeproject.org/files/ENCFF236VKK/@@download/ENCFF236VKK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF761HMI bam alignments ENCSR691NQH ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF454VLS 1661887053 ENCODE Processing Pipeline 6319d2ad00831319012aec72e397ea08 https://www.encodeproject.org/files/ENCFF761HMI/@@download/ENCFF761HMI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF297NEG bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGJ, ENCFF018NEO 327244222 ENCODE Processing Pipeline 3479fd32fdb0fb3e29808303f33ce264 https://www.encodeproject.org/files/ENCFF297NEG/@@download/ENCFF297NEG.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF169GZC bam alignments ENCSR000CDM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGL, ENCFF018NEO 353381641 ENCODE Processing Pipeline b32faf9a87a7c8e629c43abff827ff6e https://www.encodeproject.org/files/ENCFF169GZC/@@download/ENCFF169GZC.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, control insufficient read depth ENCFF844DSD bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWX, ENCFF018NEO 855887300 ENCODE Processing Pipeline a8cece301dff5775efd9c2525ab642e1 https://www.encodeproject.org/files/ENCFF844DSD/@@download/ENCFF844DSD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF437ESL bam alignments ENCSR295PFM ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXH, ENCFF018NEO 1065209360 ENCODE Processing Pipeline b3a48e88327343e02550c8cd3ef2b6e9 https://www.encodeproject.org/files/ENCFF437ESL/@@download/ENCFF437ESL.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF642ZHP bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002APO, ENCFF002AQB, ENCFF018NEO 1524577602 ENCODE Processing Pipeline f8b31ec4ab8cddb99ca59a37835a6206 https://www.encodeproject.org/files/ENCFF642ZHP/@@download/ENCFF642ZHP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF782MHQ bam alignments ENCSR341XCL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002APN, ENCFF002APP, ENCFF002APY, ENCFF018NEO 1773380863 ENCODE Processing Pipeline a9ac6cdf93c37b95525d745d0ab6c783 https://www.encodeproject.org/files/ENCFF782MHQ/@@download/ENCFF782MHQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates ENCFF144LFW bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRS, ENCFF018NEO 407168970 ENCODE Processing Pipeline 3a35f666275a08b693c68604b60c2aff https://www.encodeproject.org/files/ENCFF144LFW/@@download/ENCFF144LFW.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF764AGV bam alignments ENCSR000CCF ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRT, ENCFF018NEO 505977305 ENCODE Processing Pipeline c1f1d81465f25224a0db07e479e21a2b https://www.encodeproject.org/files/ENCFF764AGV/@@download/ENCFF764AGV.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF431RNJ bam alignments ENCSR014GMV ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-09 ENCODE 1 50 ENCFF018NEO, ENCFF299JNL 1135888339 ENCODE Processing Pipeline 4a09cfd6d6ad06a67bc386330af9266c https://www.encodeproject.org/files/ENCFF431RNJ/@@download/ENCFF431RNJ.bam mm10 released insufficient read depth for broad peaks control ENCFF482CUI bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APE, ENCFF018NEO 996783779 ENCODE Processing Pipeline 1e2830b6b63a36b4ae4becaa3183e3bd https://www.encodeproject.org/files/ENCFF482CUI/@@download/ENCFF482CUI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF881HDU bam alignments ENCSR048IZJ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APG, ENCFF018NEO 1380319885 ENCODE Processing Pipeline b37599889374969528780526b46e5a6f https://www.encodeproject.org/files/ENCFF881HDU/@@download/ENCFF881HDU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths ENCFF799PON bam alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF475REW 2034236817 ENCODE Processing Pipeline 27729ba4b5ac1af39e3e2ff906d2df7c https://www.encodeproject.org/files/ENCFF799PON/@@download/ENCFF799PON.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF911LOT bam alignments ENCSR538DPG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF773FQJ 2657115247 ENCODE Processing Pipeline e8e5be97c00f93bee15928281fc04409 https://www.encodeproject.org/files/ENCFF911LOT/@@download/ENCFF911LOT.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF254JHP bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MBR, ENCFF018NEO 360484549 ENCODE Processing Pipeline 2aca636820afb01286b3466a3f7059e2 https://www.encodeproject.org/files/ENCFF254JHP/@@download/ENCFF254JHP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF211VNX bam alignments ENCSR000DIW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MBW, ENCFF018NEO 2844300217 ENCODE Processing Pipeline c421be743020df1a2d2f3788af1988d4 https://www.encodeproject.org/files/ENCFF211VNX/@@download/ENCFF211VNX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth ENCFF298UEM bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETC, ENCFF018NEO 1031951976 ENCODE Processing Pipeline f14e2ac18ef62654d8e4b56611bb922f https://www.encodeproject.org/files/ENCFF298UEM/@@download/ENCFF298UEM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF929HGZ bam alignments ENCSR907CPZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESX, ENCFF018NEO, ENCFF865KDT 1360545174 ENCODE Processing Pipeline 99b20431f4c06cc3441afcbaccebaede https://www.encodeproject.org/files/ENCFF929HGZ/@@download/ENCFF929HGZ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF128QRQ bam alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF183PVA 2707333828 ENCODE Processing Pipeline 65c8004a9aeb140d023ead687337a620 https://www.encodeproject.org/files/ENCFF128QRQ/@@download/ENCFF128QRQ.bam mm10 released ENCFF887RXR bam alignments ENCSR681NQF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF929WDB 2663902464 ENCODE Processing Pipeline 63277868f26b80e010599f5af191e16d https://www.encodeproject.org/files/ENCFF887RXR/@@download/ENCFF887RXR.bam mm10 released ENCFF647SBM bam alignments ENCSR000AHM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K27me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001IAJ, ENCFF001IAK, ENCFF001IAL, ENCFF018NEO 677484590 ENCODE Processing Pipeline d7464487f08dc1e55693bd604ed1c9b7 https://www.encodeproject.org/files/ENCFF647SBM/@@download/ENCFF647SBM.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF122QLV bam alignments ENCSR000AJQ ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2011-11-28 ENCODE 1 32 ENCFF001IDS, ENCFF001IDT, ENCFF001IDU, ENCFF001IDV, ENCFF018NEO 402355030 ENCODE Processing Pipeline 312e0810511dcc638f8a80dc996b67b6 https://www.encodeproject.org/files/ENCFF122QLV/@@download/ENCFF122QLV.bam mm10 released insufficient read depth, insufficient read length ENCFF194DXG bam alignments ENCSR000AIC ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGL, ENCFF001IGM, ENCFF001IGN, ENCFF001IGO, ENCFF001IGP, ENCFF001IGQ, ENCFF018NEO 615283563 ENCODE Processing Pipeline b002458df956692115f27295cffb0d66 https://www.encodeproject.org/files/ENCFF194DXG/@@download/ENCFF194DXG.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF772RIL bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KJA, ENCFF018NEO 407644590 ENCODE Processing Pipeline d0b2c7a27af772487ac4a8ecabaffe16 https://www.encodeproject.org/files/ENCFF772RIL/@@download/ENCFF772RIL.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF188XVF bam alignments ENCSR000CDG ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KIZ, ENCFF018NEO 390478766 ENCODE Processing Pipeline 92b52b5525d70962849395e92e02f11b https://www.encodeproject.org/files/ENCFF188XVF/@@download/ENCFF188XVF.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF609VXJ bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 713201107 ENCODE Processing Pipeline c81a15bd1992c2b93c2215e6cb7c8a45 https://www.encodeproject.org/files/ENCFF609VXJ/@@download/ENCFF609VXJ.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF839CIT bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1009588005 ENCODE Processing Pipeline 29ceb40f94999a433512f3f2232e4af1 https://www.encodeproject.org/files/ENCFF839CIT/@@download/ENCFF839CIT.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF640NNK bam alignments ENCSR000AIX ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2A-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFS, ENCFF001IFT, ENCFF018NEO 506340195 ENCODE Processing Pipeline 746fa4d169cd0596a9608a2a3d6e6a52 https://www.encodeproject.org/files/ENCFF640NNK/@@download/ENCFF640NNK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read length ENCFF019TTQ bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 36 ENCFF002DRA, ENCFF002DRD, ENCFF018NEO 1140868915 ENCODE Processing Pipeline bf2d5801f053ed548b672138fa07d75e https://www.encodeproject.org/files/ENCFF019TTQ/@@download/ENCFF019TTQ.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF771PAB bam alignments ENCSR698WCJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 36 ENCFF002DQY, ENCFF002DRC, ENCFF018NEO 977016104 ENCODE Processing Pipeline df73f1fb7120d763e675bbfe3774b197 https://www.encodeproject.org/files/ENCFF771PAB/@@download/ENCFF771PAB.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF871PQI bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF170JRT, ENCFF280OBC, ENCFF441BDB 3457983956 ENCODE Processing Pipeline e62675cb4b1677a9110604eb822116fa https://www.encodeproject.org/files/ENCFF871PQI/@@download/ENCFF871PQI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF677RAC bam alignments ENCSR282GAG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF213QFH, ENCFF683GIH 3070194011 ENCODE Processing Pipeline 94f315d889758b91c5e8662b580712fa https://www.encodeproject.org/files/ENCFF677RAC/@@download/ENCFF677RAC.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF293MTH bam alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF185WHY 1043471739 ENCODE Processing Pipeline fb529317cb69628929876cb2d42fa2ff https://www.encodeproject.org/files/ENCFF293MTH/@@download/ENCFF293MTH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF251WXG bam alignments ENCSR731KRE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF837FLC 1741518671 ENCODE Processing Pipeline 647e775a7702f95e649f99d67ba86356 https://www.encodeproject.org/files/ENCFF251WXG/@@download/ENCFF251WXG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF282ONU bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESS, ENCFF018NEO, ENCFF211QPE 1679733637 ENCODE Processing Pipeline a90073bba3e92b96dc7b3d307433a88f https://www.encodeproject.org/files/ENCFF282ONU/@@download/ENCFF282ONU.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF539SPH bam alignments ENCSR487OLC ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESV, ENCFF018NEO 1992625981 ENCODE Processing Pipeline 3fd548d645c62cd54cec9f735f71dcc5 https://www.encodeproject.org/files/ENCFF539SPH/@@download/ENCFF539SPH.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF867KIO bam alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF174LQN, ENCFF496DOX, ENCFF566UUW 1517801130 ENCODE Processing Pipeline 34ae5a7b3ee62cd42b8135573999b034 https://www.encodeproject.org/files/ENCFF867KIO/@@download/ENCFF867KIO.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF582AST bam alignments ENCSR906RTN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF091BUN, ENCFF145TFL, ENCFF797GFE 2138435720 ENCODE Processing Pipeline 99004831c798c0c4dec3a300da8a9a13 https://www.encodeproject.org/files/ENCFF582AST/@@download/ENCFF582AST.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF148BAU bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF226JKY, ENCFF565YDK 1245682985 ENCODE Processing Pipeline 11fb8200d491a255addb76080b977d80 https://www.encodeproject.org/files/ENCFF148BAU/@@download/ENCFF148BAU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF110BCP bam alignments ENCSR499NUH ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF168HAA, ENCFF452BON 1077834255 ENCODE Processing Pipeline a78c24ac9586d9482d6b76314b167ea0 https://www.encodeproject.org/files/ENCFF110BCP/@@download/ENCFF110BCP.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF039UQO bam alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF018NGQ 2138843722 ENCODE Processing Pipeline 0fd3ef9b6345f79dd7dfd05fb007364d https://www.encodeproject.org/files/ENCFF039UQO/@@download/ENCFF039UQO.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF407ATI bam alignments ENCSR242PHH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF603WTI, ENCFF987CWK 2659531396 ENCODE Processing Pipeline 82847a2a5beb8095282c68c00f48e347 https://www.encodeproject.org/files/ENCFF407ATI/@@download/ENCFF407ATI.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF025FVF bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF443RTP 1371725568 ENCODE Processing Pipeline d242ef23de7b4d39dc72b3023fb8ca15 https://www.encodeproject.org/files/ENCFF025FVF/@@download/ENCFF025FVF.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF052DTO bam alignments ENCSR257JSX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF538KES 1189116067 ENCODE Processing Pipeline 204479570c47ff6313aed588283c7364 https://www.encodeproject.org/files/ENCFF052DTO/@@download/ENCFF052DTO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF547GUP bam alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF612XSF 2220887323 ENCODE Processing Pipeline a366526e193847835916e44dcac079b0 https://www.encodeproject.org/files/ENCFF547GUP/@@download/ENCFF547GUP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF662MMA bam alignments ENCSR747ZXL ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF916TDC 2327905168 ENCODE Processing Pipeline c35e506c85f0544da49ba77ae23c36b8 https://www.encodeproject.org/files/ENCFF662MMA/@@download/ENCFF662MMA.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF113EPQ bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPJ, ENCFF018NEO 245469841 ENCODE Processing Pipeline 44730b6d4a3b4ada61264d35ef032be9 https://www.encodeproject.org/files/ENCFF113EPQ/@@download/ENCFF113EPQ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF905SDU bam alignments ENCSR000CBA ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPH, ENCFF018NEO 275112875 ENCODE Processing Pipeline 374643c1b57f8be07a79a3f73ea75802 https://www.encodeproject.org/files/ENCFF905SDU/@@download/ENCFF905SDU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF939RVY bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF377FPI 1575549245 ENCODE Processing Pipeline 89e1f6448660e39d0a4045776f6693ed https://www.encodeproject.org/files/ENCFF939RVY/@@download/ENCFF939RVY.bam mm10 released inconsistent platforms ENCFF114TCD bam alignments ENCSR929SEW ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF992ZDK 2011681956 ENCODE Processing Pipeline 0aa6487bcf0e168c0b373544b8c0e378 https://www.encodeproject.org/files/ENCFF114TCD/@@download/ENCFF114TCD.bam mm10 released inconsistent platforms ENCFF069APB bam alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF629KPS 953648619 ENCODE Processing Pipeline fc9c45e261a823daf6dff82739f2a6a8 https://www.encodeproject.org/files/ENCFF069APB/@@download/ENCFF069APB.bam mm10 released mild to moderate bottlenecking ENCFF113IBJ bam alignments ENCSR737JHU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF994NHO 1656116181 ENCODE Processing Pipeline 90061ee94d6176d7aeb4c7181dd67005 https://www.encodeproject.org/files/ENCFF113IBJ/@@download/ENCFF113IBJ.bam mm10 released mild to moderate bottlenecking ENCFF977HIL bam alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF604NXN 948777549 ENCODE Processing Pipeline 7f8d5298474b2a9499c0c3dbe95d65fa https://www.encodeproject.org/files/ENCFF977HIL/@@download/ENCFF977HIL.bam mm10 released mild to moderate bottlenecking ENCFF828JBJ bam alignments ENCSR769ITO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF347VNX 1337352661 ENCODE Processing Pipeline ca7a8d1c149e260a20e8b1e493d2184a https://www.encodeproject.org/files/ENCFF828JBJ/@@download/ENCFF828JBJ.bam mm10 released mild to moderate bottlenecking ENCFF881OBU bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KJU, ENCFF018NEO 570811298 ENCODE Processing Pipeline d6ed7ef0be77bc06621ed6a05bd2b580 https://www.encodeproject.org/files/ENCFF881OBU/@@download/ENCFF881OBU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF563LOO bam alignments ENCSR000CAF ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KJS, ENCFF018NEO 431747254 ENCODE Processing Pipeline 9269d5308e8369eeaffc560b2c7a061f https://www.encodeproject.org/files/ENCFF563LOO/@@download/ENCFF563LOO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF063LRW bam alignments ENCSR125ZWM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day Control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTM, ENCFF001NTP, ENCFF018NEO 1533474863 ENCODE Processing Pipeline 9f97a5b07907e6a74085b564ffb01904 https://www.encodeproject.org/files/ENCFF063LRW/@@download/ENCFF063LRW.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth for broad peaks control ENCFF592PLJ bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF143QHO 949627326 ENCODE Processing Pipeline 196ef54c4126f9d71f44b7ea17efe1d6 https://www.encodeproject.org/files/ENCFF592PLJ/@@download/ENCFF592PLJ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF605ZYA bam alignments ENCSR352NVU ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF130AYG, ENCFF777MGT 989229358 ENCODE Processing Pipeline 86ffb8702a0196243469974ba294d875 https://www.encodeproject.org/files/ENCFF605ZYA/@@download/ENCFF605ZYA.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF814DMW bam alignments ENCSR236UIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF747FRP 1391040425 ENCODE Processing Pipeline d1177c956a352e3b196903a1234ccf5e https://www.encodeproject.org/files/ENCFF814DMW/@@download/ENCFF814DMW.bam mm10 released insufficient read depth for broad peaks control ENCFF545AEW bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KPS, ENCFF018NEO 697336880 ENCODE Processing Pipeline bc85991ca16af327728e78c180fe077c https://www.encodeproject.org/files/ENCFF545AEW/@@download/ENCFF545AEW.bam mm10 released low read length, low read depth ENCFF161DPJ bam alignments ENCSR000CBB ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KPR, ENCFF018NEO 681864507 ENCODE Processing Pipeline 0ef7014ad5d6075bfed1b6656f7f5d8b https://www.encodeproject.org/files/ENCFF161DPJ/@@download/ENCFF161DPJ.bam mm10 released low read length, low read depth ENCFF135OCE bam alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF910GVN 1669901685 ENCODE Processing Pipeline 58d72ad68e8081b2d70928d4f5c9cba8 https://www.encodeproject.org/files/ENCFF135OCE/@@download/ENCFF135OCE.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF721KJH bam alignments ENCSR594JGI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF334SSJ 2323225956 ENCODE Processing Pipeline 4b7923d089dd179759afd3445441f021 https://www.encodeproject.org/files/ENCFF721KJH/@@download/ENCFF721KJH.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF626VEX bam alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF536ZIH 1070031101 ENCODE Processing Pipeline 47e79e4f602ce9145e9428e2dbc585c3 https://www.encodeproject.org/files/ENCFF626VEX/@@download/ENCFF626VEX.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF960QQM bam alignments ENCSR765JWZ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF114XWK 1862024473 ENCODE Processing Pipeline a9f44fcce949f6e2f326fce39f789581 https://www.encodeproject.org/files/ENCFF960QQM/@@download/ENCFF960QQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF122NZU bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BHA, ENCFF018NEO 621218548 ENCODE Processing Pipeline 8032f99b7d5f81952b698db52ebabce1 https://www.encodeproject.org/files/ENCFF122NZU/@@download/ENCFF122NZU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF664RRL bam alignments ENCSR115FTP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGH, ENCFF018NEO 802214902 ENCODE Processing Pipeline 198dcf9743ea3cd23686d5ce9ecbb83a https://www.encodeproject.org/files/ENCFF664RRL/@@download/ENCFF664RRL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth severe bottlenecking ENCFF296RQE bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 744187819 ENCODE Processing Pipeline c64db4250d7d72fae588cef8104b13e9 https://www.encodeproject.org/files/ENCFF296RQE/@@download/ENCFF296RQE.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF844MYB bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 677244030 ENCODE Processing Pipeline 321923a573d1d8fd575f0e37f8780d3e https://www.encodeproject.org/files/ENCFF844MYB/@@download/ENCFF844MYB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF778IFH bam alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF126KYO 2429855724 ENCODE Processing Pipeline a439251e8c67a8f7fa58ca0b96ba8713 https://www.encodeproject.org/files/ENCFF778IFH/@@download/ENCFF778IFH.bam mm10 released ENCFF689YLF bam alignments ENCSR776WPN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF814HQS 2456765503 ENCODE Processing Pipeline 4a5de0a72988628528b0ca6bec53ea0b https://www.encodeproject.org/files/ENCFF689YLF/@@download/ENCFF689YLF.bam mm10 released ENCFF344GQQ bam alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF892KDP 2494507891 ENCODE Processing Pipeline 7e2e4da6f774d1e7090ae4468088a688 https://www.encodeproject.org/files/ENCFF344GQQ/@@download/ENCFF344GQQ.bam mm10 released ENCFF181QWR bam alignments ENCSR191XBS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF366TEJ 2991473841 ENCODE Processing Pipeline f683b0a364334c5b045fb2d16251cf96 https://www.encodeproject.org/files/ENCFF181QWR/@@download/ENCFF181QWR.bam mm10 released ENCFF420QXG bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSZ, ENCFF018NEO 810119433 ENCODE Processing Pipeline d6fdc2fe924634791ee465907baa315a https://www.encodeproject.org/files/ENCFF420QXG/@@download/ENCFF420QXG.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF106DNK bam alignments ENCSR067ZDE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTC, ENCFF018NEO, ENCFF593DDG 463043541 ENCODE Processing Pipeline bd81004a68cb3a48a2a6334ec4cfa915 https://www.encodeproject.org/files/ENCFF106DNK/@@download/ENCFF106DNK.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF245OIS bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF879XFV, ENCFF947EDP 2758313492 ENCODE Processing Pipeline bb8c3a3d5387152824e941f06ddbb9e9 https://www.encodeproject.org/files/ENCFF245OIS/@@download/ENCFF245OIS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF389YBT bam alignments ENCSR872UEE ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF076IRY, ENCFF155LYM, ENCFF856YXG 2852644827 ENCODE Processing Pipeline b733474cd6416cb373be17b7ac168fa2 https://www.encodeproject.org/files/ENCFF389YBT/@@download/ENCFF389YBT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF893IOJ bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF890PHI, ENCFF974QSS 2514805851 ENCODE Processing Pipeline 375fd17961df577a17fd9605cbb6cafa https://www.encodeproject.org/files/ENCFF893IOJ/@@download/ENCFF893IOJ.bam mm10 released sequencing runs labeled as technical replicates ENCFF279URC bam alignments ENCSR742ZUI ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF573WFQ, ENCFF586JAL 2813654969 ENCODE Processing Pipeline fa7bd58daf95d2dced0618c425d7d4ae https://www.encodeproject.org/files/ENCFF279URC/@@download/ENCFF279URC.bam mm10 released sequencing runs labeled as technical replicates ENCFF053DHE bam alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF410JWH 2620580470 ENCODE Processing Pipeline bc7eb67069f1a5e1ebac7b03bdfb5f3b https://www.encodeproject.org/files/ENCFF053DHE/@@download/ENCFF053DHE.bam mm10 released mild to moderate bottlenecking ENCFF600FIR bam alignments ENCSR782DGO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF854EKF 2794806637 ENCODE Processing Pipeline 3cb11e244c7baca8042ce4d636b2bd3d https://www.encodeproject.org/files/ENCFF600FIR/@@download/ENCFF600FIR.bam mm10 released mild to moderate bottlenecking ENCFF561MSI bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF176UWV 1247346107 ENCODE Processing Pipeline 0cba3167e4b089988f54e766470ee9a5 https://www.encodeproject.org/files/ENCFF561MSI/@@download/ENCFF561MSI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF497ZYH bam alignments ENCSR895BMP ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF821LPZ 1363941363 ENCODE Processing Pipeline f2d736c144e5bacd0ba339ea887c625e https://www.encodeproject.org/files/ENCFF497ZYH/@@download/ENCFF497ZYH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF019KCC bam alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF278VQW 2497987571 ENCODE Processing Pipeline 4ab1e380831fd16fcfc7a443eb35a87d https://www.encodeproject.org/files/ENCFF019KCC/@@download/ENCFF019KCC.bam mm10 released ENCFF109KRV bam alignments ENCSR272GNQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF466CFM 2758492446 ENCODE Processing Pipeline 8430f1345bc9d30b0897ff061114b5e0 https://www.encodeproject.org/files/ENCFF109KRV/@@download/ENCFF109KRV.bam mm10 released ENCFF416MSB bam alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF803LSX 2613689206 ENCODE Processing Pipeline f03ecb77c71046d3da2d271a2cba66a7 https://www.encodeproject.org/files/ENCFF416MSB/@@download/ENCFF416MSB.bam mm10 released mild to moderate bottlenecking ENCFF170VVI bam alignments ENCSR608QBO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF277EWJ 2872197619 ENCODE Processing Pipeline 34988b51e20dcbea6a74f356d3d33ec0 https://www.encodeproject.org/files/ENCFF170VVI/@@download/ENCFF170VVI.bam mm10 released mild to moderate bottlenecking ENCFF040LTV bam alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF735DRJ 2512948997 ENCODE Processing Pipeline d43d3235ecc5cdeeffc31552d43cf51e https://www.encodeproject.org/files/ENCFF040LTV/@@download/ENCFF040LTV.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF372RCJ bam alignments ENCSR558NWQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF186DJM 2299620837 ENCODE Processing Pipeline 0b3597b4552017286781621bee2b237d https://www.encodeproject.org/files/ENCFF372RCJ/@@download/ENCFF372RCJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF643PMC bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ANZ, ENCFF018NEO 1263025814 ENCODE Processing Pipeline d8eaf4213febb4aa3e9a205858e48502 https://www.encodeproject.org/files/ENCFF643PMC/@@download/ENCFF643PMC.bam mm10 released ENCFF310VFG bam alignments ENCSR186PIV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOB, ENCFF018NEO 1545274965 ENCODE Processing Pipeline 09b5e492512aab1c67be46c859b44c6b https://www.encodeproject.org/files/ENCFF310VFG/@@download/ENCFF310VFG.bam mm10 released ENCFF996ELE bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMO, ENCFF018NEO 834959613 ENCODE Processing Pipeline e00487ed6a2d9d96c6b5bca81cc10c85 https://www.encodeproject.org/files/ENCFF996ELE/@@download/ENCFF996ELE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF527OOW bam alignments ENCSR669AQL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMR, ENCFF018NEO 951076235 ENCODE Processing Pipeline 0aa101deac044e0d6067e993e3bdc1b6 https://www.encodeproject.org/files/ENCFF527OOW/@@download/ENCFF527OOW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF012BNH bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSQ, ENCFF018NEO 926033146 ENCODE Processing Pipeline 415b3da81d11157be04f569a70a8726c https://www.encodeproject.org/files/ENCFF012BNH/@@download/ENCFF012BNH.bam mm10 released low read length ENCFF950CZX bam alignments ENCSR400TGE ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZST, ENCFF018NEO 1066817139 ENCODE Processing Pipeline 289b852c0252a3fef18a428fcce83ba6 https://www.encodeproject.org/files/ENCFF950CZX/@@download/ENCFF950CZX.bam mm10 released low read length ENCFF837CRH bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF131YVS, ENCFF580JZM 2924218788 ENCODE Processing Pipeline ea8dc04f42b75710b6cd51cb984e7541 https://www.encodeproject.org/files/ENCFF837CRH/@@download/ENCFF837CRH.bam mm10 released sequencing runs labeled as technical replicates ENCFF956XFI bam alignments ENCSR583ZEV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF037ZOC, ENCFF387BTM 2795972550 ENCODE Processing Pipeline fac211477b4f06c39dabfa72a69aac79 https://www.encodeproject.org/files/ENCFF956XFI/@@download/ENCFF956XFI.bam mm10 released sequencing runs labeled as technical replicates ENCFF439HJF bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRF, ENCFF018NEO 736331088 ENCODE Processing Pipeline d0a0ac2ae1c3f158ad3677aacbee1e87 https://www.encodeproject.org/files/ENCFF439HJF/@@download/ENCFF439HJF.bam mm10 released low read length, low read depth ENCFF393PYK bam alignments ENCSR275KPI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRD, ENCFF018NEO 769998415 ENCODE Processing Pipeline 88beaed7fe0451e1be32874f0d4c6a95 https://www.encodeproject.org/files/ENCFF393PYK/@@download/ENCFF393PYK.bam mm10 released low read length, low read depth ENCFF352PVF bam alignments ENCSR982SZZ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF197BDN 832494382 ENCODE Processing Pipeline 53f26a715a0db2a1e033c6387b05ced7 https://www.encodeproject.org/files/ENCFF352PVF/@@download/ENCFF352PVF.bam mm10 released insufficient read depth for broad peaks control ENCFF018NHJ bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KGA, ENCFF018NEO 627012377 ENCODE Processing Pipeline 02d002628596eddb38a24854f2cb9066 https://www.encodeproject.org/files/ENCFF018NHJ/@@download/ENCFF018NHJ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF043VXI bam alignments ENCSR000CGR ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KGE, ENCFF018NEO 380230556 ENCODE Processing Pipeline a36124c516bce907efc5c8fcd09ee387 https://www.encodeproject.org/files/ENCFF043VXI/@@download/ENCFF043VXI.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF262ALD bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KNL, ENCFF018NEO 253874073 ENCODE Processing Pipeline af41b2234694833f8fb32015db5be3b2 https://www.encodeproject.org/files/ENCFF262ALD/@@download/ENCFF262ALD.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF538SCQ bam alignments ENCSR000CAP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KNM, ENCFF018NEO 432072036 ENCODE Processing Pipeline 4d6fca43a410272e7b721ded0187cc8a https://www.encodeproject.org/files/ENCFF538SCQ/@@download/ENCFF538SCQ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth ENCFF669TDH bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 861135818 ENCODE Processing Pipeline 06492bff37c8cc8b15dafefc8d0d556b https://www.encodeproject.org/files/ENCFF669TDH/@@download/ENCFF669TDH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF748CWC bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1106721174 ENCODE Processing Pipeline 46516b80c0e373adce07483fda8b1f8c https://www.encodeproject.org/files/ENCFF748CWC/@@download/ENCFF748CWC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF288QPC bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXN, ENCFF018NEO 202154066 ENCODE Processing Pipeline 6372c05db61cf5c5a040faaf4aaccb14 https://www.encodeproject.org/files/ENCFF288QPC/@@download/ENCFF288QPC.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF942MHC bam alignments ENCSR000CCX ChIP-seq UBERON:0000473 testis tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXE, ENCFF018NEO 132905874 ENCODE Processing Pipeline b91c8926bd4401bdeca970a99ffe3de1 https://www.encodeproject.org/files/ENCFF942MHC/@@download/ENCFF942MHC.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF913ZAZ bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF144QAH 1441054136 ENCODE Processing Pipeline ec20bcb6d1f157789d121a5b40453762 https://www.encodeproject.org/files/ENCFF913ZAZ/@@download/ENCFF913ZAZ.bam mm10 released mild to moderate bottlenecking ENCFF708TFR bam alignments ENCSR966AIB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF468OSP 1374950066 ENCODE Processing Pipeline 95d937ea9e516d17f707c3f1bcae2338 https://www.encodeproject.org/files/ENCFF708TFR/@@download/ENCFF708TFR.bam mm10 released mild to moderate bottlenecking ENCFF541VHX bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFP, ENCFF018NEO 928016772 ENCODE Processing Pipeline b0dc033a835f2995ac751826a12719ff https://www.encodeproject.org/files/ENCFF541VHX/@@download/ENCFF541VHX.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF498EVF bam alignments ENCSR616TJM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFM, ENCFF018NEO 944826561 ENCODE Processing Pipeline 75847fd9e2d4b35e0178a25a3e5f8a98 https://www.encodeproject.org/files/ENCFF498EVF/@@download/ENCFF498EVF.bam mm10 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption, low read depth ENCFF426YVP bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 774278149 ENCODE Processing Pipeline 236270dfa40cac52b57e7b8796122888 https://www.encodeproject.org/files/ENCFF426YVP/@@download/ENCFF426YVP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF173QJM bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 742358878 ENCODE Processing Pipeline 82f466cac9aa497b28e9b2ef5ce58e80 https://www.encodeproject.org/files/ENCFF173QJM/@@download/ENCFF173QJM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF995CCN bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF006QVS, ENCFF018NEO 1220930302 ENCODE Processing Pipeline a374d028f156acf13f0a0505069ca6df https://www.encodeproject.org/files/ENCFF995CCN/@@download/ENCFF995CCN.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF575NHJ bam alignments ENCSR036YKL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF278KMG 1339850913 ENCODE Processing Pipeline a53b4a48f59a90de3dd58e40ed902cec https://www.encodeproject.org/files/ENCFF575NHJ/@@download/ENCFF575NHJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF343MDQ bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJI, ENCFF018NEO 599616570 ENCODE Processing Pipeline c879cb186031b091aab6caf24b400ccc https://www.encodeproject.org/files/ENCFF343MDQ/@@download/ENCFF343MDQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF070XFW bam alignments ENCSR000CFP ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJJ, ENCFF018NEO 760463283 ENCODE Processing Pipeline 86b6330cdd67624fbc5813fbf7ef3fc9 https://www.encodeproject.org/files/ENCFF070XFW/@@download/ENCFF070XFW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF215ELT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 1356812453 ENCODE Processing Pipeline 75c1928dbd2e6d482ac1225602aa9997 https://www.encodeproject.org/files/ENCFF215ELT/@@download/ENCFF215ELT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF334CYT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1201426132 ENCODE Processing Pipeline 8f9bdd97a5dd54b465201561a94a534a https://www.encodeproject.org/files/ENCFF334CYT/@@download/ENCFF334CYT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF741BBU bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF318AFJ 2110386060 ENCODE Processing Pipeline d151c23a3dc80ae747e22feb9568f3f3 https://www.encodeproject.org/files/ENCFF741BBU/@@download/ENCFF741BBU.bam mm10 released sequencing runs labeled as technical replicates ENCFF563KVK bam alignments ENCSR523QKO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF078SMC, ENCFF788YDC 2439910309 ENCODE Processing Pipeline f40bf651a8bf1396e38fded83808b508 https://www.encodeproject.org/files/ENCFF563KVK/@@download/ENCFF563KVK.bam mm10 released sequencing runs labeled as technical replicates ENCFF026JTV bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVB, ENCFF018NEO 631436874 ENCODE Processing Pipeline 30113fe36cc734075f0f5eed6155439e https://www.encodeproject.org/files/ENCFF026JTV/@@download/ENCFF026JTV.bam mm10 released low read length, low read depth ENCFF627JLU bam alignments ENCSR563WKD ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUX, ENCFF018NEO 510648401 ENCODE Processing Pipeline 842d6104f4aa1522e970aeee10bcce0f https://www.encodeproject.org/files/ENCFF627JLU/@@download/ENCFF627JLU.bam mm10 released low read length, low read depth ENCFF400HUF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 84582263 ENCODE Processing Pipeline 18413e52acf78c1e2555cf61a82f5702 https://www.encodeproject.org/files/ENCFF400HUF/@@download/ENCFF400HUF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF757SUN bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 308947255 ENCODE Processing Pipeline 5f4d44da85b63066d46815cf08cfe33c https://www.encodeproject.org/files/ENCFF757SUN/@@download/ENCFF757SUN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF266CNS bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF411WFC 1365133381 ENCODE Processing Pipeline 9c35ca356e5f6efb05404bfba5554af3 https://www.encodeproject.org/files/ENCFF266CNS/@@download/ENCFF266CNS.bam mm10 released mild to moderate bottlenecking ENCFF014TDL bam alignments ENCSR554TSO ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF827MLN 1633167396 ENCODE Processing Pipeline b681b0e96f20467cb80ebca2be89d5b4 https://www.encodeproject.org/files/ENCFF014TDL/@@download/ENCFF014TDL.bam mm10 released mild to moderate bottlenecking ENCFF861QSV bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF792BEX 1567344410 ENCODE Processing Pipeline e0e7be52ea70d2743ed6c83195983ff2 https://www.encodeproject.org/files/ENCFF861QSV/@@download/ENCFF861QSV.bam mm10 released mild to moderate bottlenecking ENCFF143TPR bam alignments ENCSR943QUH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF293WNC 1660921591 ENCODE Processing Pipeline 9f5904954563bbca576ff7cf90c079de https://www.encodeproject.org/files/ENCFF143TPR/@@download/ENCFF143TPR.bam mm10 released mild to moderate bottlenecking ENCFF874RFY bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF248LJY, ENCFF391TJE 2715110577 ENCODE Processing Pipeline d6e90ee25f4e0c164ef29003b0149741 https://www.encodeproject.org/files/ENCFF874RFY/@@download/ENCFF874RFY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF686DEV bam alignments ENCSR087JEN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF219CDV, ENCFF693KKN, ENCFF990VQL 2481495924 ENCODE Processing Pipeline 2c3bf5413530575e7b7fce2605fe4749 https://www.encodeproject.org/files/ENCFF686DEV/@@download/ENCFF686DEV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF010EXO bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUT, ENCFF018NEO 582067980 ENCODE Processing Pipeline 052c0fc878ce9af46a372270fbe3fd9d https://www.encodeproject.org/files/ENCFF010EXO/@@download/ENCFF010EXO.bam mm10 released low read length, low read depth ENCFF804FRH bam alignments ENCSR573MJR ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUU, ENCFF018NEO 562130177 ENCODE Processing Pipeline 9e096248db434185938d303c4f81b11c https://www.encodeproject.org/files/ENCFF804FRH/@@download/ENCFF804FRH.bam mm10 released low read length, low read depth ENCFF921ADB bam alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHB, ENCFF018NEO 1082061174 ENCODE Processing Pipeline 1a00bad646786f03477e9f5fb8953a99 https://www.encodeproject.org/files/ENCFF921ADB/@@download/ENCFF921ADB.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF906MEI bam alignments ENCSR790LOX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHE, ENCFF018NEO, ENCFF498BDE 1145717924 ENCODE Processing Pipeline b5b5e52731e8046ebf0ac4e100d708f4 https://www.encodeproject.org/files/ENCFF906MEI/@@download/ENCFF906MEI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF549CKG bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF257YNR, ENCFF331VLT 1995409984 ENCODE Processing Pipeline 4c8ef8853f5769cee0e9e90e93cd8618 https://www.encodeproject.org/files/ENCFF549CKG/@@download/ENCFF549CKG.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF517LTD bam alignments ENCSR094QZC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF853YXL 2990636152 ENCODE Processing Pipeline 09d9f048e0f0fd3c728e6dd47e743221 https://www.encodeproject.org/files/ENCFF517LTD/@@download/ENCFF517LTD.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF052SGY bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXL, ENCFF018NEO 582473425 ENCODE Processing Pipeline 14d1b48688a686f97715dea32a03f968 https://www.encodeproject.org/files/ENCFF052SGY/@@download/ENCFF052SGY.bam mm10 released low read length, low read depth ENCFF488PXJ bam alignments ENCSR587JRQ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXM, ENCFF018NEO 629047829 ENCODE Processing Pipeline cf2bdb9bf50dfb3deeaa4e7a5e7729eb https://www.encodeproject.org/files/ENCFF488PXJ/@@download/ENCFF488PXJ.bam mm10 released low read length, low read depth ENCFF809PGZ bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF319CNO, ENCFF525DSW 1993658651 ENCODE Processing Pipeline b16c8c533778f3b83e25792f07f36a0c https://www.encodeproject.org/files/ENCFF809PGZ/@@download/ENCFF809PGZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF815BRW bam alignments ENCSR233LBT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF371VHS 2442104883 ENCODE Processing Pipeline f759dce47f01d2838eba7abc969910fd https://www.encodeproject.org/files/ENCFF815BRW/@@download/ENCFF815BRW.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF060JKD bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF393EAJ, ENCFF731RTD 2445503245 ENCODE Processing Pipeline 065ecaf8cf4f4eb0a89f06267772df30 https://www.encodeproject.org/files/ENCFF060JKD/@@download/ENCFF060JKD.bam mm10 released sequencing runs labeled as technical replicates ENCFF884PDZ bam alignments ENCSR077QRY ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF490LBM, ENCFF545UQA, ENCFF972QSB 2468239767 ENCODE Processing Pipeline 37b900d675dca123aa8a5c692a2daba4 https://www.encodeproject.org/files/ENCFF884PDZ/@@download/ENCFF884PDZ.bam mm10 released sequencing runs labeled as technical replicates ENCFF847EJM bam alignments ENCSR999LAC ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 50 ENCFF018NEO, ENCFF331QQL 970731188 ENCODE Processing Pipeline cf27ca4a3a6a2906818293ba1f444012 https://www.encodeproject.org/files/ENCFF847EJM/@@download/ENCFF847EJM.bam mm10 released low read depth ENCFF446WFN bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQC, ENCFF018NEO 618400882 ENCODE Processing Pipeline e1d7f9fc033c42c84959dc0fc4041e2d https://www.encodeproject.org/files/ENCFF446WFN/@@download/ENCFF446WFN.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF032AWP bam alignments ENCSR091DHJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQE, ENCFF018NEO 866618751 ENCODE Processing Pipeline c1de2a2326f1d73149e9a1bea430df59 https://www.encodeproject.org/files/ENCFF032AWP/@@download/ENCFF032AWP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF390ZQV bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 747012839 ENCODE Processing Pipeline 281880213c6a21380a29653b3ddb1c64 https://www.encodeproject.org/files/ENCFF390ZQV/@@download/ENCFF390ZQV.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF371TUB bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 776530302 ENCODE Processing Pipeline e448db6f7692c2f59352bfe6b409de7d https://www.encodeproject.org/files/ENCFF371TUB/@@download/ENCFF371TUB.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF855ISH bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXY, ENCFF018NEO 639848145 ENCODE Processing Pipeline c0e788016ebf6bcc853aaa3b372285f2 https://www.encodeproject.org/files/ENCFF855ISH/@@download/ENCFF855ISH.bam mm10 released low read length, low read depth ENCFF018HYW bam alignments ENCSR559FAB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BYA, ENCFF018NEO 621756686 ENCODE Processing Pipeline f98c118b706ae1d6b3b363968a146fec https://www.encodeproject.org/files/ENCFF018HYW/@@download/ENCFF018HYW.bam mm10 released low read length, low read depth ENCFF864RQD bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF346EBC 1950940304 ENCODE Processing Pipeline fd0bc2d328799ed617f1fa2bf73f64ee https://www.encodeproject.org/files/ENCFF864RQD/@@download/ENCFF864RQD.bam mm10 released mild to moderate bottlenecking ENCFF666HAV bam alignments ENCSR104PWP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF936ZZV 2268926643 ENCODE Processing Pipeline 7b5fe31f2257f83ae1f582e58dfd6072 https://www.encodeproject.org/files/ENCFF666HAV/@@download/ENCFF666HAV.bam mm10 released mild to moderate bottlenecking ENCFF110KFL bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF613VJI 1073684898 ENCODE Processing Pipeline affef4bb45ac56a211ea2c76beed4758 https://www.encodeproject.org/files/ENCFF110KFL/@@download/ENCFF110KFL.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF773CUR bam alignments ENCSR110MSZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF010LWJ, ENCFF018NEO 1619691580 ENCODE Processing Pipeline 584cdba763b30715239b883046fc4a04 https://www.encodeproject.org/files/ENCFF773CUR/@@download/ENCFF773CUR.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF825KCM bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 441844616 ENCODE Processing Pipeline 3fa493bdb8ab2426f4967d0870b52178 https://www.encodeproject.org/files/ENCFF825KCM/@@download/ENCFF825KCM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF015RVC bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 611716522 ENCODE Processing Pipeline 5a5a1d22defa4d692dd0ae3690f4bc5f https://www.encodeproject.org/files/ENCFF015RVC/@@download/ENCFF015RVC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF345GFJ bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF121DFO, ENCFF742ZUV 2061837434 ENCODE Processing Pipeline 542882be58bfea9ff3f3942eb1c5a11e https://www.encodeproject.org/files/ENCFF345GFJ/@@download/ENCFF345GFJ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF474ZIJ bam alignments ENCSR508HYL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF764TPO 2126878374 ENCODE Processing Pipeline 99a800d2e1cb326f3f0bd59cb98038d5 https://www.encodeproject.org/files/ENCFF474ZIJ/@@download/ENCFF474ZIJ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF555OYI bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF376KBS 693110880 ENCODE Processing Pipeline 2eb54f6374847cca6e1711ac2f0d409a https://www.encodeproject.org/files/ENCFF555OYI/@@download/ENCFF555OYI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF095OCL bam alignments ENCSR972MRN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF251VUY 644432538 ENCODE Processing Pipeline d747738273c02ce5898aaa4c6d3950ab https://www.encodeproject.org/files/ENCFF095OCL/@@download/ENCFF095OCL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF161BYI bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTI, ENCFF018NEO 1178293484 ENCODE Processing Pipeline 0c2612c02a6606bab18fab3a38416541 https://www.encodeproject.org/files/ENCFF161BYI/@@download/ENCFF161BYI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF032PSJ bam alignments ENCSR066LZB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DSZ, ENCFF002DTA, ENCFF018NEO, ENCFF897PBA 1098695715 ENCODE Processing Pipeline 88c78956258e0856afb57a3ca37711d1 https://www.encodeproject.org/files/ENCFF032PSJ/@@download/ENCFF032PSJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF086VAQ bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF491IVJ 979888946 ENCODE Processing Pipeline 194ad3774c6d9b82e27d2ab96a56dd59 https://www.encodeproject.org/files/ENCFF086VAQ/@@download/ENCFF086VAQ.bam mm10 released low read length control insufficient read depth ENCFF506ZWN bam alignments ENCSR122CJZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF101MJS 953432161 ENCODE Processing Pipeline a66f81ff44157169b5e868038ba66c6e https://www.encodeproject.org/files/ENCFF506ZWN/@@download/ENCFF506ZWN.bam mm10 released low read length control insufficient read depth ENCFF990ZQH bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF566NFW 3137495852 ENCODE Processing Pipeline 54257437823136acec4f92de81fed3c4 https://www.encodeproject.org/files/ENCFF990ZQH/@@download/ENCFF990ZQH.bam mm10 released inconsistent platforms ENCFF670RVW bam alignments ENCSR051CUH ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF861WQV 2957780071 ENCODE Processing Pipeline bf087a12b300453957b8f64f3c6fb494 https://www.encodeproject.org/files/ENCFF670RVW/@@download/ENCFF670RVW.bam mm10 released inconsistent platforms ENCFF781DUP bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF015ETA, ENCFF018NEO, ENCFF695ITS 2315156865 ENCODE Processing Pipeline 36bd590545316c4d07e44de7a866c322 https://www.encodeproject.org/files/ENCFF781DUP/@@download/ENCFF781DUP.bam mm10 released sequencing runs labeled as technical replicates ENCFF548IIV bam alignments ENCSR415FCU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF031RLD, ENCFF419PTI 2255018175 ENCODE Processing Pipeline 47d9947365d7ce806820d1bd3eaa27a3 https://www.encodeproject.org/files/ENCFF548IIV/@@download/ENCFF548IIV.bam mm10 released sequencing runs labeled as technical replicates ENCFF461JUO bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXP, ENCFF018NEO 668155923 ENCODE Processing Pipeline 2023b38ac3f7d116beab9b557ab072a2 https://www.encodeproject.org/files/ENCFF461JUO/@@download/ENCFF461JUO.bam mm10 released low read length, low read depth ENCFF276TCT bam alignments ENCSR685AMF ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXQ, ENCFF018NEO 576099097 ENCODE Processing Pipeline 3598924a9611d873f04b5aee3925aa00 https://www.encodeproject.org/files/ENCFF276TCT/@@download/ENCFF276TCT.bam mm10 released low read length, low read depth ENCFF894UZN bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF009WNY, ENCFF017YUR, ENCFF018NEO 1479628992 ENCODE Processing Pipeline 5b9fad25b709ab0595713f82edfb6b03 https://www.encodeproject.org/files/ENCFF894UZN/@@download/ENCFF894UZN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF011YLZ bam alignments ENCSR028ZHS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF275UAH 1230936178 ENCODE Processing Pipeline 9a45a8e3417fb81e17e234216c5669e8 https://www.encodeproject.org/files/ENCFF011YLZ/@@download/ENCFF011YLZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF174UCS bam alignments ENCSR655KFC ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF853NEA 1205096189 ENCODE Processing Pipeline 0e6e9324c9b4fce57bec207dc38d6721 https://www.encodeproject.org/files/ENCFF174UCS/@@download/ENCFF174UCS.bam mm10 released insufficient read depth for broad peaks control ENCFF842AGG bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 557404609 ENCODE Processing Pipeline 082ee9c5e110298e08badecab65b9af5 https://www.encodeproject.org/files/ENCFF842AGG/@@download/ENCFF842AGG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF694NOV bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 596562091 ENCODE Processing Pipeline 6e2d8f77d0036201f73c0c6faa7a5307 https://www.encodeproject.org/files/ENCFF694NOV/@@download/ENCFF694NOV.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF127OCQ bam alignments ENCSR000AHV ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K36me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBU, ENCFF018NEO 1037924037 ENCODE Processing Pipeline 7ffd92e2fcb0d1e5eccf4dd032d359d6 https://www.encodeproject.org/files/ENCFF127OCQ/@@download/ENCFF127OCQ.bam mm10 released insufficient read depth, control insufficient read depth ENCFF413NTF bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF749CTY 1842954644 ENCODE Processing Pipeline 20adba59f913b85e3361392dc002eb75 https://www.encodeproject.org/files/ENCFF413NTF/@@download/ENCFF413NTF.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF156DKT bam alignments ENCSR066XFL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF794KXJ 1993244807 ENCODE Processing Pipeline 5f08ec30a39ce2d33ee0f2b29b3b6982 https://www.encodeproject.org/files/ENCFF156DKT/@@download/ENCFF156DKT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF373MQG bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 543166914 ENCODE Processing Pipeline 67d87bcdc3f8d10a09771a801059a7bc https://www.encodeproject.org/files/ENCFF373MQG/@@download/ENCFF373MQG.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF894XUQ bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 1412738132 ENCODE Processing Pipeline 8accab6420c95f2dbd6a346bcce20a0c https://www.encodeproject.org/files/ENCFF894XUQ/@@download/ENCFF894XUQ.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF927UUZ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 754294637 ENCODE Processing Pipeline c14a9d5f0e4b62be5177749d8da5736a https://www.encodeproject.org/files/ENCFF927UUZ/@@download/ENCFF927UUZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF316DIJ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 698509644 ENCODE Processing Pipeline 5dd6c6f86d1527d5248128e8b9fe185c https://www.encodeproject.org/files/ENCFF316DIJ/@@download/ENCFF316DIJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF576UTL bam alignments ENCSR000AIJ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus CTCF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IDG, ENCFF001IDH, ENCFF018NEO 288637574 ENCODE Processing Pipeline 3018c323e485490fe662d3bb143736df https://www.encodeproject.org/files/ENCFF576UTL/@@download/ENCFF576UTL.bam mm10 released insufficient read depth, insufficient read length, control insufficient read depth ENCFF218WWW bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF084WKN, ENCFF411ZWQ 986851819 ENCODE Processing Pipeline f14e016aae2ce0fe0ecf75e9bbdcaa81 https://www.encodeproject.org/files/ENCFF218WWW/@@download/ENCFF218WWW.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF778SLY bam alignments ENCSR123MLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF030JLO 1142852414 ENCODE Processing Pipeline a8360777b9991626a6dcbf4c6418cb7e https://www.encodeproject.org/files/ENCFF778SLY/@@download/ENCFF778SLY.bam mm10 released mild to moderate bottlenecking, moderate library complexity sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF201HRC bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 2 50 ENCFF018NEO, ENCFF614SSQ 2402885445 ENCODE Processing Pipeline cf13a0e484075e09e4f3731f345ca1e3 https://www.encodeproject.org/files/ENCFF201HRC/@@download/ENCFF201HRC.bam mm10 released mild to moderate bottlenecking ENCFF530EYP bam alignments ENCSR122HLY ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-04-22 ENCODE 1 50 ENCFF018NEO, ENCFF991BUI 2311189417 ENCODE Processing Pipeline e3da786d5fe9e9544d18a1d4926a701e https://www.encodeproject.org/files/ENCFF530EYP/@@download/ENCFF530EYP.bam mm10 released mild to moderate bottlenecking ENCFF190AAQ bam alignments ENCSR000AHS ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAC, ENCFF018NEO 823414562 ENCODE Processing Pipeline f66158877b64e22b998824b9e2221b0a https://www.encodeproject.org/files/ENCFF190AAQ/@@download/ENCFF190AAQ.bam mm10 released control low read depth, low read depth ENCFF465JRB bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MNC, ENCFF018NEO 1392899822 ENCODE Processing Pipeline 8dd163a10e4cf164b8ea5cf1cfbf8d67 https://www.encodeproject.org/files/ENCFF465JRB/@@download/ENCFF465JRB.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF805RXV bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 3 41 ENCFF001MNJ, ENCFF018NEO 3454386114 ENCODE Processing Pipeline 3e56737ce6408a0b5f178c5d4d8cd17a https://www.encodeproject.org/files/ENCFF805RXV/@@download/ENCFF805RXV.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF826PSX bam alignments ENCSR000DIB ChIP-seq CL:0000765 erythroblast primary cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MNL, ENCFF018NEO 3474373950 ENCODE Processing Pipeline faca4a6e77de7d6cbb9abc8de6a7f412 https://www.encodeproject.org/files/ENCFF826PSX/@@download/ENCFF826PSX.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF670HMJ bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTG, ENCFF018NEO 344478412 ENCODE Processing Pipeline 1deb1953f353f9ce994c66c74766293f https://www.encodeproject.org/files/ENCFF670HMJ/@@download/ENCFF670HMJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF359OGF bam alignments ENCSR000CEH ChIP-seq UBERON:0000955 brain tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTF, ENCFF018NEO 131584552 ENCODE Processing Pipeline 2695302c830392a04ca60085c410d673 https://www.encodeproject.org/files/ENCFF359OGF/@@download/ENCFF359OGF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF770ANH bam alignments ENCSR000AIH ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHI, ENCFF001IHJ, ENCFF018NEO 928256450 ENCODE Processing Pipeline 9c0dda646d1252e82b42c5570e0f20e4 https://www.encodeproject.org/files/ENCFF770ANH/@@download/ENCFF770ANH.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read length ENCFF796VLK bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF338GBK 1124931771 ENCODE Processing Pipeline 64d1732276b3f14f7d0db9dbff4e17bc https://www.encodeproject.org/files/ENCFF796VLK/@@download/ENCFF796VLK.bam mm10 released mild to moderate bottlenecking ENCFF033BAT bam alignments ENCSR938MUD ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF189NBW 1307997737 ENCODE Processing Pipeline 29ae8a1302cd7648e424ea0feb243ea8 https://www.encodeproject.org/files/ENCFF033BAT/@@download/ENCFF033BAT.bam mm10 released mild to moderate bottlenecking ENCFF980ZBF bam alignments ENCSR000AJT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus Control-mouse DNA 0 see document False 2012-05-11 ENCODE 1 36 ENCFF001IEU, ENCFF018NEO 837118314 ENCODE Processing Pipeline 3c971f7922ef5b061a1db853d8f9451d https://www.encodeproject.org/files/ENCFF980ZBF/@@download/ENCFF980ZBF.bam mm10 released low read length, low read depth ENCFF905YWG bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 452391859 ENCODE Processing Pipeline ff1f81ad9b9f53cea1c356ce05020d53 https://www.encodeproject.org/files/ENCFF905YWG/@@download/ENCFF905YWG.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF307YNO bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 557062983 ENCODE Processing Pipeline 8343fb22ba8ad20ee322754e4eec2f7a https://www.encodeproject.org/files/ENCFF307YNO/@@download/ENCFF307YNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF940VSO bam alignments ENCSR000AJO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA see document False 2011-11-23 ENCODE 1 36 ENCFF001IEV, ENCFF018NEO 940604394 ENCODE Processing Pipeline 6aa5d89a36210a89155ea06581baf4f0 https://www.encodeproject.org/files/ENCFF940VSO/@@download/ENCFF940VSO.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF147NVK bam alignments ENCSR000AIL ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MAX-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IGF, ENCFF018NEO 764869572 ENCODE Processing Pipeline 0dd1a4fe44f1ae59300f4f2ea4654aec https://www.encodeproject.org/files/ENCFF147NVK/@@download/ENCFF147NVK.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth ENCFF137QVL bam alignments ENCSR000AHO ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBG, ENCFF018NEO 387554274 ENCODE Processing Pipeline 694f74af6cdf9ecb65f9af4236493553 https://www.encodeproject.org/files/ENCFF137QVL/@@download/ENCFF137QVL.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF998UML bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 560825794 ENCODE Processing Pipeline 20194d266192acaa9963175bd50d390a https://www.encodeproject.org/files/ENCFF998UML/@@download/ENCFF998UML.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF748PAR bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 544126312 ENCODE Processing Pipeline 860d2d16bc7a0defafb5df1bef72e4b9 https://www.encodeproject.org/files/ENCFF748PAR/@@download/ENCFF748PAR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF302FXR bam alignments ENCSR000AIP ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF3-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IIH, ENCFF001III, ENCFF018NEO 440111743 ENCODE Processing Pipeline 7c09d69a9b16b08023d9dbaeb56dead6 https://www.encodeproject.org/files/ENCFF302FXR/@@download/ENCFF302FXR.bam mm10 released control low read depth insufficient read depth, insufficient read length ENCFF727WYC bam alignments ENCSR000AIN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus TCF12-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIU, ENCFF018NEO 418562487 ENCODE Processing Pipeline 8291bdc2cbcc597d4d289760b8b1f990 https://www.encodeproject.org/files/ENCFF727WYC/@@download/ENCFF727WYC.bam mm10 released mild to moderate bottlenecking, control low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF543SHJ bam alignments ENCSR000AIQ ChIP-seq EFO:0001098 C2C12 cell line Mus musculus USF1-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001IIY, ENCFF018NEO 841845838 ENCODE Processing Pipeline 6c5b1ed70b61dc20541c2f0d340e22fd https://www.encodeproject.org/files/ENCFF543SHJ/@@download/ENCFF543SHJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF204AZL bam alignments ENCSR000AIR ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOD1-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHC, ENCFF001IHD, ENCFF001IHE, ENCFF018NEO 658741352 ENCODE Processing Pipeline 8f84f747b974676c4a23d4d482607fc0 https://www.encodeproject.org/files/ENCFF204AZL/@@download/ENCFF204AZL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF543QFQ bam alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF965ADO 1644612668 ENCODE Processing Pipeline a521afafda394bbc9bc142db41d4d84c https://www.encodeproject.org/files/ENCFF543QFQ/@@download/ENCFF543QFQ.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF596FFU bam alignments ENCSR455REA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF394QOQ 1593340072 ENCODE Processing Pipeline f60333b1c67fc88524d99fe859e58937 https://www.encodeproject.org/files/ENCFF596FFU/@@download/ENCFF596FFU.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF284ATY bam alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 2 ENCFF018NEO, ENCFF728NKV 1585068327 ENCODE Processing Pipeline ca7228735fcda4bb6bbc7fe1565cb575 https://www.encodeproject.org/files/ENCFF284ATY/@@download/ENCFF284ATY.bam mm10 released mild to moderate bottlenecking ENCFF213UUJ bam alignments ENCSR890ACP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-07-12 ENCODE 1 ENCFF018NEO, ENCFF302BNP 1780749500 ENCODE Processing Pipeline ca568459a320474608dbd65013f31ee8 https://www.encodeproject.org/files/ENCFF213UUJ/@@download/ENCFF213UUJ.bam mm10 released mild to moderate bottlenecking ENCFF319ZGT bam alignments ENCSR000AJP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus Control-mouse DNA 0 see document False 2011-11-23 ENCODE 1 32 ENCFF001IEG, ENCFF001IEH, ENCFF001IEI, ENCFF018NEO 433472947 ENCODE Processing Pipeline f02f85c71134bc2f4df56037aace7f08 https://www.encodeproject.org/files/ENCFF319ZGT/@@download/ENCFF319ZGT.bam mm10 released insufficient read depth, insufficient read length ENCFF598SHY bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHF, ENCFF018NEO 900088296 ENCODE Processing Pipeline bb15cbcbf26a5723b4c57dc43213b0ba https://www.encodeproject.org/files/ENCFF598SHY/@@download/ENCFF598SHY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF837AZO bam alignments ENCSR564JKR ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGY, ENCFF006CCL, ENCFF018NEO 1146160915 ENCODE Processing Pipeline 769216ea7f5d272c6dc806068af4940f https://www.encodeproject.org/files/ENCFF837AZO/@@download/ENCFF837AZO.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF785LLE bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF079ZSP 1055841752 ENCODE Processing Pipeline 36e219b43f245553fd5866b8273900fc https://www.encodeproject.org/files/ENCFF785LLE/@@download/ENCFF785LLE.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF966EXV bam alignments ENCSR465TIZ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF820CUO, ENCFF898OWK 1617073845 ENCODE Processing Pipeline f13c2b6d986ccbdbad1ba70353b330ae https://www.encodeproject.org/files/ENCFF966EXV/@@download/ENCFF966EXV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF499UBG bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF226BJP 1010005335 ENCODE Processing Pipeline 5cc62f2701ac6cc007e99f10267b8379 https://www.encodeproject.org/files/ENCFF499UBG/@@download/ENCFF499UBG.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF771ZYB bam alignments ENCSR358XYP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF743GSO 1201337833 ENCODE Processing Pipeline 34201d8876777f758a27991bb2eb8316 https://www.encodeproject.org/files/ENCFF771ZYB/@@download/ENCFF771ZYB.bam mm10 released low read length, control low read depth control insufficient read depth ENCFF905PUB bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF835FWW, ENCFF927HRQ 3104809019 ENCODE Processing Pipeline b4e8cadfb9de9f3637efbeb73265e7bf https://www.encodeproject.org/files/ENCFF905PUB/@@download/ENCFF905PUB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF838YSJ bam alignments ENCSR510CGB ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF255APX, ENCFF373VWC, ENCFF892ULL 2860764751 ENCODE Processing Pipeline 017efe191a6b6935b9bb5c67840cfc48 https://www.encodeproject.org/files/ENCFF838YSJ/@@download/ENCFF838YSJ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF308QYS bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSU, ENCFF018NEO 181143176 ENCODE Processing Pipeline c7536dd2ac021047a350a8c043f7f9af https://www.encodeproject.org/files/ENCFF308QYS/@@download/ENCFF308QYS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF392SGZ bam alignments ENCSR000CDQ ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KSR, ENCFF018NEO 183201264 ENCODE Processing Pipeline afebbfd0a3becbf26d11599110d4c97d https://www.encodeproject.org/files/ENCFF392SGZ/@@download/ENCFF392SGZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity ENCFF380FIJ bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF018NEO, ENCFF306TWP 1070962642 ENCODE Processing Pipeline 847d9161023e165361861c07da81706a https://www.encodeproject.org/files/ENCFF380FIJ/@@download/ENCFF380FIJ.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF740KNN bam alignments ENCSR579UVB ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF018NEO, ENCFF179YKG, ENCFF933GIU 991404571 ENCODE Processing Pipeline f841245116007d089d34980b0a9c4804 https://www.encodeproject.org/files/ENCFF740KNN/@@download/ENCFF740KNN.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF427KEM bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 587971203 ENCODE Processing Pipeline b101ed07ed6be0471a88178ed0ce7d49 https://www.encodeproject.org/files/ENCFF427KEM/@@download/ENCFF427KEM.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF325VBN bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 785943349 ENCODE Processing Pipeline 904931ab9c2578e9b518f611c52a086c https://www.encodeproject.org/files/ENCFF325VBN/@@download/ENCFF325VBN.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF633VWI bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMD, ENCFF018NEO 663864784 ENCODE Processing Pipeline df0f3306cdd1e7c1140480022a98c239 https://www.encodeproject.org/files/ENCFF633VWI/@@download/ENCFF633VWI.bam mm10 released low read length, control low read depth, low read depth ENCFF072OAK bam alignments ENCSR172XOZ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AME, ENCFF018NEO 692653159 ENCODE Processing Pipeline 97499107591dc210ec1e08a9a5611d3e https://www.encodeproject.org/files/ENCFF072OAK/@@download/ENCFF072OAK.bam mm10 released low read length, control low read depth, low read depth ENCFF364MZK bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF589QAZ 1562288722 ENCODE Processing Pipeline 6d8dd397c1387af9bbccfd3ee557db6b https://www.encodeproject.org/files/ENCFF364MZK/@@download/ENCFF364MZK.bam mm10 released inconsistent platforms ENCFF183GET bam alignments ENCSR522LXN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF341CBP 1387744180 ENCODE Processing Pipeline 7dd0fd23eb1402ae6fdf25a66087e9c0 https://www.encodeproject.org/files/ENCFF183GET/@@download/ENCFF183GET.bam mm10 released inconsistent platforms ENCFF167HPL bam alignments ENCSR000AHN ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K79me2-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IAB, ENCFF018NEO 672025914 ENCODE Processing Pipeline 95eef1dec1b547f11c5e05d16c56700f https://www.encodeproject.org/files/ENCFF167HPL/@@download/ENCFF167HPL.bam mm10 released insufficient read depth, control insufficient read depth ENCFF667KDK bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 390827538 ENCODE Processing Pipeline 46a09226371fc8b456d154ca69e3ff3d https://www.encodeproject.org/files/ENCFF667KDK/@@download/ENCFF667KDK.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF661ZQB bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 662499534 ENCODE Processing Pipeline aef33f2133a7a32cc9c4534f001e2dd8 https://www.encodeproject.org/files/ENCFF661ZQB/@@download/ENCFF661ZQB.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF365DAW bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUB, ENCFF018NEO 825050206 ENCODE Processing Pipeline ae03b83f8e3d9292b9d81333dba9772f https://www.encodeproject.org/files/ENCFF365DAW/@@download/ENCFF365DAW.bam mm10 released low read length, control low read depth, low read depth ENCFF988CHY bam alignments ENCSR014TEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUC, ENCFF018NEO 964292646 ENCODE Processing Pipeline 5440a84974f0ba3e049603323e6c0b8e https://www.encodeproject.org/files/ENCFF988CHY/@@download/ENCFF988CHY.bam mm10 released low read length, control low read depth, low read depth ENCFF867FMD bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF915VAQ 675752451 ENCODE Processing Pipeline d8014cffaedaa0836ac4db9cf328a4d8 https://www.encodeproject.org/files/ENCFF867FMD/@@download/ENCFF867FMD.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF787CJO bam alignments ENCSR718CAJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF050BAT 1186785083 ENCODE Processing Pipeline e8a2c9d65942af4a48caa10bead50c2b https://www.encodeproject.org/files/ENCFF787CJO/@@download/ENCFF787CJO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF784ZAX bam alignments ENCSR000ADH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus rabbit-IgG-control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001MYM, ENCFF018NEO 1133923475 ENCODE Processing Pipeline edef23b1dafc78af7f2444378ef46806 https://www.encodeproject.org/files/ENCFF784ZAX/@@download/ENCFF784ZAX.bam mm10 released low read length ENCFF073CPJ bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVL, ENCFF002BVM, ENCFF018NEO, ENCFF850QNW 1182922240 ENCODE Processing Pipeline 3f8f4d9661792a961105f198923fc178 https://www.encodeproject.org/files/ENCFF073CPJ/@@download/ENCFF073CPJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF362ZXG bam alignments ENCSR445UYH ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVI, ENCFF002BVK, ENCFF018NEO, ENCFF887LKO 1063344647 ENCODE Processing Pipeline ad5ca69024e8ba239c20e6e2e470fe74 https://www.encodeproject.org/files/ENCFF362ZXG/@@download/ENCFF362ZXG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF203FLD bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMQ, ENCFF018NEO 910553827 ENCODE Processing Pipeline 6d947fc117a324e06fb09dbfecd38924 https://www.encodeproject.org/files/ENCFF203FLD/@@download/ENCFF203FLD.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF657XFB bam alignments ENCSR185JBL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMK, ENCFF018NEO 826346480 ENCODE Processing Pipeline 262f573d7cf06b421d222d2fc44b1cf0 https://www.encodeproject.org/files/ENCFF657XFB/@@download/ENCFF657XFB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF242VMG bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVB, ENCFF002BVC, ENCFF018NEO, ENCFF743GVV 1212448287 ENCODE Processing Pipeline 4269ef77c052c733ac110974a4b4b9f8 https://www.encodeproject.org/files/ENCFF242VMG/@@download/ENCFF242VMG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF811ANE bam alignments ENCSR175QZX ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVE, ENCFF002BVG, ENCFF018NEO, ENCFF139LJC 1167643829 ENCODE Processing Pipeline 9e2f943d47fa37f42f93bd910a26bfa0 https://www.encodeproject.org/files/ENCFF811ANE/@@download/ENCFF811ANE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF716FUA bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MYR, ENCFF018NEO 543868127 ENCODE Processing Pipeline 9e7a71617ce79ddd16a1023eb966e7d0 https://www.encodeproject.org/files/ENCFF716FUA/@@download/ENCFF716FUA.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF614DCB bam alignments ENCSR000ADY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MYO, ENCFF018NEO 872320846 ENCODE Processing Pipeline 2ca92694ea0e3c09009e8586d7ded0a1 https://www.encodeproject.org/files/ENCFF614DCB/@@download/ENCFF614DCB.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF801CNP bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 ENCFF018NEO, ENCFF514LBY 2138335446 ENCODE Processing Pipeline eabb95671cd22e00c3121f3149e322ad https://www.encodeproject.org/files/ENCFF801CNP/@@download/ENCFF801CNP.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF123XKF bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 ENCFF018NEO, ENCFF954VRX 2155052268 ENCODE Processing Pipeline 3a60cd4b04e47acf15caa22bf1f9e77d https://www.encodeproject.org/files/ENCFF123XKF/@@download/ENCFF123XKF.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF615JIE bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF518ULJ, ENCFF954VRX 2556100616 ENCODE Processing Pipeline 7a6584eb7ed56054de7a2393c2e759e6 https://www.encodeproject.org/files/ENCFF615JIE/@@download/ENCFF615JIE.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF164ZUK bam alignments ENCSR685UUM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF300USB, ENCFF514LBY 2517156365 ENCODE Processing Pipeline 4c3bc83088477727fb68757fde6f6c8d https://www.encodeproject.org/files/ENCFF164ZUK/@@download/ENCFF164ZUK.bam mm10 released inconsistent platforms out of date analysis, insufficient read depth for broad peaks control, sequencing runs labeled as technical replicates ENCFF854LJH bam alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF317THG, ENCFF429ISC, ENCFF788RXF 2079251232 ENCODE Processing Pipeline 622ac9266106bfda64ed7ed1bad01418 https://www.encodeproject.org/files/ENCFF854LJH/@@download/ENCFF854LJH.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF018UFV bam alignments ENCSR735VEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF107RHP, ENCFF163DJE, ENCFF445IOU 2062487343 ENCODE Processing Pipeline 5803dcf7c42c74e355bb3223cfa26af1 https://www.encodeproject.org/files/ENCFF018UFV/@@download/ENCFF018UFV.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF788RAA bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 503106824 ENCODE Processing Pipeline 9aba8664ae071273f4cb4f7f4b771c94 https://www.encodeproject.org/files/ENCFF788RAA/@@download/ENCFF788RAA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF084ZDT bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 590045056 ENCODE Processing Pipeline 12775a58f71c6b87ae9048364d93d03a https://www.encodeproject.org/files/ENCFF084ZDT/@@download/ENCFF084ZDT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF785CHB bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBD, ENCFF018NEO 761835723 ENCODE Processing Pipeline 283ecf8cdc60f1d6067bc639a4e481e3 https://www.encodeproject.org/files/ENCFF785CHB/@@download/ENCFF785CHB.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF848HZK bam alignments ENCSR000ADW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K27me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBG, ENCFF018NEO 760821661 ENCODE Processing Pipeline 07641b74ed9ce11330eb0149b5f2c25c https://www.encodeproject.org/files/ENCFF848HZK/@@download/ENCFF848HZK.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF616NLO bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 523847669 ENCODE Processing Pipeline 0d24fd5a9f513c7d8b136e94e568710a https://www.encodeproject.org/files/ENCFF616NLO/@@download/ENCFF616NLO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF752ONZ bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 225050731 ENCODE Processing Pipeline 0d055c08c8bffff597817541925cf0a6 https://www.encodeproject.org/files/ENCFF752ONZ/@@download/ENCFF752ONZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF810IHX bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOP, ENCFF018NEO 578158365 ENCODE Processing Pipeline 4b261830a5a2bfcadc94773d2867087d https://www.encodeproject.org/files/ENCFF810IHX/@@download/ENCFF810IHX.bam mm10 released low read length, low read depth ENCFF217RGM bam alignments ENCSR946RLM ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOU, ENCFF018NEO 783136963 ENCODE Processing Pipeline 3a917e8c77966dffac6d2507b6a10eb2 https://www.encodeproject.org/files/ENCFF217RGM/@@download/ENCFF217RGM.bam mm10 released low read length, low read depth ENCFF226BOO bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001MXK, ENCFF018NEO 835466111 ENCODE Processing Pipeline 22572120e64acb895e03084e52ff9ee5 https://www.encodeproject.org/files/ENCFF226BOO/@@download/ENCFF226BOO.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF955EHC bam alignments ENCSR000ADK ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001MXM, ENCFF018NEO 1038772884 ENCODE Processing Pipeline 7d3339ec85f396aa2e42c841915fb1ce https://www.encodeproject.org/files/ENCFF955EHC/@@download/ENCFF955EHC.bam mm10 released low read length biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF074LDJ bam alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NNP, ENCFF018NEO 547688744 ENCODE Processing Pipeline d479a97cc9bd5fff732a1a6f79c853df https://www.encodeproject.org/files/ENCFF074LDJ/@@download/ENCFF074LDJ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF966YUS bam alignments ENCSR000ADJ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NNN, ENCFF018NEO 756319187 ENCODE Processing Pipeline 07e77a62fa09a9c6b0f83581d0fd02ec https://www.encodeproject.org/files/ENCFF966YUS/@@download/ENCFF966YUS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF790CKS bam alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF056XWI, ENCFF542IKP, ENCFF653IHD 1712384147 ENCODE Processing Pipeline e3661af50ed62611efb835fcdbbf33c4 https://www.encodeproject.org/files/ENCFF790CKS/@@download/ENCFF790CKS.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF597TOC bam alignments ENCSR285IQN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF551ENZ, ENCFF556MTV 1887653487 ENCODE Processing Pipeline 00f4ab54c542fad8a325d0963d2d293a https://www.encodeproject.org/files/ENCFF597TOC/@@download/ENCFF597TOC.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF763JDV bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF044SMI, ENCFF664UMG 1094487034 ENCODE Processing Pipeline fb656757cf2bb48fe635c67f31bdb5f4 https://www.encodeproject.org/files/ENCFF763JDV/@@download/ENCFF763JDV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF308XTN bam alignments ENCSR571WQI ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF048NRC, ENCFF429UIY, ENCFF518EIZ, ENCFF572IRL 617533100 ENCODE Processing Pipeline 1acdf7ef28a9b4db3129cf9f55658077 https://www.encodeproject.org/files/ENCFF308XTN/@@download/ENCFF308XTN.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity, control insufficient read depth ENCFF271SRD bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 604624795 ENCODE Processing Pipeline 8354f6ab2ca30740b13479953b9a2151 https://www.encodeproject.org/files/ENCFF271SRD/@@download/ENCFF271SRD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF006JXP bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 667604428 ENCODE Processing Pipeline 3698b803fc362be8ebd058fdee8c483f https://www.encodeproject.org/files/ENCFF006JXP/@@download/ENCFF006JXP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF926ANX bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF079GEV, ENCFF935ZTL 3350640055 ENCODE Processing Pipeline 57098f6faf96120e82701a4ed6dc4349 https://www.encodeproject.org/files/ENCFF926ANX/@@download/ENCFF926ANX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF460TKS bam alignments ENCSR564XSR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF096XZW, ENCFF175KSI 2932821747 ENCODE Processing Pipeline 6f1077fe20ad02171a6bb26e12c1d4d4 https://www.encodeproject.org/files/ENCFF460TKS/@@download/ENCFF460TKS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF252LJW bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWS, ENCFF018NEO 396647064 ENCODE Processing Pipeline 3c9cf4e63406b58f422eab9b542a439c https://www.encodeproject.org/files/ENCFF252LJW/@@download/ENCFF252LJW.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF299KHI bam alignments ENCSR000CEZ ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWT, ENCFF018NEO 396196393 ENCODE Processing Pipeline ee9e49b131c1647e8befea681070827a https://www.encodeproject.org/files/ENCFF299KHI/@@download/ENCFF299KHI.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF731QVA bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMC, ENCFF018NEO 681695630 ENCODE Processing Pipeline c6d2cac8d590e79f400ff187dd8c64af https://www.encodeproject.org/files/ENCFF731QVA/@@download/ENCFF731QVA.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF033ZXN bam alignments ENCSR288LNF ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMA, ENCFF018NEO 968600487 ENCODE Processing Pipeline 0edaa9ed78a3d1a62a1fe932b0eb34af https://www.encodeproject.org/files/ENCFF033ZXN/@@download/ENCFF033ZXN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF206DXM bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANG, ENCFF018NEO 554947264 ENCODE Processing Pipeline 5d5356f14cd0ed7e9a98d9e80f10b06b https://www.encodeproject.org/files/ENCFF206DXM/@@download/ENCFF206DXM.bam mm10 released low read length, low read depth ENCFF428OFW bam alignments ENCSR262CSU ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANM, ENCFF018NEO 658822902 ENCODE Processing Pipeline 98eae4e93e0a0153d86845d317be0b69 https://www.encodeproject.org/files/ENCFF428OFW/@@download/ENCFF428OFW.bam mm10 released low read length, low read depth ENCFF031MFD bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF241WGQ, ENCFF363PBS 2891238208 ENCODE Processing Pipeline 7d31fc16cc728c4e263a380fe3172309 https://www.encodeproject.org/files/ENCFF031MFD/@@download/ENCFF031MFD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF869LGO bam alignments ENCSR570HJI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF046IFA, ENCFF285DAO, ENCFF472UJC 2780957487 ENCODE Processing Pipeline b82ebe26fa2fd3dda8836fee069a3d76 https://www.encodeproject.org/files/ENCFF869LGO/@@download/ENCFF869LGO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF212NWB bam alignments ENCSR270KSY ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF150DJK 1582138256 ENCODE Processing Pipeline 312a09db5cc8f0cf96101b4aa9dc525e https://www.encodeproject.org/files/ENCFF212NWB/@@download/ENCFF212NWB.bam mm10 released experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF009GQO bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF089POY, ENCFF980EMT 2795404015 ENCODE Processing Pipeline 8bf2c199bac075f507d14463d1a5e780 https://www.encodeproject.org/files/ENCFF009GQO/@@download/ENCFF009GQO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF655YMO bam alignments ENCSR548BKP ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF338BRH 2939955849 ENCODE Processing Pipeline cc87603710487cc8e658361e1930bdc2 https://www.encodeproject.org/files/ENCFF655YMO/@@download/ENCFF655YMO.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF049TYL bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 654147597 ENCODE Processing Pipeline eccd2ee851894adc26cda5975b3f2f39 https://www.encodeproject.org/files/ENCFF049TYL/@@download/ENCFF049TYL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF869RHU bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 522033050 ENCODE Processing Pipeline 4b3c60033a201b96a3d22898cfc652f1 https://www.encodeproject.org/files/ENCFF869RHU/@@download/ENCFF869RHU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF356RDU bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF018NEO, ENCFF367VXW 1153825621 ENCODE Processing Pipeline ac8f65bbab6c86090fd0ee7d1ff4737c https://www.encodeproject.org/files/ENCFF356RDU/@@download/ENCFF356RDU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF777WBC bam alignments ENCSR701GKO ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTJ, ENCFF018NEO, ENCFF946PVW 1020681941 ENCODE Processing Pipeline 4a0450b626099567efdffbb20ca714b9 https://www.encodeproject.org/files/ENCFF777WBC/@@download/ENCFF777WBC.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF480HRJ bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KTB, ENCFF018NEO 566900553 ENCODE Processing Pipeline c3c69cf6b5285a7ea928c3e7cc9a980b https://www.encodeproject.org/files/ENCFF480HRJ/@@download/ENCFF480HRJ.bam mm10 released low read length, control low read depth, low read depth ENCFF617JZE bam alignments ENCSR000CDO ChIP-seq UBERON:0001987 placenta tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KTA, ENCFF018NEO 455204732 ENCODE Processing Pipeline 94b0b17844503534f35f5c74734717d4 https://www.encodeproject.org/files/ENCFF617JZE/@@download/ENCFF617JZE.bam mm10 released low read length, control low read depth, low read depth ENCFF812SUN bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGF, ENCFF018NEO 1099597864 ENCODE Processing Pipeline fb0b5066fcb2f8b56ef83467d8acc426 https://www.encodeproject.org/files/ENCFF812SUN/@@download/ENCFF812SUN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF539SEX bam alignments ENCSR261OAK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGY, ENCFF018NEO 859245865 ENCODE Processing Pipeline ba2eea9cf98d5b7dd97e89a89624e318 https://www.encodeproject.org/files/ENCFF539SEX/@@download/ENCFF539SEX.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF956WIY bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF981EXV 1584487596 ENCODE Processing Pipeline b532b4d82d57e7e9baef992e2b8a8d0f https://www.encodeproject.org/files/ENCFF956WIY/@@download/ENCFF956WIY.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF102PWG bam alignments ENCSR044SNE ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF148FLG 1790256521 ENCODE Processing Pipeline ee355cc54165ab51308fb4ebfb6b1615 https://www.encodeproject.org/files/ENCFF102PWG/@@download/ENCFF102PWG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF480JRT bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWH, ENCFF018NEO 345870099 ENCODE Processing Pipeline 45beb3c04b2d13ec3d2d4d50db5931f4 https://www.encodeproject.org/files/ENCFF480JRT/@@download/ENCFF480JRT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF593PYF bam alignments ENCSR000CFB ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWJ, ENCFF018NEO 403551358 ENCODE Processing Pipeline cca9778b3cb9f6e5aaaaccbde210477c https://www.encodeproject.org/files/ENCFF593PYF/@@download/ENCFF593PYF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth ENCFF323VNH bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIH, ENCFF018NEO, ENCFF325MBO 1072946584 ENCODE Processing Pipeline de5811151b0e3b68465d91f15cd8098a https://www.encodeproject.org/files/ENCFF323VNH/@@download/ENCFF323VNH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF956RMP bam alignments ENCSR581FAT ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIP, ENCFF018NEO, ENCFF445FEB 958260885 ENCODE Processing Pipeline 02c60bbe3bc83cfed618fe8a01b70836 https://www.encodeproject.org/files/ENCFF956RMP/@@download/ENCFF956RMP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF153JVH bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSW, ENCFF018NEO 689554942 ENCODE Processing Pipeline cc203ce178d731d75e384e020378f174 https://www.encodeproject.org/files/ENCFF153JVH/@@download/ENCFF153JVH.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF413ARE bam alignments ENCSR323NOC ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTN, ENCFF018NEO 617759062 ENCODE Processing Pipeline 33f151d59fe85ecf2ac48cc9dbc9d4bb https://www.encodeproject.org/files/ENCFF413ARE/@@download/ENCFF413ARE.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF120ZIL bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANO, ENCFF018NEO 542520568 ENCODE Processing Pipeline 7f360818d06d8a831e5a99c59ede70c2 https://www.encodeproject.org/files/ENCFF120ZIL/@@download/ENCFF120ZIL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF191GQW bam alignments ENCSR427ZJU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANP, ENCFF018NEO 1455675238 ENCODE Processing Pipeline 00fe54406bee27b4d7bf54ca1c02afd7 https://www.encodeproject.org/files/ENCFF191GQW/@@download/ENCFF191GQW.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF295BOL bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF671WMT 2771538696 ENCODE Processing Pipeline 34e6798f93171d2dd8daedcf0cc0b99f https://www.encodeproject.org/files/ENCFF295BOL/@@download/ENCFF295BOL.bam mm10 released inconsistent platforms ENCFF173RDF bam alignments ENCSR810EOA ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF978XUJ 3026962945 ENCODE Processing Pipeline 049365f8528c5d185dcf7b06d20bcc6d https://www.encodeproject.org/files/ENCFF173RDF/@@download/ENCFF173RDF.bam mm10 released inconsistent platforms ENCFF665NIE bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRM, ENCFF018NEO, ENCFF329DBE 1034824510 ENCODE Processing Pipeline 60d48849ffe35bca96678c4fd45cf533 https://www.encodeproject.org/files/ENCFF665NIE/@@download/ENCFF665NIE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF791LRE bam alignments ENCSR511WPK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRR, ENCFF018NEO 1084334832 ENCODE Processing Pipeline e62242c7d2fb56c654b82a04423fa0bc https://www.encodeproject.org/files/ENCFF791LRE/@@download/ENCFF791LRE.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF643WRW bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 567582897 ENCODE Processing Pipeline c413884bf99de47fdaa5d87fbb87d335 https://www.encodeproject.org/files/ENCFF643WRW/@@download/ENCFF643WRW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF658OJL bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 840000890 ENCODE Processing Pipeline 81b0d93f4d1a9eccb15e48ded261b63e https://www.encodeproject.org/files/ENCFF658OJL/@@download/ENCFF658OJL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF460RJA bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF786CEQ 1720373978 ENCODE Processing Pipeline fc4ab4531f8a67798ec2233bf4c7fa1f https://www.encodeproject.org/files/ENCFF460RJA/@@download/ENCFF460RJA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF363DNM bam alignments ENCSR057BKH ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF731WKM 1706601538 ENCODE Processing Pipeline 0458710ef228710fc3a650ddb79bbecf https://www.encodeproject.org/files/ENCFF363DNM/@@download/ENCFF363DNM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF128MHU bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOR, ENCFF018NEO 579838109 ENCODE Processing Pipeline e36531bfb48dd5c5cc757ae5edf41e40 https://www.encodeproject.org/files/ENCFF128MHU/@@download/ENCFF128MHU.bam mm10 released mixed read lengths, low read length, low read depth ENCFF795AOE bam alignments ENCSR519DNE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOT, ENCFF018NEO 793262196 ENCODE Processing Pipeline bbbb973a67359218badce4415194ecbb https://www.encodeproject.org/files/ENCFF795AOE/@@download/ENCFF795AOE.bam mm10 released mixed read lengths, low read length, low read depth ENCFF920RHB bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 382537031 ENCODE Processing Pipeline 6fb949942f1610e0fabcdd606b43b7d9 https://www.encodeproject.org/files/ENCFF920RHB/@@download/ENCFF920RHB.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF440GRL bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 531488649 ENCODE Processing Pipeline 85c27eb8bb732b45034cc2635b40c9e6 https://www.encodeproject.org/files/ENCFF440GRL/@@download/ENCFF440GRL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF876QJH bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF246LOG, ENCFF298XQU 2772426435 ENCODE Processing Pipeline 40f07dd1d9bf1bbc540e3a82dfc64f0e https://www.encodeproject.org/files/ENCFF876QJH/@@download/ENCFF876QJH.bam mm10 released sequencing runs labeled as technical replicates ENCFF200JPL bam alignments ENCSR465WTL ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF262OPL, ENCFF515ALU 2527097035 ENCODE Processing Pipeline 3ac9fcaf004e6f3461725e22d8c8d579 https://www.encodeproject.org/files/ENCFF200JPL/@@download/ENCFF200JPL.bam mm10 released sequencing runs labeled as technical replicates ENCFF720GQP bam alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF242YWQ 1511582448 ENCODE Processing Pipeline bb6471ad3dcda361a95154b95826d531 https://www.encodeproject.org/files/ENCFF720GQP/@@download/ENCFF720GQP.bam mm10 released mild to moderate bottlenecking ENCFF024MPT bam alignments ENCSR863VHE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF294RAD 1333951908 ENCODE Processing Pipeline 0abd5bcaccf91027c127e077f86e94ea https://www.encodeproject.org/files/ENCFF024MPT/@@download/ENCFF024MPT.bam mm10 released mild to moderate bottlenecking ENCFF641XAS bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 620174059 ENCODE Processing Pipeline 76a47e3e25f269888d33f03a9c9bff1a https://www.encodeproject.org/files/ENCFF641XAS/@@download/ENCFF641XAS.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF847DDB bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 652472029 ENCODE Processing Pipeline f5f51870bab4fbc18c10bf65978d95b1 https://www.encodeproject.org/files/ENCFF847DDB/@@download/ENCFF847DDB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF431CSN bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWQ, ENCFF018NEO 1074049225 ENCODE Processing Pipeline 200fbdaf760afe88d576d901b97a4925 https://www.encodeproject.org/files/ENCFF431CSN/@@download/ENCFF431CSN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF149TQU bam alignments ENCSR140UEX ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWM, ENCFF018NEO 953654965 ENCODE Processing Pipeline 237196328e23760d81d76e650a5d9646 https://www.encodeproject.org/files/ENCFF149TQU/@@download/ENCFF149TQU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF634NAV bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF441BJJ, ENCFF824WNR 3981334614 ENCODE Processing Pipeline 7ddb47b07bf0beca483b22b504878ce3 https://www.encodeproject.org/files/ENCFF634NAV/@@download/ENCFF634NAV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF209HPI bam alignments ENCSR274AQL ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF636CUM, ENCFF905TFJ 2613993051 ENCODE Processing Pipeline d75f6d9cb454c71ca6bd5b95e169796f https://www.encodeproject.org/files/ENCFF209HPI/@@download/ENCFF209HPI.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF715CTH bam alignments ENCSR275BEG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF756GQQ 1158383561 ENCODE Processing Pipeline 07ac0b6e49ce6998f344ba6a9859c6f4 https://www.encodeproject.org/files/ENCFF715CTH/@@download/ENCFF715CTH.bam mm10 released insufficient read depth for broad peaks control ENCFF304RDU bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF683UFM 1508543469 ENCODE Processing Pipeline 38b6452c401acf4e68229fddb0c8d4d5 https://www.encodeproject.org/files/ENCFF304RDU/@@download/ENCFF304RDU.bam mm10 released ENCFF509BWJ bam alignments ENCSR891SAW ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF693ZRB 1609477763 ENCODE Processing Pipeline 72f5e5deb914baf6d2edc816c1389c95 https://www.encodeproject.org/files/ENCFF509BWJ/@@download/ENCFF509BWJ.bam mm10 released ENCFF377MNZ bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALF, ENCFF018NEO 1078193650 ENCODE Processing Pipeline 3235f992dcd7d8853577c5d042f9a4e3 https://www.encodeproject.org/files/ENCFF377MNZ/@@download/ENCFF377MNZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF582XLM bam alignments ENCSR344BPJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALH, ENCFF018NEO 1491242927 ENCODE Processing Pipeline b3db44c2eada19a0134a6a8a422f9dda https://www.encodeproject.org/files/ENCFF582XLM/@@download/ENCFF582XLM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF204RVT bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF033ZXY, ENCFF159DAK 1079136664 ENCODE Processing Pipeline feb5c7b8ea8f147d48cc405a54e2ed7e https://www.encodeproject.org/files/ENCFF204RVT/@@download/ENCFF204RVT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF403OKB bam alignments ENCSR668BBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF215NAV 1235007839 ENCODE Processing Pipeline 85e94ffadde33d504698f12a943fee4e https://www.encodeproject.org/files/ENCFF403OKB/@@download/ENCFF403OKB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF420MVF bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF615FEE, ENCFF702VPD 2048551092 ENCODE Processing Pipeline eaab4a0c528f58c27e74f1652ff0ec62 https://www.encodeproject.org/files/ENCFF420MVF/@@download/ENCFF420MVF.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF173TAZ bam alignments ENCSR582IBX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF678UYY, ENCFF904XXR 2017170559 ENCODE Processing Pipeline feba9e68f1464da86c464e0747de4d81 https://www.encodeproject.org/files/ENCFF173TAZ/@@download/ENCFF173TAZ.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF482CQL bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVH, ENCFF018NEO 768348692 ENCODE Processing Pipeline d19ea20bbc7e40e85923073e9ec86852 https://www.encodeproject.org/files/ENCFF482CQL/@@download/ENCFF482CQL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF539RTU bam alignments ENCSR000CGA ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVG, ENCFF018NEO 598160029 ENCODE Processing Pipeline e4b20d157051f0cf7aa9127c68f60600 https://www.encodeproject.org/files/ENCFF539RTU/@@download/ENCFF539RTU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF600JWW bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF872IKK 2048182917 ENCODE Processing Pipeline ec4a0312164425e712e0eea1f41c7698 https://www.encodeproject.org/files/ENCFF600JWW/@@download/ENCFF600JWW.bam mm10 released ENCFF740UXX bam alignments ENCSR645ETR ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF390EUA 2505717601 ENCODE Processing Pipeline b30aba7caf8481ee109e5cca64d76c38 https://www.encodeproject.org/files/ENCFF740UXX/@@download/ENCFF740UXX.bam mm10 released ENCFF089UFL bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MOR, ENCFF018NEO 572045016 ENCODE Processing Pipeline a338da54c9c8b2798ddce2a3f502e20d https://www.encodeproject.org/files/ENCFF089UFL/@@download/ENCFF089UFL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF984QUA bam alignments ENCSR000DJA ChIP-seq EFO:0002034 G1E stem cell Mus musculus Control-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MPG, ENCFF018NEO 4424898092 ENCODE Processing Pipeline 5b45eca8de4e6302e8e599271e630f45 https://www.encodeproject.org/files/ENCFF984QUA/@@download/ENCFF984QUA.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF946FSF bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJR, ENCFF018NEO 1413838246 ENCODE Processing Pipeline 00eef33b439326fc0c0d81c07c9fc408 https://www.encodeproject.org/files/ENCFF946FSF/@@download/ENCFF946FSF.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF851KQD bam alignments ENCSR529ERN ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF897XJF 1420809992 ENCODE Processing Pipeline 93f719899f0616a4e9611d9bb49b4d88 https://www.encodeproject.org/files/ENCFF851KQD/@@download/ENCFF851KQD.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth, control insufficient read depth ENCFF869IME bam alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF982BEQ 2323237661 ENCODE Processing Pipeline cee6e51c17508f35ffe4cf11d809a78f https://www.encodeproject.org/files/ENCFF869IME/@@download/ENCFF869IME.bam mm10 released ENCFF940GMW bam alignments ENCSR682UEM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF024PVD 2517619102 ENCODE Processing Pipeline 183905534fe3b69b2d32715168a9d5bc https://www.encodeproject.org/files/ENCFF940GMW/@@download/ENCFF940GMW.bam mm10 released ENCFF434BNI bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF883OFN 2146686788 ENCODE Processing Pipeline 686051cd12db844b2eac1485ba603d30 https://www.encodeproject.org/files/ENCFF434BNI/@@download/ENCFF434BNI.bam mm10 released ENCFF827BYE bam alignments ENCSR751AAB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF828JAB 2295074699 ENCODE Processing Pipeline 9780b451c4b5a58108baf659d7404c45 https://www.encodeproject.org/files/ENCFF827BYE/@@download/ENCFF827BYE.bam mm10 released ENCFF553IOV bam alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF391YEY 1105861959 ENCODE Processing Pipeline 8badffd2d403bca11a21e067d4fdf87e https://www.encodeproject.org/files/ENCFF553IOV/@@download/ENCFF553IOV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF512HMV bam alignments ENCSR318QFY ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF865IVF 1157694759 ENCODE Processing Pipeline 7ee61e8dcf9764fddf5c80a8f2334f91 https://www.encodeproject.org/files/ENCFF512HMV/@@download/ENCFF512HMV.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF833PQS bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSB, ENCFF018NEO, ENCFF660OMY 1138509439 ENCODE Processing Pipeline 101eeb5a4ec5f5a64317aaa8ea0028df https://www.encodeproject.org/files/ENCFF833PQS/@@download/ENCFF833PQS.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF785NAQ bam alignments ENCSR419MSI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSA, ENCFF018NEO, ENCFF343VVQ 1088841155 ENCODE Processing Pipeline 9671d745212b4998d0f2245fabd0980d https://www.encodeproject.org/files/ENCFF785NAQ/@@download/ENCFF785NAQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF067LVV bam alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF155KRU 1665540118 ENCODE Processing Pipeline b403190cd72da6d457930620863a96c3 https://www.encodeproject.org/files/ENCFF067LVV/@@download/ENCFF067LVV.bam mm10 released mild to moderate bottlenecking ENCFF859YQX bam alignments ENCSR989LUY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF249TZR 2479329858 ENCODE Processing Pipeline 64eead1bfad14c518827b6623afc5aa7 https://www.encodeproject.org/files/ENCFF859YQX/@@download/ENCFF859YQX.bam mm10 released mild to moderate bottlenecking ENCFF748DPU bam alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF403SQM 980661108 ENCODE Processing Pipeline 6c52bb58efc891045537b72055b447f4 https://www.encodeproject.org/files/ENCFF748DPU/@@download/ENCFF748DPU.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF163RNG bam alignments ENCSR368RJD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF898EWU 2004638578 ENCODE Processing Pipeline a3f2f7f1dd0ffc89cec26f295d33443e https://www.encodeproject.org/files/ENCFF163RNG/@@download/ENCFF163RNG.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF287MUT bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKY, ENCFF018NEO 1028917302 ENCODE Processing Pipeline a8cf8d2bbeac13e178885cb4df70c408 https://www.encodeproject.org/files/ENCFF287MUT/@@download/ENCFF287MUT.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF556XTP bam alignments ENCSR755SGK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKZ, ENCFF018NEO 911324041 ENCODE Processing Pipeline 51f7bfc70d4e0aa5b1144e3a52f6dc54 https://www.encodeproject.org/files/ENCFF556XTP/@@download/ENCFF556XTP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF836XNP bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF547JPC 1245538569 ENCODE Processing Pipeline 0e29a82d3a17744d3fe09e62549cc976 https://www.encodeproject.org/files/ENCFF836XNP/@@download/ENCFF836XNP.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF587YQL bam alignments ENCSR707DZS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF832PDF 1141092708 ENCODE Processing Pipeline 70bbeb66b6a5f980723e77dcebb550c5 https://www.encodeproject.org/files/ENCFF587YQL/@@download/ENCFF587YQL.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF298TEL bam alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF942UQV 2223299049 ENCODE Processing Pipeline 4955a9e3c1155b1e702c892c6805bfb4 https://www.encodeproject.org/files/ENCFF298TEL/@@download/ENCFF298TEL.bam mm10 released ENCFF528BOJ bam alignments ENCSR842LMA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF914QXH 2343765635 ENCODE Processing Pipeline 56103fb96e76ef54254cdc8292475d8b https://www.encodeproject.org/files/ENCFF528BOJ/@@download/ENCFF528BOJ.bam mm10 released ENCFF392EKM bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFZ, ENCFF018NEO 888755234 ENCODE Processing Pipeline 03ac2b40b788bedb997e2e9f05842b72 https://www.encodeproject.org/files/ENCFF392EKM/@@download/ENCFF392EKM.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF159MVW bam alignments ENCSR831YAX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFY, ENCFF018NEO, ENCFF178TMT 1190846244 ENCODE Processing Pipeline aebd13a0c5fbcddb836c789dc8bf7483 https://www.encodeproject.org/files/ENCFF159MVW/@@download/ENCFF159MVW.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF224DTN bam alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF825WXN 1023831758 ENCODE Processing Pipeline a8daeceea784a0be6f34187e23921d5f https://www.encodeproject.org/files/ENCFF224DTN/@@download/ENCFF224DTN.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF200DJC bam alignments ENCSR581EJK ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF255IGL 1936561898 ENCODE Processing Pipeline c199b253606a7bfe238348a470fea983 https://www.encodeproject.org/files/ENCFF200DJC/@@download/ENCFF200DJC.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF373VVE bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MCY, ENCFF018NEO 2595913303 ENCODE Processing Pipeline 7524e4c9dc1c0a25d52f5f1cd3a1c02d https://www.encodeproject.org/files/ENCFF373VVE/@@download/ENCFF373VVE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF782LLP bam alignments ENCSR000DHS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MCZ, ENCFF018NEO 2890268109 ENCODE Processing Pipeline b6e8f26fb8b753a5c12b2db1e6684820 https://www.encodeproject.org/files/ENCFF782LLP/@@download/ENCFF782LLP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF539LFN bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRZ, ENCFF018NEO, ENCFF822LXA 1216017076 ENCODE Processing Pipeline 6b15b691f19a678976a4bc7cd212dbc6 https://www.encodeproject.org/files/ENCFF539LFN/@@download/ENCFF539LFN.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF118NNH bam alignments ENCSR548BCO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRY, ENCFF018NEO, ENCFF115DQJ 1252699452 ENCODE Processing Pipeline cb43995558f4459a23f8ea895c709b3b https://www.encodeproject.org/files/ENCFF118NNH/@@download/ENCFF118NNH.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF595QRX bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF018NEO, ENCFF717EAN 315121460 ENCODE Processing Pipeline a395c9bc601178db3a7d97fde96cda71 https://www.encodeproject.org/files/ENCFF595QRX/@@download/ENCFF595QRX.bam mm10 released low read length NTR biosample insufficient read depth ENCFF498QAY bam alignments ENCSR000CGF ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus Control-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXL, ENCFF018NEO 338120829 ENCODE Processing Pipeline 53b24a04a187389184be0478226480a1 https://www.encodeproject.org/files/ENCFF498QAY/@@download/ENCFF498QAY.bam mm10 released low read length NTR biosample insufficient read depth ENCFF094SMC bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRW, ENCFF018NEO 1046239591 ENCODE Processing Pipeline 1341fb6a759db626c82286574187bea6 https://www.encodeproject.org/files/ENCFF094SMC/@@download/ENCFF094SMC.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF717NOZ bam alignments ENCSR886IHN ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRX, ENCFF018NEO 1115030072 ENCODE Processing Pipeline 9bb98d783ec323f6a850b274029174b5 https://www.encodeproject.org/files/ENCFF717NOZ/@@download/ENCFF717NOZ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF736TSN bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF181ZNR, ENCFF361FYH 1968816616 ENCODE Processing Pipeline 60fbed8f1008e3de26bef9316adb492d https://www.encodeproject.org/files/ENCFF736TSN/@@download/ENCFF736TSN.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF592DSG bam alignments ENCSR345DDI ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF096KAU 2062204946 ENCODE Processing Pipeline 6db5cd52b2c2daee1706266bada86ee1 https://www.encodeproject.org/files/ENCFF592DSG/@@download/ENCFF592DSG.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF799BRW bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF497ZGY 1113808698 ENCODE Processing Pipeline 06fba415fa34d0e819294b7081c231f9 https://www.encodeproject.org/files/ENCFF799BRW/@@download/ENCFF799BRW.bam mm10 released ENCFF968WKI bam alignments ENCSR538SRO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF608EEV 1069891902 ENCODE Processing Pipeline 2fcca401fb3e4b5a428dff0751ed3003 https://www.encodeproject.org/files/ENCFF968WKI/@@download/ENCFF968WKI.bam mm10 released ENCFF789AII bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF276BKE, ENCFF585PDV, ENCFF840ENO 3052988222 ENCODE Processing Pipeline c54c0e6ffa7c1f99dd834fd29a994c0f https://www.encodeproject.org/files/ENCFF789AII/@@download/ENCFF789AII.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF287VDV bam alignments ENCSR809NWL ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF052ULD, ENCFF420TTS, ENCFF741LAZ 3414660677 ENCODE Processing Pipeline ace7ffc80fc08f7b9674fc659df02241 https://www.encodeproject.org/files/ENCFF287VDV/@@download/ENCFF287VDV.bam mm10 released inconsistent platforms, control low read depth sequencing runs labeled as technical replicates ENCFF418HGV bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANX, ENCFF018NEO 1077024168 ENCODE Processing Pipeline b5c9daf5835671a10d466ed08f8003a3 https://www.encodeproject.org/files/ENCFF418HGV/@@download/ENCFF418HGV.bam mm10 released low read length, mild to moderate bottlenecking ENCFF079VRL bam alignments ENCSR345RKE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANU, ENCFF018NEO 1158034625 ENCODE Processing Pipeline 74d3299ddcacab6bca092c3177800e2d https://www.encodeproject.org/files/ENCFF079VRL/@@download/ENCFF079VRL.bam mm10 released low read length, mild to moderate bottlenecking ENCFF746PNY bam alignments ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF535VAN 2121873502 Christina Leslie, MSKCC 8d8e6b84e9b8302e2bc7090486fa3040 https://www.encodeproject.org/files/ENCFF746PNY/@@download/ENCFF746PNY.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF379RMJ bam alignments ENCSR075MGD ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF920BEF 2164120947 Christina Leslie, MSKCC 43b84be44cef090cd6cae64d01f66888 https://www.encodeproject.org/files/ENCFF379RMJ/@@download/ENCFF379RMJ.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF259VYR bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 1 48 ENCFF001ZOT, ENCFF018NEO 1368927054 ENCODE Processing Pipeline 42aae779daa4b08737250594bfa1daac https://www.encodeproject.org/files/ENCFF259VYR/@@download/ENCFF259VYR.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF175TYK bam alignments ENCSR212KGS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2014-02-14 ENCODE 2 48 ENCFF001ZPA, ENCFF018NEO 1216807264 ENCODE Processing Pipeline c35e18835f854bc3fa24a71313bec7ba https://www.encodeproject.org/files/ENCFF175TYK/@@download/ENCFF175TYK.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO ENCFF781URQ bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRV, ENCFF018NEO 962968260 ENCODE Processing Pipeline b14fbee4ae3dd9e6c900713e15b252d1 https://www.encodeproject.org/files/ENCFF781URQ/@@download/ENCFF781URQ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF206GAZ bam alignments ENCSR695FPP ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRU, ENCFF018NEO, ENCFF418PWC 1025113753 ENCODE Processing Pipeline 9612fd0d190e5f731a7e7928298060af https://www.encodeproject.org/files/ENCFF206GAZ/@@download/ENCFF206GAZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF299UHM bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF749DSU 1151197463 ENCODE Processing Pipeline ff80414f78dffd633b02f694009b3288 https://www.encodeproject.org/files/ENCFF299UHM/@@download/ENCFF299UHM.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF349LSN bam alignments ENCSR488KVB ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF381CNM 1208571038 ENCODE Processing Pipeline a248fabcb060e621cd0f58d307190a30 https://www.encodeproject.org/files/ENCFF349LSN/@@download/ENCFF349LSN.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF018JYA bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF567IST, ENCFF650JIB 2922616112 ENCODE Processing Pipeline ecb2d5e65af404d69a542f8e60138ede https://www.encodeproject.org/files/ENCFF018JYA/@@download/ENCFF018JYA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF880XNZ bam alignments ENCSR776RJR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF121EQW, ENCFF206FJL, ENCFF382YNY 3337642075 ENCODE Processing Pipeline aeacf5652f695636a0c80b8135121484 https://www.encodeproject.org/files/ENCFF880XNZ/@@download/ENCFF880XNZ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF303IPG bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF414MGO 1597014588 ENCODE Processing Pipeline cbe75cf197a8ddd1e128bf2d1a322f8c https://www.encodeproject.org/files/ENCFF303IPG/@@download/ENCFF303IPG.bam mm10 released mild to moderate bottlenecking ENCFF240VYF bam alignments ENCSR370MSK ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF262ULV 1761313937 ENCODE Processing Pipeline c04bdb9d68042210dd14cf459d986a1f https://www.encodeproject.org/files/ENCFF240VYF/@@download/ENCFF240VYF.bam mm10 released mild to moderate bottlenecking ENCFF026ZWR bam alignments ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF576FRV 1330059044 Christina Leslie, MSKCC b169047bca7b44291545606adef88b37 https://www.encodeproject.org/files/ENCFF026ZWR/@@download/ENCFF026ZWR.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF608PYD bam alignments ENCSR118TPX ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K4me1-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF730ZFE 899731156 Christina Leslie, MSKCC 659d74760c90f4af30c18224c52c2826 https://www.encodeproject.org/files/ENCFF608PYD/@@download/ENCFF608PYD.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF216NSC bam alignments ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF047SIF 2085197561 Christina Leslie, MSKCC 460e96e14dd966b6b306a95be25b6d7e https://www.encodeproject.org/files/ENCFF216NSC/@@download/ENCFF216NSC.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF591DZZ bam alignments ENCSR791RPR ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF341KMW 1928752906 Christina Leslie, MSKCC 38abc9e55e767e392ab22a66ef149e62 https://www.encodeproject.org/files/ENCFF591DZZ/@@download/ENCFF591DZZ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF580NNY bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 238802631 ENCODE Processing Pipeline 3934281b6c25559c374873f08c087174 https://www.encodeproject.org/files/ENCFF580NNY/@@download/ENCFF580NNY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF119HGR bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 299602650 ENCODE Processing Pipeline 60b05f6f90e9cc40e7b3119af7e14f4e https://www.encodeproject.org/files/ENCFF119HGR/@@download/ENCFF119HGR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF141MBL bam alignments ENCSR896QWJ ChIP-seq CL:0000815 regulatory T cell primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF479WJA 1023406204 Christina Leslie, MSKCC 9b3869c39811f5b193356ba1ac1d850d https://www.encodeproject.org/files/ENCFF141MBL/@@download/ENCFF141MBL.bam mm10 released experiment not submitted to GEO, missing donor unreplicated experiment ENCFF777WWT bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF077DLY 903801570 ENCODE Processing Pipeline 3d4ac3efe5d43538e176018f8ef497de https://www.encodeproject.org/files/ENCFF777WWT/@@download/ENCFF777WWT.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF795RYB bam alignments ENCSR607HIQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF149TJE 1038633043 ENCODE Processing Pipeline 5954845465d0a4f07019adf9be2b3699 https://www.encodeproject.org/files/ENCFF795RYB/@@download/ENCFF795RYB.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF316FVW bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF714DNC 1915562282 ENCODE Processing Pipeline c792ee52543ce8043937647bb7f9a009 https://www.encodeproject.org/files/ENCFF316FVW/@@download/ENCFF316FVW.bam mm10 released mild to moderate bottlenecking ENCFF051RLR bam alignments ENCSR930AFR ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF223VEF 2015088077 ENCODE Processing Pipeline 42c956b2f4bf71749dfd1387282e37f4 https://www.encodeproject.org/files/ENCFF051RLR/@@download/ENCFF051RLR.bam mm10 released mild to moderate bottlenecking ENCFF489IXK bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 683706521 ENCODE Processing Pipeline ff41985420ab1869a31e5b154555ca56 https://www.encodeproject.org/files/ENCFF489IXK/@@download/ENCFF489IXK.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF629YOP bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 602674955 ENCODE Processing Pipeline 0cf452b42775ff1ef5840b8659d56602 https://www.encodeproject.org/files/ENCFF629YOP/@@download/ENCFF629YOP.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF477WQY bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF451SVW 1242006810 ENCODE Processing Pipeline 5be4e47211f8200a96c9ab8d90d3f771 https://www.encodeproject.org/files/ENCFF477WQY/@@download/ENCFF477WQY.bam mm10 released inconsistent platforms ENCFF858QZZ bam alignments ENCSR855NKG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF989ZJZ 1508491886 ENCODE Processing Pipeline 3371be0c74133b5688ae4d803dbe2603 https://www.encodeproject.org/files/ENCFF858QZZ/@@download/ENCFF858QZZ.bam mm10 released inconsistent platforms ENCFF503ZWH bam alignments ENCSR000DHB ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MPX, ENCFF018NEO 1952467096 ENCODE Processing Pipeline c0480c609445622dced72b743f6764ff https://www.encodeproject.org/files/ENCFF503ZWH/@@download/ENCFF503ZWH.bam mm10 released mild to moderate bottlenecking ENCFF868ZCZ bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 30 ENCFF001KUS, ENCFF018NEO 299039137 ENCODE Processing Pipeline c4f0ca56e98cc15f468bf5425d12e3b1 https://www.encodeproject.org/files/ENCFF868ZCZ/@@download/ENCFF868ZCZ.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF485HOH bam alignments ENCSR000CDJ ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 30 ENCFF001KUW, ENCFF018NEO 363540053 ENCODE Processing Pipeline 3f700373cdcc726f805983201b7c42aa https://www.encodeproject.org/files/ENCFF485HOH/@@download/ENCFF485HOH.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF722PAU bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 281299857 ENCODE Processing Pipeline 72ab40ad0a6bcc0d092fc292e20e8dd0 https://www.encodeproject.org/files/ENCFF722PAU/@@download/ENCFF722PAU.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF046UOO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 159001883 ENCODE Processing Pipeline 7e74c739453cd06924490c3663dc23a9 https://www.encodeproject.org/files/ENCFF046UOO/@@download/ENCFF046UOO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF194JTI bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LXR, ENCFF018NEO 2012433728 ENCODE Processing Pipeline 2aaa7795278d3c6ab1fbf9c975085a88 https://www.encodeproject.org/files/ENCFF194JTI/@@download/ENCFF194JTI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF164QTV bam alignments ENCSR000DHG ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LXT, ENCFF018NEO 2026506218 ENCODE Processing Pipeline 7458ec25893c1cbc5d3cefe00735a0fa https://www.encodeproject.org/files/ENCFF164QTV/@@download/ENCFF164QTV.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF567EVZ bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAW, ENCFF018NEO 517068780 ENCODE Processing Pipeline a2dae2653ab1a362bdb88ee156912637 https://www.encodeproject.org/files/ENCFF567EVZ/@@download/ENCFF567EVZ.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF452YQP bam alignments ENCSR000CGI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBA, ENCFF018NEO 333321375 ENCODE Processing Pipeline c73ae32b9581616aa14c964cdd17aa36 https://www.encodeproject.org/files/ENCFF452YQP/@@download/ENCFF452YQP.bam mm10 released mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF706ZAB bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAZ, ENCFF018NEO 679762682 ENCODE Processing Pipeline 2fde67064c95c0397a9c1df6618b9362 https://www.encodeproject.org/files/ENCFF706ZAB/@@download/ENCFF706ZAB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF694QDA bam alignments ENCSR000CGK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBF, ENCFF018NEO 825986081 ENCODE Processing Pipeline 34115d07b4431a87ac53d65607883729 https://www.encodeproject.org/files/ENCFF694QDA/@@download/ENCFF694QDA.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth poor library complexity ENCFF159IDS bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001YZD, ENCFF018NEO 893050944 ENCODE Processing Pipeline e24467bf40ef564ea22ffed3453f787c https://www.encodeproject.org/files/ENCFF159IDS/@@download/ENCFF159IDS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF602ZZK bam alignments ENCSR391WSS ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001YZC, ENCFF018NEO 1104473579 ENCODE Processing Pipeline e4cc93535a7cb0098e22a11baa910664 https://www.encodeproject.org/files/ENCFF602ZZK/@@download/ENCFF602ZZK.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF962EQP bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF391SYI, ENCFF951IBS 1107862764 ENCODE Processing Pipeline 7b9e14fe49987477ac7a904ca860c71d https://www.encodeproject.org/files/ENCFF962EQP/@@download/ENCFF962EQP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF854NXB bam alignments ENCSR258RGT ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF330QUX 1381681531 ENCODE Processing Pipeline f7632e7868514b3e91181c9d7688b46c https://www.encodeproject.org/files/ENCFF854NXB/@@download/ENCFF854NXB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF818EIO bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MFF, ENCFF018NEO 3037687469 ENCODE Processing Pipeline 76d26584756b1e6623611103e9570f81 https://www.encodeproject.org/files/ENCFF818EIO/@@download/ENCFF818EIO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF177JKM bam alignments ENCSR000DHI ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MFJ, ENCFF018NEO 3345440789 ENCODE Processing Pipeline 64f32f7a40ce94dfeb20144acbbb8d86 https://www.encodeproject.org/files/ENCFF177JKM/@@download/ENCFF177JKM.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF550JJH bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LMJ, ENCFF018NEO 137276616 ENCODE Processing Pipeline 8d9ba49148b5a9f9bbf0e0856e69470e https://www.encodeproject.org/files/ENCFF550JJH/@@download/ENCFF550JJH.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF884CQM bam alignments ENCSR000CEC ChIP-seq UBERON:0002101 limb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LMR, ENCFF018NEO 279244440 ENCODE Processing Pipeline 58f62f754ed950aace4605ea17809213 https://www.encodeproject.org/files/ENCFF884CQM/@@download/ENCFF884CQM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms mismatched status insufficient read depth, insufficient read length extremely low read depth ENCFF511NEV bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 1 45 ENCFF001ZIB, ENCFF018NEO 1700998085 ENCODE Processing Pipeline c6cf19811e81b42ad502b2e9c1ce433e https://www.encodeproject.org/files/ENCFF511NEV/@@download/ENCFF511NEV.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF886BUM bam alignments ENCSR059MBO ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2014-02-12 ENCODE 2 45 ENCFF001ZIH, ENCFF018NEO 1682102136 ENCODE Processing Pipeline 4d28e089dd96f250934e03b62efd0745 https://www.encodeproject.org/files/ENCFF886BUM/@@download/ENCFF886BUM.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF761GFG bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMP, ENCFF018NEO 795571429 ENCODE Processing Pipeline 4ae7e4807ab120c2cbb0a09c8620faff https://www.encodeproject.org/files/ENCFF761GFG/@@download/ENCFF761GFG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF412RVM bam alignments ENCSR433ESG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMS, ENCFF018NEO 1247018237 ENCODE Processing Pipeline 0599be8feb4fddeafa3bfcac1f06bafb https://www.encodeproject.org/files/ENCFF412RVM/@@download/ENCFF412RVM.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF171KXP bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGG, ENCFF018NEO 1219596226 ENCODE Processing Pipeline b6118e0285a55d5fa9e59589a492d00d https://www.encodeproject.org/files/ENCFF171KXP/@@download/ENCFF171KXP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF468XEU bam alignments ENCSR693UWX ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGK, ENCFF018NEO 933472055 ENCODE Processing Pipeline b1e290e819f7d2c7590bdf3799550382 https://www.encodeproject.org/files/ENCFF468XEU/@@download/ENCFF468XEU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF851TRP bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CBZ, ENCFF018NEO, ENCFF146ZPB 989351374 ENCODE Processing Pipeline 6d0c154ba069e6f1f22f9934bf058439 https://www.encodeproject.org/files/ENCFF851TRP/@@download/ENCFF851TRP.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF775YDY bam alignments ENCSR070MOK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGV, ENCFF018NEO, ENCFF456ABX 939643337 ENCODE Processing Pipeline d41f4ad57c157d10f88f0f36873eac9a https://www.encodeproject.org/files/ENCFF775YDY/@@download/ENCFF775YDY.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF967JPU bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF835UXD 2719311580 ENCODE Processing Pipeline 4aa0fa5e5e67121b133fbe21871b60b1 https://www.encodeproject.org/files/ENCFF967JPU/@@download/ENCFF967JPU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF814VHW bam alignments ENCSR837SKW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF285GCF, ENCFF567XUZ 3046922599 ENCODE Processing Pipeline a357ec1731a8e9839ce2655d6137162e https://www.encodeproject.org/files/ENCFF814VHW/@@download/ENCFF814VHW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF167BKB bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF667IFV 1274962745 ENCODE Processing Pipeline 956ea5fabc7751103436475200f57942 https://www.encodeproject.org/files/ENCFF167BKB/@@download/ENCFF167BKB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF614VDU bam alignments ENCSR462BZP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF910GMF 1716230730 ENCODE Processing Pipeline b1710812e52166bd8efdacbec38a837f https://www.encodeproject.org/files/ENCFF614VDU/@@download/ENCFF614VDU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF200PRE bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANJ, ENCFF018NEO 679447688 ENCODE Processing Pipeline 66ef1e3613943cc4d4d051909012f046 https://www.encodeproject.org/files/ENCFF200PRE/@@download/ENCFF200PRE.bam mm10 released low read length, low read depth ENCFF382BVJ bam alignments ENCSR653AVN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANH, ENCFF018NEO 625556904 ENCODE Processing Pipeline c11a8a795fed2ea894888df5770b1e48 https://www.encodeproject.org/files/ENCFF382BVJ/@@download/ENCFF382BVJ.bam mm10 released low read length, low read depth ENCFF108JXL bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF603OEF 1629038502 ENCODE Processing Pipeline 4d7f9df0f33a3a18aee22f97363f2f9a https://www.encodeproject.org/files/ENCFF108JXL/@@download/ENCFF108JXL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF925KDL bam alignments ENCSR759RVE ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF468ETJ 1368486679 ENCODE Processing Pipeline 07f68934e15a6062618a04332cfebc2c https://www.encodeproject.org/files/ENCFF925KDL/@@download/ENCFF925KDL.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF043ECE bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF106YCA 2768116083 ENCODE Processing Pipeline c402e271369a4dd48d1c11ad64144da8 https://www.encodeproject.org/files/ENCFF043ECE/@@download/ENCFF043ECE.bam mm10 released inconsistent platforms ENCFF874VSN bam alignments ENCSR496TBX ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF388QNU 2835673796 ENCODE Processing Pipeline 4715e10f155a974808865abd5969690b https://www.encodeproject.org/files/ENCFF874VSN/@@download/ENCFF874VSN.bam mm10 released inconsistent platforms ENCFF475ZGG bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANF, ENCFF018NEO 654164122 ENCODE Processing Pipeline e1ec187775676a141c1b390bfd449e28 https://www.encodeproject.org/files/ENCFF475ZGG/@@download/ENCFF475ZGG.bam mm10 released low read length, low read depth ENCFF781PWF bam alignments ENCSR198ACZ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANK, ENCFF018NEO 744331899 ENCODE Processing Pipeline 2f2a15cb9d796be0bdbd37a29c325d03 https://www.encodeproject.org/files/ENCFF781PWF/@@download/ENCFF781PWF.bam mm10 released low read length, low read depth ENCFF683RHK bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF031TNV, ENCFF406FUF 2866379936 ENCODE Processing Pipeline 336a137b1677f7f7b7079e18f0f67d90 https://www.encodeproject.org/files/ENCFF683RHK/@@download/ENCFF683RHK.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF367TEX bam alignments ENCSR736GVO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF093IVT, ENCFF900XIV 2965075780 ENCODE Processing Pipeline 614ea2d5e95a87f902f6f073064df9d8 https://www.encodeproject.org/files/ENCFF367TEX/@@download/ENCFF367TEX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF389WXF bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSY, ENCFF002DTK, ENCFF018NEO 1165477607 ENCODE Processing Pipeline 512b9dce6de48f3dc957cf37a8649c3a https://www.encodeproject.org/files/ENCFF389WXF/@@download/ENCFF389WXF.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF272ODL bam alignments ENCSR238ZCJ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DTL, ENCFF018NEO 1835977176 ENCODE Processing Pipeline c5251970e40ed0ece96fb120354803bb https://www.encodeproject.org/files/ENCFF272ODL/@@download/ENCFF272ODL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates ENCFF510NJP bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 ENCFF002ARJ, ENCFF018NEO 1123455422 ENCODE Processing Pipeline 48d28dc154e47476cec71c0a5aac77d4 https://www.encodeproject.org/files/ENCFF510NJP/@@download/ENCFF510NJP.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF879KSR bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 ENCFF002ARK, ENCFF018NEO 1344867889 ENCODE Processing Pipeline 5175d03459a4b8898202854f3d2df4dc https://www.encodeproject.org/files/ENCFF879KSR/@@download/ENCFF879KSR.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF681SBF bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARK, ENCFF018NEO 1027285219 ENCODE Processing Pipeline 1cca4fa4acd50e8faa671750c3d18ba3 https://www.encodeproject.org/files/ENCFF681SBF/@@download/ENCFF681SBF.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF319PHE bam alignments ENCSR889XXJ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARJ, ENCFF018NEO 859848677 ENCODE Processing Pipeline 83f5ddc47175636817ed553ee7e20bfc https://www.encodeproject.org/files/ENCFF319PHE/@@download/ENCFF319PHE.bam mm10 released low read depth insufficient read depth for broad peaks control ENCFF783CQI bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKB, ENCFF018NEO 1203065015 ENCODE Processing Pipeline 8ccdd5ff02a106eed783dca24cff110e https://www.encodeproject.org/files/ENCFF783CQI/@@download/ENCFF783CQI.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF038APK bam alignments ENCSR488OCA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKD, ENCFF018NEO 1490012417 ENCODE Processing Pipeline db48a854a10c3e6bd11c6e4405477143 https://www.encodeproject.org/files/ENCFF038APK/@@download/ENCFF038APK.bam mm10 released antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF846DLR bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF098VFT, ENCFF521VUV 2976491402 ENCODE Processing Pipeline 8e1c9067d47af90a2b0570f8839b98ea https://www.encodeproject.org/files/ENCFF846DLR/@@download/ENCFF846DLR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF911ZQM bam alignments ENCSR972MUO ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF307HYZ, ENCFF533PES 3111713700 ENCODE Processing Pipeline 4b9217d154c290c030c8f3bfee6726f3 https://www.encodeproject.org/files/ENCFF911ZQM/@@download/ENCFF911ZQM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF149KWW bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KLN, ENCFF018NEO 537373094 ENCODE Processing Pipeline 271bc5978020550254fd9cddfe849220 https://www.encodeproject.org/files/ENCFF149KWW/@@download/ENCFF149KWW.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF216IVM bam alignments ENCSR000CDW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLM, ENCFF018NEO 744778535 ENCODE Processing Pipeline 2bfbda85b2d39251d358e9f39efbae28 https://www.encodeproject.org/files/ENCFF216IVM/@@download/ENCFF216IVM.bam mm10 released low read length, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF936USI bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF342JMB 1591426415 ENCODE Processing Pipeline 920441fc183944faf15742025bdf27a3 https://www.encodeproject.org/files/ENCFF936USI/@@download/ENCFF936USI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF718JOG bam alignments ENCSR167ZGV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF163MIK 1738065324 ENCODE Processing Pipeline 2c9da3ab0e13759eee6c8960d2b3ca40 https://www.encodeproject.org/files/ENCFF718JOG/@@download/ENCFF718JOG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF674BRI bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF642GCV 2741633976 ENCODE Processing Pipeline 0e671622a5b4be019a6999ec9f94a794 https://www.encodeproject.org/files/ENCFF674BRI/@@download/ENCFF674BRI.bam mm10 released inconsistent platforms ENCFF915ZRV bam alignments ENCSR253IEG ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF571ECK 2584460078 ENCODE Processing Pipeline 4ff6c1647769f0bcb919ba6c72328c17 https://www.encodeproject.org/files/ENCFF915ZRV/@@download/ENCFF915ZRV.bam mm10 released inconsistent platforms ENCFF604ABD bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF714RJJ 1352720085 ENCODE Processing Pipeline 71e62b68cb390cdef497ee4ea50252b0 https://www.encodeproject.org/files/ENCFF604ABD/@@download/ENCFF604ABD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF848BQN bam alignments ENCSR311YPF ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF325BRZ 1367078986 ENCODE Processing Pipeline 4c32e6c2f555d8dcb6bee1f6721d93b1 https://www.encodeproject.org/files/ENCFF848BQN/@@download/ENCFF848BQN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF675TWH bam alignments ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETZ, ENCFF018NEO, ENCFF306HBH 1019990809 ENCODE Processing Pipeline 897d9c017c8aa4772dd4c28be4808057 https://www.encodeproject.org/files/ENCFF675TWH/@@download/ENCFF675TWH.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF366SPT bam alignments ENCSR121BWA ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETX, ENCFF018NEO 1181195138 ENCODE Processing Pipeline ab9d24fb1382f2000904d1dd7ce38885 https://www.encodeproject.org/files/ENCFF366SPT/@@download/ENCFF366SPT.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF810VYR bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF454JVE 2620607914 ENCODE Processing Pipeline 54db708581a7865b8ed55c6d6f032719 https://www.encodeproject.org/files/ENCFF810VYR/@@download/ENCFF810VYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF800KJJ bam alignments ENCSR550QED ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF622PYT, ENCFF898XLC 2776784814 ENCODE Processing Pipeline fa51594fd3104b7f2ccfc3a536ff45cc https://www.encodeproject.org/files/ENCFF800KJJ/@@download/ENCFF800KJJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF191QNB bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF523TDL 1730129247 ENCODE Processing Pipeline 2ecf2a8217495f3efdc6ec9bdeaeaddd https://www.encodeproject.org/files/ENCFF191QNB/@@download/ENCFF191QNB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF786VTB bam alignments ENCSR044SUW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF817WRW 1467280796 ENCODE Processing Pipeline 386fc06d6bfe76d6dd630d1ad5dc73f3 https://www.encodeproject.org/files/ENCFF786VTB/@@download/ENCFF786VTB.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF670ISA bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF511SEB, ENCFF806JSP 2825646565 ENCODE Processing Pipeline a56c697df3d75eeb064bb67db7ea824c https://www.encodeproject.org/files/ENCFF670ISA/@@download/ENCFF670ISA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF184WXX bam alignments ENCSR639IQR ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF003PIT, ENCFF018NEO, ENCFF661URL 2896990558 ENCODE Processing Pipeline 0f5e8825794232fb07408396d6d7e772 https://www.encodeproject.org/files/ENCFF184WXX/@@download/ENCFF184WXX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF017QIZ bam alignments ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF261ZMN 820407858 Christina Leslie, MSKCC 93877949d715dbdb7bdeb2bcf47341c4 https://www.encodeproject.org/files/ENCFF017QIZ/@@download/ENCFF017QIZ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF044SBD bam alignments ENCSR585IGO ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF827UAJ 912028349 Christina Leslie, MSKCC 3595716382046c554fa2eb049490e71f https://www.encodeproject.org/files/ENCFF044SBD/@@download/ENCFF044SBD.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF625QPV bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANN, ENCFF018NEO 890361578 ENCODE Processing Pipeline 136a183a07fce425518645afbc281510 https://www.encodeproject.org/files/ENCFF625QPV/@@download/ENCFF625QPV.bam mm10 released low read length ENCFF656DDK bam alignments ENCSR472YGQ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANQ, ENCFF018NEO 1505994497 ENCODE Processing Pipeline 53acd4199a381aadc05012acaee3803b https://www.encodeproject.org/files/ENCFF656DDK/@@download/ENCFF656DDK.bam mm10 released low read length ENCFF050IRU bam alignments ENCSR000DGT ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MRC, ENCFF018NEO 1260676154 ENCODE Processing Pipeline cedf9310886ead1f1a141fc36ebba8ed https://www.encodeproject.org/files/ENCFF050IRU/@@download/ENCFF050IRU.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF576SVA bam alignments ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF513FNP 1077057777 Christina Leslie, MSKCC 8551c54990441657f30a796a2f6a4c2e https://www.encodeproject.org/files/ENCFF576SVA/@@download/ENCFF576SVA.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF671APU bam alignments ENCSR528PQK ChIP-seq NTR:0004218 inflammation-experienced regulatory T-cells primary cell Mus musculus H3K27ac-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF915WNP 1187486645 Christina Leslie, MSKCC 0480db70f48e81380ff93fb25dbabce7 https://www.encodeproject.org/files/ENCFF671APU/@@download/ENCFF671APU.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF482UTL bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARL, ENCFF018NEO 657252150 ENCODE Processing Pipeline 33c3720072c9a0b7ef0fbf2c988f5dda https://www.encodeproject.org/files/ENCFF482UTL/@@download/ENCFF482UTL.bam mm10 released low read length, low read depth ENCFF292SSW bam alignments ENCSR050VUZ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARI, ENCFF018NEO 769632160 ENCODE Processing Pipeline 61569bd3d5b6128ed3239b29d182f99d https://www.encodeproject.org/files/ENCFF292SSW/@@download/ENCFF292SSW.bam mm10 released low read length, low read depth ENCFF316JOV bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQT, ENCFF018NEO 1200943085 ENCODE Processing Pipeline 1ca525f4e06b5be00329708747e80c3b https://www.encodeproject.org/files/ENCFF316JOV/@@download/ENCFF316JOV.bam mm10 released insufficient read depth for broad peaks control ENCFF683NKA bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQX, ENCFF018NEO 1899709758 ENCODE Processing Pipeline ef85652daad01e147687e2edebd9aa81 https://www.encodeproject.org/files/ENCFF683NKA/@@download/ENCFF683NKA.bam mm10 released insufficient read depth for broad peaks control ENCFF088KYO bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQT, ENCFF018NEO 917175119 ENCODE Processing Pipeline a3d109ce5c0648e145eee3dec0a6c1d3 https://www.encodeproject.org/files/ENCFF088KYO/@@download/ENCFF088KYO.bam mm10 released insufficient read depth for broad peaks control ENCFF517WIG bam alignments ENCSR066SPF ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQX, ENCFF018NEO 1445263880 ENCODE Processing Pipeline 2433da7d17bc35f234367f9efb72852e https://www.encodeproject.org/files/ENCFF517WIG/@@download/ENCFF517WIG.bam mm10 released insufficient read depth for broad peaks control ENCFF547NVF bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWA, ENCFF018NEO 2978741953 ENCODE Processing Pipeline df0b1204bc6f8172b8f5c4bad7d2feaf https://www.encodeproject.org/files/ENCFF547NVF/@@download/ENCFF547NVF.bam mm10 released inconsistent platforms ENCFF907JVV bam alignments ENCSR000DHY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVY, ENCFF018NEO 2995552054 ENCODE Processing Pipeline b0e320fc30e89c4aaa99aa600065fb39 https://www.encodeproject.org/files/ENCFF907JVV/@@download/ENCFF907JVV.bam mm10 released inconsistent platforms ENCFF929VOB bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KWO, ENCFF018NEO 262337583 ENCODE Processing Pipeline 1eb756223b30adcab1482a8b7745659b https://www.encodeproject.org/files/ENCFF929VOB/@@download/ENCFF929VOB.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF751ASR bam alignments ENCSR000CCU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KWT, ENCFF018NEO 410283285 ENCODE Processing Pipeline c5ca0e345201a1162a2fb3b2274f4ef0 https://www.encodeproject.org/files/ENCFF751ASR/@@download/ENCFF751ASR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF912MNS bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETK, ENCFF018NEO 557610981 ENCODE Processing Pipeline 5ba06941bfa9033781dd6c2407e16722 https://www.encodeproject.org/files/ENCFF912MNS/@@download/ENCFF912MNS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF673JYS bam alignments ENCSR458FBL ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETJ, ENCFF018NEO, ENCFF083MUU 478957831 ENCODE Processing Pipeline 8af1ab3d8ee7f1cfe9e991aeb72e42ae https://www.encodeproject.org/files/ENCFF673JYS/@@download/ENCFF673JYS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF202UDK bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALO, ENCFF018NEO 832474647 ENCODE Processing Pipeline cf0f1a936d77478343cab9c3ce6bd4f0 https://www.encodeproject.org/files/ENCFF202UDK/@@download/ENCFF202UDK.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF265OHW bam alignments ENCSR906UJW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALS, ENCFF018NEO 991539996 ENCODE Processing Pipeline b7fe67ecb8ccb9be3901e0b83698a0a7 https://www.encodeproject.org/files/ENCFF265OHW/@@download/ENCFF265OHW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF748WAP bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXD, ENCFF018NEO 896623889 ENCODE Processing Pipeline 4d57be1d051b77ef59a08ecb07b7f687 https://www.encodeproject.org/files/ENCFF748WAP/@@download/ENCFF748WAP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF687UZO bam alignments ENCSR110TIW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF828KNV 892342526 ENCODE Processing Pipeline 9b952d3c0fe2542d8af319903c7999b9 https://www.encodeproject.org/files/ENCFF687UZO/@@download/ENCFF687UZO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF333WFN bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LVP, ENCFF018NEO 2443552880 ENCODE Processing Pipeline bdf716ef7acfc880f0151f51023deb5b https://www.encodeproject.org/files/ENCFF333WFN/@@download/ENCFF333WFN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF575AMM bam alignments ENCSR000DHO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LVW, ENCFF018NEO 3025193190 ENCODE Processing Pipeline 0b01d9fddb506dcb657fdcd3e07fea84 https://www.encodeproject.org/files/ENCFF575AMM/@@download/ENCFF575AMM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF885NWI bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSE, ENCFF018NEO, ENCFF458UQE 1107695140 ENCODE Processing Pipeline c99a06400a0d116866e77fd3c45ef3f1 https://www.encodeproject.org/files/ENCFF885NWI/@@download/ENCFF885NWI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF933AXR bam alignments ENCSR448TTC ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSF, ENCFF018NEO, ENCFF999ZMD 1177151634 ENCODE Processing Pipeline 5e2dc49e2334547012ed006b122f7c88 https://www.encodeproject.org/files/ENCFF933AXR/@@download/ENCFF933AXR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF102COW bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSD, ENCFF018NEO 1098944261 ENCODE Processing Pipeline ede888e02e50129d8c21de223735c684 https://www.encodeproject.org/files/ENCFF102COW/@@download/ENCFF102COW.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF077CVJ bam alignments ENCSR450ITF ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSC, ENCFF018NEO 1022991960 ENCODE Processing Pipeline ef22af64c78d4319cc6a2d76997afd2b https://www.encodeproject.org/files/ENCFF077CVJ/@@download/ENCFF077CVJ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF366OLL bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF483KSN 1841877140 ENCODE Processing Pipeline 993b6eb8bbf6b4dece5998a5e1b86761 https://www.encodeproject.org/files/ENCFF366OLL/@@download/ENCFF366OLL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF258HLV bam alignments ENCSR373TMR ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF832UAS 2057306178 ENCODE Processing Pipeline ac89db189370bddd2ce86affade8fd1b https://www.encodeproject.org/files/ENCFF258HLV/@@download/ENCFF258HLV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF511ZHI bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQM, ENCFF002DQN, ENCFF002DQO, ENCFF018NEO 943273677 ENCODE Processing Pipeline 16a3932e4bd4332043cf8609a70a3e57 https://www.encodeproject.org/files/ENCFF511ZHI/@@download/ENCFF511ZHI.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF402GZE bam alignments ENCSR689NXE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQJ, ENCFF002DQK, ENCFF002DQQ, ENCFF018NEO 989436483 ENCODE Processing Pipeline 8572a9ae84d2166f929580c241eaea00 https://www.encodeproject.org/files/ENCFF402GZE/@@download/ENCFF402GZE.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF895XCG bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF947YLP 1760253342 ENCODE Processing Pipeline 7c8171c70b512310158070b94329b6e4 https://www.encodeproject.org/files/ENCFF895XCG/@@download/ENCFF895XCG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF640MMJ bam alignments ENCSR704IWS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF797LPG 1662185899 ENCODE Processing Pipeline 81292e3b3edd5534171ee7b964b37d6e https://www.encodeproject.org/files/ENCFF640MMJ/@@download/ENCFF640MMJ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF906LVL bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 801826294 ENCODE Processing Pipeline a47fda7bd69d364dc655bfd785738738 https://www.encodeproject.org/files/ENCFF906LVL/@@download/ENCFF906LVL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF956XJP bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 729332962 ENCODE Processing Pipeline 0541210e16251f367d3cc52573fd3afd https://www.encodeproject.org/files/ENCFF956XJP/@@download/ENCFF956XJP.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF465JMB bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KNY, ENCFF018NEO 512864755 ENCODE Processing Pipeline 31d9a2fa334175e48aa6073192ed0a2e https://www.encodeproject.org/files/ENCFF465JMB/@@download/ENCFF465JMB.bam mm10 released low read length, low read depth insufficient read depth ENCFF515GCB bam alignments ENCSR000CAX ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KNX, ENCFF018NEO 416651403 ENCODE Processing Pipeline a40d3aa48f5392616ea46d81577dca9d https://www.encodeproject.org/files/ENCFF515GCB/@@download/ENCFF515GCB.bam mm10 released low read length, low read depth insufficient read depth ENCFF150FTG bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF369BJC 1553913250 ENCODE Processing Pipeline e53f31c3e1972df8a02af3b6b253aee9 https://www.encodeproject.org/files/ENCFF150FTG/@@download/ENCFF150FTG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF192YAM bam alignments ENCSR190RKJ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF101OYN 1831942238 ENCODE Processing Pipeline 69df3fa703b6ab81cfc47bb761ef096a https://www.encodeproject.org/files/ENCFF192YAM/@@download/ENCFF192YAM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF953ENB bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF001NBO, ENCFF018NEO 662887267 ENCODE Processing Pipeline 8516666a3ae9f49182006226f4d79a35 https://www.encodeproject.org/files/ENCFF953ENB/@@download/ENCFF953ENB.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF080OTQ bam alignments ENCSR000ADX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day H3K36me3-mouse DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF001NBL, ENCFF018NEO 869191139 ENCODE Processing Pipeline a1ae3d08aea6ccec022b8fd081d95d30 https://www.encodeproject.org/files/ENCFF080OTQ/@@download/ENCFF080OTQ.bam mm10 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, control insufficient read depth ENCFF446QOS bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGG, ENCFF018NEO 997090575 ENCODE Processing Pipeline 6a909315361a18c73f1243087d39d42b https://www.encodeproject.org/files/ENCFF446QOS/@@download/ENCFF446QOS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF508LDF bam alignments ENCSR014YAY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGD, ENCFF018NEO 1171072627 ENCODE Processing Pipeline 194a07ed8b9382591c40b8d1b4b0f646 https://www.encodeproject.org/files/ENCFF508LDF/@@download/ENCFF508LDF.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF180YAD bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 327606791 ENCODE Processing Pipeline 47cb3f34235d3ca0c05be0f55f5d386c https://www.encodeproject.org/files/ENCFF180YAD/@@download/ENCFF180YAD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF198ZVJ bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 338293825 ENCODE Processing Pipeline 7f7dfc13b916f2c4da41a2c147a74b9f https://www.encodeproject.org/files/ENCFF198ZVJ/@@download/ENCFF198ZVJ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF212FRL bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF509SAZ 980088202 ENCODE Processing Pipeline a3bb18c658ae1b3ab388c26f9075d2cb https://www.encodeproject.org/files/ENCFF212FRL/@@download/ENCFF212FRL.bam mm10 released low read length, mixed read lengths ENCFF797AOJ bam alignments ENCSR314FGC ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF368AXL 766778516 ENCODE Processing Pipeline 1fe2f8aeb4a9e851cfd2ff1c5b43b05d https://www.encodeproject.org/files/ENCFF797AOJ/@@download/ENCFF797AOJ.bam mm10 released low read length, mixed read lengths ENCFF380GQR bam alignments ENCSR000AIM ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus SRF-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IHX, ENCFF001IHY, ENCFF001IHZ, ENCFF018NEO 677419232 ENCODE Processing Pipeline 8661c79f35ab6219ef0a1ed6e0548886 https://www.encodeproject.org/files/ENCFF380GQR/@@download/ENCFF380GQR.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF443AQP bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KOE, ENCFF018NEO 395976439 ENCODE Processing Pipeline 7b0f96ab3d57452c04216c811acd9d19 https://www.encodeproject.org/files/ENCFF443AQP/@@download/ENCFF443AQP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF171WKN bam alignments ENCSR000CDT ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNZ, ENCFF018NEO 550113063 ENCODE Processing Pipeline 6f6b7dfaf384947b2e7c97cc48e84a45 https://www.encodeproject.org/files/ENCFF171WKN/@@download/ENCFF171WKN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF177BCL bam alignments ENCSR000AHP ChIP-seq EFO:0001098 C2C12 cell line Mus musculus H3ac-mouse DNA see document see document False 2011-11-28 ENCODE 1 32 ENCFF001HZU, ENCFF001HZV, ENCFF001HZW, ENCFF018NEO 620282760 ENCODE Processing Pipeline 7df3e6df016297de57f455f94148ef42 https://www.encodeproject.org/files/ENCFF177BCL/@@download/ENCFF177BCL.bam mm10 released low read depth insufficient read length, control insufficient read depth ENCFF797BHA bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF185WLY, ENCFF586VRZ 2806355444 ENCODE Processing Pipeline d5d316880a4d884a9e79fbdeb6bcce28 https://www.encodeproject.org/files/ENCFF797BHA/@@download/ENCFF797BHA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF729MAQ bam alignments ENCSR129OJN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF382RMS, ENCFF525ZNI 2869852994 ENCODE Processing Pipeline 4e5d1ca51163bbedbd2e69a437acde50 https://www.encodeproject.org/files/ENCFF729MAQ/@@download/ENCFF729MAQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF716YFY bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYG, ENCFF018NEO 1035564231 ENCODE Processing Pipeline 4fbc4085da40f9b099cfaea6756e0558 https://www.encodeproject.org/files/ENCFF716YFY/@@download/ENCFF716YFY.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF880WLG bam alignments ENCSR000CCH ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYC, ENCFF018NEO 299798363 ENCODE Processing Pipeline f369b0bb74361cb22536bc0efa352dc3 https://www.encodeproject.org/files/ENCFF880WLG/@@download/ENCFF880WLG.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF209UFJ bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYB, ENCFF018NEO 2462848031 ENCODE Processing Pipeline 1887252bd46198f6642ec8af4f56d812 https://www.encodeproject.org/files/ENCFF209UFJ/@@download/ENCFF209UFJ.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF733URD bam alignments ENCSR000DHN ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYD, ENCFF018NEO 2254120252 ENCODE Processing Pipeline 83c1263e2076afa044b006976ad491ed https://www.encodeproject.org/files/ENCFF733URD/@@download/ENCFF733URD.bam mm10 released low read length, inconsistent platforms, mixed read lengths control insufficient read depth ENCFF774QGM bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF094DUO 1499880795 ENCODE Processing Pipeline 19449197fd7f64aa7905563574d7c01a https://www.encodeproject.org/files/ENCFF774QGM/@@download/ENCFF774QGM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF742PPH bam alignments ENCSR286OKN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF374XLP 1952601301 ENCODE Processing Pipeline f4163d686d286dbb0b5f0bebab690b8f https://www.encodeproject.org/files/ENCFF742PPH/@@download/ENCFF742PPH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF381TPF bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JXW, ENCFF018NEO 338307824 ENCODE Processing Pipeline a32d5a6d8ba79051e22b2a1e059bf723 https://www.encodeproject.org/files/ENCFF381TPF/@@download/ENCFF381TPF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF667ERP bam alignments ENCSR000CCL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JXV, ENCFF018NEO 441587097 ENCODE Processing Pipeline a1b56c203a0e64ff42dc26509d9541b5 https://www.encodeproject.org/files/ENCFF667ERP/@@download/ENCFF667ERP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF173WEE bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF430SDY, ENCFF784EVF 2849592633 ENCODE Processing Pipeline cec1b218bb78ba7dbe105fb7ebdbec77 https://www.encodeproject.org/files/ENCFF173WEE/@@download/ENCFF173WEE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF474PYR bam alignments ENCSR037HCS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF086NWP, ENCFF141HSU 2875369065 ENCODE Processing Pipeline c4e18e9db2645e9f22cd39194f73ec39 https://www.encodeproject.org/files/ENCFF474PYR/@@download/ENCFF474PYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF439ENR bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUH, ENCFF018NEO 662427566 ENCODE Processing Pipeline 348c0e359bf66fc9faeb1c991e9e37cb https://www.encodeproject.org/files/ENCFF439ENR/@@download/ENCFF439ENR.bam mm10 released low read length, low read depth ENCFF242GSM bam alignments ENCSR427OZM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUF, ENCFF018NEO 605469374 ENCODE Processing Pipeline 0d0b85fc15f267ab33b83caecb70bfc8 https://www.encodeproject.org/files/ENCFF242GSM/@@download/ENCFF242GSM.bam mm10 released low read length, low read depth ENCFF419UYK bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 30 ENCFF001KVI, ENCFF018NEO 952269288 ENCODE Processing Pipeline ca6da49defbc7b42f636793784fc6fe5 https://www.encodeproject.org/files/ENCFF419UYK/@@download/ENCFF419UYK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF493BXF bam alignments ENCSR000CFT ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 30 ENCFF001KVK, ENCFF018NEO 1465309308 ENCODE Processing Pipeline ded78b35a40c1ea66d256d104427e8d8 https://www.encodeproject.org/files/ENCFF493BXF/@@download/ENCFF493BXF.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF855HHK bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF596PCR, ENCFF662PLM 2709596056 ENCODE Processing Pipeline 97254da6158dcb3352b452daad03b0d6 https://www.encodeproject.org/files/ENCFF855HHK/@@download/ENCFF855HHK.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF578EIN bam alignments ENCSR258AED ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF802AQP 2716382748 ENCODE Processing Pipeline fce83824288c2f339ad55be86984c39b https://www.encodeproject.org/files/ENCFF578EIN/@@download/ENCFF578EIN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF210FOM bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFR, ENCFF018NEO 545487929 ENCODE Processing Pipeline 9791de47e4998ee5c93f0a1a90a416f7 https://www.encodeproject.org/files/ENCFF210FOM/@@download/ENCFF210FOM.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF016JGX bam alignments ENCSR000CGQ ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFX, ENCFF018NEO 230123534 ENCODE Processing Pipeline 51956f0154cd2166f539ce4eff11a0ef https://www.encodeproject.org/files/ENCFF016JGX/@@download/ENCFF016JGX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, moderate library complexity, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF692RQR bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LTR, ENCFF018NEO 110683993 ENCODE Processing Pipeline 480d7d9a9c102d9360cd8f4440032bcf https://www.encodeproject.org/files/ENCFF692RQR/@@download/ENCFF692RQR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF038FZW bam alignments ENCSR000CEI ChIP-seq UBERON:0000955 brain tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 30 ENCFF001LTX, ENCFF018NEO 200699036 ENCODE Processing Pipeline 5eb0f861d497d02e5142a2ad329a9389 https://www.encodeproject.org/files/ENCFF038FZW/@@download/ENCFF038FZW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms severe bottlenecking, poor library complexity, insufficient read length extremely low read depth ENCFF260JQL bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF436QHR, ENCFF894HPP 3042177580 ENCODE Processing Pipeline 4b6aee24b6c860802ca573107e8d31cd https://www.encodeproject.org/files/ENCFF260JQL/@@download/ENCFF260JQL.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF988OVD bam alignments ENCSR447BVY ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF010VIL, ENCFF018NEO, ENCFF370WFQ 2972223056 ENCODE Processing Pipeline d33aca271c68aec13411645ecf95bafc https://www.encodeproject.org/files/ENCFF988OVD/@@download/ENCFF988OVD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF578DNF bam alignments ENCSR000AIU ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IFX, ENCFF001IFY, ENCFF018NEO 749420778 ENCODE Processing Pipeline 7e1a6af875ad8ca1c9cffdcc5254c594 https://www.encodeproject.org/files/ENCFF578DNF/@@download/ENCFF578DNF.bam mm10 released control low read depth, low read depth insufficient read length ENCFF511IUJ bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMJ, ENCFF018NEO 392748972 ENCODE Processing Pipeline 5c0e61f6ea0087b5c69333fc5df470b1 https://www.encodeproject.org/files/ENCFF511IUJ/@@download/ENCFF511IUJ.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF939TYA bam alignments ENCSR000CDU ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMK, ENCFF018NEO 423508419 ENCODE Processing Pipeline 421efdab3e771e36b9af77aaabd7eec2 https://www.encodeproject.org/files/ENCFF939TYA/@@download/ENCFF939TYA.bam mm10 released low read length, inconsistent platforms, low read depth insufficient read depth ENCFF725NLU bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KQT, ENCFF018NEO 519109831 ENCODE Processing Pipeline 9acebcb688f021bcc588c7a00e1a09c6 https://www.encodeproject.org/files/ENCFF725NLU/@@download/ENCFF725NLU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF570QUU bam alignments ENCSR000CER ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KQS, ENCFF018NEO 710672449 ENCODE Processing Pipeline cd57b815d3a78ff4154a6c671ecffa40 https://www.encodeproject.org/files/ENCFF570QUU/@@download/ENCFF570QUU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF025FTE bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AND, ENCFF018NEO 718803038 ENCODE Processing Pipeline 8b2f706e5d58740a4321690b1d572ee2 https://www.encodeproject.org/files/ENCFF025FTE/@@download/ENCFF025FTE.bam mm10 released low read length, low read depth ENCFF186BBQ bam alignments ENCSR875ZAO ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANB, ENCFF018NEO 867371045 ENCODE Processing Pipeline 969359302db303c930fe8aafe7c7c0d9 https://www.encodeproject.org/files/ENCFF186BBQ/@@download/ENCFF186BBQ.bam mm10 released low read length, low read depth ENCFF182UHB bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRP, ENCFF018NEO 602547166 ENCODE Processing Pipeline 1b988aceefaa99899f6e1c232aca7cca https://www.encodeproject.org/files/ENCFF182UHB/@@download/ENCFF182UHB.bam mm10 released low read length, low read depth ENCFF420SSZ bam alignments ENCSR088UKA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRQ, ENCFF018NEO 1010844615 ENCODE Processing Pipeline 3cb5a973ce39fbdc792d52c2126702ca https://www.encodeproject.org/files/ENCFF420SSZ/@@download/ENCFF420SSZ.bam mm10 released low read length, low read depth ENCFF333YHD bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 451660793 ENCODE Processing Pipeline 46ebd0c9194175f50b671618fbe62bce https://www.encodeproject.org/files/ENCFF333YHD/@@download/ENCFF333YHD.bam mm10 released low read length, control low read depth insufficient read depth ENCFF059ZFK bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 370145426 ENCODE Processing Pipeline 17653b7ab6ec7f44dce53339652d0a73 https://www.encodeproject.org/files/ENCFF059ZFK/@@download/ENCFF059ZFK.bam mm10 released low read length, control low read depth insufficient read depth ENCFF047LRB bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGX, ENCFF018NEO 789613296 ENCODE Processing Pipeline b139269414cecc6223f6f3e7eb5d8740 https://www.encodeproject.org/files/ENCFF047LRB/@@download/ENCFF047LRB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF283HFS bam alignments ENCSR489HYX ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGL, ENCFF018NEO 882665158 ENCODE Processing Pipeline 40ee832da057fb954aca5bdba55b5f27 https://www.encodeproject.org/files/ENCFF283HFS/@@download/ENCFF283HFS.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF331CEU bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQZ, ENCFF018NEO 1506915431 ENCODE Processing Pipeline dc616e2da38bfeb6d17c535f31bdd6a7 https://www.encodeproject.org/files/ENCFF331CEU/@@download/ENCFF331CEU.bam mm10 released insufficient read depth for broad peaks control ENCFF508LNS bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQV, ENCFF018NEO 1386134453 ENCODE Processing Pipeline daa1a453a8e7dbee43841475e9392231 https://www.encodeproject.org/files/ENCFF508LNS/@@download/ENCFF508LNS.bam mm10 released insufficient read depth for broad peaks control ENCFF507BQX bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQZ, ENCFF018NEO 1151706873 ENCODE Processing Pipeline e48c3bca614481345c07a638bab5fc52 https://www.encodeproject.org/files/ENCFF507BQX/@@download/ENCFF507BQX.bam mm10 released insufficient read depth for broad peaks control ENCFF858PPY bam alignments ENCSR898PML ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQV, ENCFF018NEO 1062179944 ENCODE Processing Pipeline 2b40158431c1691da830477b85cabb3e https://www.encodeproject.org/files/ENCFF858PPY/@@download/ENCFF858PPY.bam mm10 released insufficient read depth for broad peaks control ENCFF224RCU bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZSV, ENCFF018NEO 977434247 ENCODE Processing Pipeline 46b3bb16004737932f8fb908aa89f9c5 https://www.encodeproject.org/files/ENCFF224RCU/@@download/ENCFF224RCU.bam mm10 released low read length ENCFF158YWA bam alignments ENCSR286IGS ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZSS, ENCFF018NEO 1050526452 ENCODE Processing Pipeline 1e4a2a071ec3725429564d3f716ca755 https://www.encodeproject.org/files/ENCFF158YWA/@@download/ENCFF158YWA.bam mm10 released low read length ENCFF517DFW bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ARC, ENCFF018NEO 1216950146 ENCODE Processing Pipeline fef0e920f685a889dd0b37adaac28f61 https://www.encodeproject.org/files/ENCFF517DFW/@@download/ENCFF517DFW.bam mm10 released insufficient read depth for broad peaks control ENCFF040DTM bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARH, ENCFF018NEO 1640988539 ENCODE Processing Pipeline 2c2e1850f47e09eeb09efd9dbbdea4c7 https://www.encodeproject.org/files/ENCFF040DTM/@@download/ENCFF040DTM.bam mm10 released insufficient read depth for broad peaks control ENCFF922FWV bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARH, ENCFF018NEO 1258909760 ENCODE Processing Pipeline ba66f279e6b53fd3034c620f19b03f78 https://www.encodeproject.org/files/ENCFF922FWV/@@download/ENCFF922FWV.bam mm10 released insufficient read depth for broad peaks control ENCFF782YCY bam alignments ENCSR241RIG ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ARC, ENCFF018NEO 931454082 ENCODE Processing Pipeline 02276b380ffb0187d324afdbb8c52328 https://www.encodeproject.org/files/ENCFF782YCY/@@download/ENCFF782YCY.bam mm10 released insufficient read depth for broad peaks control ENCFF878DSH bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF336KVB 1014600217 ENCODE Processing Pipeline 73a75749a732258d1b49fb11a627d5c9 https://www.encodeproject.org/files/ENCFF878DSH/@@download/ENCFF878DSH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF856EJO bam alignments ENCSR161DAW ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF446GHW 821892484 ENCODE Processing Pipeline 104a562a8b67981bfeda03db879e28c6 https://www.encodeproject.org/files/ENCFF856EJO/@@download/ENCFF856EJO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF598VTL bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KJM, ENCFF018NEO 906808439 ENCODE Processing Pipeline 6714ca2a30e4309b0976f636472b9255 https://www.encodeproject.org/files/ENCFF598VTL/@@download/ENCFF598VTL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF339VPQ bam alignments ENCSR000CFQ ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KJK, ENCFF018NEO 874743651 ENCODE Processing Pipeline 62dae6deb83934994a9d29920f364f26 https://www.encodeproject.org/files/ENCFF339VPQ/@@download/ENCFF339VPQ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF911DNW bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQA, ENCFF018NEO 925023019 ENCODE Processing Pipeline 1bc2227ade2b66ade9597e1a3eb34332 https://www.encodeproject.org/files/ENCFF911DNW/@@download/ENCFF911DNW.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF831XWF bam alignments ENCSR645QSY ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APX, ENCFF018NEO 776899419 ENCODE Processing Pipeline 6d90dccfd14303c0c4b425fe0433274e https://www.encodeproject.org/files/ENCFF831XWF/@@download/ENCFF831XWF.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF304BRA bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQN, ENCFF018NEO 824874154 ENCODE Processing Pipeline 3de884dd1c0321a961aaac4a46a19d3c https://www.encodeproject.org/files/ENCFF304BRA/@@download/ENCFF304BRA.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF255MPO bam alignments ENCSR497YBQ ChIP-seq UBERON:0000945 stomach tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQP, ENCFF018NEO 899876502 ENCODE Processing Pipeline f1b549a0249756f8d1ed111b53688dfd https://www.encodeproject.org/files/ENCFF255MPO/@@download/ENCFF255MPO.bam mm10 released mixed read lengths, low read length, low read depth insufficient read depth for broad peaks control ENCFF802PSU bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 30 ENCFF001KUP, ENCFF018NEO 247930831 ENCODE Processing Pipeline d0dc0aae822719aac90ce4b64cb046d7 https://www.encodeproject.org/files/ENCFF802PSU/@@download/ENCFF802PSU.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF909FML bam alignments ENCSR000CBC ChIP-seq UBERON:0002106 spleen tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 30 ENCFF001KUM, ENCFF018NEO 410759170 ENCODE Processing Pipeline 3bd4233dffee6da4bb410ed97cb7bf1c https://www.encodeproject.org/files/ENCFF909FML/@@download/ENCFF909FML.bam mm10 released inconsistent platforms insufficient read depth, insufficient read length, control insufficient read depth ENCFF886NKI bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGS, ENCFF018NEO 1438747095 ENCODE Processing Pipeline a7fd32e5b1115904d4751b65d6d3f704 https://www.encodeproject.org/files/ENCFF886NKI/@@download/ENCFF886NKI.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF676PSX bam alignments ENCSR337XUK ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGT, ENCFF018NEO 1471236130 ENCODE Processing Pipeline dc34a894deee29915e36cc09b934ece6 https://www.encodeproject.org/files/ENCFF676PSX/@@download/ENCFF676PSX.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth, control insufficient read depth ENCFF769HGQ bam alignments ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF165FEC 2063262178 Christina Leslie, MSKCC d24dfde4437df6aca2e7380c3809c847 https://www.encodeproject.org/files/ENCFF769HGQ/@@download/ENCFF769HGQ.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF300USM bam alignments ENCSR969CUM ChIP-seq NTR:0004148 activated regulatory T-cells primary cell Mus musculus H3K27me3-mouse DNA False 2017-03-07 GGR 1 ENCFF006WGU, ENCFF872EPX 2223515526 Christina Leslie, MSKCC 81467a8857ad0ee11c50cae95cbfdc57 https://www.encodeproject.org/files/ENCFF300USM/@@download/ENCFF300USM.bam mm10 released experiment not submitted to GEO, NTR biosample unreplicated experiment ENCFF037YEE bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APT, ENCFF018NEO 830908174 ENCODE Processing Pipeline 8bde96b44b642a03e4e624fc1ef1bafc https://www.encodeproject.org/files/ENCFF037YEE/@@download/ENCFF037YEE.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF411XWG bam alignments ENCSR244YQD ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APQ, ENCFF018NEO 917452662 ENCODE Processing Pipeline 6a6896a3d92f2a94bde133934c2247ec https://www.encodeproject.org/files/ENCFF411XWG/@@download/ENCFF411XWG.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF148SON bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF069FVN, ENCFF629NUN 838649479 ENCODE Processing Pipeline 81bb78bd824a686dd0fa98d27ec41da4 https://www.encodeproject.org/files/ENCFF148SON/@@download/ENCFF148SON.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF295UQF bam alignments ENCSR205XBQ ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF087GGM 1197774876 ENCODE Processing Pipeline c97b511ce89d52dab1053da87a926f6e https://www.encodeproject.org/files/ENCFF295UQF/@@download/ENCFF295UQF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF710XZJ bam alignments ENCSR000AID ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus MYOG-mouse DNA see document see document False 2011-11-23 ENCODE 1 32 ENCFF001IGB, ENCFF001IGC, ENCFF001IGD, ENCFF001IGE, ENCFF001IGG, ENCFF001IGH, ENCFF018NEO 316755738 ENCODE Processing Pipeline 3249c99cad3154cc425ca111812b8d2a https://www.encodeproject.org/files/ENCFF710XZJ/@@download/ENCFF710XZJ.bam mm10 released mild to moderate bottlenecking insufficient read depth, insufficient read length, control insufficient read depth ENCFF170OCZ bam alignments ENCSR000AHT ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus H3K4me3-mouse DNA see document see document False 2011-11-28 ENCODE 1 50 ENCFF001IBH, ENCFF018NEO 1048927414 ENCODE Processing Pipeline 341228449eb00896923490ac8ee4ed3b https://www.encodeproject.org/files/ENCFF170OCZ/@@download/ENCFF170OCZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, control low read depth ENCFF033LMW bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF943DLO 1975153571 ENCODE Processing Pipeline 94a0833e220efcaff2fb39e52765bf7d https://www.encodeproject.org/files/ENCFF033LMW/@@download/ENCFF033LMW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF423VHR bam alignments ENCSR780NWL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF880SIV 1645947011 ENCODE Processing Pipeline 78c68c97baa899712e457958754ecaa7 https://www.encodeproject.org/files/ENCFF423VHR/@@download/ENCFF423VHR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF814RAT bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF267KQD, ENCFF321TUD, ENCFF324AEZ 2857505279 ENCODE Processing Pipeline b0a5e41ffbd41e836dd696cefbe5655e https://www.encodeproject.org/files/ENCFF814RAT/@@download/ENCFF814RAT.bam mm10 released sequencing runs labeled as technical replicates ENCFF904KQI bam alignments ENCSR295GGT ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF165AZK, ENCFF637RQH, ENCFF765PTY 2855527847 ENCODE Processing Pipeline 5d01e5ae5c2e439dd41643fdd25712ca https://www.encodeproject.org/files/ENCFF904KQI/@@download/ENCFF904KQI.bam mm10 released sequencing runs labeled as technical replicates ENCFF160VSE bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF532FXB, ENCFF704GKQ, ENCFF905ZVU 2494917020 ENCODE Processing Pipeline 0128fe6f94f6e4a18eefaf141bfda7c1 https://www.encodeproject.org/files/ENCFF160VSE/@@download/ENCFF160VSE.bam mm10 released sequencing runs labeled as technical replicates ENCFF048BGA bam alignments ENCSR545RUT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF418BAW, ENCFF943KNE 2796238806 ENCODE Processing Pipeline eeacd3a5a38b58e53559bf0b7c7d7969 https://www.encodeproject.org/files/ENCFF048BGA/@@download/ENCFF048BGA.bam mm10 released sequencing runs labeled as technical replicates ENCFF736GZB bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF309JOG, ENCFF356FJF 1402753939 ENCODE Processing Pipeline 3349aa4a48ee5076045863fd3d20085b https://www.encodeproject.org/files/ENCFF736GZB/@@download/ENCFF736GZB.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF106FYX bam alignments ENCSR754AXU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF667WML 1179515221 ENCODE Processing Pipeline bad325ea06c6b10b707e5cb2de7826ab https://www.encodeproject.org/files/ENCFF106FYX/@@download/ENCFF106FYX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF223EIC bam alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 1 50 ENCFF018NEO, ENCFF342LZF, ENCFF446IQB 1453453641 ENCODE Processing Pipeline 96f6fdc3fe15aeddba67a5c53b53f0c1 https://www.encodeproject.org/files/ENCFF223EIC/@@download/ENCFF223EIC.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF592ZNN bam alignments ENCSR972LUE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-30 ENCODE 2 50 ENCFF018NEO, ENCFF057XGK 2092615460 ENCODE Processing Pipeline f5810dd16fe649d49bf59b83a0fd4bf6 https://www.encodeproject.org/files/ENCFF592ZNN/@@download/ENCFF592ZNN.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF434UMB bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 578305981 ENCODE Processing Pipeline 9a1ee1dce97f6ce5a9cfb63a4794099d https://www.encodeproject.org/files/ENCFF434UMB/@@download/ENCFF434UMB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF346RIK bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 675903221 ENCODE Processing Pipeline 826ee8b8ac6f5809558a9fe7edc18ef3 https://www.encodeproject.org/files/ENCFF346RIK/@@download/ENCFF346RIK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF231HNB bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF037ZIA, ENCFF983QZJ 2697520035 ENCODE Processing Pipeline e94466402afb8eb0ee0b964dbbbbb241 https://www.encodeproject.org/files/ENCFF231HNB/@@download/ENCFF231HNB.bam mm10 released sequencing runs labeled as technical replicates ENCFF396QPU bam alignments ENCSR220PXJ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF323RQH, ENCFF523IZM, ENCFF554IHG 2749838403 ENCODE Processing Pipeline d7793e746925aca885a70d6e6e7a7eb7 https://www.encodeproject.org/files/ENCFF396QPU/@@download/ENCFF396QPU.bam mm10 released sequencing runs labeled as technical replicates ENCFF745XER bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KCX, ENCFF018NEO 297932786 ENCODE Processing Pipeline 7f08d88a2b17bd40f56cd64093022d1b https://www.encodeproject.org/files/ENCFF745XER/@@download/ENCFF745XER.bam mm10 released low read length, low read depth insufficient read depth ENCFF555HBY bam alignments ENCSR000CAU ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KDF, ENCFF018NEO 657336959 ENCODE Processing Pipeline e560859f5a04f2d4e4d12cb910e39cb3 https://www.encodeproject.org/files/ENCFF555HBY/@@download/ENCFF555HBY.bam mm10 released low read length, low read depth insufficient read depth ENCFF944YMB bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRN, ENCFF018NEO 682336092 ENCODE Processing Pipeline fa249b65747898e1a165cc8cbbb4a64a https://www.encodeproject.org/files/ENCFF944YMB/@@download/ENCFF944YMB.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF265DHQ bam alignments ENCSR531RZS ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRO, ENCFF018NEO 660325502 ENCODE Processing Pipeline d882f903b293cf76ccd1b02415ee267c https://www.encodeproject.org/files/ENCFF265DHQ/@@download/ENCFF265DHQ.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF039PYR bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF196OLK 2820383871 ENCODE Processing Pipeline d0645af8e486ddd6e91bfec8cdb13ddb https://www.encodeproject.org/files/ENCFF039PYR/@@download/ENCFF039PYR.bam mm10 released inconsistent platforms ENCFF667UPO bam alignments ENCSR918ZSJ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF454VHJ 2774025779 ENCODE Processing Pipeline 3205850e53e7f0ff1d836ee77341af3d https://www.encodeproject.org/files/ENCFF667UPO/@@download/ENCFF667UPO.bam mm10 released inconsistent platforms ENCFF646NUH bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF864XTW 1554938633 ENCODE Processing Pipeline ce4a3e807c596c339acb2d46e8c50914 https://www.encodeproject.org/files/ENCFF646NUH/@@download/ENCFF646NUH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF131ZRV bam alignments ENCSR416OYH ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF527PWY 1714994978 ENCODE Processing Pipeline ba11d3fb3b302836736e8f0e1e4a52eb https://www.encodeproject.org/files/ENCFF131ZRV/@@download/ENCFF131ZRV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF945UFA bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQI, ENCFF018NEO 732900934 ENCODE Processing Pipeline 650ca02412e3134906536a3bdf37bae1 https://www.encodeproject.org/files/ENCFF945UFA/@@download/ENCFF945UFA.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF688CVA bam alignments ENCSR280SYC ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQJ, ENCFF018NEO 944005568 ENCODE Processing Pipeline 9ab75020e3540350afd2287e4fe02b84 https://www.encodeproject.org/files/ENCFF688CVA/@@download/ENCFF688CVA.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF472ZSL bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRG, ENCFF018NEO 555174458 ENCODE Processing Pipeline f5adca8acbc69512350e5f1dcbc705bf https://www.encodeproject.org/files/ENCFF472ZSL/@@download/ENCFF472ZSL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF635BLS bam alignments ENCSR222IHX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRE, ENCFF018NEO 766538000 ENCODE Processing Pipeline 535e7c68c9829d7d332af1ad93c92aaf https://www.encodeproject.org/files/ENCFF635BLS/@@download/ENCFF635BLS.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF524MMG bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 597649095 ENCODE Processing Pipeline 4db7a883ac01906dbdec5dde29dc2069 https://www.encodeproject.org/files/ENCFF524MMG/@@download/ENCFF524MMG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF755CWT bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 618654297 ENCODE Processing Pipeline 80fe7cf10cedae9caf422e9d9fe0b02e https://www.encodeproject.org/files/ENCFF755CWT/@@download/ENCFF755CWT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF401RKM bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF051ZGY 1302766661 ENCODE Processing Pipeline debe4fc228932d4a70409d80bae5a03b https://www.encodeproject.org/files/ENCFF401RKM/@@download/ENCFF401RKM.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF669NCH bam alignments ENCSR305GII ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF728HAD 1790934400 ENCODE Processing Pipeline cec9d0369491562ce2211f4ffae2432a https://www.encodeproject.org/files/ENCFF669NCH/@@download/ENCFF669NCH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF160FCQ bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQS, ENCFF018NEO 1941336282 ENCODE Processing Pipeline ee23e052d3a1dab789e3ee591070d4c6 https://www.encodeproject.org/files/ENCFF160FCQ/@@download/ENCFF160FCQ.bam mm10 released insufficient read depth for broad peaks control ENCFF504TMU bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQU, ENCFF018NEO 1785444949 ENCODE Processing Pipeline d4678b73bb244e5749f54c1fc8f99782 https://www.encodeproject.org/files/ENCFF504TMU/@@download/ENCFF504TMU.bam mm10 released insufficient read depth for broad peaks control ENCFF979XVT bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQU, ENCFF018NEO 1358156010 ENCODE Processing Pipeline 39e7a300eb6a77c4485955eb77cbe48d https://www.encodeproject.org/files/ENCFF979XVT/@@download/ENCFF979XVT.bam mm10 released insufficient read depth for broad peaks control ENCFF322DCQ bam alignments ENCSR334IOH ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQS, ENCFF018NEO 1477487887 ENCODE Processing Pipeline 9b4292c4db7cc4abec711a7228f6745d https://www.encodeproject.org/files/ENCFF322DCQ/@@download/ENCFF322DCQ.bam mm10 released insufficient read depth for broad peaks control ENCFF044VRO bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDZ, ENCFF018NEO 2051238856 ENCODE Processing Pipeline 63cd0ef9ea743d3209d109dc74fb30b6 https://www.encodeproject.org/files/ENCFF044VRO/@@download/ENCFF044VRO.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF249VUZ bam alignments ENCSR000DHT ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MEB, ENCFF018NEO 3753732772 ENCODE Processing Pipeline afbccfb533111761786f3fa6c9dcd1d3 https://www.encodeproject.org/files/ENCFF249VUZ/@@download/ENCFF249VUZ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF606JUW bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGM, ENCFF018NEO 959408122 ENCODE Processing Pipeline 0d800d06f519fe35f3ffe4ed4eb938ee https://www.encodeproject.org/files/ENCFF606JUW/@@download/ENCFF606JUW.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF882QQS bam alignments ENCSR748BQH ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGJ, ENCFF018NEO 945943545 ENCODE Processing Pipeline da306dd9d0d1258faf96ccc01a8cbb35 https://www.encodeproject.org/files/ENCFF882QQS/@@download/ENCFF882QQS.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF963VRB bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF158LQT 1403110422 ENCODE Processing Pipeline 1a296c215773ef5bf838b70a1b9c21ae https://www.encodeproject.org/files/ENCFF963VRB/@@download/ENCFF963VRB.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF713WNF bam alignments ENCSR344HHI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF826EWA 1570081586 ENCODE Processing Pipeline 8c7a74c646203870b7e6efda71c38ecd https://www.encodeproject.org/files/ENCFF713WNF/@@download/ENCFF713WNF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF780NAD bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQY, ENCFF018NEO 1338466184 ENCODE Processing Pipeline 8f4a6820d39c2aa263f253742d54d642 https://www.encodeproject.org/files/ENCFF780NAD/@@download/ENCFF780NAD.bam mm10 released insufficient read depth for broad peaks control ENCFF260TOA bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ARA, ENCFF018NEO 1936436343 ENCODE Processing Pipeline 549faa595ce3d55bfcd4be742853a2e2 https://www.encodeproject.org/files/ENCFF260TOA/@@download/ENCFF260TOA.bam mm10 released insufficient read depth for broad peaks control ENCFF190RFD bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQY, ENCFF018NEO 1021821580 ENCODE Processing Pipeline 9c36735d80db22dbc8cc444f0a42a9e0 https://www.encodeproject.org/files/ENCFF190RFD/@@download/ENCFF190RFD.bam mm10 released insufficient read depth for broad peaks control ENCFF523XKB bam alignments ENCSR178MLS ChIP-seq UBERON:0002113 kidney tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ARA, ENCFF018NEO 1473116983 ENCODE Processing Pipeline 3739153d2d2552a3807497cdcde73453 https://www.encodeproject.org/files/ENCFF523XKB/@@download/ENCFF523XKB.bam mm10 released insufficient read depth for broad peaks control ENCFF940XYU bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF850EOI 1696430330 ENCODE Processing Pipeline 3e8c02cd9f61f620154c4b1367fbdff9 https://www.encodeproject.org/files/ENCFF940XYU/@@download/ENCFF940XYU.bam mm10 released inconsistent platforms ENCFF363KUX bam alignments ENCSR311VKI ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF836EIX 1860432808 ENCODE Processing Pipeline 13783aaaf1eec47e9039cf0e8b4c68b8 https://www.encodeproject.org/files/ENCFF363KUX/@@download/ENCFF363KUX.bam mm10 released inconsistent platforms ENCFF334XPU bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF678FKI 1305780962 ENCODE Processing Pipeline 3d63c6b5302a15ae9c10607f5400ddec https://www.encodeproject.org/files/ENCFF334XPU/@@download/ENCFF334XPU.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF823ZDR bam alignments ENCSR947QOH ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF349SWN 1363049371 ENCODE Processing Pipeline 1ade40e4b30fb473eae862a949d67a4d https://www.encodeproject.org/files/ENCFF823ZDR/@@download/ENCFF823ZDR.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF820MBE bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIZ, ENCFF018NEO 1292255099 ENCODE Processing Pipeline 9302a5eed971b9b038988efc25ddfdcb https://www.encodeproject.org/files/ENCFF820MBE/@@download/ENCFF820MBE.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF917GUV bam alignments ENCSR972WEN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIX, ENCFF018NEO 1224138750 ENCODE Processing Pipeline cb37a2597f255de8c9aa1581e026b98a https://www.encodeproject.org/files/ENCFF917GUV/@@download/ENCFF917GUV.bam mm10 released low read length, antibody characterized with exemption insufficient read depth, control insufficient read depth ENCFF434TRS bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIB, ENCFF018NEO 1125065456 ENCODE Processing Pipeline 823b62536a00785405f7c53c8acdcf4b https://www.encodeproject.org/files/ENCFF434TRS/@@download/ENCFF434TRS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF024KWU bam alignments ENCSR702JYV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIF, ENCFF018NEO 1180909927 ENCODE Processing Pipeline 64bf0d5582737ac91c5ee2c94d81c8e7 https://www.encodeproject.org/files/ENCFF024KWU/@@download/ENCFF024KWU.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF436KYT bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 1890769372 ENCODE Processing Pipeline 84bea82626b5ab83813c8acd85c8d55c https://www.encodeproject.org/files/ENCFF436KYT/@@download/ENCFF436KYT.bam mm10 released low read length experiment not submitted to GEO ENCFF890GFD bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 1689616186 ENCODE Processing Pipeline f4dc9c3f7ccb262d9f4600499a9ace36 https://www.encodeproject.org/files/ENCFF890GFD/@@download/ENCFF890GFD.bam mm10 released low read length experiment not submitted to GEO ENCFF861JST bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF896DIR 1066996448 ENCODE Processing Pipeline 080329d5b4606c2da472a4e40be3385f https://www.encodeproject.org/files/ENCFF861JST/@@download/ENCFF861JST.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF217XNX bam alignments ENCSR325JLI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF146TDK, ENCFF782SKE 1195580528 ENCODE Processing Pipeline ee7964a0ded79bf5cc0a781f4fd9ec35 https://www.encodeproject.org/files/ENCFF217XNX/@@download/ENCFF217XNX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF371ZUN bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1164189550 ENCODE Processing Pipeline ae5d1b8a2fb2e0f55cd7755d82cd60fd https://www.encodeproject.org/files/ENCFF371ZUN/@@download/ENCFF371ZUN.bam mm10 released low read length, inconsistent target of control experiment ENCFF459CWX bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 892949903 ENCODE Processing Pipeline fa836d267ad4d73feb8309d0ad79438e https://www.encodeproject.org/files/ENCFF459CWX/@@download/ENCFF459CWX.bam mm10 released low read length, inconsistent target of control experiment ENCFF375VYV bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETI, ENCFF018NEO, ENCFF912ODG 473480035 ENCODE Processing Pipeline 5c1e419ce690729939057a8243ee01c4 https://www.encodeproject.org/files/ENCFF375VYV/@@download/ENCFF375VYV.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF965WSU bam alignments ENCSR282OTI ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETM, ENCFF018NEO 796413234 ENCODE Processing Pipeline 7872a4522a54a1793b736811617eeff6 https://www.encodeproject.org/files/ENCFF965WSU/@@download/ENCFF965WSU.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF997CAQ bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFD, ENCFF018NEO 356178722 ENCODE Processing Pipeline 8554703f6d32efcc4504ebe58a077dd7 https://www.encodeproject.org/files/ENCFF997CAQ/@@download/ENCFF997CAQ.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF425ZMW bam alignments ENCSR000CGO ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFJ, ENCFF018NEO 339746674 ENCODE Processing Pipeline efe77cae7fac61de5e24517315abcb45 https://www.encodeproject.org/files/ENCFF425ZMW/@@download/ENCFF425ZMW.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, severe bottlenecking, poor library complexity ENCFF797ITD bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1104924953 ENCODE Processing Pipeline 1716bf24a4baf3e476d0164666199601 https://www.encodeproject.org/files/ENCFF797ITD/@@download/ENCFF797ITD.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF163GGA bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1335940972 ENCODE Processing Pipeline ff3cfea2057b2d1497ef2366b38e2203 https://www.encodeproject.org/files/ENCFF163GGA/@@download/ENCFF163GGA.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF018RET bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF534ZMY 1764799899 ENCODE Processing Pipeline b208087791c241dcba9afae78271200e https://www.encodeproject.org/files/ENCFF018RET/@@download/ENCFF018RET.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF633TTC bam alignments ENCSR868FWZ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF361MHV 1833992714 ENCODE Processing Pipeline d7d54836c8bba1e18357136b44284fa8 https://www.encodeproject.org/files/ENCFF633TTC/@@download/ENCFF633TTC.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF006GSW bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXI, ENCFF018NEO 1009898977 ENCODE Processing Pipeline 8d8224589d30e4ac2125d0bf09a73e9f https://www.encodeproject.org/files/ENCFF006GSW/@@download/ENCFF006GSW.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF704RCP bam alignments ENCSR637CCT ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF045GWQ 593239748 ENCODE Processing Pipeline 910a06c8d21a459bc76d874872c8c3d8 https://www.encodeproject.org/files/ENCFF704RCP/@@download/ENCFF704RCP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF824QGV bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF721FSS 2683991630 ENCODE Processing Pipeline 08271dd557854c73710eeca4da16a349 https://www.encodeproject.org/files/ENCFF824QGV/@@download/ENCFF824QGV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF893CMD bam alignments ENCSR069XHI ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF435NZN 2326508105 ENCODE Processing Pipeline cbe7195b0daa122512a0b879f44b0814 https://www.encodeproject.org/files/ENCFF893CMD/@@download/ENCFF893CMD.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF378EDH bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF851XEK 1647214180 ENCODE Processing Pipeline 9a602bd103c83280f8b1951ed728ea31 https://www.encodeproject.org/files/ENCFF378EDH/@@download/ENCFF378EDH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF483RME bam alignments ENCSR315ZEU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF227UFA 1586012150 ENCODE Processing Pipeline 85e2f2a0b71ac1865f285d4ad890873e https://www.encodeproject.org/files/ENCFF483RME/@@download/ENCFF483RME.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF244KMU bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZRB, ENCFF018NEO 601013663 ENCODE Processing Pipeline 28f62d414d16fbcde5d4e3be6e4d66dc https://www.encodeproject.org/files/ENCFF244KMU/@@download/ENCFF244KMU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF922NBA bam alignments ENCSR058DOA ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZRL, ENCFF018NEO 636095195 ENCODE Processing Pipeline db5dfd38c9b6cd63b109277b39a296bb https://www.encodeproject.org/files/ENCFF922NBA/@@download/ENCFF922NBA.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF918TDQ bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KCF, ENCFF018NEO 296194647 ENCODE Processing Pipeline 1ebfee46ae7aca8f1c86b854956529a9 https://www.encodeproject.org/files/ENCFF918TDQ/@@download/ENCFF918TDQ.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF225WZQ bam alignments ENCSR000CDD ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KCG, ENCFF018NEO 308907604 ENCODE Processing Pipeline 74f617ee0d1fdb6946b5d89d240d737e https://www.encodeproject.org/files/ENCFF225WZQ/@@download/ENCFF225WZQ.bam mm10 released low read length, inconsistent platforms, control low read depth insufficient read depth ENCFF426RVW bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUG, ENCFF018NEO 604463572 ENCODE Processing Pipeline 1a14f00f53182f669bbbc23a8137c635 https://www.encodeproject.org/files/ENCFF426RVW/@@download/ENCFF426RVW.bam mm10 released low read length, low read depth ENCFF876VMW bam alignments ENCSR928CYU ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUD, ENCFF018NEO 709927873 ENCODE Processing Pipeline d48eef293f49c9078296a24b282c3d80 https://www.encodeproject.org/files/ENCFF876VMW/@@download/ENCFF876VMW.bam mm10 released low read length, low read depth ENCFF593JQG bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALA, ENCFF018NEO 730975204 ENCODE Processing Pipeline cee1335055ab1408741bae9c6d09bb33 https://www.encodeproject.org/files/ENCFF593JQG/@@download/ENCFF593JQG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF814JIH bam alignments ENCSR579RZO ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALC, ENCFF018NEO 887523475 ENCODE Processing Pipeline bb3c870064cc5e7cc5d39d0c19d9b24a https://www.encodeproject.org/files/ENCFF814JIH/@@download/ENCFF814JIH.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth ENCFF676OVP bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 483241675 ENCODE Processing Pipeline 5d4b05a603dfa20e0b7fc2c80d0c4600 https://www.encodeproject.org/files/ENCFF676OVP/@@download/ENCFF676OVP.bam mm10 released low read length insufficient read depth ENCFF358NVC bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 440923333 ENCODE Processing Pipeline 455a3990b965d834478436cb375c7125 https://www.encodeproject.org/files/ENCFF358NVC/@@download/ENCFF358NVC.bam mm10 released low read length insufficient read depth ENCFF139PUK bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 914833363 ENCODE Processing Pipeline ff8e5444cd996cb93d449abe19ff9c40 https://www.encodeproject.org/files/ENCFF139PUK/@@download/ENCFF139PUK.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF824KNT bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 367747463 ENCODE Processing Pipeline de52d18700cf4f5ab0232f54128a7151 https://www.encodeproject.org/files/ENCFF824KNT/@@download/ENCFF824KNT.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF600XLT bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF488AGX, ENCFF660RWL 2708176982 ENCODE Processing Pipeline bb087a8b8dccb17beb902e7564171c1c https://www.encodeproject.org/files/ENCFF600XLT/@@download/ENCFF600XLT.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF575ZDW bam alignments ENCSR066WUD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF570AMF, ENCFF836UWU 2995966776 ENCODE Processing Pipeline 1ce0eacc9d9de4b1c65e029f5f29b576 https://www.encodeproject.org/files/ENCFF575ZDW/@@download/ENCFF575ZDW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF918MLI bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 774266929 ENCODE Processing Pipeline 663d15eaf247b3aa9c5f666dd0aa2ca3 https://www.encodeproject.org/files/ENCFF918MLI/@@download/ENCFF918MLI.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF713QES bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 629207786 ENCODE Processing Pipeline abc63885441e89d6fba8d29a843d3a6f https://www.encodeproject.org/files/ENCFF713QES/@@download/ENCFF713QES.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF507MUR bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALX, ENCFF018NEO 594204896 ENCODE Processing Pipeline cf5179b2ef8fb66dfecedc97e96eec4a https://www.encodeproject.org/files/ENCFF507MUR/@@download/ENCFF507MUR.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF775CXO bam alignments ENCSR578RLI ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF216KEB, ENCFF987JVV 733539377 ENCODE Processing Pipeline d96982ce96707d681f15b72264e69a40 https://www.encodeproject.org/files/ENCFF775CXO/@@download/ENCFF775CXO.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates ENCFF503YHJ bam alignments ENCSR227UFB ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 50 ENCFF018NEO, ENCFF876HRO 806993697 ENCODE Processing Pipeline 43dc22eee288c327beb98d68aee02fba https://www.encodeproject.org/files/ENCFF503YHJ/@@download/ENCFF503YHJ.bam mm10 released low read depth ENCFF735XMC bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZVD, ENCFF018NEO 620757190 ENCODE Processing Pipeline 5ec2ae9113042d3db4792ffef7771097 https://www.encodeproject.org/files/ENCFF735XMC/@@download/ENCFF735XMC.bam mm10 released low read length, low read depth ENCFF130PCO bam alignments ENCSR138YZB ChIP-seq UBERON:0001049 neural tube tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUR, ENCFF018NEO 496537331 ENCODE Processing Pipeline a6c0b8123249805a23cd344e8598bd3f https://www.encodeproject.org/files/ENCFF130PCO/@@download/ENCFF130PCO.bam mm10 released low read length, low read depth ENCFF512NUW bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUI, ENCFF018NEO 494136712 ENCODE Processing Pipeline cb55bf8dcd342c3359011437e543b2c2 https://www.encodeproject.org/files/ENCFF512NUW/@@download/ENCFF512NUW.bam mm10 released low read length, low read depth ENCFF377IXU bam alignments ENCSR068AQC ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUJ, ENCFF018NEO 435916622 ENCODE Processing Pipeline 5a0e9f5c3b0d69548b089c5185c4f49f https://www.encodeproject.org/files/ENCFF377IXU/@@download/ENCFF377IXU.bam mm10 released low read length, low read depth ENCFF021TZE bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BVD, ENCFF002BVF, ENCFF018NEO, ENCFF093LOL 1158933431 ENCODE Processing Pipeline 54138d9ebe9b3655eaa468ce7cb823bf https://www.encodeproject.org/files/ENCFF021TZE/@@download/ENCFF021TZE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF964PCP bam alignments ENCSR932BNP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BVH, ENCFF002BVJ, ENCFF018NEO, ENCFF957YVR 1173236553 ENCODE Processing Pipeline 2ee066fb730156c5c5e235605ec53b4d https://www.encodeproject.org/files/ENCFF964PCP/@@download/ENCFF964PCP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF707WFE bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF001LZG, ENCFF018NEO 1475412355 ENCODE Processing Pipeline 4d860d01e2b7b271c97a01f4f3eb648f https://www.encodeproject.org/files/ENCFF707WFE/@@download/ENCFF707WFE.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF821GWN bam alignments ENCSR000DJB ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF001LZE, ENCFF018NEO 1228913503 ENCODE Processing Pipeline f499f6d620afbb6dd8542e223127dd84 https://www.encodeproject.org/files/ENCFF821GWN/@@download/ENCFF821GWN.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF786IOU bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 624554444 ENCODE Processing Pipeline 174917d639368c4625ef5d459ba81277 https://www.encodeproject.org/files/ENCFF786IOU/@@download/ENCFF786IOU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170PTO bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 610372530 ENCODE Processing Pipeline ed21ab15d964b02e675ebde2c1caf9b0 https://www.encodeproject.org/files/ENCFF170PTO/@@download/ENCFF170PTO.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF826NRB bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUQ, ENCFF018NEO 708552078 ENCODE Processing Pipeline 9632085c107900be33c66de2e11e6f9c https://www.encodeproject.org/files/ENCFF826NRB/@@download/ENCFF826NRB.bam mm10 released low read length, low read depth ENCFF894SLJ bam alignments ENCSR654VMK ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUL, ENCFF018NEO 492940729 ENCODE Processing Pipeline 342fd20e002db6bd9881b44dd8c4cd47 https://www.encodeproject.org/files/ENCFF894SLJ/@@download/ENCFF894SLJ.bam mm10 released low read length, low read depth ENCFF031RFH bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF995MZR 1381432055 ENCODE Processing Pipeline aec83f9b6eec407ea573c9bf4d7e10b9 https://www.encodeproject.org/files/ENCFF031RFH/@@download/ENCFF031RFH.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF492LOP bam alignments ENCSR577SDJ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF456KTU, ENCFF939WZI 2094728185 ENCODE Processing Pipeline 5ccfdde3e038c8d9a1d3c91172bbad1c https://www.encodeproject.org/files/ENCFF492LOP/@@download/ENCFF492LOP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF202TYU bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 630006638 ENCODE Processing Pipeline 59fea24ecf173545cad05e19d4a614f3 https://www.encodeproject.org/files/ENCFF202TYU/@@download/ENCFF202TYU.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF174MFL bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 685199691 ENCODE Processing Pipeline a9c0deaa5880b710483fc38dd018c7c1 https://www.encodeproject.org/files/ENCFF174MFL/@@download/ENCFF174MFL.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF631YQS bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUM, ENCFF018NEO, ENCFF825VCS 472209617 ENCODE Processing Pipeline 15af31be16b5b71e508ff5e8f6bd6499 https://www.encodeproject.org/files/ENCFF631YQS/@@download/ENCFF631YQS.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF658BBR bam alignments ENCSR024JAN ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUS, ENCFF018NEO 643497800 ENCODE Processing Pipeline 4f7b29cfb5286acfd9c59f504bff925d https://www.encodeproject.org/files/ENCFF658BBR/@@download/ENCFF658BBR.bam mm10 released mixed read lengths, low read length, low read depth sequencing runs labeled as technical replicates ENCFF960VJP bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KCC, ENCFF018NEO 320596218 ENCODE Processing Pipeline 95687b6a8c81506c1e36850258e9b22e https://www.encodeproject.org/files/ENCFF960VJP/@@download/ENCFF960VJP.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF864GXH bam alignments ENCSR000CGM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K79me2-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KCB, ENCFF018NEO 285096625 ENCODE Processing Pipeline 99694d73ae0f61af104fb89646d88347 https://www.encodeproject.org/files/ENCFF864GXH/@@download/ENCFF864GXH.bam mm10 released mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF175ZLG bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQT, ENCFF002DQU, ENCFF018NEO 1230822388 ENCODE Processing Pipeline 67751feb04965c2e390c00b4ccb4995d https://www.encodeproject.org/files/ENCFF175ZLG/@@download/ENCFF175ZLG.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF746FYC bam alignments ENCSR007XTC ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQP, ENCFF002DQR, ENCFF002DQS, ENCFF018NEO 1518204069 ENCODE Processing Pipeline 8026808660132376e40dca3ccefc0bd4 https://www.encodeproject.org/files/ENCFF746FYC/@@download/ENCFF746FYC.bam mm10 released low read length, control low read depth sequencing runs labeled as technical replicates control insufficient read depth ENCFF561HVM bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF333CMN, ENCFF444LBW 2661159679 ENCODE Processing Pipeline 4342e3381cc83ca4d94457cd197868e8 https://www.encodeproject.org/files/ENCFF561HVM/@@download/ENCFF561HVM.bam mm10 released sequencing runs labeled as technical replicates ENCFF962XXR bam alignments ENCSR359ETU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus Control-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF007ZYG, ENCFF018NEO, ENCFF554GAJ 2750497632 ENCODE Processing Pipeline dc762894d8996c9001e6785930323c07 https://www.encodeproject.org/files/ENCFF962XXR/@@download/ENCFF962XXR.bam mm10 released sequencing runs labeled as technical replicates ENCFF569YRJ bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF531KNS 2172219477 ENCODE Processing Pipeline c1088e76d823d2738d6870048d56abfa https://www.encodeproject.org/files/ENCFF569YRJ/@@download/ENCFF569YRJ.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF212YKE bam alignments ENCSR087PLZ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF833RGB 2058115698 ENCODE Processing Pipeline 90af360d186a9568e943c4933af54b10 https://www.encodeproject.org/files/ENCFF212YKE/@@download/ENCFF212YKE.bam mm10 released mild to moderate bottlenecking, moderate library complexity, inconsistent platforms ENCFF552RBV bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KBH, ENCFF018NEO 515452229 ENCODE Processing Pipeline 86d1cc14d0ae3356177353ba1f586307 https://www.encodeproject.org/files/ENCFF552RBV/@@download/ENCFF552RBV.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF856BNE bam alignments ENCSR000CGL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KBL, ENCFF018NEO 388715974 ENCODE Processing Pipeline 882805e753066f6e89bca55af0a44c90 https://www.encodeproject.org/files/ENCFF856BNE/@@download/ENCFF856BNE.bam mm10 released mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF607BJN bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOQ, ENCFF018NEO, ENCFF334FTS 466478232 ENCODE Processing Pipeline b421ae1963a1caeadca76dc451bf5b2f https://www.encodeproject.org/files/ENCFF607BJN/@@download/ENCFF607BJN.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF049OBF bam alignments ENCSR293ORS ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOS, ENCFF018NEO 775348629 ENCODE Processing Pipeline 1a23824b2983493b6d8f7b20f4685a6a https://www.encodeproject.org/files/ENCFF049OBF/@@download/ENCFF049OBF.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity sequencing runs labeled as technical replicates ENCFF980DPR bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 2 36 ENCFF002DTH, ENCFF002DTJ, ENCFF018NEO, ENCFF412LWV 1121617620 ENCODE Processing Pipeline 5e95b99fe68ff6be0c460e341f6730f5 https://www.encodeproject.org/files/ENCFF980DPR/@@download/ENCFF980DPR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF124DZZ bam alignments ENCSR871YCT ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-07-07 ENCODE 1 36 ENCFF002DTF, ENCFF002DTG, ENCFF018NEO, ENCFF044YXS 1036030430 ENCODE Processing Pipeline 0d3300b5fee722d6bb403dad7f447b77 https://www.encodeproject.org/files/ENCFF124DZZ/@@download/ENCFF124DZZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF174ZKG bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFB, ENCFF018NEO 851123534 ENCODE Processing Pipeline 6d8f80eac6b977704d4f285224f7afa0 https://www.encodeproject.org/files/ENCFF174ZKG/@@download/ENCFF174ZKG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF104MNP bam alignments ENCSR254AHA ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFA, ENCFF018NEO 776595733 ENCODE Processing Pipeline 364d306857625c417f7acbfaf300cc65 https://www.encodeproject.org/files/ENCFF104MNP/@@download/ENCFF104MNP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF738EUE bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001KOV, ENCFF018NEO 401102631 ENCODE Processing Pipeline e1a6ab7b831ac28b59410be9194fae79 https://www.encodeproject.org/files/ENCFF738EUE/@@download/ENCFF738EUE.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF493MBH bam alignments ENCSR000CAY ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001KOQ, ENCFF018NEO 151970389 ENCODE Processing Pipeline f96c679a16e441358d25ab34e52fd237 https://www.encodeproject.org/files/ENCFF493MBH/@@download/ENCFF493MBH.bam mm10 released low read length insufficient read depth extremely low read depth ENCFF783RDN bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF524JOX 3017023047 ENCODE Processing Pipeline e0b6643c5bd0ac6c1a4a1dce65789703 https://www.encodeproject.org/files/ENCFF783RDN/@@download/ENCFF783RDN.bam mm10 released inconsistent platforms ENCFF141HFI bam alignments ENCSR133EGP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF632UDQ 2923722523 ENCODE Processing Pipeline 1f4f3ca938bc8b5259c9ca41184e3505 https://www.encodeproject.org/files/ENCFF141HFI/@@download/ENCFF141HFI.bam mm10 released inconsistent platforms ENCFF549GXA bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 2 48 ENCFF001ZYX, ENCFF018NEO 2019310409 ENCODE Processing Pipeline d985576890e50ebae482a8de5ad26cc0 https://www.encodeproject.org/files/ENCFF549GXA/@@download/ENCFF549GXA.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF717OFJ bam alignments ENCSR734EYQ ChIP-seq UBERON:0002107 liver tissue Mus musculus Control-mouse DNA see document see document False 2014-03-11 ENCODE 1 48 ENCFF001ZYW, ENCFF018NEO 2276545938 ENCODE Processing Pipeline b10bada194172353504d29170b47175a https://www.encodeproject.org/files/ENCFF717OFJ/@@download/ENCFF717OFJ.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control, biological replicates with identical biosample ENCFF774VDU bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF174MKE, ENCFF275RQQ 2405288639 ENCODE Processing Pipeline 8f351d2d4288caa874acddc99f728328 https://www.encodeproject.org/files/ENCFF774VDU/@@download/ENCFF774VDU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF972GVQ bam alignments ENCSR889MYY ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF350EJC 1531857782 ENCODE Processing Pipeline 9e3921b9a84153e49a92f9047dc961fa https://www.encodeproject.org/files/ENCFF972GVQ/@@download/ENCFF972GVQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF442VUL bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGX, ENCFF018NEO 425069374 ENCODE Processing Pipeline 82b69b0d27b0dc1851badc16926bc17b https://www.encodeproject.org/files/ENCFF442VUL/@@download/ENCFF442VUL.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF443VMQ bam alignments ENCSR000CDF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGV, ENCFF018NEO 402512773 ENCODE Processing Pipeline 752f2c11bdb681e346b779db25ca764f https://www.encodeproject.org/files/ENCFF443VMQ/@@download/ENCFF443VMQ.bam mm10 released low read length, inconsistent platforms, control low read depth, low read depth ENCFF482ICX bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJG, ENCFF018NEO, ENCFF455NNK 994159341 ENCODE Processing Pipeline 229f8a0c256a8990fd305c14e2127cfa https://www.encodeproject.org/files/ENCFF482ICX/@@download/ENCFF482ICX.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF111ANM bam alignments ENCSR417TXZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJL, ENCFF018NEO 1207777160 ENCODE Processing Pipeline e4a67e075ac1a78c9d3380410c98573e https://www.encodeproject.org/files/ENCFF111ANM/@@download/ENCFF111ANM.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF828ITY bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DTM, ENCFF002DTO, ENCFF018NEO 1543799478 ENCODE Processing Pipeline 8ea68d0d4b22b9d1de609717cf6a4be1 https://www.encodeproject.org/files/ENCFF828ITY/@@download/ENCFF828ITY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF670JTV bam alignments ENCSR894JAS ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DTN, ENCFF002DTP, ENCFF018NEO 1412643599 ENCODE Processing Pipeline 3b87103b42770c81ccae35d8f5a55a7c https://www.encodeproject.org/files/ENCFF670JTV/@@download/ENCFF670JTV.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF206KOY bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 560173312 ENCODE Processing Pipeline 06d591b56d0b454534d7568dd308ea33 https://www.encodeproject.org/files/ENCFF206KOY/@@download/ENCFF206KOY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF185QAZ bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 448496441 ENCODE Processing Pipeline afd49e4e479241ca8855d9c0c667f951 https://www.encodeproject.org/files/ENCFF185QAZ/@@download/ENCFF185QAZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF851BHF bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGF, ENCFF018NEO 482105890 ENCODE Processing Pipeline 448f6f327d5d7c1d409a57c2809cece0 https://www.encodeproject.org/files/ENCFF851BHF/@@download/ENCFF851BHF.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF923LLN bam alignments ENCSR000CDL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGI, ENCFF018NEO 743976652 ENCODE Processing Pipeline afb0b05b0f8cbcfe36da31732d929dde https://www.encodeproject.org/files/ENCFF923LLN/@@download/ENCFF923LLN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF550QPN bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUP, ENCFF018NEO 1049077286 ENCODE Processing Pipeline f1beff60da3ae9c959d0d0245babb760 https://www.encodeproject.org/files/ENCFF550QPN/@@download/ENCFF550QPN.bam mm10 released low read length ENCFF674KMB bam alignments ENCSR912IXU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUM, ENCFF018NEO 1334122632 ENCODE Processing Pipeline 7b70dddabe7748f96759eac76effe293 https://www.encodeproject.org/files/ENCFF674KMB/@@download/ENCFF674KMB.bam mm10 released low read length ENCFF284EYB bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXI, ENCFF018NEO 1028093575 ENCODE Processing Pipeline f596e6eb07fee3f2bb0781289fbee22c https://www.encodeproject.org/files/ENCFF284EYB/@@download/ENCFF284EYB.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF261QNV bam alignments ENCSR000CFU ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXF, ENCFF018NEO 1135004358 ENCODE Processing Pipeline b7c339e3d35d29905969a98e5aeaf3d5 https://www.encodeproject.org/files/ENCFF261QNV/@@download/ENCFF261QNV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF052YOZ bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 743891732 ENCODE Processing Pipeline 40fc1e0dcdbef80a72eceff5e43d617a https://www.encodeproject.org/files/ENCFF052YOZ/@@download/ENCFF052YOZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF689KZB bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1181345622 ENCODE Processing Pipeline dd4dd81cad60f7ea5c86d10ad81370cc https://www.encodeproject.org/files/ENCFF689KZB/@@download/ENCFF689KZB.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF724HAL bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 582059911 ENCODE Processing Pipeline 93f6e20ba4bc06b5964cbe2e00735f8f https://www.encodeproject.org/files/ENCFF724HAL/@@download/ENCFF724HAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF329AUN bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 551292962 ENCODE Processing Pipeline 0b70041bc9599b608f822fa56de8e527 https://www.encodeproject.org/files/ENCFF329AUN/@@download/ENCFF329AUN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF057WPD bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF033CCZ, ENCFF424CWV, ENCFF686NHY 2956284051 ENCODE Processing Pipeline 2dca7424489dde3572bf5de8dae4e69b https://www.encodeproject.org/files/ENCFF057WPD/@@download/ENCFF057WPD.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF146GCW bam alignments ENCSR487RAU ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF326NFX, ENCFF876VRJ 2952921892 ENCODE Processing Pipeline 528850ccf8d49a7fabde68b899e53503 https://www.encodeproject.org/files/ENCFF146GCW/@@download/ENCFF146GCW.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF211LLN bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGB, ENCFF018NEO 1013830426 ENCODE Processing Pipeline ecfdaababa0fb8cb76d35b03ead92cca https://www.encodeproject.org/files/ENCFF211LLN/@@download/ENCFF211LLN.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF498MCD bam alignments ENCSR346FJG ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGI, ENCFF018NEO 1217943878 ENCODE Processing Pipeline 3582787043e08d82b02cf21339467cf4 https://www.encodeproject.org/files/ENCFF498MCD/@@download/ENCFF498MCD.bam mm10 released mild to moderate bottlenecking, control low read depth ENCFF448CIM bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIE, ENCFF018NEO 839633688 ENCODE Processing Pipeline 0eaf310cc5f8e1efaeb2d647e3c4617a https://www.encodeproject.org/files/ENCFF448CIM/@@download/ENCFF448CIM.bam mm10 released control low read depth insufficient read depth ENCFF499CUA bam alignments ENCSR108TWE ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHY, ENCFF018NEO 1003305833 ENCODE Processing Pipeline 9dc4234297c0e3032d16743c6dcf1b5e https://www.encodeproject.org/files/ENCFF499CUA/@@download/ENCFF499CUA.bam mm10 released control low read depth insufficient read depth ENCFF584KVI bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOA, ENCFF018NEO 1120329433 ENCODE Processing Pipeline 8e9db671162f3659d1793afa0d9293e1 https://www.encodeproject.org/files/ENCFF584KVI/@@download/ENCFF584KVI.bam mm10 released low read length ENCFF353TKR bam alignments ENCSR260OUP ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOC, ENCFF018NEO 1163542890 ENCODE Processing Pipeline 764814a1597e7a0635689b250829233a https://www.encodeproject.org/files/ENCFF353TKR/@@download/ENCFF353TKR.bam mm10 released low read length ENCFF574SPR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 986212519 ENCODE Processing Pipeline fcc8d750a649e2bdcf3324c117bc5f65 https://www.encodeproject.org/files/ENCFF574SPR/@@download/ENCFF574SPR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504LSR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1063146494 ENCODE Processing Pipeline 1746eff7aba0cda39cdf462da537a0f0 https://www.encodeproject.org/files/ENCFF504LSR/@@download/ENCFF504LSR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF912DOB bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DQG, ENCFF002DQH, ENCFF002DQI, ENCFF018NEO 1120052922 ENCODE Processing Pipeline 2a25eac40c6670eb857fedc09a1ec11f https://www.encodeproject.org/files/ENCFF912DOB/@@download/ENCFF912DOB.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF321LZQ bam alignments ENCSR948VPV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DQF, ENCFF002DQL, ENCFF018NEO 1021643367 ENCODE Processing Pipeline ba054c3b54c4e23f0f054680938aed06 https://www.encodeproject.org/files/ENCFF321LZQ/@@download/ENCFF321LZQ.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF984ITL bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEL, ENCFF018NEO 822698757 ENCODE Processing Pipeline d0e4f50e2f8fcd2ca6087a53f43299b3 https://www.encodeproject.org/files/ENCFF984ITL/@@download/ENCFF984ITL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF401QXS bam alignments ENCSR481SGM ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF018NEO, ENCFF153OKY 644887569 ENCODE Processing Pipeline 5b5f0ea41c189f7c4592219b2e45be45 https://www.encodeproject.org/files/ENCFF401QXS/@@download/ENCFF401QXS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF292MTG bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 551306438 ENCODE Processing Pipeline 633b2fe046f4700ae7f2a3d7226c93e9 https://www.encodeproject.org/files/ENCFF292MTG/@@download/ENCFF292MTG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF202HIS bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 729223411 ENCODE Processing Pipeline 418117eae79323fda1ba05fd232c4b99 https://www.encodeproject.org/files/ENCFF202HIS/@@download/ENCFF202HIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF831JKI bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF594YET 1673198881 ENCODE Processing Pipeline 7d4b79c329c9f0e807346a49ea2955e5 https://www.encodeproject.org/files/ENCFF831JKI/@@download/ENCFF831JKI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF650CDV bam alignments ENCSR711SVB ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF107WXS 2051393783 ENCODE Processing Pipeline 9871990296aee5c12dc2a73b179e7f73 https://www.encodeproject.org/files/ENCFF650CDV/@@download/ENCFF650CDV.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF024QAB bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXX, ENCFF018NEO 338051234 ENCODE Processing Pipeline c16862ac736a756b492bc12b2ac0d6a5 https://www.encodeproject.org/files/ENCFF024QAB/@@download/ENCFF024QAB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF795CCA bam alignments ENCSR000CCJ ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXW, ENCFF018NEO 293126714 ENCODE Processing Pipeline cd63830ba89e9f5bfe3fab6dfb815ff9 https://www.encodeproject.org/files/ENCFF795CCA/@@download/ENCFF795CCA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth insufficient read depth, control insufficient read depth ENCFF137QSX bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRE, ENCFF018NEO 55417723 ENCODE Processing Pipeline f3528de15ec5be78e7e549d22878b10b https://www.encodeproject.org/files/ENCFF137QSX/@@download/ENCFF137QSX.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF409DKD bam alignments ENCSR000CBY ChIP-seq UBERON:0002106 spleen tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LQY, ENCFF018NEO 356592575 ENCODE Processing Pipeline 9d0fe55ecb2328ebcb7afb0034933019 https://www.encodeproject.org/files/ENCFF409DKD/@@download/ENCFF409DKD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms insufficient read depth, insufficient read length extremely low read depth ENCFF251CDJ bam alignments ENCSR718KRA ChIP-seq UBERON:0002048 lung tissue Mus musculus Control-mouse DNA False 2016-01-29 ENCODE 1 50 ENCFF018NEO, ENCFF285EZB 1249232106 ENCODE Processing Pipeline 6106dea486dce9dc87249ca785ca47fd https://www.encodeproject.org/files/ENCFF251CDJ/@@download/ENCFF251CDJ.bam mm10 released insufficient read depth for broad peaks control ENCFF610AAL bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KLX, ENCFF018NEO 541721412 ENCODE Processing Pipeline 4c2a11e261db4471abbfaeefc8d406a8 https://www.encodeproject.org/files/ENCFF610AAL/@@download/ENCFF610AAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF988ADO bam alignments ENCSR000CEQ ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMB, ENCFF018NEO 599069381 ENCODE Processing Pipeline db7b7db7a942dcd7c0f80221e0906ffa https://www.encodeproject.org/files/ENCFF988ADO/@@download/ENCFF988ADO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF991YKF bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 201792282 ENCODE Processing Pipeline 83a881f355236d32ffd74101e2fb2fcb https://www.encodeproject.org/files/ENCFF991YKF/@@download/ENCFF991YKF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF385VIZ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 711917724 ENCODE Processing Pipeline 97516ef8397618e4604908cc73ac5a62 https://www.encodeproject.org/files/ENCFF385VIZ/@@download/ENCFF385VIZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF835GIQ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LQH, ENCFF018NEO 145463677 ENCODE Processing Pipeline 82af3942a86f7569f5580282181702e3 https://www.encodeproject.org/files/ENCFF835GIQ/@@download/ENCFF835GIQ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF023ESZ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 934355228 ENCODE Processing Pipeline 81837bcd74b867e1eadb35adde0efa69 https://www.encodeproject.org/files/ENCFF023ESZ/@@download/ENCFF023ESZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF413VXU bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALU, ENCFF018NEO 868131973 ENCODE Processing Pipeline 97b3f3d1480f8e6bcc19734f74c0c2df https://www.encodeproject.org/files/ENCFF413VXU/@@download/ENCFF413VXU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF018WHT bam alignments ENCSR516TYD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALR, ENCFF018NEO 1259679709 ENCODE Processing Pipeline f429c5788f71285decb2f8ca49c71e15 https://www.encodeproject.org/files/ENCFF018WHT/@@download/ENCFF018WHT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF378ELV bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUA, ENCFF018NEO, ENCFF874XRD 1156600962 ENCODE Processing Pipeline ab4f7b5b1c153da398cff6eac9267f90 https://www.encodeproject.org/files/ENCFF378ELV/@@download/ENCFF378ELV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF483GFV bam alignments ENCSR240OUM ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTV, ENCFF018NEO, ENCFF779IWJ 1205209839 ENCODE Processing Pipeline 0a186519daba8eef9227aee94c351613 https://www.encodeproject.org/files/ENCFF483GFV/@@download/ENCFF483GFV.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF264DHI bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESC, ENCFF018NEO, ENCFF996GTX 986193185 ENCODE Processing Pipeline ca566d90fdcb10f26acbf665baf8901e https://www.encodeproject.org/files/ENCFF264DHI/@@download/ENCFF264DHI.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF258THY bam alignments ENCSR781ORQ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ERZ, ENCFF018NEO, ENCFF402NFB 1022144842 ENCODE Processing Pipeline b2e869059fb793ef540debb39b920a50 https://www.encodeproject.org/files/ENCFF258THY/@@download/ENCFF258THY.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF365VOZ bam alignments ENCSR890SJI ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-01-14 ENCODE 1 50 ENCFF018NEO, ENCFF798MRO 920901870 ENCODE Processing Pipeline 494e210b80abd851820efadb5c9db603 https://www.encodeproject.org/files/ENCFF365VOZ/@@download/ENCFF365VOZ.bam mm10 released insufficient read depth for broad peaks control ENCFF718KJC bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUO, ENCFF018NEO 692026695 ENCODE Processing Pipeline 84b1be7a7152e8f27d6f950fdfbc40c3 https://www.encodeproject.org/files/ENCFF718KJC/@@download/ENCFF718KJC.bam mm10 released low read length, control low read depth, low read depth ENCFF283VWT bam alignments ENCSR447DOF ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUK, ENCFF018NEO 630789632 ENCODE Processing Pipeline 4ab23969b5e9db719413db9f7c21baf7 https://www.encodeproject.org/files/ENCFF283VWT/@@download/ENCFF283VWT.bam mm10 released low read length, control low read depth, low read depth ENCFF995XOU bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXO, ENCFF018NEO 606089474 ENCODE Processing Pipeline 0298e4fd869982f31a73cd10b6c80ca6 https://www.encodeproject.org/files/ENCFF995XOU/@@download/ENCFF995XOU.bam mm10 released low read length, low read depth ENCFF903NWQ bam alignments ENCSR752KDM ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF550AJM 453081246 ENCODE Processing Pipeline a29c7951d73ce1e28fb8e637a2f42eef https://www.encodeproject.org/files/ENCFF903NWQ/@@download/ENCFF903NWQ.bam mm10 released low read length, low read depth ENCFF631VBQ bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BXT, ENCFF018NEO 1079083853 ENCODE Processing Pipeline 12fc1e31f6c0e14303350e677f8da221 https://www.encodeproject.org/files/ENCFF631VBQ/@@download/ENCFF631VBQ.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF568KLX bam alignments ENCSR635JIC ChIP-seq UBERON:0000160 intestine tissue Mus musculus Control-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BXR, ENCFF018NEO 932838089 ENCODE Processing Pipeline 50a8b56679d6ca955992499b9ad1af93 https://www.encodeproject.org/files/ENCFF568KLX/@@download/ENCFF568KLX.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF181MQO bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1126157125 ENCODE Processing Pipeline e5ebad477c6748970909ceca1e030d6b https://www.encodeproject.org/files/ENCFF181MQO/@@download/ENCFF181MQO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF033GTE bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 3556656968 ENCODE Processing Pipeline 43bf54aaf8a6fb50818cec92c04546df https://www.encodeproject.org/files/ENCFF033GTE/@@download/ENCFF033GTE.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF416UQK bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002APW, ENCFF018NEO 1653374276 ENCODE Processing Pipeline 3ed0f34ac34f9f4b5539f3cff15a0cd4 https://www.encodeproject.org/files/ENCFF416UQK/@@download/ENCFF416UQK.bam mm10 released insufficient read depth for broad peaks control ENCFF271IBK bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APZ, ENCFF018NEO 1698158186 ENCODE Processing Pipeline 08ff47e5ca3ae1ac912316fb0cc09b34 https://www.encodeproject.org/files/ENCFF271IBK/@@download/ENCFF271IBK.bam mm10 released insufficient read depth for broad peaks control ENCFF963FIQ bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002APZ, ENCFF018NEO 1285158067 ENCODE Processing Pipeline bcd0cee70a6f11c82a7bcc0031c7669e https://www.encodeproject.org/files/ENCFF963FIQ/@@download/ENCFF963FIQ.bam mm10 released insufficient read depth for broad peaks control ENCFF504TWB bam alignments ENCSR896PWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002APW, ENCFF018NEO 1250485614 ENCODE Processing Pipeline 659265e0421c5199ec399d2225c3cf7a https://www.encodeproject.org/files/ENCFF504TWB/@@download/ENCFF504TWB.bam mm10 released insufficient read depth for broad peaks control ENCFF293JBU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 163556066 ENCODE Processing Pipeline 8fb31befa0c23d19c7365bb89c34b322 https://www.encodeproject.org/files/ENCFF293JBU/@@download/ENCFF293JBU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF129EIU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 435974478 ENCODE Processing Pipeline 3de61622b63827f88f2ea2a60a2860bf https://www.encodeproject.org/files/ENCFF129EIU/@@download/ENCFF129EIU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF519PSU bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 664293173 ENCODE Processing Pipeline a8835cbd7ee728bf48c5a1a6577973cd https://www.encodeproject.org/files/ENCFF519PSU/@@download/ENCFF519PSU.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786RTQ bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 772677950 ENCODE Processing Pipeline 36232cfe11097e844d76e0eb563c7bc8 https://www.encodeproject.org/files/ENCFF786RTQ/@@download/ENCFF786RTQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF242LAJ bam alignments ENCSR000DGX ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQO, ENCFF018NEO 1272805430 ENCODE Processing Pipeline 9d9071d9c436caff72f6a81cc8ce5bc8 https://www.encodeproject.org/files/ENCFF242LAJ/@@download/ENCFF242LAJ.bam mm10 released low read length, inconsistent platforms ENCFF254XUS bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMV, ENCFF018NEO 568490076 ENCODE Processing Pipeline 82a6a6cebec94f762fb314b1b12633bb https://www.encodeproject.org/files/ENCFF254XUS/@@download/ENCFF254XUS.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF803QFK bam alignments ENCSR000CEN ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMW, ENCFF018NEO 873777060 ENCODE Processing Pipeline 5f7a9f5ef1db3fabfa0e9fcd764377dd https://www.encodeproject.org/files/ENCFF803QFK/@@download/ENCFF803QFK.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF588ALD bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHW, ENCFF018NEO 1061213535 ENCODE Processing Pipeline a09748b118422df941c44fa448329e27 https://www.encodeproject.org/files/ENCFF588ALD/@@download/ENCFF588ALD.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF273SIC bam alignments ENCSR953KTY ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHV, ENCFF018NEO 928657512 ENCODE Processing Pipeline 3c2bc8c0cec5c0f66e1e536b6fcc731f https://www.encodeproject.org/files/ENCFF273SIC/@@download/ENCFF273SIC.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF499OEU bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 1361538084 ENCODE Processing Pipeline 8b81e8e11912bb703fbade9817beee30 https://www.encodeproject.org/files/ENCFF499OEU/@@download/ENCFF499OEU.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF464OJW bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 1485166553 ENCODE Processing Pipeline 610792b19b7adcda3a97a95da9dbc80b https://www.encodeproject.org/files/ENCFF464OJW/@@download/ENCFF464OJW.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF938QJY bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHG, ENCFF018NEO, ENCFF675CSU 1041247398 ENCODE Processing Pipeline b866819f019c8024e1ae04ffa40b9f3f https://www.encodeproject.org/files/ENCFF938QJY/@@download/ENCFF938QJY.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF696DFD bam alignments ENCSR973UGS ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHA, ENCFF018NEO, ENCFF254PMM 1144559200 ENCODE Processing Pipeline 41b045c335ab938d814ea85cb0c99aa0 https://www.encodeproject.org/files/ENCFF696DFD/@@download/ENCFF696DFD.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF313WTS bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 545405032 ENCODE Processing Pipeline 7028bc3ea4ddbb1877e69e54743170be https://www.encodeproject.org/files/ENCFF313WTS/@@download/ENCFF313WTS.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF328JKM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 650937340 ENCODE Processing Pipeline 87c542ece54f9c525e8d3ef88564f6c4 https://www.encodeproject.org/files/ENCFF328JKM/@@download/ENCFF328JKM.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF731WNW bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001JXC, ENCFF018NEO 345004857 ENCODE Processing Pipeline 5528b4a9ed22460114a6d3e3673ccdca https://www.encodeproject.org/files/ENCFF731WNW/@@download/ENCFF731WNW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF265FFL bam alignments ENCSR000CFX ChIP-seq NTR:0000741 splenic B cell primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001JXE, ENCFF018NEO 388310778 ENCODE Processing Pipeline 992bc9aa61a5927b64a451ee35f66604 https://www.encodeproject.org/files/ENCFF265FFL/@@download/ENCFF265FFL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths NTR biosample insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF520QES bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002DRI, ENCFF002DRJ, ENCFF002DRL, ENCFF018NEO 1067938390 ENCODE Processing Pipeline b507588ded7bf4fb1f04838242ea7a60 https://www.encodeproject.org/files/ENCFF520QES/@@download/ENCFF520QES.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF888BTM bam alignments ENCSR333QJO ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002DRO, ENCFF002DRP, ENCFF002DRS, ENCFF018NEO 1260130260 ENCODE Processing Pipeline 9eb6b9862a6505480fb6ba7d38c0afd8 https://www.encodeproject.org/files/ENCFF888BTM/@@download/ENCFF888BTM.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF659KMV bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFO, ENCFF018NEO 1087374061 ENCODE Processing Pipeline 4da7bc2e7c5949451d45c46670b19554 https://www.encodeproject.org/files/ENCFF659KMV/@@download/ENCFF659KMV.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF441FKM bam alignments ENCSR675HDX ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFQ, ENCFF018NEO 1448510109 ENCODE Processing Pipeline 64a1b8375e63a9343e14842a46c70e2b https://www.encodeproject.org/files/ENCFF441FKM/@@download/ENCFF441FKM.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF883VZS bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF137FPP 835866745 ENCODE Processing Pipeline bae014600e494fa87a4be2a32363fbc5 https://www.encodeproject.org/files/ENCFF883VZS/@@download/ENCFF883VZS.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF225PLO bam alignments ENCSR864OWV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF485NUU 1078203448 ENCODE Processing Pipeline c71bc0688597cbc0e6da3d9c57f8dfcb https://www.encodeproject.org/files/ENCFF225PLO/@@download/ENCFF225PLO.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths insufficient read depth, control insufficient read depth ENCFF416EHB bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKA, ENCFF018NEO 885254794 ENCODE Processing Pipeline e5395179126c927ab13b85a0d2aed839 https://www.encodeproject.org/files/ENCFF416EHB/@@download/ENCFF416EHB.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF120IBZ bam alignments ENCSR617VBE ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKF, ENCFF018NEO 1491924284 ENCODE Processing Pipeline 7dd29ea4c8d750d0918b51557c88a45e https://www.encodeproject.org/files/ENCFF120IBZ/@@download/ENCFF120IBZ.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths insufficient read depth ENCFF080NOM bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOW, ENCFF018NEO 1199548479 ENCODE Processing Pipeline 7e08adc5f6ee92dadd98fb285b54ffad https://www.encodeproject.org/files/ENCFF080NOM/@@download/ENCFF080NOM.bam mm10 released mild to moderate bottlenecking ENCFF879GPS bam alignments ENCSR369RBO ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AOY, ENCFF018NEO 1259924645 ENCODE Processing Pipeline b4e1c9cab4d238d35a38b01ef5032030 https://www.encodeproject.org/files/ENCFF879GPS/@@download/ENCFF879GPS.bam mm10 released mild to moderate bottlenecking ENCFF176BPZ bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KHA, ENCFF018NEO 422608806 ENCODE Processing Pipeline 0829e84b7bd0a4f3a321c91a3521db5d https://www.encodeproject.org/files/ENCFF176BPZ/@@download/ENCFF176BPZ.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF100LKR bam alignments ENCSR000CDK ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KHG, ENCFF018NEO 394502249 ENCODE Processing Pipeline 7d823e1d72cfef24cc67919f3f0dbb32 https://www.encodeproject.org/files/ENCFF100LKR/@@download/ENCFF100LKR.bam mm10 released low read length, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF788UXL bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESJ, ENCFF018NEO, ENCFF573JQF 1376548482 ENCODE Processing Pipeline ba16abc424de4332bb862f73a8dc7bfb https://www.encodeproject.org/files/ENCFF788UXL/@@download/ENCFF788UXL.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF079QHR bam alignments ENCSR758FWH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESH, ENCFF018NEO, ENCFF870AMY 1496518177 ENCODE Processing Pipeline 553fd6612f35d8b8fa7b9dacb68c4163 https://www.encodeproject.org/files/ENCFF079QHR/@@download/ENCFF079QHR.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF414ERP bam alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001JZZ, ENCFF018NEO 462759042 ENCODE Processing Pipeline 9f3b37ba2ac56acbf658750485626328 https://www.encodeproject.org/files/ENCFF414ERP/@@download/ENCFF414ERP.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF693CWR bam alignments ENCSR000CAL ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001JZY, ENCFF018NEO 626891152 ENCODE Processing Pipeline 1caaf73c737bb5c46028bc45ec7cba92 https://www.encodeproject.org/files/ENCFF693CWR/@@download/ENCFF693CWR.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF148MFU bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETV, ENCFF018NEO 1166188485 ENCODE Processing Pipeline 6c5738e0f4d1ccd29198bd717a25d786 https://www.encodeproject.org/files/ENCFF148MFU/@@download/ENCFF148MFU.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF483SIL bam alignments ENCSR569DBO ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETW, ENCFF018NEO 1161838354 ENCODE Processing Pipeline 810bca8b0806e984de098c6388d0331a https://www.encodeproject.org/files/ENCFF483SIL/@@download/ENCFF483SIL.bam mm10 released mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF245COH bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AKE, ENCFF018NEO, ENCFF507KWH 1693911308 ENCODE Processing Pipeline 4c3e923b206e85b12a780f07cd8b735f https://www.encodeproject.org/files/ENCFF245COH/@@download/ENCFF245COH.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF372BXH bam alignments ENCSR308GFM ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AKH, ENCFF018NEO 1803403747 ENCODE Processing Pipeline 16eec20abc57c06768178aded29a3432 https://www.encodeproject.org/files/ENCFF372BXH/@@download/ENCFF372BXH.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption sequencing runs labeled as technical replicates insufficient read depth ENCFF026GAM bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFI, ENCFF018NEO 842914073 ENCODE Processing Pipeline 889093535ed806026633e5547b28979e https://www.encodeproject.org/files/ENCFF026GAM/@@download/ENCFF026GAM.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF410SCI bam alignments ENCSR452WYC ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFF, ENCFF018NEO 1044985544 ENCODE Processing Pipeline 7f0a9d2e32e448574b688875f1f43c41 https://www.encodeproject.org/files/ENCFF410SCI/@@download/ENCFF410SCI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF876SAR bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 36 ENCFF002DRH, ENCFF018NEO 1022209981 ENCODE Processing Pipeline 98b5dbdd0b6122af95d91f498bd54f5f https://www.encodeproject.org/files/ENCFF876SAR/@@download/ENCFF876SAR.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF709VTI bam alignments ENCSR405TGI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 36 ENCFF002DRK, ENCFF002DRM, ENCFF018NEO 1327471116 ENCODE Processing Pipeline 4575f8d849b5b2abd92ff9541906da09 https://www.encodeproject.org/files/ENCFF709VTI/@@download/ENCFF709VTI.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF186UID bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JYY, ENCFF018NEO 361828436 ENCODE Processing Pipeline 7cb7253510be13fb9a781ac593413b0f https://www.encodeproject.org/files/ENCFF186UID/@@download/ENCFF186UID.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF305WJI bam alignments ENCSR000CFF ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JYS, ENCFF018NEO 283375498 ENCODE Processing Pipeline 5d970a1c326b28f84ba003dd97814733 https://www.encodeproject.org/files/ENCFF305WJI/@@download/ENCFF305WJI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF993AWK bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 815286351 ENCODE Processing Pipeline 970892e3a06b6d25295289e3ee7c4cf3 https://www.encodeproject.org/files/ENCFF993AWK/@@download/ENCFF993AWK.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF329RLT bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 942812396 ENCODE Processing Pipeline 2f4ce88ee59d3c9c6549bbacb85980c8 https://www.encodeproject.org/files/ENCFF329RLT/@@download/ENCFF329RLT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF635UWO bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF018NEO, ENCFF613JON 978392822 ENCODE Processing Pipeline cb2b0071ce311c1a5605eff1a4abb7ba https://www.encodeproject.org/files/ENCFF635UWO/@@download/ENCFF635UWO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF731DGD bam alignments ENCSR046SWI ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF387CUQ 1111274927 ENCODE Processing Pipeline d2eb3b707cc4fb14fefc2d073b623a44 https://www.encodeproject.org/files/ENCFF731DGD/@@download/ENCFF731DGD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF117UNU bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AJZ, ENCFF018NEO 1239529029 ENCODE Processing Pipeline 154a74ac6037cf908222eaf3b18bc6bd https://www.encodeproject.org/files/ENCFF117UNU/@@download/ENCFF117UNU.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF662ZCU bam alignments ENCSR465PLB ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AJY, ENCFF018NEO 1272571918 ENCODE Processing Pipeline 3d8ee567b8b5c3bda9528045807341cb https://www.encodeproject.org/files/ENCFF662ZCU/@@download/ENCFF662ZCU.bam mm10 released antibody characterized with exemption insufficient read depth ENCFF549PWG bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEP, ENCFF018NEO 758676837 ENCODE Processing Pipeline 96b53d37c0ce329433394dc28216ca78 https://www.encodeproject.org/files/ENCFF549PWG/@@download/ENCFF549PWG.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF098HOY bam alignments ENCSR360ANE ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AES, ENCFF018NEO 895047303 ENCODE Processing Pipeline d24cf2af0367418593b52a455166d40e https://www.encodeproject.org/files/ENCFF098HOY/@@download/ENCFF098HOY.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF829WUL bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWJ, ENCFF018NEO 1186989553 ENCODE Processing Pipeline d3a91a618a7e8f26ca23083e29a8fe51 https://www.encodeproject.org/files/ENCFF829WUL/@@download/ENCFF829WUL.bam mm10 released low read length ENCFF097OBB bam alignments ENCSR357JII ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWK, ENCFF018NEO 1277556135 ENCODE Processing Pipeline 35d1dc649d424d9837bad866fc4eb405 https://www.encodeproject.org/files/ENCFF097OBB/@@download/ENCFF097OBB.bam mm10 released low read length ENCFF917WHG bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AIN, ENCFF018NEO 985558051 ENCODE Processing Pipeline 700881e1c3cbabdc1bee3d692d0b946b https://www.encodeproject.org/files/ENCFF917WHG/@@download/ENCFF917WHG.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF076LIY bam alignments ENCSR776QRL ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AIJ, ENCFF018NEO 959501341 ENCODE Processing Pipeline 58f7e7f046669c9021af998fa025844a https://www.encodeproject.org/files/ENCFF076LIY/@@download/ENCFF076LIY.bam mm10 released low read length, mixed read lengths insufficient read depth, control insufficient read depth ENCFF084XLB bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002CCA, ENCFF018NEO 735141042 ENCODE Processing Pipeline 176053422dfb14ad8eb51ca7eb781148 https://www.encodeproject.org/files/ENCFF084XLB/@@download/ENCFF084XLB.bam mm10 released mixed read lengths, low read length, low read depth ENCFF268XUX bam alignments ENCSR258YWW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANE, ENCFF018NEO 721237503 ENCODE Processing Pipeline 79dad5f19e86826300bbfa5b6a592aa0 https://www.encodeproject.org/files/ENCFF268XUX/@@download/ENCFF268XUX.bam mm10 released mixed read lengths, low read length, low read depth ENCFF090OZS bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 799264007 ENCODE Processing Pipeline fcdcce95bdb388d29eecd53730dc4c1a https://www.encodeproject.org/files/ENCFF090OZS/@@download/ENCFF090OZS.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF604FDV bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 896015737 ENCODE Processing Pipeline 90ac4307f906cd7895038a40865dd7e3 https://www.encodeproject.org/files/ENCFF604FDV/@@download/ENCFF604FDV.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF446KMO bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRY, ENCFF018NEO 349383568 ENCODE Processing Pipeline cac54378fab14a75673ca816dffb2934 https://www.encodeproject.org/files/ENCFF446KMO/@@download/ENCFF446KMO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF495YQS bam alignments ENCSR000CDS ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K4me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRU, ENCFF018NEO 232604418 ENCODE Processing Pipeline fc8a67fe244697cc1abceb734f1a14a6 https://www.encodeproject.org/files/ENCFF495YQS/@@download/ENCFF495YQS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF483OCA bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 491617440 ENCODE Processing Pipeline e16a61f83024852e70e71d7907c1a5a4 https://www.encodeproject.org/files/ENCFF483OCA/@@download/ENCFF483OCA.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF539ZGP bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 516170173 ENCODE Processing Pipeline 03477dc8b3bd720654a63c7d8aedd892 https://www.encodeproject.org/files/ENCFF539ZGP/@@download/ENCFF539ZGP.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF717YIV bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002BWC, ENCFF018NEO 1108392086 ENCODE Processing Pipeline fcc69870489a99671e5e0631a5d920a9 https://www.encodeproject.org/files/ENCFF717YIV/@@download/ENCFF717YIV.bam mm10 released low read length, control low read depth ENCFF930YWV bam alignments ENCSR428OEK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BWD, ENCFF018NEO 1185662656 ENCODE Processing Pipeline 85a1c3693bb847debd3045333774d0b4 https://www.encodeproject.org/files/ENCFF930YWV/@@download/ENCFF930YWV.bam mm10 released low read length, control low read depth ENCFF186WJD bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESE, ENCFF018NEO, ENCFF066LKK 997389741 ENCODE Processing Pipeline 9c36e10dbb2b8d14ca90c4b99bab738d https://www.encodeproject.org/files/ENCFF186WJD/@@download/ENCFF186WJD.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF419CLC bam alignments ENCSR607QZE ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESF, ENCFF018NEO, ENCFF254AAJ 1319044784 ENCODE Processing Pipeline 82042473cad2ec4b8862cab9bb186723 https://www.encodeproject.org/files/ENCFF419CLC/@@download/ENCFF419CLC.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF253ODV bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KHW, ENCFF018NEO 369385050 ENCODE Processing Pipeline 758a5e99a3c40b9352993d24133d31b1 https://www.encodeproject.org/files/ENCFF253ODV/@@download/ENCFF253ODV.bam mm10 released low read length, control low read depth insufficient read depth ENCFF673WDW bam alignments ENCSR000CAM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KIA, ENCFF018NEO 251829440 ENCODE Processing Pipeline 02b8c7d7cf62f5238b5166895988abe3 https://www.encodeproject.org/files/ENCFF673WDW/@@download/ENCFF673WDW.bam mm10 released low read length, control low read depth insufficient read depth ENCFF168EEZ bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETF, ENCFF018NEO 1116436779 ENCODE Processing Pipeline bf26c49570646cb0bb3856b85db9f047 https://www.encodeproject.org/files/ENCFF168EEZ/@@download/ENCFF168EEZ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF518JXV bam alignments ENCSR462KTT ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETD, ENCFF018NEO 1000340240 ENCODE Processing Pipeline 269783c2873c4a58f20b50424abda9b4 https://www.encodeproject.org/files/ENCFF518JXV/@@download/ENCFF518JXV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth ENCFF986VDL bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKX, ENCFF018NEO 697245015 ENCODE Processing Pipeline 43e5138f00adfa63bbd841fc9680ec61 https://www.encodeproject.org/files/ENCFF986VDL/@@download/ENCFF986VDL.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF023THF bam alignments ENCSR658TDS ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKW, ENCFF018NEO 902373885 ENCODE Processing Pipeline 9b0a357678ef16d2bf4b72c03ab4e285 https://www.encodeproject.org/files/ENCFF023THF/@@download/ENCFF023THF.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF658GSP bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYQ, ENCFF018NEO 2794808195 ENCODE Processing Pipeline 4f267c95a765a64f36ff6ba7f4b04ce2 https://www.encodeproject.org/files/ENCFF658GSP/@@download/ENCFF658GSP.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF869JLI bam alignments ENCSR000DHL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYV, ENCFF018NEO 3236781368 ENCODE Processing Pipeline a0d88f18e43790ee29ac7a86e2a49dac https://www.encodeproject.org/files/ENCFF869JLI/@@download/ENCFF869JLI.bam mm10 released mild to moderate bottlenecking, inconsistent platforms control insufficient read depth ENCFF441NWZ bam alignments ENCSR000DGU ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQZ, ENCFF018NEO 1343494896 ENCODE Processing Pipeline 5a9f3a3a1b250b664cd6e244d5aa43d6 https://www.encodeproject.org/files/ENCFF441NWZ/@@download/ENCFF441NWZ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF367IUT bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF657VUN 1500435647 ENCODE Processing Pipeline c8fcdacb57ec1200cf4ae9ef5542a1b0 https://www.encodeproject.org/files/ENCFF367IUT/@@download/ENCFF367IUT.bam mm10 released inconsistent platforms ENCFF725NPP bam alignments ENCSR990JMN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF701LKI 1945078620 ENCODE Processing Pipeline d9ba8c9da1c91d21c3e0bc81c800e075 https://www.encodeproject.org/files/ENCFF725NPP/@@download/ENCFF725NPP.bam mm10 released inconsistent platforms ENCFF056IMN bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF320ZCG, ENCFF751LJT 1686821680 ENCODE Processing Pipeline eda54f0f92abd80b5719fd0a11aa8bdb https://www.encodeproject.org/files/ENCFF056IMN/@@download/ENCFF056IMN.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF219FFX bam alignments ENCSR137NUN ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF504IGO, ENCFF657WBS 1505642079 ENCODE Processing Pipeline cc4b3ebe93d93c8adf120e812bb685fa https://www.encodeproject.org/files/ENCFF219FFX/@@download/ENCFF219FFX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF785QDZ bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF527HEG 1770950632 ENCODE Processing Pipeline 8b46fd133f12c9b78757a8c641d69481 https://www.encodeproject.org/files/ENCFF785QDZ/@@download/ENCFF785QDZ.bam mm10 released inconsistent platforms ENCFF524LVP bam alignments ENCSR755PMX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF909TMB 1861335835 ENCODE Processing Pipeline 9fd021c08c63d2f77c45f181ef9d8f37 https://www.encodeproject.org/files/ENCFF524LVP/@@download/ENCFF524LVP.bam mm10 released inconsistent platforms ENCFF556BOJ bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF518NNC, ENCFF618USE 2935455517 ENCODE Processing Pipeline 73276f00922ac268929d0a24030bca1c https://www.encodeproject.org/files/ENCFF556BOJ/@@download/ENCFF556BOJ.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF708TTS bam alignments ENCSR981PSX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus Control-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF091XIS, ENCFF271NJE, ENCFF747OOK, ENCFF771MNJ 3276568337 ENCODE Processing Pipeline ba5f4951a0ba7a985678de31869822f0 https://www.encodeproject.org/files/ENCFF708TTS/@@download/ENCFF708TTS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF722INF bam alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF643VUJ 1834008070 ENCODE Processing Pipeline 42e713e17cacf11a1df1510a9d9c9a42 https://www.encodeproject.org/files/ENCFF722INF/@@download/ENCFF722INF.bam mm10 released mild to moderate bottlenecking ENCFF328STI bam alignments ENCSR825ZJV ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF616SZN 2413252939 ENCODE Processing Pipeline 37a3765c0be7402a2b12d84dff84f94e https://www.encodeproject.org/files/ENCFF328STI/@@download/ENCFF328STI.bam mm10 released mild to moderate bottlenecking ENCFF643BVP bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KXC, ENCFF018NEO 733324851 ENCODE Processing Pipeline 9033604e4f17cb39e59574ca4495e1b0 https://www.encodeproject.org/files/ENCFF643BVP/@@download/ENCFF643BVP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF573UHN bam alignments ENCSR000CGB ChIP-seq UBERON:0000473 testis tissue Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KXB, ENCFF018NEO 856331480 ENCODE Processing Pipeline e8672933ba89322b3eb9a3ee05c632ba https://www.encodeproject.org/files/ENCFF573UHN/@@download/ENCFF573UHN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF597HPS bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 382783589 ENCODE Processing Pipeline ee7679aba57565384a9287ebcb8e687b https://www.encodeproject.org/files/ENCFF597HPS/@@download/ENCFF597HPS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF654LDN bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 353968665 ENCODE Processing Pipeline 40a133f777ed535db675c746eddcfcdd https://www.encodeproject.org/files/ENCFF654LDN/@@download/ENCFF654LDN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF191MHA bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANV, ENCFF018NEO 823354268 ENCODE Processing Pipeline 910b62e3ac4bd3ee6421a3ee01a8545b https://www.encodeproject.org/files/ENCFF191MHA/@@download/ENCFF191MHA.bam mm10 released low read length, control low read depth, low read depth ENCFF497XVC bam alignments ENCSR916CBN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANW, ENCFF018NEO 877031067 ENCODE Processing Pipeline fba2dd3733af20d8934b4c0681f997ed https://www.encodeproject.org/files/ENCFF497XVC/@@download/ENCFF497XVC.bam mm10 released low read length, control low read depth, low read depth ENCFF290PPJ bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AKG, ENCFF018NEO 994027535 ENCODE Processing Pipeline b0a48cae04a5a9f73569da1bc712030d https://www.encodeproject.org/files/ENCFF290PPJ/@@download/ENCFF290PPJ.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF570RBM bam alignments ENCSR523IIH ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AKJ, ENCFF018NEO 1708880920 ENCODE Processing Pipeline a070af399702586b6d77973001050412 https://www.encodeproject.org/files/ENCFF570RBM/@@download/ENCFF570RBM.bam mm10 released mixed read lengths, low read length, antibody characterized with exemption, low read depth insufficient read depth ENCFF311BIT bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1315058962 ENCODE Processing Pipeline 4e1dba33685dae1acbfb4570cca127c1 https://www.encodeproject.org/files/ENCFF311BIT/@@download/ENCFF311BIT.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF377TAN bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 2922459392 ENCODE Processing Pipeline eef8f458818f28713f7d4524b25e1751 https://www.encodeproject.org/files/ENCFF377TAN/@@download/ENCFF377TAN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF078WCY bam alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF708TCP 947356887 ENCODE Processing Pipeline a655df9922cae6c1f582728163cb7613 https://www.encodeproject.org/files/ENCFF078WCY/@@download/ENCFF078WCY.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF766EAE bam alignments ENCSR782DEA ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K4me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF907BFC 1040337383 ENCODE Processing Pipeline b40d73b4085fc0533f8770a56be86620 https://www.encodeproject.org/files/ENCFF766EAE/@@download/ENCFF766EAE.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF043ZAY bam alignments ENCSR000DGR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 7 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRI, ENCFF018NEO 480726577 ENCODE Processing Pipeline 0b40fbd786ecd3a731fd23b2714e7240 https://www.encodeproject.org/files/ENCFF043ZAY/@@download/ENCFF043ZAY.bam mm10 released low read length insufficient read depth ENCFF156KVI bam alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF321AFZ, ENCFF760ZYG 1248787403 ENCODE Processing Pipeline 0936666da0b54392c2cb84e6145dcdad https://www.encodeproject.org/files/ENCFF156KVI/@@download/ENCFF156KVI.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF831KQT bam alignments ENCSR266JQW ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF542QDJ, ENCFF667CSK, ENCFF762BIJ 1969885902 ENCODE Processing Pipeline 0c6d4c2533d1e99af6ac8f6ec592ed0b https://www.encodeproject.org/files/ENCFF831KQT/@@download/ENCFF831KQT.bam mm10 released mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, severe bottlenecking, poor library complexity ENCFF310NCX bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JWV, ENCFF018NEO 544494341 ENCODE Processing Pipeline d341cdb8cb7474e93b0491d7c8045cda https://www.encodeproject.org/files/ENCFF310NCX/@@download/ENCFF310NCX.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF758PYU bam alignments ENCSR000CFC ChIP-seq UBERON:0001348 brown adipose tissue tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JWW, ENCFF018NEO 859035832 ENCODE Processing Pipeline 5caf102fdcc5d4b84fda85d1ed66ecf1 https://www.encodeproject.org/files/ENCFF758PYU/@@download/ENCFF758PYU.bam mm10 released low read length, low read depth insufficient read depth for broad peaks control ENCFF582HXG bam alignments ENCSR000DGS ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRH, ENCFF018NEO 1021536128 ENCODE Processing Pipeline 0d603037c8e2e49d4bdd9f54fe911d69 https://www.encodeproject.org/files/ENCFF582HXG/@@download/ENCFF582HXG.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF536VOA bam alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF982POC 2060725114 ENCODE Processing Pipeline f7b95d06741d73b2bd094d696f4e4dff https://www.encodeproject.org/files/ENCFF536VOA/@@download/ENCFF536VOA.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF331HWN bam alignments ENCSR962MBB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF746ORF 2045868856 ENCODE Processing Pipeline 129eb54bdb151cd8dfb7ae90a5a6a1de https://www.encodeproject.org/files/ENCFF331HWN/@@download/ENCFF331HWN.bam mm10 released mild to moderate bottlenecking, moderate library complexity ENCFF309FVV bam alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF168CSP, ENCFF827ZPT 2079930296 ENCODE Processing Pipeline 1c77493cae0bd1fe9a8979c9c88dd9f6 https://www.encodeproject.org/files/ENCFF309FVV/@@download/ENCFF309FVV.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF794PFH bam alignments ENCSR328WMV ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF337AOQ, ENCFF964GOM 2513586595 ENCODE Processing Pipeline 310a2b01c5b81e904b01787aec3062bf https://www.encodeproject.org/files/ENCFF794PFH/@@download/ENCFF794PFH.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates ENCFF788NIR bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZTH, ENCFF018NEO, ENCFF585BGE 1054178359 ENCODE Processing Pipeline c76b4a1b269e6b796412891e10a9f2f3 https://www.encodeproject.org/files/ENCFF788NIR/@@download/ENCFF788NIR.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF938PKS bam alignments ENCSR963OLG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTM, ENCFF018NEO, ENCFF063ROF 1227085188 ENCODE Processing Pipeline 10e40475ef8edfcced4d87378ed39d2e https://www.encodeproject.org/files/ENCFF938PKS/@@download/ENCFF938PKS.bam mm10 released low read length, mild to moderate bottlenecking, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF468OBA bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AJA, ENCFF018NEO 1121676811 ENCODE Processing Pipeline c403a47ac07f7cf1f4d4424e6848770c https://www.encodeproject.org/files/ENCFF468OBA/@@download/ENCFF468OBA.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF230CYH bam alignments ENCSR516KLO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AJB, ENCFF018NEO 1194301319 ENCODE Processing Pipeline 910672a44e81eb00777b4d28d00bdac8 https://www.encodeproject.org/files/ENCFF230CYH/@@download/ENCFF230CYH.bam mm10 released low read length, mixed read lengths mismatched file status insufficient read depth, control insufficient read depth ENCFF742ORP bam alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF014QMD, ENCFF018NEO, ENCFF217BBI, ENCFF331EKQ 1741072128 ENCODE Processing Pipeline 80b28500ea79e370a0fc96a9c7fbf612 https://www.encodeproject.org/files/ENCFF742ORP/@@download/ENCFF742ORP.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF842YQE bam alignments ENCSR966TCN ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF364QJC, ENCFF448FRQ, ENCFF810KHC 1986908400 ENCODE Processing Pipeline 382d442c13e60d6de01b3b8824bb6384 https://www.encodeproject.org/files/ENCFF842YQE/@@download/ENCFF842YQE.bam mm10 released mild to moderate bottlenecking, low read depth sequencing runs labeled as technical replicates severe bottlenecking, poor library complexity ENCFF836HLY bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001MAI, ENCFF018NEO 634972254 ENCODE Processing Pipeline 5a55efb7db8ea53e605b8ed311080dc4 https://www.encodeproject.org/files/ENCFF836HLY/@@download/ENCFF836HLY.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF439TPF bam alignments ENCSR000DHX ChIP-seq EFO:0002034 G1E stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001MAG, ENCFF018NEO 684389214 ENCODE Processing Pipeline 2123589c97101697b4b9a72263447824 https://www.encodeproject.org/files/ENCFF439TPF/@@download/ENCFF439TPF.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF786TWP bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOP, ENCFF018NEO 510078561 ENCODE Processing Pipeline 48144c7e230803ae926fe0b42330d2e0 https://www.encodeproject.org/files/ENCFF786TWP/@@download/ENCFF786TWP.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF715GVN bam alignments ENCSR000CAR ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me3-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOH, ENCFF018NEO 175680077 ENCODE Processing Pipeline e9cdd85f33666cb26ec2b511935f67b8 https://www.encodeproject.org/files/ENCFF715GVN/@@download/ENCFF715GVN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF692DWM bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 36 ENCFF001LWI, ENCFF018NEO 2952272669 ENCODE Processing Pipeline 6920b259e85273b2a284f46e2e60b8a0 https://www.encodeproject.org/files/ENCFF692DWM/@@download/ENCFF692DWM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF475YCJ bam alignments ENCSR000DHW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 36 ENCFF001LWL, ENCFF018NEO 3102665016 ENCODE Processing Pipeline c5f38e555c13007d3e6327d494dfd36c https://www.encodeproject.org/files/ENCFF475YCJ/@@download/ENCFF475YCJ.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF203OQV bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 660029638 ENCODE Processing Pipeline 914816e14beddad500d2962e04271c98 https://www.encodeproject.org/files/ENCFF203OQV/@@download/ENCFF203OQV.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF530IHQ bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 515801628 ENCODE Processing Pipeline cbbe46b5624d785e233e85d14c0f8290 https://www.encodeproject.org/files/ENCFF530IHQ/@@download/ENCFF530IHQ.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF780TFB bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRK, ENCFF018NEO 319511950 ENCODE Processing Pipeline 666a320423226908f400c2b18d8273bf https://www.encodeproject.org/files/ENCFF780TFB/@@download/ENCFF780TFB.bam mm10 released low read length insufficient read depth ENCFF342BIA bam alignments ENCSR000CEY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRJ, ENCFF018NEO 283918783 ENCODE Processing Pipeline f087652c4274db1a63b6967837ca2a9a https://www.encodeproject.org/files/ENCFF342BIA/@@download/ENCFF342BIA.bam mm10 released low read length insufficient read depth ENCFF242MAA bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002BVZ, ENCFF018NEO 1007802562 ENCODE Processing Pipeline 1858a8f785a483e7ea12b3d4ba0d1dd3 https://www.encodeproject.org/files/ENCFF242MAA/@@download/ENCFF242MAA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF359TVI bam alignments ENCSR797EYS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF018NEO, ENCFF349DZM 708613151 ENCODE Processing Pipeline 5b5fe1056e80123919f32c0d53e6503f https://www.encodeproject.org/files/ENCFF359TVI/@@download/ENCFF359TVI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF318EHA bam alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 2 36 ENCFF018NEO, ENCFF659VUB 450624178 ENCODE Processing Pipeline d93a4f3fbbfcc390af029b44e0adcaf4 https://www.encodeproject.org/files/ENCFF318EHA/@@download/ENCFF318EHA.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF682ICT bam alignments ENCSR095IPH ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus Control-mouse DNA False 2014-10-23 ENCODE 1 36 ENCFF018NEO, ENCFF071UWJ 538332128 ENCODE Processing Pipeline 41c7bc4e0680bd379af7819e8279072d https://www.encodeproject.org/files/ENCFF682ICT/@@download/ENCFF682ICT.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF017EBX bam alignments ENCSR000EUF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NUK, ENCFF018NEO 900446655 ENCODE Processing Pipeline 90765d4081048ba93d242e4c11a3d9cc https://www.encodeproject.org/files/ENCFF017EBX/@@download/ENCFF017EBX.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF361BTU bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 741984974 ENCODE Processing Pipeline a301f91dd208f3c7905a483578c19123 https://www.encodeproject.org/files/ENCFF361BTU/@@download/ENCFF361BTU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF844BWV bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 617496155 ENCODE Processing Pipeline 6807b721b98c9ed72d8c4779838bf40f https://www.encodeproject.org/files/ENCFF844BWV/@@download/ENCFF844BWV.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF536PUP bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KYN, ENCFF018NEO 842808454 ENCODE Processing Pipeline 73f1c19887e2e989ebf2295de8235d83 https://www.encodeproject.org/files/ENCFF536PUP/@@download/ENCFF536PUP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF903YZZ bam alignments ENCSR000CFV ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KYP, ENCFF018NEO 1084773196 ENCODE Processing Pipeline ddcaacf9ad5ca06cc4e0e3254d0c3809 https://www.encodeproject.org/files/ENCFF903YZZ/@@download/ENCFF903YZZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF647QQP bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGP, ENCFF018NEO 951608177 ENCODE Processing Pipeline 1b88e4e12f5c3a8fe353ae474552e756 https://www.encodeproject.org/files/ENCFF647QQP/@@download/ENCFF647QQP.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF148HWT bam alignments ENCSR399UVI ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGR, ENCFF018NEO 922150416 ENCODE Processing Pipeline 4ff0b7fd611d8258d42bb6dd9fd78234 https://www.encodeproject.org/files/ENCFF148HWT/@@download/ENCFF148HWT.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF348HPD bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KEG, ENCFF018NEO 284128022 ENCODE Processing Pipeline 29a10b901cf26a554f6cecfae0f6c656 https://www.encodeproject.org/files/ENCFF348HPD/@@download/ENCFF348HPD.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF121EWQ bam alignments ENCSR000CBF ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KEF, ENCFF018NEO 568019995 ENCODE Processing Pipeline b5b229470ca255eeef4561cd6c52882f https://www.encodeproject.org/files/ENCFF121EWQ/@@download/ENCFF121EWQ.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF846SWR bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 732445194 ENCODE Processing Pipeline 020c7886ae80dedc0f14303ee1370e76 https://www.encodeproject.org/files/ENCFF846SWR/@@download/ENCFF846SWR.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF838XIQ bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 655983259 ENCODE Processing Pipeline b97459f68295b10d756f29af779e841a https://www.encodeproject.org/files/ENCFF838XIQ/@@download/ENCFF838XIQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF975YHZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 619217855 ENCODE Processing Pipeline e1f1748bdcbf62103b012a64c6acdc4d https://www.encodeproject.org/files/ENCFF975YHZ/@@download/ENCFF975YHZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF884OQV bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 537380418 ENCODE Processing Pipeline 1eb1a3c6a90683e3ac2841bf113b73aa https://www.encodeproject.org/files/ENCFF884OQV/@@download/ENCFF884OQV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF049EYU bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 663897338 ENCODE Processing Pipeline a7f724793df140aadfeb3e8d98390f55 https://www.encodeproject.org/files/ENCFF049EYU/@@download/ENCFF049EYU.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF629AKI bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 742191086 ENCODE Processing Pipeline 5e32c0fa016edf03b1c5279df8916aeb https://www.encodeproject.org/files/ENCFF629AKI/@@download/ENCFF629AKI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF846GLS bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001MDP, ENCFF018NEO 2901315783 ENCODE Processing Pipeline 20225563a5b8864b7051240b7da05d85 https://www.encodeproject.org/files/ENCFF846GLS/@@download/ENCFF846GLS.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF587TYG bam alignments ENCSR000DHR ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus H3K4me1-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001MDQ, ENCFF018NEO 4521838196 ENCODE Processing Pipeline cbc9a94c72042b4cd54b6d3151f16424 https://www.encodeproject.org/files/ENCFF587TYG/@@download/ENCFF587TYG.bam mm10 released inconsistent platforms biological replicates with identical biosample ENCFF775BML bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 1389677911 ENCODE Processing Pipeline a88228ed0c69362cfab83b6eecf28629 https://www.encodeproject.org/files/ENCFF775BML/@@download/ENCFF775BML.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF536YVP bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1353141107 ENCODE Processing Pipeline 399fadeeaeff1b791db6ab1f20f8d39a https://www.encodeproject.org/files/ENCFF536YVP/@@download/ENCFF536YVP.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF442YKL bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 542742812 ENCODE Processing Pipeline 855c921b2393571e054273d6aeee6bbc https://www.encodeproject.org/files/ENCFF442YKL/@@download/ENCFF442YKL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF106BFG bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 640421622 ENCODE Processing Pipeline 658267062caf03d056a39ca3cb671497 https://www.encodeproject.org/files/ENCFF106BFG/@@download/ENCFF106BFG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF426QSR bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AEN, ENCFF018NEO 881212282 ENCODE Processing Pipeline b24fa351d0002e36dda5c4835a28efcb https://www.encodeproject.org/files/ENCFF426QSR/@@download/ENCFF426QSR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF418VQH bam alignments ENCSR320EEW ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AEO, ENCFF018NEO 582648710 ENCODE Processing Pipeline b65a7b369b3ee3f36d043c253c01f39a https://www.encodeproject.org/files/ENCFF418VQH/@@download/ENCFF418VQH.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth ENCFF946TKX bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMF, ENCFF018NEO 845819652 ENCODE Processing Pipeline a8acb125dc752a53785908467963bb51 https://www.encodeproject.org/files/ENCFF946TKX/@@download/ENCFF946TKX.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF197UYP bam alignments ENCSR322XHD ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMG, ENCFF018NEO 401615980 ENCODE Processing Pipeline 3e34d1dfad983a5bf80e94c58d10d54b https://www.encodeproject.org/files/ENCFF197UYP/@@download/ENCFF197UYP.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth severe bottlenecking, poor library complexity ENCFF911HXZ bam alignments ENCSR000DGV ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 14 hour Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQW, ENCFF018NEO 1164889447 ENCODE Processing Pipeline 4e22bb30cdbae811670d42a8d598fa6e https://www.encodeproject.org/files/ENCFF911HXZ/@@download/ENCFF911HXZ.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF900FRN bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AON, ENCFF018NEO 1036324167 ENCODE Processing Pipeline 48bc1915ae135a0eb7eacb8d7c193f3f https://www.encodeproject.org/files/ENCFF900FRN/@@download/ENCFF900FRN.bam mm10 released ENCFF119JGF bam alignments ENCSR249AUA ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOJ, ENCFF018NEO 990751324 ENCODE Processing Pipeline 818fc92db757dd4184d1f1580b51a420 https://www.encodeproject.org/files/ENCFF119JGF/@@download/ENCFF119JGF.bam mm10 released ENCFF928UQF bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 394816691 ENCODE Processing Pipeline 29ec02c9c3704d56c043b35a490ba696 https://www.encodeproject.org/files/ENCFF928UQF/@@download/ENCFF928UQF.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF572FAR bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 662970548 ENCODE Processing Pipeline 41118fc6c594c3cdfb4b1fc7805ae14f https://www.encodeproject.org/files/ENCFF572FAR/@@download/ENCFF572FAR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF962LTG bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESK, ENCFF018NEO, ENCFF327XTQ 991457328 ENCODE Processing Pipeline 798ca802a7e572d22b8e1a0712452b39 https://www.encodeproject.org/files/ENCFF962LTG/@@download/ENCFF962LTG.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF821RRY bam alignments ENCSR946JEA ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESU, ENCFF018NEO 1064175793 ENCODE Processing Pipeline 39b6dc4d1752d6aea21fda590d9b9065 https://www.encodeproject.org/files/ENCFF821RRY/@@download/ENCFF821RRY.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF083UAF bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSC, ENCFF002DSD, ENCFF018NEO 908262764 ENCODE Processing Pipeline 43c8106d58ad08366bda1df4adaa1e2f https://www.encodeproject.org/files/ENCFF083UAF/@@download/ENCFF083UAF.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF406TMT bam alignments ENCSR965JWF ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSG, ENCFF002DSH, ENCFF018NEO 1109577760 ENCODE Processing Pipeline 24a7f5ce4d7148f1d9c7292e50c95925 https://www.encodeproject.org/files/ENCFF406TMT/@@download/ENCFF406TMT.bam mm10 released low read length sequencing runs labeled as technical replicates control insufficient read depth ENCFF280XYK bam alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 1 50 ENCFF018NEO, ENCFF524CAC 2375050251 ENCODE Processing Pipeline d6d42b54bf044027e495d0d0345e425f https://www.encodeproject.org/files/ENCFF280XYK/@@download/ENCFF280XYK.bam mm10 released ENCFF531DRS bam alignments ENCSR687ALB ChIP-seq UBERON:0002101 limb tissue Mus musculus Control-mouse DNA SDS False 2016-07-19 ENCODE 2 50 ENCFF018NEO, ENCFF163AJI 2597884851 ENCODE Processing Pipeline acd15a935f0aed301682cec970380b06 https://www.encodeproject.org/files/ENCFF531DRS/@@download/ENCFF531DRS.bam mm10 released ENCFF114YOO bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 613018324 ENCODE Processing Pipeline 3cb74e6a5af792806b9bbd11fd8828b5 https://www.encodeproject.org/files/ENCFF114YOO/@@download/ENCFF114YOO.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF257JDR bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1144350393 ENCODE Processing Pipeline 782de749288fac892aa26cd36ca5e195 https://www.encodeproject.org/files/ENCFF257JDR/@@download/ENCFF257JDR.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF211JZH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 539425575 ENCODE Processing Pipeline e7731ad8e4d741483cfd649c4fa3639b https://www.encodeproject.org/files/ENCFF211JZH/@@download/ENCFF211JZH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF123LVH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 606561663 ENCODE Processing Pipeline b2cda9b4cd579c9f9ba06048d21af92d https://www.encodeproject.org/files/ENCFF123LVH/@@download/ENCFF123LVH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF087FBF bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOF, ENCFF018NEO 864022880 ENCODE Processing Pipeline c0ccd4516838a6896cc0cb8e569baa3f https://www.encodeproject.org/files/ENCFF087FBF/@@download/ENCFF087FBF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF487UBO bam alignments ENCSR067FKP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOM, ENCFF018NEO 1059747362 ENCODE Processing Pipeline 8905356d4f09c6e6949e60832560bb57 https://www.encodeproject.org/files/ENCFF487UBO/@@download/ENCFF487UBO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking ENCFF170BUL bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 642545742 ENCODE Processing Pipeline 278cbc99e956a2505fa2efc2d4acfaf3 https://www.encodeproject.org/files/ENCFF170BUL/@@download/ENCFF170BUL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF886LQZ bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 652949954 ENCODE Processing Pipeline e29629fe5481fb35ab1b361902a23380 https://www.encodeproject.org/files/ENCFF886LQZ/@@download/ENCFF886LQZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF140IYZ bam alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 2 ENCFF018NEO, ENCFF325FAW 1660399844 ENCODE Processing Pipeline e4867863e94de476d7cc10db4fc3550e https://www.encodeproject.org/files/ENCFF140IYZ/@@download/ENCFF140IYZ.bam mm10 released mild to moderate bottlenecking ENCFF112HWN bam alignments ENCSR151APL ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2016-07-19 ENCODE 1 ENCFF018NEO, ENCFF504ZKY 2608115611 ENCODE Processing Pipeline 02f5774a2a65882a973ad47070369b36 https://www.encodeproject.org/files/ENCFF112HWN/@@download/ENCFF112HWN.bam mm10 released mild to moderate bottlenecking ENCFF351KUA bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 927196561 ENCODE Processing Pipeline 86b03e93762d2afa6271865b28ebf94c https://www.encodeproject.org/files/ENCFF351KUA/@@download/ENCFF351KUA.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF848TVS bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 968236432 ENCODE Processing Pipeline 1c24d67a530793d47394bbc07a529b7f https://www.encodeproject.org/files/ENCFF848TVS/@@download/ENCFF848TVS.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF949SRZ bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001JZD, ENCFF018NEO 345255395 ENCODE Processing Pipeline 5d8be817b6cb4a925e3b9c671f585be8 https://www.encodeproject.org/files/ENCFF949SRZ/@@download/ENCFF949SRZ.bam mm10 released low read length, low read depth insufficient read depth ENCFF715DTN bam alignments ENCSR000CFD ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001JZF, ENCFF018NEO 412374812 ENCODE Processing Pipeline 4c22828100e63fef26e5561f07373d86 https://www.encodeproject.org/files/ENCFF715DTN/@@download/ENCFF715DTN.bam mm10 released low read length, low read depth insufficient read depth ENCFF484OES bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 580227677 ENCODE Processing Pipeline 70e35cd4eaa9e8b1a2f424d2f9f7759e https://www.encodeproject.org/files/ENCFF484OES/@@download/ENCFF484OES.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF316WLC bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 564131551 ENCODE Processing Pipeline 0d5d6c081424c2ee5be2cf41cb19ce5f https://www.encodeproject.org/files/ENCFF316WLC/@@download/ENCFF316WLC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF881FSZ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 661282685 ENCODE Processing Pipeline 1269770bf0dc7c37d89fdfc73e2b7116 https://www.encodeproject.org/files/ENCFF881FSZ/@@download/ENCFF881FSZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF352KWE bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 496561585 ENCODE Processing Pipeline c759df7ff642b0907834e58a76474926 https://www.encodeproject.org/files/ENCFF352KWE/@@download/ENCFF352KWE.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF283CTW bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KYT, ENCFF018NEO 382485508 ENCODE Processing Pipeline 6ae1d3a985e825e9d71eb6b282440d1d https://www.encodeproject.org/files/ENCFF283CTW/@@download/ENCFF283CTW.bam mm10 released low read length, low read depth insufficient read depth ENCFF347BCY bam alignments ENCSR000CCK ChIP-seq UBERON:0002370 thymus tissue Mus musculus Control-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KYS, ENCFF018NEO 418937812 ENCODE Processing Pipeline 2b560cfb03c89ad0a1e7d9be0de1fb38 https://www.encodeproject.org/files/ENCFF347BCY/@@download/ENCFF347BCY.bam mm10 released low read length, low read depth insufficient read depth ENCFF695ZHK bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 699176703 ENCODE Processing Pipeline 42fea946b293c9f6bca976352a6e186e https://www.encodeproject.org/files/ENCFF695ZHK/@@download/ENCFF695ZHK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF195QUA bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 701248210 ENCODE Processing Pipeline e061e491fdbd1b822db7816d0992a937 https://www.encodeproject.org/files/ENCFF195QUA/@@download/ENCFF195QUA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF532DSC bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1136376170 ENCODE Processing Pipeline d64fd74e5f02c0f445de727bc906e970 https://www.encodeproject.org/files/ENCFF532DSC/@@download/ENCFF532DSC.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF294OQM bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 1881495435 ENCODE Processing Pipeline 2fc388d04d25b482ad11a1b44eff8744 https://www.encodeproject.org/files/ENCFF294OQM/@@download/ENCFF294OQM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF691FJO bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF826YGB, ENCFF829ICZ 2717120271 ENCODE Processing Pipeline a31546a64d0caae79e02e13624e31f00 https://www.encodeproject.org/files/ENCFF691FJO/@@download/ENCFF691FJO.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF408PUU bam alignments ENCSR380BBL ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF089OZC 2797646805 ENCODE Processing Pipeline 718450a20d2c99e3282cfb00de81b98b https://www.encodeproject.org/files/ENCFF408PUU/@@download/ENCFF408PUU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF907CDE bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 50 ENCFF018NEO, ENCFF122VYX, ENCFF680BTD 1333035792 ENCODE Processing Pipeline 00fa3c75f18c62d01c1bb4c2e746a153 https://www.encodeproject.org/files/ENCFF907CDE/@@download/ENCFF907CDE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF147WZA bam alignments ENCSR022DED ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 50 ENCFF018NEO, ENCFF030PAP, ENCFF861UVB 1479450884 ENCODE Processing Pipeline 88115c11364bd6c48d50a06c2add0ff5 https://www.encodeproject.org/files/ENCFF147WZA/@@download/ENCFF147WZA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF752PJZ bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFU, ENCFF018NEO 1106322054 ENCODE Processing Pipeline b098feab040d998ee53bae60814abd2e https://www.encodeproject.org/files/ENCFF752PJZ/@@download/ENCFF752PJZ.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF324VCI bam alignments ENCSR332JYZ ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFW, ENCFF018NEO 1600681024 ENCODE Processing Pipeline 38fd64871c07955a8dd43383a0903de6 https://www.encodeproject.org/files/ENCFF324VCI/@@download/ENCFF324VCI.bam mm10 released mild to moderate bottlenecking, low read depth ENCFF148NIG bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 239460877 ENCODE Processing Pipeline 390d9114197bd8c5a3d3cfc3a85791d3 https://www.encodeproject.org/files/ENCFF148NIG/@@download/ENCFF148NIG.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF341KOD bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 276369068 ENCODE Processing Pipeline cb9699668e7651c07f140f29eec0193c https://www.encodeproject.org/files/ENCFF341KOD/@@download/ENCFF341KOD.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF048SKE bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 207606107 ENCODE Processing Pipeline 6c0dd57badf4a2ccfef0bea377198d7d https://www.encodeproject.org/files/ENCFF048SKE/@@download/ENCFF048SKE.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF105EZY bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 499236178 ENCODE Processing Pipeline 7313694795f30b8a36bdb80501981090 https://www.encodeproject.org/files/ENCFF105EZY/@@download/ENCFF105EZY.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF315SAY bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 747126420 ENCODE Processing Pipeline 57048197294ac52109e37a49524dd167 https://www.encodeproject.org/files/ENCFF315SAY/@@download/ENCFF315SAY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF554HHU bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 547383652 ENCODE Processing Pipeline 12ee59cf0a635c06b1eb7b7f02b7a4aa https://www.encodeproject.org/files/ENCFF554HHU/@@download/ENCFF554HHU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF501EBY bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF676UIZ 1889118019 ENCODE Processing Pipeline bcfb7a40c715da2e2eb173286838fe11 https://www.encodeproject.org/files/ENCFF501EBY/@@download/ENCFF501EBY.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF938IJT bam alignments ENCSR973AYQ ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF932RNG 1645355639 ENCODE Processing Pipeline 0a629b2cad4f5781ef92450e6e8a4806 https://www.encodeproject.org/files/ENCFF938IJT/@@download/ENCFF938IJT.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF253JKS bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZUN, ENCFF018NEO 683886905 ENCODE Processing Pipeline 47a4b30bf1290e68b84f87d05ae28e07 https://www.encodeproject.org/files/ENCFF253JKS/@@download/ENCFF253JKS.bam mm10 released low read length, low read depth ENCFF133FNA bam alignments ENCSR283RFW ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUP, ENCFF018NEO 728616803 ENCODE Processing Pipeline 42fffb90dcf9657f90d9201f7878d92d https://www.encodeproject.org/files/ENCFF133FNA/@@download/ENCFF133FNA.bam mm10 released low read length, low read depth ENCFF641TEA bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 384212350 ENCODE Processing Pipeline cc4c7fa4e0ab0ece9d833083d3835877 https://www.encodeproject.org/files/ENCFF641TEA/@@download/ENCFF641TEA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF385EDC bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 588484753 ENCODE Processing Pipeline 389c52de4f3cdcb6b415c0cc22b6b528 https://www.encodeproject.org/files/ENCFF385EDC/@@download/ENCFF385EDC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF944TDI bam alignments ENCSR000DGZ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 30 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 48 ENCFF001MQL, ENCFF018NEO 2370441366 ENCODE Processing Pipeline 540cb4fdfed5ba39358fb18ad7f4e484 https://www.encodeproject.org/files/ENCFF944TDI/@@download/ENCFF944TDI.bam mm10 released ENCFF169ABU bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF002WXS, ENCFF018NEO, ENCFF221DGD, ENCFF972CBX 2974352724 ENCODE Processing Pipeline 603d0f8e9e614f0e80881562d1e9fcd4 https://www.encodeproject.org/files/ENCFF169ABU/@@download/ENCFF169ABU.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF087ITV bam alignments ENCSR560CIG ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF113UTS, ENCFF357LNF 3127105258 ENCODE Processing Pipeline d7edf05838a478660e5bb758684ae7bc https://www.encodeproject.org/files/ENCFF087ITV/@@download/ENCFF087ITV.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF677ASA bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF192AME 3044082551 ENCODE Processing Pipeline e37fab182357f2f0a0fed53ee207765f https://www.encodeproject.org/files/ENCFF677ASA/@@download/ENCFF677ASA.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF668ZKU bam alignments ENCSR580MEU ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF664BYP 2959943279 ENCODE Processing Pipeline 889596b15ece179875af951b1272e6ae https://www.encodeproject.org/files/ENCFF668ZKU/@@download/ENCFF668ZKU.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF189YWL bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMV, ENCFF018NEO 679095757 ENCODE Processing Pipeline 7f24c18661c7699ba96816e8c851bce6 https://www.encodeproject.org/files/ENCFF189YWL/@@download/ENCFF189YWL.bam mm10 released low read length, low read depth ENCFF953IAT bam alignments ENCSR203KIB ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMY, ENCFF018NEO 823601653 ENCODE Processing Pipeline c5560792215a131b094b346a092f7cdb https://www.encodeproject.org/files/ENCFF953IAT/@@download/ENCFF953IAT.bam mm10 released low read length, low read depth ENCFF939LXA bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF037BQD, ENCFF324TUU 2636313191 ENCODE Processing Pipeline ff5e3da410295bcaaba9f33667baebf7 https://www.encodeproject.org/files/ENCFF939LXA/@@download/ENCFF939LXA.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF133ZFX bam alignments ENCSR107SLP ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF049PUD, ENCFF100BFU 2815320883 ENCODE Processing Pipeline 4819a4263a3484d7110a820854c54360 https://www.encodeproject.org/files/ENCFF133ZFX/@@download/ENCFF133ZFX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF004LLG bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF288PUA 1503734955 ENCODE Processing Pipeline ca43a27354e7778a9fa6337406a43423 https://www.encodeproject.org/files/ENCFF004LLG/@@download/ENCFF004LLG.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF886DGE bam alignments ENCSR382DRK ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF222ACN 1927862863 ENCODE Processing Pipeline dda49472577fdc91d032d63ad9eefcd8 https://www.encodeproject.org/files/ENCFF886DGE/@@download/ENCFF886DGE.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF452WYT bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF196CAL, ENCFF634YYY, ENCFF992TXH 2928786979 ENCODE Processing Pipeline 0dbb3e90d38c56a6b9ba7d2d60d010e3 https://www.encodeproject.org/files/ENCFF452WYT/@@download/ENCFF452WYT.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF764RAD bam alignments ENCSR606AJV ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF368WCQ, ENCFF884TCF 2996280648 ENCODE Processing Pipeline 38608d9a6a1a2f8f41db1f876b27fae6 https://www.encodeproject.org/files/ENCFF764RAD/@@download/ENCFF764RAD.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF883AUA bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF001ZTU, ENCFF018NEO 701392426 ENCODE Processing Pipeline 2fb68f8f581f031a86cfbb00e1cadcb3 https://www.encodeproject.org/files/ENCFF883AUA/@@download/ENCFF883AUA.bam mm10 released low read length, control low read depth, low read depth ENCFF904OSZ bam alignments ENCSR320CCJ ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF001ZUC, ENCFF018NEO 604254033 ENCODE Processing Pipeline 3082a838154dd7ca084ade993ee79d4a https://www.encodeproject.org/files/ENCFF904OSZ/@@download/ENCFF904OSZ.bam mm10 released low read length, control low read depth, low read depth ENCFF014AXW bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF149QNC 1276442451 ENCODE Processing Pipeline 82c350d38ac182116ca1433c31550d7b https://www.encodeproject.org/files/ENCFF014AXW/@@download/ENCFF014AXW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF547RHW bam alignments ENCSR193AEW ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me2-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF057AHM 1438431150 ENCODE Processing Pipeline 40077f0a2e05b087e605c4c62e5a720f https://www.encodeproject.org/files/ENCFF547RHW/@@download/ENCFF547RHW.bam mm10 released mild to moderate bottlenecking, inconsistent platforms ENCFF317KQT bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 436048000 ENCODE Processing Pipeline 5d8c665bb48f430e00ca7669f7d42269 https://www.encodeproject.org/files/ENCFF317KQT/@@download/ENCFF317KQT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF623XLE bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 249245474 ENCODE Processing Pipeline 4bcefa9f7856352790db72d3df538d08 https://www.encodeproject.org/files/ENCFF623XLE/@@download/ENCFF623XLE.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF238AQR bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KFY, ENCFF018NEO 391775734 ENCODE Processing Pipeline 1658a3619642bf17200e3db1bcf17267 https://www.encodeproject.org/files/ENCFF238AQR/@@download/ENCFF238AQR.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF407AYA bam alignments ENCSR000CGP ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus H3K9ac-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KFS, ENCFF018NEO 457249705 ENCODE Processing Pipeline e637b3fd0db6b0b0e1da86f29e140fe2 https://www.encodeproject.org/files/ENCFF407AYA/@@download/ENCFF407AYA.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth insufficient read depth, severe bottlenecking, poor library complexity ENCFF435PNS bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF486AWC 1271618739 ENCODE Processing Pipeline f14e5dd315b9da8d2a65afbcd6699c55 https://www.encodeproject.org/files/ENCFF435PNS/@@download/ENCFF435PNS.bam mm10 released inconsistent platforms ENCFF701UTA bam alignments ENCSR147PYG ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF263LNO 1278189803 ENCODE Processing Pipeline 06753870221f2e904b64623ca72d4bd9 https://www.encodeproject.org/files/ENCFF701UTA/@@download/ENCFF701UTA.bam mm10 released inconsistent platforms ENCFF258ATT bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AIM, ENCFF018NEO, ENCFF393IDV 1492139964 ENCODE Processing Pipeline 61eaeafaa1400c522f6fe3db9109f125 https://www.encodeproject.org/files/ENCFF258ATT/@@download/ENCFF258ATT.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF645UXS bam alignments ENCSR483KOD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AIR, ENCFF018NEO, ENCFF301TLK 1091939835 ENCODE Processing Pipeline e6570d1da7cf61539ff4d250592880ad https://www.encodeproject.org/files/ENCFF645UXS/@@download/ENCFF645UXS.bam mm10 released moderate library complexity, mild to moderate bottlenecking sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF419UVS bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KRZ, ENCFF018NEO 310675894 ENCODE Processing Pipeline 9b9d5965e0e490145a8a565967557561 https://www.encodeproject.org/files/ENCFF419UVS/@@download/ENCFF419UVS.bam mm10 released low read length, low read depth insufficient read depth ENCFF615AOI bam alignments ENCSR000CCE ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KSE, ENCFF018NEO 427070568 ENCODE Processing Pipeline 0c0dc4ffe4e2aa3b722d119d4e3e1e08 https://www.encodeproject.org/files/ENCFF615AOI/@@download/ENCFF615AOI.bam mm10 released low read length, low read depth insufficient read depth ENCFF538SNE bam alignments ENCSR000DGW ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus Control-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MRP, ENCFF018NEO 1042803244 ENCODE Processing Pipeline 76f28cabc258215dd9b857c4931b7900 https://www.encodeproject.org/files/ENCFF538SNE/@@download/ENCFF538SNE.bam mm10 released low read length insufficient read depth for broad peaks control ENCFF705BZW bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 1 36 ENCFF002BVT, ENCFF018NEO, ENCFF799CNX 975222689 ENCODE Processing Pipeline 824a2e0c192e2ef080586f3a3a722728 https://www.encodeproject.org/files/ENCFF705BZW/@@download/ENCFF705BZW.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF613RIM bam alignments ENCSR846ZCW ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-18 ENCODE 2 36 ENCFF002BVP, ENCFF002BVV, ENCFF018NEO 1254225409 ENCODE Processing Pipeline 2928d8f609d9d4ffd1726af2a9c66b20 https://www.encodeproject.org/files/ENCFF613RIM/@@download/ENCFF613RIM.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates control insufficient read depth ENCFF955KYL bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KNP, ENCFF018NEO 607073876 ENCODE Processing Pipeline f039368d183df2771b1c9e8f87e19f54 https://www.encodeproject.org/files/ENCFF955KYL/@@download/ENCFF955KYL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF754DMZ bam alignments ENCSR000CEP ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K79me2-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KNQ, ENCFF018NEO 550275996 ENCODE Processing Pipeline 49f1cff4c4bfeaa62c12aa6477874765 https://www.encodeproject.org/files/ENCFF754DMZ/@@download/ENCFF754DMZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, control insufficient read depth ENCFF369MZW bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALV, ENCFF018NEO 743944472 ENCODE Processing Pipeline 76dd66811996ba9ac282456ba44e298d https://www.encodeproject.org/files/ENCFF369MZW/@@download/ENCFF369MZW.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF637RHJ bam alignments ENCSR340VNK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMB, ENCFF018NEO 719175472 ENCODE Processing Pipeline 195df1bac07deba7ee980c4ee936b6ae https://www.encodeproject.org/files/ENCFF637RHJ/@@download/ENCFF637RHJ.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF289RMU bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002ALP, ENCFF018NEO 624973214 ENCODE Processing Pipeline 604b633daaceef21f8dc9bbb2507d1b9 https://www.encodeproject.org/files/ENCFF289RMU/@@download/ENCFF289RMU.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF909LEP bam alignments ENCSR333ZWB ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002ALT, ENCFF018NEO 983875650 ENCODE Processing Pipeline 4838ad714497a58397d5b5548e17861c https://www.encodeproject.org/files/ENCFF909LEP/@@download/ENCFF909LEP.bam mm10 released moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF726OSP bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KMH, ENCFF018NEO 402958942 ENCODE Processing Pipeline 8f6a02e8812ac5ae1de6b711dc96f006 https://www.encodeproject.org/files/ENCFF726OSP/@@download/ENCFF726OSP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF734PDO bam alignments ENCSR000CDH ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KMI, ENCFF018NEO 535296201 ENCODE Processing Pipeline 438b6a0217862e75c83b91d9a3f1e26c https://www.encodeproject.org/files/ENCFF734PDO/@@download/ENCFF734PDO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF041GIV bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KED, ENCFF018NEO 564885160 ENCODE Processing Pipeline 8a3870fb31a4ca9e1954ac6b75a79471 https://www.encodeproject.org/files/ENCFF041GIV/@@download/ENCFF041GIV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF006QMD bam alignments ENCSR000CFN ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KEC, ENCFF018NEO 409632493 ENCODE Processing Pipeline 50ac6306bead63cb8b8d280995c7ea03 https://www.encodeproject.org/files/ENCFF006QMD/@@download/ENCFF006QMD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF868MGY bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KRA, ENCFF018NEO 868111808 ENCODE Processing Pipeline a4b8683f2044f6a7cf746e6d6679d7f8 https://www.encodeproject.org/files/ENCFF868MGY/@@download/ENCFF868MGY.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF126ATE bam alignments ENCSR000CES ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQZ, ENCFF018NEO 790548497 ENCODE Processing Pipeline 4d062fa1e7e972042a14d5d6799d50d1 https://www.encodeproject.org/files/ENCFF126ATE/@@download/ENCFF126ATE.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF134EZT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 878161766 ENCODE Processing Pipeline 2d672c14214cb4609cee91f7eece0049 https://www.encodeproject.org/files/ENCFF134EZT/@@download/ENCFF134EZT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF575MON bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1132869165 ENCODE Processing Pipeline 0f20756ccdc361f2476d5cee21be03f0 https://www.encodeproject.org/files/ENCFF575MON/@@download/ENCFF575MON.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF658GXG bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KQL, ENCFF018NEO 380133266 ENCODE Processing Pipeline b6ee840b1d49bbc0b894ae55d09bea7b https://www.encodeproject.org/files/ENCFF658GXG/@@download/ENCFF658GXG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF067WIS bam alignments ENCSR000CEV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KQK, ENCFF018NEO 413631103 ENCODE Processing Pipeline 7e0a595593706efbcc79d4ee4e1ec919 https://www.encodeproject.org/files/ENCFF067WIS/@@download/ENCFF067WIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF054PYK bam alignments ENCSR000DGY ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 3 hour GATA1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MQJ, ENCFF018NEO 1378213180 ENCODE Processing Pipeline c4fd930589ffcd9d2297a58ddcd478df https://www.encodeproject.org/files/ENCFF054PYK/@@download/ENCFF054PYK.bam mm10 released low read length, inconsistent platforms ENCFF770YME bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AMZ, ENCFF018NEO 610875460 ENCODE Processing Pipeline 1f6d54a49d7b57af4894b05063649559 https://www.encodeproject.org/files/ENCFF770YME/@@download/ENCFF770YME.bam mm10 released low read length, control low read depth, low read depth ENCFF141HPN bam alignments ENCSR023VJO ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANA, ENCFF018NEO 736673833 ENCODE Processing Pipeline de50fc752a7649eb1fd027a33032e6da https://www.encodeproject.org/files/ENCFF141HPN/@@download/ENCFF141HPN.bam mm10 released low read length, control low read depth, low read depth ENCFF829KJG bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHU, ENCFF018NEO, ENCFF985XHS 1114847057 ENCODE Processing Pipeline c6115a2e08b57afa0fc0155b007493e0 https://www.encodeproject.org/files/ENCFF829KJG/@@download/ENCFF829KJG.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF145CIM bam alignments ENCSR425FLT ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHX, ENCFF018NEO 999073614 ENCODE Processing Pipeline 62ee98462f98c58a0d097e7afd2526ec https://www.encodeproject.org/files/ENCFF145CIM/@@download/ENCFF145CIM.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF746MFH bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002BGP, ENCFF018NEO, ENCFF979SCL 1226645061 ENCODE Processing Pipeline 883048071f025c61c817feebf28bcbae https://www.encodeproject.org/files/ENCFF746MFH/@@download/ENCFF746MFH.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF831WZT bam alignments ENCSR674PZU ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002BGW, ENCFF018NEO 1309032668 ENCODE Processing Pipeline 9e3d0bacb7049afe3bd91ed7888e2ca4 https://www.encodeproject.org/files/ENCFF831WZT/@@download/ENCFF831WZT.bam mm10 released low read length, antibody characterized with exemption, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF224AIG bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AMT, ENCFF002AMU, ENCFF018NEO 711262349 ENCODE Processing Pipeline b7a85651cbcb3504e30ee1339f157aae https://www.encodeproject.org/files/ENCFF224AIG/@@download/ENCFF224AIG.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF989GSB bam alignments ENCSR093BYV ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANC, ENCFF018NEO 862469134 ENCODE Processing Pipeline 6fb8c7569f36661bb607214fd552d074 https://www.encodeproject.org/files/ENCFF989GSB/@@download/ENCFF989GSB.bam mm10 released mixed read lengths, low read length, control low read depth, low read depth sequencing runs labeled as technical replicates ENCFF156ZFI bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF523XWQ 2052854076 ENCODE Processing Pipeline 9b709e11051a4f0d0b7e51f312da66a7 https://www.encodeproject.org/files/ENCFF156ZFI/@@download/ENCFF156ZFI.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF052AZF bam alignments ENCSR988BRP ChIP-seq UBERON:0002101 limb tissue Mus musculus H3K27ac-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF414TSQ 1767414197 ENCODE Processing Pipeline 767ff9587dd6915f4978bcdd7e424505 https://www.encodeproject.org/files/ENCFF052AZF/@@download/ENCFF052AZF.bam mm10 released moderate library complexity, mild to moderate bottlenecking, inconsistent platforms ENCFF049LRQ bam alignments ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AFV, ENCFF018NEO 1177772538 ENCODE Processing Pipeline f91d995353a23a1b9b35565d66bb26a9 https://www.encodeproject.org/files/ENCFF049LRQ/@@download/ENCFF049LRQ.bam mm10 released mild to moderate bottlenecking ENCFF676EHD bam alignments ENCSR140YPL ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AFR, ENCFF018NEO 1310682876 ENCODE Processing Pipeline c05d72b350159ace4d587062072fb215 https://www.encodeproject.org/files/ENCFF676EHD/@@download/ENCFF676EHD.bam mm10 released mild to moderate bottlenecking ENCFF427XVM bam alignments ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ANI, ENCFF018NEO 670791695 ENCODE Processing Pipeline 1fe8a7ab95950345aa1f13b78f159373 https://www.encodeproject.org/files/ENCFF427XVM/@@download/ENCFF427XVM.bam mm10 released low read length, low read depth ENCFF023ZTU bam alignments ENCSR536ILV ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K4me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ANL, ENCFF018NEO 643246532 ENCODE Processing Pipeline e6387ccf0574fef743f0fddb930fdacd https://www.encodeproject.org/files/ENCFF023ZTU/@@download/ENCFF023ZTU.bam mm10 released low read length, low read depth ENCFF124DDW bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 36 ENCFF001KDM, ENCFF018NEO 362296223 ENCODE Processing Pipeline dd6ae80995483f7f1f1b1cd274f1bf8c https://www.encodeproject.org/files/ENCFF124DDW/@@download/ENCFF124DDW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF120WWC bam alignments ENCSR000CFZ ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K9me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 36 ENCFF001KDP, ENCFF018NEO 494378595 ENCODE Processing Pipeline 56e1b12cd52ec4f0320906efa2767fad https://www.encodeproject.org/files/ENCFF120WWC/@@download/ENCFF120WWC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF972RFC bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AHL, ENCFF018NEO, ENCFF815GRU 1129881877 ENCODE Processing Pipeline 115237fb7e9bc1336eaae81e572aee82 https://www.encodeproject.org/files/ENCFF972RFC/@@download/ENCFF972RFC.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF196YTT bam alignments ENCSR641EME ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHO, ENCFF018NEO 1075798414 ENCODE Processing Pipeline 625d34e45a419cf53a53c4dadbd817c9 https://www.encodeproject.org/files/ENCFF196YTT/@@download/ENCFF196YTT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF965HDQ bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 1 36 ENCFF002DSN, ENCFF002DSO, ENCFF018NEO 1065548978 ENCODE Processing Pipeline d020d60100f6d5bb0196dddc1212871e https://www.encodeproject.org/files/ENCFF965HDQ/@@download/ENCFF965HDQ.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF748IRD bam alignments ENCSR498EVD ChIP-seq UBERON:0002113 kidney tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-02-17 ENCODE 2 36 ENCFF002DSP, ENCFF002DSV, ENCFF018NEO, ENCFF767WKB 961775121 ENCODE Processing Pipeline 4eade879b3249ef069e1c2a769715f97 https://www.encodeproject.org/files/ENCFF748IRD/@@download/ENCFF748IRD.bam mm10 released low read length, inconsistent platforms, mixed read lengths sequencing runs labeled as technical replicates ENCFF309KXO bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETT, ENCFF018NEO 1142624356 ENCODE Processing Pipeline e39bf321fb3cf394ca664f539f7ec7b9 https://www.encodeproject.org/files/ENCFF309KXO/@@download/ENCFF309KXO.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF637WOG bam alignments ENCSR969NXN ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETS, ENCFF018NEO 1024694702 ENCODE Processing Pipeline 867eebb48397ff5c5239c389cace0fa8 https://www.encodeproject.org/files/ENCFF637WOG/@@download/ENCFF637WOG.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF364OBA bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AFL, ENCFF018NEO 594546813 ENCODE Processing Pipeline 9c8d255092c1e11301a9a2907deb7b04 https://www.encodeproject.org/files/ENCFF364OBA/@@download/ENCFF364OBA.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF488YJW bam alignments ENCSR672ZXY ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AFS, ENCFF018NEO 781651632 ENCODE Processing Pipeline 58a9b32b2ba0699867e2e4f8caa6d44f https://www.encodeproject.org/files/ENCFF488YJW/@@download/ENCFF488YJW.bam mm10 released mixed read lengths, low read length, mild to moderate bottlenecking, low read depth ENCFF309VFP bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 507930741 ENCODE Processing Pipeline 27492d8ee0420582f68d5cbe940908df https://www.encodeproject.org/files/ENCFF309VFP/@@download/ENCFF309VFP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF990KEU bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 420242107 ENCODE Processing Pipeline e4db407620e24fe385b8c3252a6a945a https://www.encodeproject.org/files/ENCFF990KEU/@@download/ENCFF990KEU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF129MPS bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002EUO, ENCFF018NEO 1283344121 ENCODE Processing Pipeline 184a10d46aacbf0e0ae0030e2b0cb1bd https://www.encodeproject.org/files/ENCFF129MPS/@@download/ENCFF129MPS.bam mm10 released low read length ENCFF157IWD bam alignments ENCSR798VHN ChIP-seq UBERON:0000945 stomach tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002EUN, ENCFF018NEO 1094654064 ENCODE Processing Pipeline da3d0a1d487f2458aea4398895dc1200 https://www.encodeproject.org/files/ENCFF157IWD/@@download/ENCFF157IWD.bam mm10 released low read length ENCFF528WZN bam alignments ENCSR000ERT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus mouse-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIF, ENCFF018NEO 718699628 ENCODE Processing Pipeline 2e8a28e5078f4ab6373b2ac224e82972 https://www.encodeproject.org/files/ENCFF528WZN/@@download/ENCFF528WZN.bam mm10 released low read length, mild to moderate bottlenecking, low read depth ENCFF904LJW bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1139177408 ENCODE Processing Pipeline bb74e966b181203375ab8372e4cc6305 https://www.encodeproject.org/files/ENCFF904LJW/@@download/ENCFF904LJW.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF500FVS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 834951614 ENCODE Processing Pipeline 3e7d0e4701dce1a1718d12421c288350 https://www.encodeproject.org/files/ENCFF500FVS/@@download/ENCFF500FVS.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF277KGU bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 1 41 ENCFF001LYL, ENCFF018NEO 3585429493 ENCODE Processing Pipeline cc84b0ed907bc8529f0d04934a9b0a51 https://www.encodeproject.org/files/ENCFF277KGU/@@download/ENCFF277KGU.bam mm10 released inconsistent platforms control insufficient read depth ENCFF246UVF bam alignments ENCSR000DHP ChIP-seq CL:0000765 erythroblast primary cell Mus musculus H3K27me3-mouse DNA see document see document False 2012-04-30 ENCODE 2 41 ENCFF001LYN, ENCFF018NEO 2746930204 ENCODE Processing Pipeline 6cbbb06fb08be7dfd1e5217d1e48ab6a https://www.encodeproject.org/files/ENCFF246UVF/@@download/ENCFF246UVF.bam mm10 released inconsistent platforms control insufficient read depth ENCFF293NFT bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 2 45 ENCFF001ZHQ, ENCFF018NEO 1514755123 ENCODE Processing Pipeline c3bc554318c3ee9395962dab03c1ccb7 https://www.encodeproject.org/files/ENCFF293NFT/@@download/ENCFF293NFT.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF889PWY bam alignments ENCSR253QPK ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus H3K36me3-mouse DNA see document see document False 2014-02-11 ENCODE 1 45 ENCFF001ZHO, ENCFF018NEO 2180626925 ENCODE Processing Pipeline a8b9b5e8267399567c84505d4f19310e https://www.encodeproject.org/files/ENCFF889PWY/@@download/ENCFF889PWY.bam mm10 released low read length, control low read depth experiment not submitted to GEO insufficient read depth ENCFF946GAW bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETY, ENCFF018NEO 1097795374 ENCODE Processing Pipeline 554b137aaa7879f756c2014d42bf8edb https://www.encodeproject.org/files/ENCFF946GAW/@@download/ENCFF946GAW.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF260XKJ bam alignments ENCSR272XPJ ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K36me3-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETU, ENCFF018NEO 1074618555 ENCODE Processing Pipeline 4b5907aa4529acc4b89dcd28889c231e https://www.encodeproject.org/files/ENCFF260XKJ/@@download/ENCFF260XKJ.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF893QVU bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KXT, ENCFF018NEO 365889944 ENCODE Processing Pipeline 9905689b691f3c2470497deb61e66281 https://www.encodeproject.org/files/ENCFF893QVU/@@download/ENCFF893QVU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF786IBN bam alignments ENCSR000CCI ChIP-seq UBERON:0002370 thymus tissue Mus musculus H3K4me1-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KXR, ENCFF018NEO 312083787 ENCODE Processing Pipeline 3090dbfbecf23d7ee9717e0aa63841f5 https://www.encodeproject.org/files/ENCFF786IBN/@@download/ENCFF786IBN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF111OFQ bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 2 45 ENCFF001ZGM, ENCFF018NEO 2189748683 ENCODE Processing Pipeline 02195c52fd314490fc5dfe1831de1146 https://www.encodeproject.org/files/ENCFF111OFQ/@@download/ENCFF111OFQ.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF666VRA bam alignments ENCSR326ULS ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus Control-mouse DNA see document see document False 2014-02-07 ENCODE 1 45 ENCFF001ZGK, ENCFF018NEO 2250226951 ENCODE Processing Pipeline 8344abf6d2e8958c1d12a119c6cab477 https://www.encodeproject.org/files/ENCFF666VRA/@@download/ENCFF666VRA.bam mm10 released low read length experiment not submitted to GEO, insufficient read depth for broad peaks control ENCFF053HNE bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF121OIR, ENCFF528YYP 2904402719 ENCODE Processing Pipeline 648e88fdcf7d647758c94c4de7031aef https://www.encodeproject.org/files/ENCFF053HNE/@@download/ENCFF053HNE.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF681HVX bam alignments ENCSR061DPP ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K27me3-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF086ELT, ENCFF450OVU 3271256099 ENCODE Processing Pipeline 47e75f0cd7334e3bfb569b1ee3f9b212 https://www.encodeproject.org/files/ENCFF681HVX/@@download/ENCFF681HVX.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF884QXU bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KOO, ENCFF018NEO 569225295 ENCODE Processing Pipeline 0728788534f080c30bf9c64b66a9f4ce https://www.encodeproject.org/files/ENCFF884QXU/@@download/ENCFF884QXU.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF155RPN bam alignments ENCSR000CAQ ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me1-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KOJ, ENCFF018NEO 420236467 ENCODE Processing Pipeline 0f05ef837805668af00991c939f5b64c https://www.encodeproject.org/files/ENCFF155RPN/@@download/ENCFF155RPN.bam mm10 released low read length insufficient read depth, control insufficient read depth ENCFF111GKZ bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 2 36 ENCFF001KAK, ENCFF018NEO 498183957 ENCODE Processing Pipeline a6d5d4c0d95c814a38c817bf7aa7f88c https://www.encodeproject.org/files/ENCFF111GKZ/@@download/ENCFF111GKZ.bam mm10 released low read length, low read depth insufficient read depth ENCFF389ARL bam alignments ENCSR000CAT ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus Control-mouse DNA see document see document False 2011-06-24 ENCODE 1 36 ENCFF001KAM, ENCFF018NEO 382815863 ENCODE Processing Pipeline ebf30abd5b723201129c246180c8380c https://www.encodeproject.org/files/ENCFF389ARL/@@download/ENCFF389ARL.bam mm10 released low read length, low read depth insufficient read depth ENCFF722FAV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 570868881 ENCODE Processing Pipeline a3ac9cedddc1e7126c088890f1303c84 https://www.encodeproject.org/files/ENCFF722FAV/@@download/ENCFF722FAV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF947LVT bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 537885845 ENCODE Processing Pipeline 43e6c5d5e4eed3765cb73caa47e5d739 https://www.encodeproject.org/files/ENCFF947LVT/@@download/ENCFF947LVT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF337AUO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 608960718 ENCODE Processing Pipeline 572c3324b3d5a68fdd22a2ac432539a2 https://www.encodeproject.org/files/ENCFF337AUO/@@download/ENCFF337AUO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF321PYA bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 780037647 ENCODE Processing Pipeline b21167a2bd0b966d80efefefbdcc0435 https://www.encodeproject.org/files/ENCFF321PYA/@@download/ENCFF321PYA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF513TUI bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 125440369 ENCODE Processing Pipeline 570bcde637e1e9765a4b535fd7827647 https://www.encodeproject.org/files/ENCFF513TUI/@@download/ENCFF513TUI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF862RHC bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 663501920 ENCODE Processing Pipeline 2ec3cc49f5fc40b3d5d464664fa17b2d https://www.encodeproject.org/files/ENCFF862RHC/@@download/ENCFF862RHC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF679SCA bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 220445203 ENCODE Processing Pipeline 7f87615c9ed9f10d6d2fa538bc5cdd32 https://www.encodeproject.org/files/ENCFF679SCA/@@download/ENCFF679SCA.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF373DGP bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 432421217 ENCODE Processing Pipeline cf10987ec35daca88fe620d4add0d42a https://www.encodeproject.org/files/ENCFF373DGP/@@download/ENCFF373DGP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF583HQR bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 418344237 ENCODE Processing Pipeline beba160cb06b5c5f6d0466fcdc468f0f https://www.encodeproject.org/files/ENCFF583HQR/@@download/ENCFF583HQR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF624QGV bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 616161638 ENCODE Processing Pipeline b517bd64b4dff5ff23d0ffe40c31b852 https://www.encodeproject.org/files/ENCFF624QGV/@@download/ENCFF624QGV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF493AJV bam alignments ENCSR655SYB ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus Control-mouse DNA False 2016-02-05 ENCODE 1 50 ENCFF018NEO, ENCFF787LKE 812764449 ENCODE Processing Pipeline 113f2377dc92e9d2d3e147eddcf02e9f https://www.encodeproject.org/files/ENCFF493AJV/@@download/ENCFF493AJV.bam mm10 released low read depth ENCFF531KSN bam alignments ENCSR109LQX ChIP-seq UBERON:0000948 heart tissue Mus musculus Control-mouse DNA False 2016-02-02 ENCODE 1 50 ENCFF018NEO, ENCFF637HTW 1059085486 ENCODE Processing Pipeline 0b1731db35d90a211c806baf39ceeded https://www.encodeproject.org/files/ENCFF531KSN/@@download/ENCFF531KSN.bam mm10 released low read depth ENCFF606NRV bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AGN, ENCFF018NEO 871131016 ENCODE Processing Pipeline 08a5562804846a6ffac3667ebaa13dcf https://www.encodeproject.org/files/ENCFF606NRV/@@download/ENCFF606NRV.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF337BBR bam alignments ENCSR929GXP ChIP-seq UBERON:0001891 midbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGL, ENCFF018NEO, ENCFF948PVH 1102285473 ENCODE Processing Pipeline 724a5d08d9dee356bb2033a2a7281142 https://www.encodeproject.org/files/ENCFF337BBR/@@download/ENCFF337BBR.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF469YGT bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KAR, ENCFF018NEO 826445673 ENCODE Processing Pipeline bd9628c247b4ae53f0485f8762ba0b4e https://www.encodeproject.org/files/ENCFF469YGT/@@download/ENCFF469YGT.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF511LMN bam alignments ENCSR000CGH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K4me1-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KAQ, ENCFF018NEO 663645853 ENCODE Processing Pipeline 7bcd97bf3aff53ef3bcf8be16e458d0f https://www.encodeproject.org/files/ENCFF511LMN/@@download/ENCFF511LMN.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF754UEE bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 682441286 ENCODE Processing Pipeline 4c45757dee1937c09541e5130579e17b https://www.encodeproject.org/files/ENCFF754UEE/@@download/ENCFF754UEE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF815TDD bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 749079174 ENCODE Processing Pipeline c80bfb8a648b19ee92e630a9848305c5 https://www.encodeproject.org/files/ENCFF815TDD/@@download/ENCFF815TDD.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF680IVV bam alignments ENCSR000CBK ChIP-seq UBERON:0002113 kidney tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLM, ENCFF018NEO 513996540 ENCODE Processing Pipeline 22de7587aef0eaaa1d167feb514347c7 https://www.encodeproject.org/files/ENCFF680IVV/@@download/ENCFF680IVV.bam mm10 released low read length, control low read depth, low read depth ENCFF801WZN bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 625981038 ENCODE Processing Pipeline 9e4b19c458c706a3a528945741164285 https://www.encodeproject.org/files/ENCFF801WZN/@@download/ENCFF801WZN.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF369IFU bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 576855560 ENCODE Processing Pipeline 0a9db6f02ac4fda55d07db688def80bf https://www.encodeproject.org/files/ENCFF369IFU/@@download/ENCFF369IFU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF589SBN bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KDQ, ENCFF018NEO 322292687 ENCODE Processing Pipeline f0067bee7eb2b41b59296b7160293cc7 https://www.encodeproject.org/files/ENCFF589SBN/@@download/ENCFF589SBN.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF341ZQL bam alignments ENCSR000CDE ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus H3K27ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KDO, ENCFF018NEO 324064528 ENCODE Processing Pipeline 852269d9ec7edea044402294f20a7ea7 https://www.encodeproject.org/files/ENCFF341ZQL/@@download/ENCFF341ZQL.bam mm10 released low read length, inconsistent platforms insufficient read depth ENCFF235DGQ bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 1 50 ENCFF018NEO, ENCFF482OLO 1056893688 ENCODE Processing Pipeline 0bfc2cbb58b20a9385e6792d88b04c0f https://www.encodeproject.org/files/ENCFF235DGQ/@@download/ENCFF235DGQ.bam mm10 released inconsistent platforms ENCFF461RGB bam alignments ENCSR345HNA ChIP-seq UBERON:0001049 neural tube tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-17 ENCODE 2 50 ENCFF018NEO, ENCFF860HYW 1232995473 ENCODE Processing Pipeline 19cade27b3eb1f661513462d797e689f https://www.encodeproject.org/files/ENCFF461RGB/@@download/ENCFF461RGB.bam mm10 released inconsistent platforms ENCFF613ODH bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 2 50 ENCFF018NEO, ENCFF467NHM 1288302416 ENCODE Processing Pipeline 7dc369e22240e2a0410515656de361ae https://www.encodeproject.org/files/ENCFF613ODH/@@download/ENCFF613ODH.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF292IOB bam alignments ENCSR041KEJ ChIP-seq UBERON:0001890 forebrain tissue Mus musculus H3K9me3-mouse DNA SDS False 2016-03-16 ENCODE 1 50 ENCFF018NEO, ENCFF043EHP, ENCFF754FYS 1339256747 ENCODE Processing Pipeline d0587d933e80a455d4a22deb36004224 https://www.encodeproject.org/files/ENCFF292IOB/@@download/ENCFF292IOB.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF805OAP bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 1 36 ENCFF001KGW, ENCFF018NEO 575992194 ENCODE Processing Pipeline 72fa93e9dad59aecef4d33f3f18db14b https://www.encodeproject.org/files/ENCFF805OAP/@@download/ENCFF805OAP.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF025LWX bam alignments ENCSR000CEM ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K9ac-mouse DNA see document see document False 2012-03-28 ENCODE 2 36 ENCFF001KGZ, ENCFF018NEO 827375705 ENCODE Processing Pipeline 34b6356b00e527153bb2dbf06bd8e0f1 https://www.encodeproject.org/files/ENCFF025LWX/@@download/ENCFF025LWX.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length ENCFF960QYL bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 1 50 ENCFF001KBU, ENCFF018NEO 865803875 ENCODE Processing Pipeline 1716ca7da2b138934844dee16b9ee7ea https://www.encodeproject.org/files/ENCFF960QYL/@@download/ENCFF960QYL.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF941YPQ bam alignments ENCSR000CFL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus H3K36me3-mouse DNA see document see document False 2012-09-05 ENCODE 2 50 ENCFF001KBV, ENCFF018NEO 712492498 ENCODE Processing Pipeline 70b983697b5bef5216ce928bbf849ae9 https://www.encodeproject.org/files/ENCFF941YPQ/@@download/ENCFF941YPQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking insufficient read depth, control insufficient read depth ENCFF988ECO bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ESL, ENCFF018NEO, ENCFF900YLV 1414952627 ENCODE Processing Pipeline ab95e0355bed2d3744411305d2f2e47a https://www.encodeproject.org/files/ENCFF988ECO/@@download/ENCFF988ECO.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF013TON bam alignments ENCSR829YGD ChIP-seq UBERON:0000160 intestine tissue Mus musculus H3K4me1-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ESO, ENCFF018NEO, ENCFF083MCG 1461932127 ENCODE Processing Pipeline 5ec74c2bba0be771eab9a59f8e7676fd https://www.encodeproject.org/files/ENCFF013TON/@@download/ENCFF013TON.bam mm10 released low read length, control low read depth, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth, control insufficient read depth ENCFF020ZBU bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 2 36 ENCFF002ETL, ENCFF018NEO 697026193 ENCODE Processing Pipeline 470d7ac36f521edaeacf8656418f5ae6 https://www.encodeproject.org/files/ENCFF020ZBU/@@download/ENCFF020ZBU.bam mm10 released low read length, control low read depth, low read depth ENCFF082NQA bam alignments ENCSR154DTK ChIP-seq UBERON:0002048 lung tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-12-17 ENCODE 1 36 ENCFF002ETN, ENCFF018NEO 763593571 ENCODE Processing Pipeline 8c6805590dbbba5714608b9082b349ab https://www.encodeproject.org/files/ENCFF082NQA/@@download/ENCFF082NQA.bam mm10 released low read length, control low read depth, low read depth ENCFF149RJR bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 733180981 ENCODE Processing Pipeline c1c2bde27e1aabac1bf232c5368f927a https://www.encodeproject.org/files/ENCFF149RJR/@@download/ENCFF149RJR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF770XWC bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 725490839 ENCODE Processing Pipeline 17b6d1456ba76173f77936e8d66b8805 https://www.encodeproject.org/files/ENCFF770XWC/@@download/ENCFF770XWC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF791FHZ bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AHC, ENCFF018NEO 1110921478 ENCODE Processing Pipeline 2c581736ce10f3fff1ac1e79ccdbb534 https://www.encodeproject.org/files/ENCFF791FHZ/@@download/ENCFF791FHZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF895HAZ bam alignments ENCSR308TAV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K27me3-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AGW, ENCFF018NEO, ENCFF651IFB 916300653 ENCODE Processing Pipeline 168b6519bc2dd793f3bf3dad9472ada8 https://www.encodeproject.org/files/ENCFF895HAZ/@@download/ENCFF895HAZ.bam mm10 released low read length, mixed read lengths sequencing runs labeled as technical replicates insufficient read depth ENCFF300HPE bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AOZ, ENCFF018NEO 907753170 ENCODE Processing Pipeline dab74336aaf5052bee2c377c70061b9d https://www.encodeproject.org/files/ENCFF300HPE/@@download/ENCFF300HPE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF334ZFR bam alignments ENCSR721MSV ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AOV, ENCFF018NEO 926782774 ENCODE Processing Pipeline e2b8fd5de919b30f2be4b14fc25edebb https://www.encodeproject.org/files/ENCFF334ZFR/@@download/ENCFF334ZFR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, mixed read lengths ENCFF240ABD bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AOX, ENCFF018NEO 1282328866 ENCODE Processing Pipeline 36ef6278e8a9741cc8d2518a40639c30 https://www.encodeproject.org/files/ENCFF240ABD/@@download/ENCFF240ABD.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF241ILH bam alignments ENCSR966RAG ChIP-seq UBERON:0002107 liver tissue Mus musculus H3K9ac-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002APA, ENCFF018NEO 1182923512 ENCODE Processing Pipeline 97898f129f31b5e69b542a9666168063 https://www.encodeproject.org/files/ENCFF241ILH/@@download/ENCFF241ILH.bam mm10 released moderate library complexity, mild to moderate bottlenecking ENCFF908WTX bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 418935032 ENCODE Processing Pipeline ea78f282d8b778e49d9c799ec7e35b0c https://www.encodeproject.org/files/ENCFF908WTX/@@download/ENCFF908WTX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF450DQZ bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 670330387 ENCODE Processing Pipeline dd1964720745fe256d7c47c7d7bc5db9 https://www.encodeproject.org/files/ENCFF450DQZ/@@download/ENCFF450DQZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF400DYR bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 1 50 ENCFF018NEO, ENCFF034IFL, ENCFF143LQC 2781659638 ENCODE Processing Pipeline e4040af4b7af34a91728b365ca2121c1 https://www.encodeproject.org/files/ENCFF400DYR/@@download/ENCFF400DYR.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF467QLQ bam alignments ENCSR239TSZ ChIP-seq UBERON:0000948 heart tissue Mus musculus H3K36me3-mouse DNA SDS False 2015-06-23 ENCODE 2 50 ENCFF018NEO, ENCFF028VOD, ENCFF399GVU 2763383258 ENCODE Processing Pipeline 2b79a91015ead7273c956005bf446697 https://www.encodeproject.org/files/ENCFF467QLQ/@@download/ENCFF467QLQ.bam mm10 released mild to moderate bottlenecking, inconsistent platforms sequencing runs labeled as technical replicates ENCFF541FCH bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 925763687 ENCODE Processing Pipeline 76101cdd976df7bb157d79b5e682f31c https://www.encodeproject.org/files/ENCFF541FCH/@@download/ENCFF541FCH.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF379DPO bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 885383515 ENCODE Processing Pipeline 54a24c03ea292907db72a3ef2643bb29 https://www.encodeproject.org/files/ENCFF379DPO/@@download/ENCFF379DPO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF702TNM bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 50 ENCFF002AQQ, ENCFF018NEO 1329948211 ENCODE Processing Pipeline c3a22d37471027bfd54cf817b41cc6d9 https://www.encodeproject.org/files/ENCFF702TNM/@@download/ENCFF702TNM.bam mm10 released insufficient read depth for broad peaks control ENCFF453URD bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 50 ENCFF002AQR, ENCFF018NEO 1838171816 ENCODE Processing Pipeline e5aa6afd0884ef4e93422cb1f2f16aff https://www.encodeproject.org/files/ENCFF453URD/@@download/ENCFF453URD.bam mm10 released insufficient read depth for broad peaks control ENCFF955BDA bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002AQR, ENCFF018NEO 1414084817 ENCODE Processing Pipeline b311686c20c1b770c8d796acf2cda44c https://www.encodeproject.org/files/ENCFF955BDA/@@download/ENCFF955BDA.bam mm10 released insufficient read depth for broad peaks control ENCFF419KAT bam alignments ENCSR398NCK ChIP-seq UBERON:0001890 forebrain tissue Mus musculus Control-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002AQQ, ENCFF018NEO 1019724251 ENCODE Processing Pipeline c80e213c1156467d46749ad2f2acce2a https://www.encodeproject.org/files/ENCFF419KAT/@@download/ENCFF419KAT.bam mm10 released insufficient read depth for broad peaks control ENCFF433TDY bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 1 36 ENCFF002ALJ, ENCFF018NEO 772146292 ENCODE Processing Pipeline a9d2ec9ea442be4e1c19439e9d62025d https://www.encodeproject.org/files/ENCFF433TDY/@@download/ENCFF433TDY.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF720IYG bam alignments ENCSR771ILS ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus H3K4me2-mouse DNA SDS False 2014-06-30 ENCODE 2 36 ENCFF002ALQ, ENCFF018NEO 916738914 ENCODE Processing Pipeline edc6592cfa5e7386f4ca3fb468600865 https://www.encodeproject.org/files/ENCFF720IYG/@@download/ENCFF720IYG.bam mm10 released mixed read lengths, low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF544KYC bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 570358979 ENCODE Processing Pipeline 3402504a9e11be493ad493dd309e93db https://www.encodeproject.org/files/ENCFF544KYC/@@download/ENCFF544KYC.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF318YRW bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 818401125 ENCODE Processing Pipeline d658374ad999a7d07ca03dfb70bd3cf6 https://www.encodeproject.org/files/ENCFF318YRW/@@download/ENCFF318YRW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF669MCR bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 459532369 ENCODE Processing Pipeline 599cb1a665e5f29c75507040d8af913e https://www.encodeproject.org/files/ENCFF669MCR/@@download/ENCFF669MCR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF518YCG bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 554384203 ENCODE Processing Pipeline b525a40bd24734b54db816d35a0c4d6f https://www.encodeproject.org/files/ENCFF518YCG/@@download/ENCFF518YCG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF757ZBC bam alignments ENCSR000EUD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus rat-IgG-control-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVE, ENCFF018NEO 1203328275 ENCODE Processing Pipeline ffc393c8c7b8c36b4a0655e52b09d01b https://www.encodeproject.org/files/ENCFF757ZBC/@@download/ENCFF757ZBC.bam mm10 released low read length, mild to moderate bottlenecking ENCFF941EUJ bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 605535644 ENCODE Processing Pipeline 4e335fdcc8f6c040f798022553870625 https://www.encodeproject.org/files/ENCFF941EUJ/@@download/ENCFF941EUJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF044NRI bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 854358725 ENCODE Processing Pipeline e488a44bc42fcbecb8189751f7561a17 https://www.encodeproject.org/files/ENCFF044NRI/@@download/ENCFF044NRI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF025IEG bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 677545648 ENCODE Processing Pipeline 9a1d57802907fc3db32fa8ee1ad4e863 https://www.encodeproject.org/files/ENCFF025IEG/@@download/ENCFF025IEG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF678DXL bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 570828135 ENCODE Processing Pipeline b641bb9c6956e42b8e16e550b1dd1935 https://www.encodeproject.org/files/ENCFF678DXL/@@download/ENCFF678DXL.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF564ZUE bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 250447605 ENCODE Processing Pipeline d36a0e2f8a43c21b3fd3ff706d871243 https://www.encodeproject.org/files/ENCFF564ZUE/@@download/ENCFF564ZUE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF464NFI bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 267730430 ENCODE Processing Pipeline c0854275972f38d9223651eb1abe5fa7 https://www.encodeproject.org/files/ENCFF464NFI/@@download/ENCFF464NFI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF482OKL bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 626157010 ENCODE Processing Pipeline 368823dda68040e51560f087cb0bd8aa https://www.encodeproject.org/files/ENCFF482OKL/@@download/ENCFF482OKL.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF700OOX bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 693314323 ENCODE Processing Pipeline da950b7a3e3aaff8a0d2aba01c5b1356 https://www.encodeproject.org/files/ENCFF700OOX/@@download/ENCFF700OOX.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF700PLH bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 494259929 ENCODE Processing Pipeline c902a77cf7f8a330e8e0b4a6ef93b795 https://www.encodeproject.org/files/ENCFF700PLH/@@download/ENCFF700PLH.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF825JNS bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 588169998 ENCODE Processing Pipeline 0bae69cb610c88d8a8da065ef0d926a6 https://www.encodeproject.org/files/ENCFF825JNS/@@download/ENCFF825JNS.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF176CBY bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 2 50 ENCFF018NEO, ENCFF461IFM, ENCFF918OCJ 2661607560 ENCODE Processing Pipeline 762b797279b339120b63967fd23a959a https://www.encodeproject.org/files/ENCFF176CBY/@@download/ENCFF176CBY.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates ENCFF891TRS bam alignments ENCSR091WNX ChIP-seq UBERON:0012314 embryonic facial prominence tissue Mus musculus H3K4me1-mouse DNA SDS False 2015-11-03 ENCODE 1 50 ENCFF018NEO, ENCFF927ZWX 2883811162 ENCODE Processing Pipeline 411ac761ce5c427bea09fe8508fa6296 https://www.encodeproject.org/files/ENCFF891TRS/@@download/ENCFF891TRS.bam mm10 released inconsistent platforms sequencing runs labeled as technical replicates