ENCFF044IQW bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MTM, ENCFF018NEO 364920972 ENCODE Processing Pipeline 771b1c575a449a767f4b021d19dada63 https://www.encodeproject.org/files/ENCFF044IQW/@@download/ENCFF044IQW.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF407CBS bam alignments ENCSR000DIM ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MTO, ENCFF018NEO 335533230 ENCODE Processing Pipeline 898f04abbdc6dd072550bcde7c3fc965 https://www.encodeproject.org/files/ENCFF407CBS/@@download/ENCFF407CBS.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth ENCFF885KOQ bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGS, ENCFF018NEO 473145811 ENCODE Processing Pipeline de672145d6c570756ed9e92db6c04c1b https://www.encodeproject.org/files/ENCFF885KOQ/@@download/ENCFF885KOQ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF098DDX bam alignments ENCSR000CBM ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGT, ENCFF018NEO 603235031 ENCODE Processing Pipeline 319605b6214dcca1d392ebf410ab8f02 https://www.encodeproject.org/files/ENCFF098DDX/@@download/ENCFF098DDX.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth, control insufficient read depth ENCFF081EGW bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF978BAW 768147722 ENCODE Processing Pipeline 0439c0b05160aadeab7171194be651a1 https://www.encodeproject.org/files/ENCFF081EGW/@@download/ENCFF081EGW.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF627DYN bam alignments ENCSR041SMK ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF229RMI 807967242 ENCODE Processing Pipeline 0712832e76da92124e3c872cf04e5a7c https://www.encodeproject.org/files/ENCFF627DYN/@@download/ENCFF627DYN.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF796FRP bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOX, ENCFF018NEO 733007994 ENCODE Processing Pipeline bc6406cd26a4a6efa716e3b575721dab https://www.encodeproject.org/files/ENCFF796FRP/@@download/ENCFF796FRP.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF878FUZ bam alignments ENCSR000CBX ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOV, ENCFF018NEO 433815532 ENCODE Processing Pipeline bdbe1228ba154432285e481865455e0b https://www.encodeproject.org/files/ENCFF878FUZ/@@download/ENCFF878FUZ.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, low read depth ENCFF487MBJ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NEQ, ENCFF018NEO 944782207 ENCODE Processing Pipeline 6dbe349c984318d4c8ac029d746dd73a https://www.encodeproject.org/files/ENCFF487MBJ/@@download/ENCFF487MBJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF650EPZ bam alignments ENCSR000ERC ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus BHLHE40-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NEO, ENCFF018NEO 737187547 ENCODE Processing Pipeline cacacbdafbd2c36836cb2194c2d2196e https://www.encodeproject.org/files/ENCFF650EPZ/@@download/ENCFF650EPZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth duplicate lane review ENCFF199HTM bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MVY, ENCFF018NEO 1145017532 ENCODE Processing Pipeline 77427bb70e36a17d41bde2be9c7e7680 https://www.encodeproject.org/files/ENCFF199HTM/@@download/ENCFF199HTM.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF720JCR bam alignments ENCSR000DIP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MVS, ENCFF018NEO 643432288 ENCODE Processing Pipeline 99532c61cb2d0e26b1766a1363e7ab24 https://www.encodeproject.org/files/ENCFF720JCR/@@download/ENCFF720JCR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth ENCFF624WZX bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF712ARW 827048225 ENCODE Processing Pipeline 4984abc24d5bbb7abbc426b59c8aa4b5 https://www.encodeproject.org/files/ENCFF624WZX/@@download/ENCFF624WZX.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF049QHC bam alignments ENCSR677HXC ChIP-seq UBERON:0001890 forebrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF538QDO 932950273 ENCODE Processing Pipeline 58bf61d6d3703e7ac42ee16f63afb549 https://www.encodeproject.org/files/ENCFF049QHC/@@download/ENCFF049QHC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF951HWD bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF299GTA 802123234 ENCODE Processing Pipeline 0f641534e8c230c05c6ef7a72527df05 https://www.encodeproject.org/files/ENCFF951HWD/@@download/ENCFF951HWD.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF298QFB bam alignments ENCSR777VNA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF042TOB 1008468872 ENCODE Processing Pipeline 043847caf9a1174e107b33b9f3b8afdf https://www.encodeproject.org/files/ENCFF298QFB/@@download/ENCFF298QFB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF397CLT bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIL, ENCFF018NEO 742227762 ENCODE Processing Pipeline 229f2fcdca6c662d439ac21aa6c592a9 https://www.encodeproject.org/files/ENCFF397CLT/@@download/ENCFF397CLT.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF715HFI bam alignments ENCSR000ERR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIG, ENCFF018NEO 678795791 ENCODE Processing Pipeline c3a09cd2667f0c242c0a825eb861d734 https://www.encodeproject.org/files/ENCFF715HFI/@@download/ENCFF715HFI.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF239NFK bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NRW, ENCFF018NEO 555939549 ENCODE Processing Pipeline 8af9e7bb063d487bba993ebf75ee0fd4 https://www.encodeproject.org/files/ENCFF239NFK/@@download/ENCFF239NFK.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF127ZPW bam alignments ENCSR000ETB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NRT, ENCFF018NEO 626469364 ENCODE Processing Pipeline 457d60da20e2e91ad91639f1dc0a146b https://www.encodeproject.org/files/ENCFF127ZPW/@@download/ENCFF127ZPW.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF361ECJ bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOC, ENCFF018NEO 540591748 ENCODE Processing Pipeline dd491191aaf972da8cb965427c8c1297 https://www.encodeproject.org/files/ENCFF361ECJ/@@download/ENCFF361ECJ.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF853JQH bam alignments ENCSR000ERW ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOF, ENCFF018NEO 992373682 ENCODE Processing Pipeline 1116376e83a5920afb778509239059df https://www.encodeproject.org/files/ENCFF853JQH/@@download/ENCFF853JQH.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF504VVD bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBN, ENCFF018NEO 615637478 ENCODE Processing Pipeline 2decde58005fe65dc00f7181ffd512b7 https://www.encodeproject.org/files/ENCFF504VVD/@@download/ENCFF504VVD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF730KCK bam alignments ENCSR000ESD ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBP, ENCFF018NEO 611197160 ENCODE Processing Pipeline 7325815783e39cead9dedee37db26270 https://www.encodeproject.org/files/ENCFF730KCK/@@download/ENCFF730KCK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF553QQS bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MNV, ENCFF018NEO 926297627 ENCODE Processing Pipeline 99fa0839ea5c83dd0a5f8266038b7e5d https://www.encodeproject.org/files/ENCFF553QQS/@@download/ENCFF553QQS.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF585RBR bam alignments ENCSR000DIS ChIP-seq EFO:0002034 G1E stem cell Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MNP, ENCFF018NEO 534736853 ENCODE Processing Pipeline 1f724a5e005653f6845584d2583c5264 https://www.encodeproject.org/files/ENCFF585RBR/@@download/ENCFF585RBR.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF131PLT bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGG, ENCFF018NEO 562408943 ENCODE Processing Pipeline dbd4fedfe0f411370eede0734eae9e51 https://www.encodeproject.org/files/ENCFF131PLT/@@download/ENCFF131PLT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF449KFK bam alignments ENCSR000ERM ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGE, ENCFF018NEO 565439135 ENCODE Processing Pipeline 7c11067724dcab9ca6209c59cae0ac52 https://www.encodeproject.org/files/ENCFF449KFK/@@download/ENCFF449KFK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF985CUW bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NQU, ENCFF018NEO 610485955 ENCODE Processing Pipeline 8131bd3f2960fe0de7233c097b28d7b6 https://www.encodeproject.org/files/ENCFF985CUW/@@download/ENCFF985CUW.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF284CFB bam alignments ENCSR000ETE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day CTCF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NQW, ENCFF018NEO 610945438 ENCODE Processing Pipeline 23a94bbc142d3cb34c911c39da132a7b https://www.encodeproject.org/files/ENCFF284CFB/@@download/ENCFF284CFB.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF671WIS bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LGH, ENCFF018NEO 400255827 ENCODE Processing Pipeline 00c98166791f20d9cde0244725fec6a4 https://www.encodeproject.org/files/ENCFF671WIS/@@download/ENCFF671WIS.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF977LTN bam alignments ENCSR000CBL ChIP-seq UBERON:0002371 bone marrow tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LGI, ENCFF018NEO 976371376 ENCODE Processing Pipeline 87c806fad99da0a5dde553c0806efa8c https://www.encodeproject.org/files/ENCFF977LTN/@@download/ENCFF977LTN.bam mm10 released low read length, control low read depth insufficient read depth, control insufficient read depth ENCFF924UTR bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NZS, ENCFF018NEO 552183629 ENCODE Processing Pipeline 0ab1bb640a289d746bbd0f9a795a733a https://www.encodeproject.org/files/ENCFF924UTR/@@download/ENCFF924UTR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF403JXO bam alignments ENCSR000ETS ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RAD21-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NZU, ENCFF018NEO 695761121 ENCODE Processing Pipeline de03dbb7d45c4e1ea7191c1801b343c4 https://www.encodeproject.org/files/ENCFF403JXO/@@download/ENCFF403JXO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF816XGO bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 1 41 ENCFF001MTY, ENCFF018NEO 3165515136 ENCODE Processing Pipeline 2911085887f82d6721cb2243a0671d3d https://www.encodeproject.org/files/ENCFF816XGO/@@download/ENCFF816XGO.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF556CHE bam alignments ENCSR000DHD ChIP-seq CL:0000556 megakaryocyte primary cell Mus musculus FLI1-mouse DNA see document see document False 2012-08-07 ENCODE 2 41 ENCFF001MTZ, ENCFF018NEO 3894800981 ENCODE Processing Pipeline d6258b64429604f68da5d757bebebee2 https://www.encodeproject.org/files/ENCFF556CHE/@@download/ENCFF556CHE.bam mm10 released low read length, inconsistent platforms, mixed read lengths NTR biosample, biological replicates with identical biosample ENCFF117RLB bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMB, ENCFF018NEO 715236493 ENCODE Processing Pipeline 8b3b75bdedf391e6e76868046d6bdf11 https://www.encodeproject.org/files/ENCFF117RLB/@@download/ENCFF117RLB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF069HIE bam alignments ENCSR000EQQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NLZ, ENCFF018NEO 759339058 ENCODE Processing Pipeline 857be1ae1b7470936b5fdcb741671cd4 https://www.encodeproject.org/files/ENCFF069HIE/@@download/ENCFF069HIE.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF241CAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSI, ENCFF018NEO 488592776 ENCODE Processing Pipeline 57d8cf856774ce53024ab4c7cb8f9d85 https://www.encodeproject.org/files/ENCFF241CAL/@@download/ENCFF241CAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF877FAL bam alignments ENCSR000DID ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSD, ENCFF018NEO 448035213 ENCODE Processing Pipeline fa4de8a1b7ea0c211b98c2587dc53a7c https://www.encodeproject.org/files/ENCFF877FAL/@@download/ENCFF877FAL.bam mm10 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF790KRK bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPA, ENCFF018NEO 254614431 ENCODE Processing Pipeline e1ec01bb207eb33d693da82e2890c587 https://www.encodeproject.org/files/ENCFF790KRK/@@download/ENCFF790KRK.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF150WRV bam alignments ENCSR000CFH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPK, ENCFF018NEO 250266703 ENCODE Processing Pipeline 7dcffb4a6f8c061558dc42a1b97cec12 https://www.encodeproject.org/files/ENCFF150WRV/@@download/ENCFF150WRV.bam mm10 released low read length, mild to moderate bottlenecking insufficient read depth, severe bottlenecking, poor library complexity, control insufficient read depth ENCFF360FFU bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548JVO 835431405 ENCODE Processing Pipeline 1e724e319d509081e6a1af03cc92de0e https://www.encodeproject.org/files/ENCFF360FFU/@@download/ENCFF360FFU.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF541LRE bam alignments ENCSR765RPR ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF938GAS 1263858982 ENCODE Processing Pipeline 456dba2a36b15d845363c2522d0c85fb https://www.encodeproject.org/files/ENCFF541LRE/@@download/ENCFF541LRE.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF882VKU bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOE, ENCFF018NEO 1243830020 ENCODE Processing Pipeline 769466936a01a64c0358cf6db3dab3db https://www.encodeproject.org/files/ENCFF882VKU/@@download/ENCFF882VKU.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF951IPP bam alignments ENCSR000DIC ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOM, ENCFF018NEO 3507576585 ENCODE Processing Pipeline 3f7172bd8823d6cf6986e411dee9c1ad https://www.encodeproject.org/files/ENCFF951IPP/@@download/ENCFF951IPP.bam mm10 released mixed read lengths, low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample ENCFF206APZ bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAB, ENCFF018NEO 388544918 ENCODE Processing Pipeline 51f2648eb0e121be2e73668e87f7a558 https://www.encodeproject.org/files/ENCFF206APZ/@@download/ENCFF206APZ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF251WMT bam alignments ENCSR000ESJ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus UBTF-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NZZ, ENCFF018NEO 384417298 ENCODE Processing Pipeline 0690ff1011df2eb824e7a23413a21fd5 https://www.encodeproject.org/files/ENCFF251WMT/@@download/ENCFF251WMT.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF969YRT bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NIS, ENCFF018NEO 659552769 ENCODE Processing Pipeline 1a19668d7e8269b91f6647ea3ccbc6d3 https://www.encodeproject.org/files/ENCFF969YRT/@@download/ENCFF969YRT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF752EYZ bam alignments ENCSR000EQT ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NIP, ENCFF018NEO 586188844 ENCODE Processing Pipeline fa8f55d35fe8e22b98e517b661062965 https://www.encodeproject.org/files/ENCFF752EYZ/@@download/ENCFF752EYZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF265GQV bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPN, ENCFF018NEO 315183523 ENCODE Processing Pipeline 6d8270688bf2441c23374d824d88410d https://www.encodeproject.org/files/ENCFF265GQV/@@download/ENCFF265GQV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF824OPU bam alignments ENCSR000CFI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPR, ENCFF018NEO 292966100 ENCODE Processing Pipeline 86340943f67e7c298b28e687e12496cb https://www.encodeproject.org/files/ENCFF824OPU/@@download/ENCFF824OPU.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth, poor library complexity, control insufficient read depth ENCFF536XZS bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NUY, ENCFF018NEO 558104343 ENCODE Processing Pipeline 2a01744a664a8d90ec6baf5379130353 https://www.encodeproject.org/files/ENCFF536XZS/@@download/ENCFF536XZS.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF859PAZ bam alignments ENCSR000ESY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day MAFK-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NVA, ENCFF018NEO 487219227 ENCODE Processing Pipeline db92754b42ace5ad7077962b9276d5ad https://www.encodeproject.org/files/ENCFF859PAZ/@@download/ENCFF859PAZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF555JZF bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF682HTS 912899218 ENCODE Processing Pipeline df09e1404dd1ce3a4c0b40dbd7a5778c https://www.encodeproject.org/files/ENCFF555JZF/@@download/ENCFF555JZF.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF117NUU bam alignments ENCSR450KVW ChIP-seq UBERON:0000945 stomach tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF671VKD 1000565370 ENCODE Processing Pipeline 75f917563cd9668f886f79fd94372d67 https://www.encodeproject.org/files/ENCFF117NUU/@@download/ENCFF117NUU.bam mm10 released antibody characterized with exemption biological replicates with identical biosample ENCFF516FZI bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LMV, ENCFF018NEO 519238766 ENCODE Processing Pipeline 6142c7e75e870d7c8f68d406e5c6fbfa https://www.encodeproject.org/files/ENCFF516FZI/@@download/ENCFF516FZI.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF617FBG bam alignments ENCSR000CBU ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LMX, ENCFF018NEO 433686094 ENCODE Processing Pipeline ab27875b64bf10edf2aebdfc822a2b66 https://www.encodeproject.org/files/ENCFF617FBG/@@download/ENCFF617FBG.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, low read depth insufficient read depth ENCFF986OKG bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNH, ENCFF018NEO 164858010 ENCODE Processing Pipeline 9effa8ed0e16b5901dab0e3e9155ba25 https://www.encodeproject.org/files/ENCFF986OKG/@@download/ENCFF986OKG.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF351NWX bam alignments ENCSR000CBR ChIP-seq UBERON:0002107 liver tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNR, ENCFF018NEO 437122527 ENCODE Processing Pipeline fe49ddc32ea2bf94abde9dce6316562e https://www.encodeproject.org/files/ENCFF351NWX/@@download/ENCFF351NWX.bam mm10 released low read length, control low read depth insufficient read depth extremely low read depth ENCFF142TWS bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NWR, ENCFF018NEO 587664771 ENCODE Processing Pipeline b00357078102d3a0f9dec73bcc32a2f1 https://www.encodeproject.org/files/ENCFF142TWS/@@download/ENCFF142TWS.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF538JPD bam alignments ENCSR000ESK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NWP, ENCFF018NEO 521375721 ENCODE Processing Pipeline 8562f0075ca06766370a2ece9bf64388 https://www.encodeproject.org/files/ENCFF538JPD/@@download/ENCFF538JPD.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF209XZQ bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPP, ENCFF018NEO 733770678 ENCODE Processing Pipeline 4fc9f869082dd3a8580586f666a88217 https://www.encodeproject.org/files/ENCFF209XZQ/@@download/ENCFF209XZQ.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF178CJO bam alignments ENCSR000DIN ChIP-seq EFO:0002034 G1E stem cell Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MPN, ENCFF018NEO 506585997 ENCODE Processing Pipeline 2ea2fda4b76b94993b4e9ec0232bf10d https://www.encodeproject.org/files/ENCFF178CJO/@@download/ENCFF178CJO.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF450RZA bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 2 45 ENCFF002ARO, ENCFF018NEO 1988137415 ENCODE Processing Pipeline 43e644c19c622915082510f8b2f8199a https://www.encodeproject.org/files/ENCFF450RZA/@@download/ENCFF450RZA.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF684OCY bam alignments ENCSR392DGA ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus POU5F1-mouse DNA see document see document False 2014-03-17 ENCODE 1 45 ENCFF002ARM, ENCFF018NEO 2470498456 ENCODE Processing Pipeline c878852ee6e7f82ec432f20e50496c9e https://www.encodeproject.org/files/ENCFF684OCY/@@download/ENCFF684OCY.bam mm10 released low read length, borderline replicate concordance experiment not submitted to GEO ENCFF427PQW bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWI, ENCFF018NEO 439870312 ENCODE Processing Pipeline 57083d80ac771a7696ffacdfabe8675f https://www.encodeproject.org/files/ENCFF427PQW/@@download/ENCFF427PQW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF148BGJ bam alignments ENCSR000DHZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MWO, ENCFF018NEO 1174575879 ENCODE Processing Pipeline 68acd36887909bd8ae3597772976d9a0 https://www.encodeproject.org/files/ENCFF148BGJ/@@download/ENCFF148BGJ.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, mixed read lengths, low read depth, inconsistent platforms, low read length ENCFF061WVR bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIY, ENCFF018NEO 449095333 ENCODE Processing Pipeline 86018524d1abbaffcf30826a612cdcea https://www.encodeproject.org/files/ENCFF061WVR/@@download/ENCFF061WVR.bam mm10 released low read length insufficient read depth ENCFF285RBT bam alignments ENCSR000CCB ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIQ, ENCFF018NEO 208725304 ENCODE Processing Pipeline 4576fb73270b4e92a1eb9d262944317a https://www.encodeproject.org/files/ENCFF285RBT/@@download/ENCFF285RBT.bam mm10 released low read length insufficient read depth ENCFF247SZV bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKK, ENCFF018NEO 1205781081 ENCODE Processing Pipeline b47532b1c7381ba3221be3db444836f7 https://www.encodeproject.org/files/ENCFF247SZV/@@download/ENCFF247SZV.bam mm10 released low read length, inconsistent target of control experiment ENCFF717CZQ bam alignments ENCSR000ERI ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKH, ENCFF018NEO 977972685 ENCODE Processing Pipeline dac2bd715902766aee0af291e4d30622 https://www.encodeproject.org/files/ENCFF717CZQ/@@download/ENCFF717CZQ.bam mm10 released low read length, inconsistent target of control experiment ENCFF265AMZ bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LKY, ENCFF018NEO 332320622 ENCODE Processing Pipeline 573fbb302715f284b0e2d4c90d6dbf0f https://www.encodeproject.org/files/ENCFF265AMZ/@@download/ENCFF265AMZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF147QPL bam alignments ENCSR000CBJ ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LLE, ENCFF018NEO 463563626 ENCODE Processing Pipeline 046232a0d2bb8b0ec357f41292d6ed1b https://www.encodeproject.org/files/ENCFF147QPL/@@download/ENCFF147QPL.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth, insufficient read length ENCFF604WSX bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFO, ENCFF018NEO 836383482 ENCODE Processing Pipeline b63eb2d07cca445f32af232802b9d6f1 https://www.encodeproject.org/files/ENCFF604WSX/@@download/ENCFF604WSX.bam mm10 released low read length, inconsistent target of control experiment ENCFF344JSI bam alignments ENCSR000ERF ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFP, ENCFF018NEO 850474686 ENCODE Processing Pipeline 37cd6fececc39eaecf25515f3dfdfdd9 https://www.encodeproject.org/files/ENCFF344JSI/@@download/ENCFF344JSI.bam mm10 released low read length, inconsistent target of control experiment ENCFF604NSV bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKT, ENCFF018NEO 362456918 ENCODE Processing Pipeline 63a07c288fcde35a7e370989461aa01d https://www.encodeproject.org/files/ENCFF604NSV/@@download/ENCFF604NSV.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF042BFD bam alignments ENCSR000CBS ChIP-seq UBERON:0000948 heart tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKS, ENCFF018NEO 477222118 ENCODE Processing Pipeline b6725f9b1cecba0a259251280378c3d6 https://www.encodeproject.org/files/ENCFF042BFD/@@download/ENCFF042BFD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF134IUG bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 30 ENCFF001LRL, ENCFF018NEO 449852591 ENCODE Processing Pipeline a18aa199b0076b0ca150def79b8a3ab1 https://www.encodeproject.org/files/ENCFF134IUG/@@download/ENCFF134IUG.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF514JHP bam alignments ENCSR000CBZ ChIP-seq UBERON:0002106 spleen tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 30 ENCFF001LRT, ENCFF018NEO 499875300 ENCODE Processing Pipeline a65cff310e8311005d644653ce8987fc https://www.encodeproject.org/files/ENCFF514JHP/@@download/ENCFF514JHP.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF724VSZ bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NNG, ENCFF018NEO 330227818 ENCODE Processing Pipeline 3f6221f057eab42d2496ef8b0a5467dc https://www.encodeproject.org/files/ENCFF724VSZ/@@download/ENCFF724VSZ.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF226MZU bam alignments ENCSR000ERX ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNI, ENCFF018NEO 954118431 ENCODE Processing Pipeline 06e8d98901209aa8b5a1718e9214cdf4 https://www.encodeproject.org/files/ENCFF226MZU/@@download/ENCFF226MZU.bam mm10 released low read length, inconsistent platforms, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF702BLC bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NEW, ENCFF018NEO 713227360 ENCODE Processing Pipeline dbd2c5609d047e8c1a2429babd3712fe https://www.encodeproject.org/files/ENCFF702BLC/@@download/ENCFF702BLC.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF413NFE bam alignments ENCSR000EQV ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NEY, ENCFF018NEO 623110394 ENCODE Processing Pipeline 0b393f3741b720708e4efa8a02967e1a https://www.encodeproject.org/files/ENCFF413NFE/@@download/ENCFF413NFE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF240VBR bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MSV, ENCFF018NEO 599735261 ENCODE Processing Pipeline f2b99ba6bb9a17175d389cc0c53d4c67 https://www.encodeproject.org/files/ENCFF240VBR/@@download/ENCFF240VBR.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF515WNW bam alignments ENCSR000DIF ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 3 36 ENCFF001MTE, ENCFF018NEO 676725902 ENCODE Processing Pipeline d4f99a104babf80d436da7d8b77a7c2b https://www.encodeproject.org/files/ENCFF515WNW/@@download/ENCFF515WNW.bam mm10 released low read length, inconsistent platforms, low read depth missing raw data in replicate, biological replicates with identical biosample ENCFF241INM bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLT, ENCFF018NEO 741873023 ENCODE Processing Pipeline aa61c1bb71a6d5d3194d84852ad3769e https://www.encodeproject.org/files/ENCFF241INM/@@download/ENCFF241INM.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF022TYB bam alignments ENCSR000ERG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLH, ENCFF018NEO 603222105 ENCODE Processing Pipeline 477dadbe291b8975b74702ab9a7cdc90 https://www.encodeproject.org/files/ENCFF022TYB/@@download/ENCFF022TYB.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF812TBN bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF671DZT 807345030 ENCODE Processing Pipeline 70a5235089f57eea2245dc746106137f https://www.encodeproject.org/files/ENCFF812TBN/@@download/ENCFF812TBN.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF906IPW bam alignments ENCSR104QEN ChIP-seq UBERON:0000945 stomach tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF685COX 657128090 ENCODE Processing Pipeline 3ff3f8762053189bc31bc5b5deb96fe3 https://www.encodeproject.org/files/ENCFF906IPW/@@download/ENCFF906IPW.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF538PLQ bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF390DAS 809379754 ENCODE Processing Pipeline 58facf9f934b37fd7e94374e3e20ef2c https://www.encodeproject.org/files/ENCFF538PLQ/@@download/ENCFF538PLQ.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF669IDD bam alignments ENCSR143WOK ChIP-seq UBERON:0002113 kidney tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF837KZY 637979380 ENCODE Processing Pipeline c20d065504a33aa9a664a9004e1e3f57 https://www.encodeproject.org/files/ENCFF669IDD/@@download/ENCFF669IDD.bam mm10 released moderate library complexity, mild to moderate bottlenecking, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF145YHD bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OAZ, ENCFF018NEO 691803605 ENCODE Processing Pipeline d5967270938634d2c43b9e70780fb8b6 https://www.encodeproject.org/files/ENCFF145YHD/@@download/ENCFF145YHD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF945QLN bam alignments ENCSR000ESF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZC3H11A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OAX, ENCFF018NEO 604631045 ENCODE Processing Pipeline 4de3b81ce969c0711f5644ab890f7bb2 https://www.encodeproject.org/files/ENCFF945QLN/@@download/ENCFF945QLN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF164BCI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF323QPQ 1145124183 ENCODE Processing Pipeline 1e9280a53f99f767bd2c49c49d0a6432 https://www.encodeproject.org/files/ENCFF164BCI/@@download/ENCFF164BCI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF262NGI bam alignments ENCSR985ZTV ChIP-seq UBERON:0001891 midbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF160DPX 818813553 ENCODE Processing Pipeline bd23e3d0832e0da66339261d251459ee https://www.encodeproject.org/files/ENCFF262NGI/@@download/ENCFF262NGI.bam mm10 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF676SED bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF803MRJ 815126823 ENCODE Processing Pipeline 709c251b972bc0a6fd186ecd78d7ec81 https://www.encodeproject.org/files/ENCFF676SED/@@download/ENCFF676SED.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF844ZSH bam alignments ENCSR397RHW ChIP-seq UBERON:0002107 liver tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF096EGJ 733279921 ENCODE Processing Pipeline 92902cb0ae4464000bebf544ca3cf3db https://www.encodeproject.org/files/ENCFF844ZSH/@@download/ENCFF844ZSH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF052QVR bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001OBX, ENCFF018NEO 537013533 ENCODE Processing Pipeline e6cec2c0ec5ad60b9f3d78a19f536662 https://www.encodeproject.org/files/ENCFF052QVR/@@download/ENCFF052QVR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF494MWJ bam alignments ENCSR000ESE ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001OBV, ENCFF018NEO 564649400 ENCODE Processing Pipeline 8a67f3a6b9339f817436e9a9bb1ba11d https://www.encodeproject.org/files/ENCFF494MWJ/@@download/ENCFF494MWJ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF468ABY bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NXB, ENCFF018NEO 657483071 ENCODE Processing Pipeline c1a89b3306e8f3b9fdeccc940df7ccbe https://www.encodeproject.org/files/ENCFF468ABY/@@download/ENCFF468ABY.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF763EMQ bam alignments ENCSR000ETU ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NELFE-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NXD, ENCFF018NEO 699656272 ENCODE Processing Pipeline d34ed154a78f32a114e58bbebbe0fc41 https://www.encodeproject.org/files/ENCFF763EMQ/@@download/ENCFF763EMQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF852WML bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NFV, ENCFF018NEO 665237378 ENCODE Processing Pipeline dab97deefdab40c36c7016aca145672e https://www.encodeproject.org/files/ENCFF852WML/@@download/ENCFF852WML.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF803ESS bam alignments ENCSR000EQZ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NFX, ENCFF018NEO 859759657 ENCODE Processing Pipeline 491c7a6e3187808d0f25965e4e99cfc2 https://www.encodeproject.org/files/ENCFF803ESS/@@download/ENCFF803ESS.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment ENCFF464ZPC bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF773SFT 864620000 ENCODE Processing Pipeline a92e2b5ebdcfcb46e7a947c387c931a8 https://www.encodeproject.org/files/ENCFF464ZPC/@@download/ENCFF464ZPC.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF039PBK bam alignments ENCSR002ZAG ChIP-seq UBERON:0000160 intestine tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF414VXY 829916391 ENCODE Processing Pipeline 3f762d3d24129708c0728da1ca245b69 https://www.encodeproject.org/files/ENCFF039PBK/@@download/ENCFF039PBK.bam mm10 released antibody characterized with exemption, moderate library complexity, mild to moderate bottlenecking, control low read depth, low read depth NTR biosample, biological replicates with identical biosample ENCFF526KRJ bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQF, ENCFF018NEO 388115545 ENCODE Processing Pipeline dc970721525d375b902d870408467535 https://www.encodeproject.org/files/ENCFF526KRJ/@@download/ENCFF526KRJ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF097KLO bam alignments ENCSR000CDY ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQA, ENCFF018NEO 266750728 ENCODE Processing Pipeline 9048ed5dc8b9bb401c775fe63e5a88ef https://www.encodeproject.org/files/ENCFF097KLO/@@download/ENCFF097KLO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking insufficient read depth ENCFF356ALS bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NRO, ENCFF018NEO 523433771 ENCODE Processing Pipeline fc25feda3d87c364c0e19dda4036a045 https://www.encodeproject.org/files/ENCFF356ALS/@@download/ENCFF356ALS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF079MWN bam alignments ENCSR000ETQ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CTCF-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NRQ, ENCFF018NEO 725071316 ENCODE Processing Pipeline ab1e4725ea22d1e34eb1bac2b14e2501 https://www.encodeproject.org/files/ENCFF079MWN/@@download/ENCFF079MWN.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF572OOM bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MLG, ENCFF018NEO 721210553 ENCODE Processing Pipeline 48caea704afd9d07d65699d70cfa16b7 https://www.encodeproject.org/files/ENCFF572OOM/@@download/ENCFF572OOM.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF647VRB bam alignments ENCSR000DIU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MLF, ENCFF018NEO 542081189 ENCODE Processing Pipeline 1b563fa83cf177b0aa0cb86f4fa85be1 https://www.encodeproject.org/files/ENCFF647VRB/@@download/ENCFF647VRB.bam mm10 released low read length, inconsistent platforms, low read depth ENCFF335SKO bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NSL, ENCFF018NEO 593402730 ENCODE Processing Pipeline f61383b89828a5518beaf715fe7f16da https://www.encodeproject.org/files/ENCFF335SKO/@@download/ENCFF335SKO.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF899YSW bam alignments ENCSR000ETY ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NSK, ENCFF018NEO 643421780 ENCODE Processing Pipeline b8f3f25faa17d0c9e9b5879f43377202 https://www.encodeproject.org/files/ENCFF899YSW/@@download/ENCFF899YSW.bam mm10 released borderline replicate concordance, low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF882LCZ bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWN, ENCFF018NEO 787576613 ENCODE Processing Pipeline 1b90a78a1bab67d1b9a27dd79fc8aff4 https://www.encodeproject.org/files/ENCFF882LCZ/@@download/ENCFF882LCZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF967BIA bam alignments ENCSR000ETN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWM, ENCFF018NEO 748085534 ENCODE Processing Pipeline b87d4bcd5983069eefba01f5a1bf4b48 https://www.encodeproject.org/files/ENCFF967BIA/@@download/ENCFF967BIA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF293AUO bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIC, ENCFF018NEO 905656227 ENCODE Processing Pipeline d326cb709ade95966e3e65ccc63d165b https://www.encodeproject.org/files/ENCFF293AUO/@@download/ENCFF293AUO.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF803DOV bam alignments ENCSR000ERB ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NIA, ENCFF018NEO 963917869 ENCODE Processing Pipeline 50498abb57016ec11e2eff4dc4c7dcda https://www.encodeproject.org/files/ENCFF803DOV/@@download/ENCFF803DOV.bam mm10 released low read length, inconsistent target of control experiment, borderline replicate concordance ENCFF271WNO bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHB, ENCFF018NEO 887607689 ENCODE Processing Pipeline dd670eda7de552e256f5455cc74a5b95 https://www.encodeproject.org/files/ENCFF271WNO/@@download/ENCFF271WNO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF552KJL bam alignments ENCSR000EQU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NGZ, ENCFF018NEO 785473760 ENCODE Processing Pipeline 22e41dfd0cc88ef28ef1ab0cdf9defe1 https://www.encodeproject.org/files/ENCFF552KJL/@@download/ENCFF552KJL.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF609VXJ bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSQ, ENCFF018NEO 713201107 ENCODE Processing Pipeline c81a15bd1992c2b93c2215e6cb7c8a45 https://www.encodeproject.org/files/ENCFF609VXJ/@@download/ENCFF609VXJ.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF839CIT bam alignments ENCSR000ESM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus KAT2A-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NSS, ENCFF018NEO 1009588005 ENCODE Processing Pipeline 29ceb40f94999a433512f3f2232e4af1 https://www.encodeproject.org/files/ENCFF839CIT/@@download/ENCFF839CIT.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF296RQE bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF797QNA 744187819 ENCODE Processing Pipeline c64db4250d7d72fae588cef8104b13e9 https://www.encodeproject.org/files/ENCFF296RQE/@@download/ENCFF296RQE.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF844MYB bam alignments ENCSR982LJQ ChIP-seq UBERON:0002107 liver tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF051PSQ 677244030 ENCODE Processing Pipeline 321923a573d1d8fd575f0e37f8780d3e https://www.encodeproject.org/files/ENCFF844MYB/@@download/ENCFF844MYB.bam mm10 released antibody characterized with exemption, low read depth biological replicates with identical biosample ENCFF669TDH bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF320KGQ 861135818 ENCODE Processing Pipeline 06492bff37c8cc8b15dafefc8d0d556b https://www.encodeproject.org/files/ENCFF669TDH/@@download/ENCFF669TDH.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF748CWC bam alignments ENCSR150RGT ChIP-seq UBERON:0002028 hindbrain tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF024MXS 1106721174 ENCODE Processing Pipeline 46516b80c0e373adce07483fda8b1f8c https://www.encodeproject.org/files/ENCFF748CWC/@@download/ENCFF748CWC.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF426YVP bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLB, ENCFF018NEO 774278149 ENCODE Processing Pipeline 236270dfa40cac52b57e7b8796122888 https://www.encodeproject.org/files/ENCFF426YVP/@@download/ENCFF426YVP.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF173QJM bam alignments ENCSR000ERK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLC, ENCFF018NEO 742358878 ENCODE Processing Pipeline 82f466cac9aa497b28e9b2ef5ce58e80 https://www.encodeproject.org/files/ENCFF173QJM/@@download/ENCFF173QJM.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF215ELT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MXC, ENCFF018NEO 1356812453 ENCODE Processing Pipeline 75c1928dbd2e6d482ac1225602aa9997 https://www.encodeproject.org/files/ENCFF215ELT/@@download/ENCFF215ELT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF334CYT bam alignments ENCSR000DIA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TAL1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MWX, ENCFF018NEO 1201426132 ENCODE Processing Pipeline 8f9bdd97a5dd54b465201561a94a534a https://www.encodeproject.org/files/ENCFF334CYT/@@download/ENCFF334CYT.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths ENCFF400HUF bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSJ, ENCFF018NEO 84582263 ENCODE Processing Pipeline 18413e52acf78c1e2555cf61a82f5702 https://www.encodeproject.org/files/ENCFF400HUF/@@download/ENCFF400HUF.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF757SUN bam alignments ENCSR000CDZ ChIP-seq UBERON:0002370 thymus tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSL, ENCFF018NEO 308947255 ENCODE Processing Pipeline 5f4d44da85b63066d46815cf08cfe33c https://www.encodeproject.org/files/ENCFF757SUN/@@download/ENCFF757SUN.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth, borderline replicate concordance insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF390ZQV bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF310VOQ 747012839 ENCODE Processing Pipeline 281880213c6a21380a29653b3ddb1c64 https://www.encodeproject.org/files/ENCFF390ZQV/@@download/ENCFF390ZQV.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF371TUB bam alignments ENCSR491NUM ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF464DYI 776530302 ENCODE Processing Pipeline e448db6f7692c2f59352bfe6b409de7d https://www.encodeproject.org/files/ENCFF371TUB/@@download/ENCFF371TUB.bam mm10 released control low read depth, antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF825KCM bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKE, ENCFF018NEO 441844616 ENCODE Processing Pipeline 3fa493bdb8ab2426f4967d0870b52178 https://www.encodeproject.org/files/ENCFF825KCM/@@download/ENCFF825KCM.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF015RVC bam alignments ENCSR000ERQ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKF, ENCFF018NEO 611716522 ENCODE Processing Pipeline 5a5a1d22defa4d692dd0ae3690f4bc5f https://www.encodeproject.org/files/ENCFF015RVC/@@download/ENCFF015RVC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF842AGG bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NVW, ENCFF018NEO 557404609 ENCODE Processing Pipeline 082ee9c5e110298e08badecab65b9af5 https://www.encodeproject.org/files/ENCFF842AGG/@@download/ENCFF842AGG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF694NOV bam alignments ENCSR000ESL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAZ-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NVZ, ENCFF018NEO 596562091 ENCODE Processing Pipeline 6e2d8f77d0036201f73c0c6faa7a5307 https://www.encodeproject.org/files/ENCFF694NOV/@@download/ENCFF694NOV.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF373MQG bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LQU, ENCFF018NEO 543166914 ENCODE Processing Pipeline 67d87bcdc3f8d10a09771a801059a7bc https://www.encodeproject.org/files/ENCFF373MQG/@@download/ENCFF373MQG.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF894XUQ bam alignments ENCSR000CEE ChIP-seq UBERON:0002108 small intestine tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQW, ENCFF018NEO 1412738132 ENCODE Processing Pipeline 8accab6420c95f2dbd6a346bcce20a0c https://www.encodeproject.org/files/ENCFF894XUQ/@@download/ENCFF894XUQ.bam mm10 released mild to moderate bottlenecking, low read depth, control low read depth, inconsistent platforms, low read length, moderate library complexity ENCFF927UUZ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJU, ENCFF018NEO 754294637 ENCODE Processing Pipeline c14a9d5f0e4b62be5177749d8da5736a https://www.encodeproject.org/files/ENCFF927UUZ/@@download/ENCFF927UUZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF316DIJ bam alignments ENCSR000ERE ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MXI1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJR, ENCFF018NEO 698509644 ENCODE Processing Pipeline 5dd6c6f86d1527d5248128e8b9fe185c https://www.encodeproject.org/files/ENCFF316DIJ/@@download/ENCFF316DIJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF905YWG bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 1 50 ENCFF001ICX, ENCFF018NEO 452391859 ENCODE Processing Pipeline ff1f81ad9b9f53cea1c356ce05020d53 https://www.encodeproject.org/files/ENCFF905YWG/@@download/ENCFF905YWG.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF307YNO bam alignments ENCSR000AIB ChIP-seq CL:0000187 myocyte in vitro differentiated cells Mus musculus CEBPB-mouse DNA see document see document False 2011-11-23 ENCODE 2 50 ENCFF001IDC, ENCFF018NEO 557062983 ENCODE Processing Pipeline 8343fb22ba8ad20ee322754e4eec2f7a https://www.encodeproject.org/files/ENCFF307YNO/@@download/ENCFF307YNO.bam mm10 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF998UML bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSK, ENCFF018NEO 560825794 ENCODE Processing Pipeline 20194d266192acaa9963175bd50d390a https://www.encodeproject.org/files/ENCFF998UML/@@download/ENCFF998UML.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF748PAR bam alignments ENCSR000CEG ChIP-seq UBERON:0000473 testis tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LSN, ENCFF018NEO 544126312 ENCODE Processing Pipeline 860d2d16bc7a0defafb5df1bef72e4b9 https://www.encodeproject.org/files/ENCFF748PAR/@@download/ENCFF748PAR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth ENCFF427KEM bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NJO, ENCFF018NEO 587971203 ENCODE Processing Pipeline b101ed07ed6be0471a88178ed0ce7d49 https://www.encodeproject.org/files/ENCFF427KEM/@@download/ENCFF427KEM.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF325VBN bam alignments ENCSR000EQS ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus GABPA-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NJM, ENCFF018NEO 785943349 ENCODE Processing Pipeline 904931ab9c2578e9b518f611c52a086c https://www.encodeproject.org/files/ENCFF325VBN/@@download/ENCFF325VBN.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF667KDK bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LHO, ENCFF018NEO 390827538 ENCODE Processing Pipeline 46a09226371fc8b456d154ca69e3ff3d https://www.encodeproject.org/files/ENCFF667KDK/@@download/ENCFF667KDK.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF661ZQB bam alignments ENCSR000CBN ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHN, ENCFF018NEO 662499534 ENCODE Processing Pipeline aef33f2133a7a32cc9c4534f001e2dd8 https://www.encodeproject.org/files/ENCFF661ZQB/@@download/ENCFF661ZQB.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, control low read depth, low read length, moderate library complexity insufficient read depth ENCFF788RAA bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NPB, ENCFF018NEO 503106824 ENCODE Processing Pipeline 9aba8664ae071273f4cb4f7f4b771c94 https://www.encodeproject.org/files/ENCFF788RAA/@@download/ENCFF788RAA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF084ZDT bam alignments ENCSR000ESN ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NPD, ENCFF018NEO 590045056 ENCODE Processing Pipeline 12775a58f71c6b87ae9048364d93d03a https://www.encodeproject.org/files/ENCFF084ZDT/@@download/ENCFF084ZDT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF616NLO bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LRX, ENCFF018NEO 523847669 ENCODE Processing Pipeline 0d24fd5a9f513c7d8b136e94e568710a https://www.encodeproject.org/files/ENCFF616NLO/@@download/ENCFF616NLO.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF752ONZ bam alignments ENCSR000CEF ChIP-seq UBERON:0000473 testis tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LRW, ENCFF018NEO 225050731 ENCODE Processing Pipeline 0d055c08c8bffff597817541925cf0a6 https://www.encodeproject.org/files/ENCFF752ONZ/@@download/ENCFF752ONZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth control insufficient read depth, insufficient read depth, insufficient replicate concordance ENCFF271SRD bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NGO, ENCFF018NEO 604624795 ENCODE Processing Pipeline 8354f6ab2ca30740b13479953b9a2151 https://www.encodeproject.org/files/ENCFF271SRD/@@download/ENCFF271SRD.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF006JXP bam alignments ENCSR000ERN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NGC, ENCFF018NEO 667604428 ENCODE Processing Pipeline 3698b803fc362be8ebd058fdee8c483f https://www.encodeproject.org/files/ENCFF006JXP/@@download/ENCFF006JXP.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth ENCFF049TYL bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NQQ, ENCFF018NEO 654147597 ENCODE Processing Pipeline eccd2ee851894adc26cda5975b3f2f39 https://www.encodeproject.org/files/ENCFF049TYL/@@download/ENCFF049TYL.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF869RHU bam alignments ENCSR000EUA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYC-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NQP, ENCFF018NEO 522033050 ENCODE Processing Pipeline 4b3c60033a201b96a3d22898cfc652f1 https://www.encodeproject.org/files/ENCFF869RHU/@@download/ENCFF869RHU.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF643WRW bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NQE, ENCFF018NEO 567582897 ENCODE Processing Pipeline c413884bf99de47fdaa5d87fbb87d335 https://www.encodeproject.org/files/ENCFF643WRW/@@download/ENCFF643WRW.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF658OJL bam alignments ENCSR000ESI ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus RCOR1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NQH, ENCFF018NEO 840000890 ENCODE Processing Pipeline 81b0d93f4d1a9eccb15e48ded261b63e https://www.encodeproject.org/files/ENCFF658OJL/@@download/ENCFF658OJL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF920RHB bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MRQ, ENCFF018NEO 382537031 ENCODE Processing Pipeline 6fb949942f1610e0fabcdd606b43b7d9 https://www.encodeproject.org/files/ENCFF920RHB/@@download/ENCFF920RHB.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF440GRL bam alignments ENCSR000DIR ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour CTCF-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRN, ENCFF018NEO 531488649 ENCODE Processing Pipeline 85c27eb8bb732b45034cc2635b40c9e6 https://www.encodeproject.org/files/ENCFF440GRL/@@download/ENCFF440GRL.bam mm10 released mixed read lengths, low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient read depth ENCFF641XAS bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NXS, ENCFF018NEO 620174059 ENCODE Processing Pipeline 76a47e3e25f269888d33f03a9c9bff1a https://www.encodeproject.org/files/ENCFF641XAS/@@download/ENCFF641XAS.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF847DDB bam alignments ENCSR000ETG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day POLR2A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NXQ, ENCFF018NEO 652472029 ENCODE Processing Pipeline f5f51870bab4fbc18c10bf65978d95b1 https://www.encodeproject.org/files/ENCFF847DDB/@@download/ENCFF847DDB.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF580NNY bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIJ, ENCFF018NEO 238802631 ENCODE Processing Pipeline 3934281b6c25559c374873f08c087174 https://www.encodeproject.org/files/ENCFF580NNY/@@download/ENCFF580NNY.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF119HGR bam alignments ENCSR000CBO ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIK, ENCFF018NEO 299602650 ENCODE Processing Pipeline 60b05f6f90e9cc40e7b3119af7e14f4e https://www.encodeproject.org/files/ENCFF119HGR/@@download/ENCFF119HGR.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF489IXK bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MPE, ENCFF018NEO 683706521 ENCODE Processing Pipeline ff41985420ab1869a31e5b154555ca56 https://www.encodeproject.org/files/ENCFF489IXK/@@download/ENCFF489IXK.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF629YOP bam alignments ENCSR000DIG ChIP-seq EFO:0002034 G1E stem cell Mus musculus POLR2AphosphoS5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOZ, ENCFF018NEO 602674955 ENCODE Processing Pipeline 0cf452b42775ff1ef5840b8659d56602 https://www.encodeproject.org/files/ENCFF629YOP/@@download/ENCFF629YOP.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF722PAU bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LTA, ENCFF018NEO 281299857 ENCODE Processing Pipeline 72ab40ad0a6bcc0d092fc292e20e8dd0 https://www.encodeproject.org/files/ENCFF722PAU/@@download/ENCFF722PAU.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF046UOO bam alignments ENCSR000CEA ChIP-seq UBERON:0002370 thymus tissue Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LSZ, ENCFF018NEO 159001883 ENCODE Processing Pipeline 7e74c739453cd06924490c3663dc23a9 https://www.encodeproject.org/files/ENCFF046UOO/@@download/ENCFF046UOO.bam mm10 released low read length, mild to moderate bottlenecking, moderate library complexity, control low read depth insufficient read depth, poor library complexity, control insufficient read depth extremely low read depth ENCFF906LVL bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYQ, ENCFF018NEO 801826294 ENCODE Processing Pipeline a47fda7bd69d364dc655bfd785738738 https://www.encodeproject.org/files/ENCFF906LVL/@@download/ENCFF906LVL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF956XJP bam alignments ENCSR000ETM ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYM, ENCFF018NEO 729332962 ENCODE Processing Pipeline 0541210e16251f367d3cc52573fd3afd https://www.encodeproject.org/files/ENCFF956XJP/@@download/ENCFF956XJP.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF180YAD bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJV, ENCFF018NEO 327606791 ENCODE Processing Pipeline 47cb3f34235d3ca0c05be0f55f5d386c https://www.encodeproject.org/files/ENCFF180YAD/@@download/ENCFF180YAD.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF198ZVJ bam alignments ENCSR000CBI ChIP-seq UBERON:0000948 heart tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 33 ENCFF001LJW, ENCFF018NEO 338293825 ENCODE Processing Pipeline 7f7dfc13b916f2c4da41a2c147a74b9f https://www.encodeproject.org/files/ENCFF198ZVJ/@@download/ENCFF198ZVJ.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth, mixed read lengths insufficient read depth, insufficient read length ENCFF333YHD bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LKP, ENCFF018NEO 451660793 ENCODE Processing Pipeline 46ebd0c9194175f50b671618fbe62bce https://www.encodeproject.org/files/ENCFF333YHD/@@download/ENCFF333YHD.bam mm10 released low read length, control low read depth insufficient read depth ENCFF059ZFK bam alignments ENCSR000CCA ChIP-seq UBERON:0000948 heart tissue Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LKQ, ENCFF018NEO 370145426 ENCODE Processing Pipeline 17653b7ab6ec7f44dce53339652d0a73 https://www.encodeproject.org/files/ENCFF059ZFK/@@download/ENCFF059ZFK.bam mm10 released low read length, control low read depth insufficient read depth ENCFF434UMB bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMY, ENCFF018NEO 578305981 ENCODE Processing Pipeline 9a1ee1dce97f6ce5a9cfb63a4794099d https://www.encodeproject.org/files/ENCFF434UMB/@@download/ENCFF434UMB.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF346RIK bam alignments ENCSR000EQP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZMIZ1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NNA, ENCFF018NEO 675903221 ENCODE Processing Pipeline 826ee8b8ac6f5809558a9fe7edc18ef3 https://www.encodeproject.org/files/ENCFF346RIK/@@download/ENCFF346RIK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF524MMG bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYS, ENCFF018NEO 597649095 ENCODE Processing Pipeline 4db7a883ac01906dbdec5dde29dc2069 https://www.encodeproject.org/files/ENCFF524MMG/@@download/ENCFF524MMG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF755CWT bam alignments ENCSR000ETT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day RAD21-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYW, ENCFF018NEO 618654297 ENCODE Processing Pipeline 80fe7cf10cedae9caf422e9d9fe0b02e https://www.encodeproject.org/files/ENCFF755CWT/@@download/ENCFF755CWT.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF436KYT bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 1 45 ENCFF001ZQP, ENCFF018NEO 1890769372 ENCODE Processing Pipeline 84bea82626b5ab83813c8acd85c8d55c https://www.encodeproject.org/files/ENCFF436KYT/@@download/ENCFF436KYT.bam mm10 released low read length experiment not submitted to GEO ENCFF890GFD bam alignments ENCSR362VNF ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus CTCF-mouse DNA see document see document False 2014-02-24 ENCODE 2 45 ENCFF001ZQR, ENCFF018NEO 1689616186 ENCODE Processing Pipeline f4dc9c3f7ccb262d9f4600499a9ace36 https://www.encodeproject.org/files/ENCFF890GFD/@@download/ENCFF890GFD.bam mm10 released low read length experiment not submitted to GEO ENCFF371ZUN bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJD, ENCFF018NEO 1164189550 ENCODE Processing Pipeline ae5d1b8a2fb2e0f55cd7755d82cd60fd https://www.encodeproject.org/files/ENCFF371ZUN/@@download/ENCFF371ZUN.bam mm10 released low read length, inconsistent target of control experiment ENCFF459CWX bam alignments ENCSR000ERL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NIZ, ENCFF018NEO 892949903 ENCODE Processing Pipeline fa836d267ad4d73feb8309d0ad79438e https://www.encodeproject.org/files/ENCFF459CWX/@@download/ENCFF459CWX.bam mm10 released low read length, inconsistent target of control experiment ENCFF797ITD bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 2 50 ENCFF018NEO, ENCFF548AXA 1104924953 ENCODE Processing Pipeline 1716bf24a4baf3e476d0164666199601 https://www.encodeproject.org/files/ENCFF797ITD/@@download/ENCFF797ITD.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF163GGA bam alignments ENCSR527DME ChIP-seq UBERON:0002048 lung tissue Mus musculus EP300-mouse DNA False 2016-05-17 ENCODE 1 50 ENCFF018NEO, ENCFF482ODC 1335940972 ENCODE Processing Pipeline ff3cfea2057b2d1497ef2366b38e2203 https://www.encodeproject.org/files/ENCFF163GGA/@@download/ENCFF163GGA.bam mm10 released mild to moderate bottlenecking, control low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF676OVP bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJO, ENCFF018NEO 483241675 ENCODE Processing Pipeline 5d4b05a603dfa20e0b7fc2c80d0c4600 https://www.encodeproject.org/files/ENCFF676OVP/@@download/ENCFF676OVP.bam mm10 released low read length insufficient read depth ENCFF358NVC bam alignments ENCSR000CCD ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus EP300-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJN, ENCFF018NEO 440923333 ENCODE Processing Pipeline 455a3990b965d834478436cb375c7125 https://www.encodeproject.org/files/ENCFF358NVC/@@download/ENCFF358NVC.bam mm10 released low read length insufficient read depth ENCFF139PUK bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001OBJ, ENCFF018NEO 914833363 ENCODE Processing Pipeline ff8e5444cd996cb93d449abe19ff9c40 https://www.encodeproject.org/files/ENCFF139PUK/@@download/ENCFF139PUK.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF824KNT bam alignments ENCSR000ETW ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001OBC, ENCFF018NEO 367747463 ENCODE Processing Pipeline de52d18700cf4f5ab0232f54128a7151 https://www.encodeproject.org/files/ENCFF824KNT/@@download/ENCFF824KNT.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample insufficient read depth ENCFF918MLI bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVI, ENCFF018NEO 774266929 ENCODE Processing Pipeline 663d15eaf247b3aa9c5f666dd0aa2ca3 https://www.encodeproject.org/files/ENCFF918MLI/@@download/ENCFF918MLI.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF713QES bam alignments ENCSR000ETK ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAFK-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVG, ENCFF018NEO 629207786 ENCODE Processing Pipeline abc63885441e89d6fba8d29a843d3a6f https://www.encodeproject.org/files/ENCFF713QES/@@download/ENCFF713QES.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786IOU bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001OAL, ENCFF018NEO 624554444 ENCODE Processing Pipeline 174917d639368c4625ef5d459ba81277 https://www.encodeproject.org/files/ENCFF786IOU/@@download/ENCFF786IOU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF170PTO bam alignments ENCSR000EUB ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001OAK, ENCFF018NEO 610372530 ENCODE Processing Pipeline ed21ab15d964b02e675ebde2c1caf9b0 https://www.encodeproject.org/files/ENCFF170PTO/@@download/ENCFF170PTO.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF202TYU bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NJG, ENCFF018NEO 630006638 ENCODE Processing Pipeline 59fea24ecf173545cad05e19d4a614f3 https://www.encodeproject.org/files/ENCFF202TYU/@@download/ENCFF202TYU.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF174MFL bam alignments ENCSR000ERD ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NELFE-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NJE, ENCFF018NEO 685199691 ENCODE Processing Pipeline a9c0deaa5880b710483fc38dd018c7c1 https://www.encodeproject.org/files/ENCFF174MFL/@@download/ENCFF174MFL.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF206KOY bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NLK, ENCFF018NEO 560173312 ENCODE Processing Pipeline 06d591b56d0b454534d7568dd308ea33 https://www.encodeproject.org/files/ENCFF206KOY/@@download/ENCFF206KOY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF185QAZ bam alignments ENCSR000EQX ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus UBTF-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NLM, ENCFF018NEO 448496441 ENCODE Processing Pipeline afd49e4e479241ca8855d9c0c667f951 https://www.encodeproject.org/files/ENCFF185QAZ/@@download/ENCFF185QAZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF052YOZ bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NYA, ENCFF018NEO 743891732 ENCODE Processing Pipeline 40fc1e0dcdbef80a72eceff5e43d617a https://www.encodeproject.org/files/ENCFF052YOZ/@@download/ENCFF052YOZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF689KZB bam alignments ENCSR000ETV ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NYE, ENCFF018NEO 1181345622 ENCODE Processing Pipeline dd4dd81cad60f7ea5c86d10ad81370cc https://www.encodeproject.org/files/ENCFF689KZB/@@download/ENCFF689KZB.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF724HAL bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 2 36 ENCFF001NQG, ENCFF018NEO 582059911 ENCODE Processing Pipeline 93f6e20ba4bc06b5964cbe2e00735f8f https://www.encodeproject.org/files/ENCFF724HAL/@@download/ENCFF724HAL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF329AUN bam alignments ENCSR000ETR ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MYB-mouse DNA see document see document False 2011-02-07 ENCODE 1 36 ENCFF001NQA, ENCFF018NEO 551292962 ENCODE Processing Pipeline 0b70041bc9599b608f822fa56de8e527 https://www.encodeproject.org/files/ENCFF329AUN/@@download/ENCFF329AUN.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF574SPR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF332NMV 986212519 ENCODE Processing Pipeline fcc8d750a649e2bdcf3324c117bc5f65 https://www.encodeproject.org/files/ENCFF574SPR/@@download/ENCFF574SPR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF504LSR bam alignments ENCSR418SBY ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF657QHM 1063146494 ENCODE Processing Pipeline 1746eff7aba0cda39cdf462da537a0f0 https://www.encodeproject.org/files/ENCFF504LSR/@@download/ENCFF504LSR.bam mm10 released antibody characterized with exemption NTR biosample, biological replicates with identical biosample ENCFF292MTG bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NYF, ENCFF018NEO 551306438 ENCODE Processing Pipeline 633b2fe046f4700ae7f2a3d7226c93e9 https://www.encodeproject.org/files/ENCFF292MTG/@@download/ENCFF292MTG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF202HIS bam alignments ENCSR000EUC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus POLR2A-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NYK, ENCFF018NEO 729223411 ENCODE Processing Pipeline 418117eae79323fda1ba05fd232c4b99 https://www.encodeproject.org/files/ENCFF202HIS/@@download/ENCFF202HIS.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF991YKF bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LPM, ENCFF018NEO 201792282 ENCODE Processing Pipeline 83a881f355236d32ffd74101e2fb2fcb https://www.encodeproject.org/files/ENCFF991YKF/@@download/ENCFF991YKF.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF385VIZ bam alignments ENCSR000CDX ChIP-seq UBERON:0002264 olfactory bulb tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LPS, ENCFF018NEO 711917724 ENCODE Processing Pipeline 97516ef8397618e4604908cc73ac5a62 https://www.encodeproject.org/files/ENCFF385VIZ/@@download/ENCFF385VIZ.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth extremely low read depth ENCFF835GIQ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 30 ENCFF001LQH, ENCFF018NEO 145463677 ENCODE Processing Pipeline 82af3942a86f7569f5580282181702e3 https://www.encodeproject.org/files/ENCFF835GIQ/@@download/ENCFF835GIQ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF023ESZ bam alignments ENCSR000CED ChIP-seq UBERON:0002108 small intestine tissue Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LQI, ENCFF018NEO 934355228 ENCODE Processing Pipeline 81837bcd74b867e1eadb35adde0efa69 https://www.encodeproject.org/files/ENCFF023ESZ/@@download/ENCFF023ESZ.bam mm10 released mild to moderate bottlenecking, mixed read lengths, low read depth, inconsistent platforms, control low read depth, low read length, moderate library complexity insufficient read length, insufficient replicate concordance extremely low read depth ENCFF181MQO bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MRX, ENCFF018NEO 1126157125 ENCODE Processing Pipeline e5ebad477c6748970909ceca1e030d6b https://www.encodeproject.org/files/ENCFF181MQO/@@download/ENCFF181MQO.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF033GTE bam alignments ENCSR000DIQ ChIP-seq EFO:0002055 G1E-ER4 stem cell Mus musculus 17β-estradiol 10 nM 24 hour GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MSL, ENCFF018NEO 3556656968 ENCODE Processing Pipeline 43bf54aaf8a6fb50818cec92c04546df https://www.encodeproject.org/files/ENCFF033GTE/@@download/ENCFF033GTE.bam mm10 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF293JBU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LJH, ENCFF018NEO 163556066 ENCODE Processing Pipeline 8fb31befa0c23d19c7365bb89c34b322 https://www.encodeproject.org/files/ENCFF293JBU/@@download/ENCFF293JBU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF129EIU bam alignments ENCSR000CCC ChIP-seq EFO:0005483 ES-Bruce4 stem cell Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LJQ, ENCFF018NEO 435974478 ENCODE Processing Pipeline 3de61622b63827f88f2ea2a60a2860bf https://www.encodeproject.org/files/ENCFF129EIU/@@download/ENCFF129EIU.bam mm10 released low read length, borderline replicate concordance insufficient read depth ENCFF519PSU bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NXH, ENCFF018NEO 664293173 ENCODE Processing Pipeline a8835cbd7ee728bf48c5a1a6577973cd https://www.encodeproject.org/files/ENCFF519PSU/@@download/ENCFF519PSU.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF786RTQ bam alignments ENCSR000ETP ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus EP300-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NXM, ENCFF018NEO 772677950 ENCODE Processing Pipeline 36232cfe11097e844d76e0eb563c7bc8 https://www.encodeproject.org/files/ENCFF786RTQ/@@download/ENCFF786RTQ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF499OEU bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 1 48 ENCFF002ADK, ENCFF018NEO 1361538084 ENCODE Processing Pipeline 8b81e8e11912bb703fbade9817beee30 https://www.encodeproject.org/files/ENCFF499OEU/@@download/ENCFF499OEU.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF464OJW bam alignments ENCSR194GNY ChIP-seq UBERON:0002107 liver tissue Mus musculus GATA4-mouse DNA see document see document False 2014-03-14 ENCODE 2 48 ENCFF002ADM, ENCFF018NEO 1485166553 ENCODE Processing Pipeline 610792b19b7adcda3a97a95da9dbc80b https://www.encodeproject.org/files/ENCFF464OJW/@@download/ENCFF464OJW.bam mm10 released low read length, mild to moderate bottlenecking experiment not submitted to GEO, biological replicates with identical biosample insufficient replicate concordance ENCFF313WTS bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NHM, ENCFF018NEO 545405032 ENCODE Processing Pipeline 7028bc3ea4ddbb1877e69e54743170be https://www.encodeproject.org/files/ENCFF313WTS/@@download/ENCFF313WTS.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF328JKM bam alignments ENCSR000ERU ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus E2F4-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NHQ, ENCFF018NEO 650937340 ENCODE Processing Pipeline 87c542ece54f9c525e8d3ef88564f6c4 https://www.encodeproject.org/files/ENCFF328JKM/@@download/ENCFF328JKM.bam mm10 released low read length, inconsistent target of control experiment, low read depth insufficient replicate concordance ENCFF993AWK bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NPS, ENCFF018NEO 815286351 ENCODE Processing Pipeline 970892e3a06b6d25295289e3ee7c4cf3 https://www.encodeproject.org/files/ENCFF993AWK/@@download/ENCFF993AWK.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF329RLT bam alignments ENCSR000ETO ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus CHD2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NPW, ENCFF018NEO 942812396 ENCODE Processing Pipeline 2f4ce88ee59d3c9c6549bbacb85980c8 https://www.encodeproject.org/files/ENCFF329RLT/@@download/ENCFF329RLT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF090OZS bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 2 50 ENCFF018NEO, ENCFF472KEL 799264007 ENCODE Processing Pipeline fcdcce95bdb388d29eecd53730dc4c1a https://www.encodeproject.org/files/ENCFF090OZS/@@download/ENCFF090OZS.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF604FDV bam alignments ENCSR677SIH ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA False 2016-05-18 ENCODE 1 50 ENCFF018NEO, ENCFF524BAT 896015737 ENCODE Processing Pipeline 90ac4307f906cd7895038a40865dd7e3 https://www.encodeproject.org/files/ENCFF604FDV/@@download/ENCFF604FDV.bam mm10 released antibody characterized with exemption, low read depth NTR biosample, biological replicates with identical biosample ENCFF483OCA bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NLX, ENCFF018NEO 491617440 ENCODE Processing Pipeline e16a61f83024852e70e71d7907c1a5a4 https://www.encodeproject.org/files/ENCFF483OCA/@@download/ENCFF483OCA.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF539ZGP bam alignments ENCSR000ERP ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TBP-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NLV, ENCFF018NEO 516170173 ENCODE Processing Pipeline 03477dc8b3bd720654a63c7d8aedd892 https://www.encodeproject.org/files/ENCFF539ZGP/@@download/ENCFF539ZGP.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF597HPS bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LNT, ENCFF018NEO 382783589 ENCODE Processing Pipeline ee7679aba57565384a9287ebcb8e687b https://www.encodeproject.org/files/ENCFF597HPS/@@download/ENCFF597HPS.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF654LDN bam alignments ENCSR000CBV ChIP-seq UBERON:0002048 lung tissue Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LNS, ENCFF018NEO 353968665 ENCODE Processing Pipeline 40a133f777ed535db675c746eddcfcdd https://www.encodeproject.org/files/ENCFF654LDN/@@download/ENCFF654LDN.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth ENCFF311BIT bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 1 41 ENCFF001MMN, ENCFF018NEO 1315058962 ENCODE Processing Pipeline 4e1dba33685dae1acbfb4570cca127c1 https://www.encodeproject.org/files/ENCFF311BIT/@@download/ENCFF311BIT.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF377TAN bam alignments ENCSR000DIL ChIP-seq CL:0000765 erythroblast primary cell Mus musculus GATA1-mouse DNA see document see document False 2012-02-13 ENCODE 2 41 ENCFF001MMR, ENCFF018NEO 2922459392 ENCODE Processing Pipeline eef8f458818f28713f7d4524b25e1751 https://www.encodeproject.org/files/ENCFF377TAN/@@download/ENCFF377TAN.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF203OQV bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NON, ENCFF018NEO 660029638 ENCODE Processing Pipeline 914816e14beddad500d2962e04271c98 https://www.encodeproject.org/files/ENCFF203OQV/@@download/ENCFF203OQV.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF530IHQ bam alignments ENCSR000ERV ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOK, ENCFF018NEO 515801628 ENCODE Processing Pipeline cbbe46b5624d785e233e85d14c0f8290 https://www.encodeproject.org/files/ENCFF530IHQ/@@download/ENCFF530IHQ.bam mm10 released low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF361BTU bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NZL, ENCFF018NEO 741984974 ENCODE Processing Pipeline a301f91dd208f3c7905a483578c19123 https://www.encodeproject.org/files/ENCFF361BTU/@@download/ENCFF361BTU.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF844BWV bam alignments ENCSR000ETL ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SMC3-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NZN, ENCFF018NEO 617496155 ENCODE Processing Pipeline 6807b721b98c9ed72d8c4779838bf40f https://www.encodeproject.org/files/ENCFF844BWV/@@download/ENCFF844BWV.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF846SWR bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NKV, ENCFF018NEO 732445194 ENCODE Processing Pipeline 020c7886ae80dedc0f14303ee1370e76 https://www.encodeproject.org/files/ENCFF846SWR/@@download/ENCFF846SWR.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF838XIQ bam alignments ENCSR000ERH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus POLR2AphosphoS2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NKM, ENCFF018NEO 655983259 ENCODE Processing Pipeline b97459f68295b10d756f29af779e841a https://www.encodeproject.org/files/ENCFF838XIQ/@@download/ENCFF838XIQ.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF975YHZ bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NSE, ENCFF018NEO 619217855 ENCODE Processing Pipeline e1f1748bdcbf62103b012a64c6acdc4d https://www.encodeproject.org/files/ENCFF975YHZ/@@download/ENCFF975YHZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF884OQV bam alignments ENCSR000ETA ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus dimethyl sulfoxide 2 percent 5 day GATA1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NSC, ENCFF018NEO 537380418 ENCODE Processing Pipeline 1eb1a3c6a90683e3ac2841bf113b73aa https://www.encodeproject.org/files/ENCFF884OQV/@@download/ENCFF884OQV.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF049EYU bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OAR, ENCFF018NEO 663897338 ENCODE Processing Pipeline a7f724793df140aadfeb3e8d98390f55 https://www.encodeproject.org/files/ENCFF049EYU/@@download/ENCFF049EYU.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF629AKI bam alignments ENCSR000ETF ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF2-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OAO, ENCFF018NEO 742191086 ENCODE Processing Pipeline 5e32c0fa016edf03b1c5279df8916aeb https://www.encodeproject.org/files/ENCFF629AKI/@@download/ENCFF629AKI.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF775BML bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 1 45 ENCFF002ADY, ENCFF018NEO 1389677911 ENCODE Processing Pipeline a88228ed0c69362cfab83b6eecf28629 https://www.encodeproject.org/files/ENCFF775BML/@@download/ENCFF775BML.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF536YVP bam alignments ENCSR779CZG ChIP-seq EFO:0007751 E14TG2a.4 stem cell Mus musculus NANOG-mouse DNA see document see document False 2014-03-14 ENCODE 2 45 ENCFF002AEA, ENCFF018NEO 1353141107 ENCODE Processing Pipeline 399fadeeaeff1b791db6ab1f20f8d39a https://www.encodeproject.org/files/ENCFF536YVP/@@download/ENCFF536YVP.bam mm10 released mixed read lengths, low read length, borderline replicate concordance experiment not submitted to GEO ENCFF442YKL bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NVQ, ENCFF018NEO 542742812 ENCODE Processing Pipeline 855c921b2393571e054273d6aeee6bbc https://www.encodeproject.org/files/ENCFF442YKL/@@download/ENCFF442YKL.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF106BFG bam alignments ENCSR000ETZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus JUND-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NVR, ENCFF018NEO 640421622 ENCODE Processing Pipeline 658267062caf03d056a39ca3cb671497 https://www.encodeproject.org/files/ENCFF106BFG/@@download/ENCFF106BFG.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF928UQF bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF996MWJ 394816691 ENCODE Processing Pipeline 29ec02c9c3704d56c043b35a490ba696 https://www.encodeproject.org/files/ENCFF928UQF/@@download/ENCFF928UQF.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF572FAR bam alignments ENCSR705HGT ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF550MZG 662970548 ENCODE Processing Pipeline 41118fc6c594c3cdfb4b1fc7805ae14f https://www.encodeproject.org/files/ENCFF572FAR/@@download/ENCFF572FAR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF114YOO bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LHI, ENCFF018NEO 613018324 ENCODE Processing Pipeline 3cb74e6a5af792806b9bbd11fd8828b5 https://www.encodeproject.org/files/ENCFF114YOO/@@download/ENCFF114YOO.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF257JDR bam alignments ENCSR000CFK ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus POLR2A-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LHL, ENCFF018NEO 1144350393 ENCODE Processing Pipeline 782de749288fac892aa26cd36ca5e195 https://www.encodeproject.org/files/ENCFF257JDR/@@download/ENCFF257JDR.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth ENCFF211JZH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF825QPA 539425575 ENCODE Processing Pipeline e7731ad8e4d741483cfd649c4fa3639b https://www.encodeproject.org/files/ENCFF211JZH/@@download/ENCFF211JZH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF123LVH bam alignments ENCSR293WTN ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF302OTZ 606561663 ENCODE Processing Pipeline b2cda9b4cd579c9f9ba06048d21af92d https://www.encodeproject.org/files/ENCFF123LVH/@@download/ENCFF123LVH.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF170BUL bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NTK, ENCFF018NEO 642545742 ENCODE Processing Pipeline 278cbc99e956a2505fa2efc2d4acfaf3 https://www.encodeproject.org/files/ENCFF170BUL/@@download/ENCFF170BUL.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF886LQZ bam alignments ENCSR000EUG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus GATA1-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NTN, ENCFF018NEO 652949954 ENCODE Processing Pipeline e29629fe5481fb35ab1b361902a23380 https://www.encodeproject.org/files/ENCFF886LQZ/@@download/ENCFF886LQZ.bam mm10 released low read length, inconsistent target of control experiment, low read depth biological replicates with identical biosample ENCFF351KUA bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NKS, ENCFF018NEO 927196561 ENCODE Processing Pipeline 86b03e93762d2afa6271865b28ebf94c https://www.encodeproject.org/files/ENCFF351KUA/@@download/ENCFF351KUA.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF848TVS bam alignments ENCSR000EQY ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NKQ, ENCFF018NEO 968236432 ENCODE Processing Pipeline 1c24d67a530793d47394bbc07a529b7f https://www.encodeproject.org/files/ENCFF848TVS/@@download/ENCFF848TVS.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment ENCFF484OES bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF125CLY 580227677 ENCODE Processing Pipeline 70e35cd4eaa9e8b1a2f424d2f9f7759e https://www.encodeproject.org/files/ENCFF484OES/@@download/ENCFF484OES.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF316WLC bam alignments ENCSR973SOG ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF654AKM 564131551 ENCODE Processing Pipeline 0d5d6c081424c2ee5be2cf41cb19ce5f https://www.encodeproject.org/files/ENCFF316WLC/@@download/ENCFF316WLC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF881FSZ bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF432YTR 661282685 ENCODE Processing Pipeline 1269770bf0dc7c37d89fdfc73e2b7116 https://www.encodeproject.org/files/ENCFF881FSZ/@@download/ENCFF881FSZ.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF352KWE bam alignments ENCSR349JDH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF880XUQ 496561585 ENCODE Processing Pipeline c759df7ff642b0907834e58a76474926 https://www.encodeproject.org/files/ENCFF352KWE/@@download/ENCFF352KWE.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF695ZHK bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF190NEX 699176703 ENCODE Processing Pipeline 42fea946b293c9f6bca976352a6e186e https://www.encodeproject.org/files/ENCFF695ZHK/@@download/ENCFF695ZHK.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF195QUA bam alignments ENCSR743ZJL ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus IRF4-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF929ZQW 701248210 ENCODE Processing Pipeline e061e491fdbd1b822db7816d0992a937 https://www.encodeproject.org/files/ENCFF195QUA/@@download/ENCFF195QUA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF532DSC bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MMD, ENCFF018NEO 1136376170 ENCODE Processing Pipeline d64fd74e5f02c0f445de727bc906e970 https://www.encodeproject.org/files/ENCFF532DSC/@@download/ENCFF532DSC.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF294OQM bam alignments ENCSR000DIH ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus PAX5-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MMH, ENCFF018NEO 1881495435 ENCODE Processing Pipeline 2fc388d04d25b482ad11a1b44eff8744 https://www.encodeproject.org/files/ENCFF294OQM/@@download/ENCFF294OQM.bam mm10 released low read length, inconsistent platforms, mixed read lengths ENCFF148NIG bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LHZ, ENCFF018NEO 239460877 ENCODE Processing Pipeline 390d9114197bd8c5a3d3cfc3a85791d3 https://www.encodeproject.org/files/ENCFF148NIG/@@download/ENCFF148NIG.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF341KOD bam alignments ENCSR000CBQ ChIP-seq UBERON:0002037 cerebellum tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIB, ENCFF018NEO 276369068 ENCODE Processing Pipeline cb9699668e7651c07f140f29eec0193c https://www.encodeproject.org/files/ENCFF341KOD/@@download/ENCFF341KOD.bam mm10 released low read length, control low read depth, borderline replicate concordance insufficient read depth ENCFF048SKE bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOC, ENCFF018NEO 207606107 ENCODE Processing Pipeline 6c0dd57badf4a2ccfef0bea377198d7d https://www.encodeproject.org/files/ENCFF048SKE/@@download/ENCFF048SKE.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF105EZY bam alignments ENCSR000CBT ChIP-seq UBERON:0002048 lung tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOH, ENCFF018NEO 499236178 ENCODE Processing Pipeline 7313694795f30b8a36bdb80501981090 https://www.encodeproject.org/files/ENCFF105EZY/@@download/ENCFF105EZY.bam mm10 released borderline replicate concordance, low read length, mild to moderate bottlenecking, control low read depth, low read depth extremely low read depth ENCFF315SAY bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NGT, ENCFF018NEO 747126420 ENCODE Processing Pipeline 57048197294ac52109e37a49524dd167 https://www.encodeproject.org/files/ENCFF315SAY/@@download/ENCFF315SAY.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF554HHU bam alignments ENCSR000ERA ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ETS1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NGR, ENCFF018NEO 547383652 ENCODE Processing Pipeline 12ee59cf0a635c06b1eb7b7f02b7a4aa https://www.encodeproject.org/files/ENCFF554HHU/@@download/ENCFF554HHU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity ENCFF641TEA bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF435VYL 384212350 ENCODE Processing Pipeline cc4c7fa4e0ab0ece9d833083d3835877 https://www.encodeproject.org/files/ENCFF641TEA/@@download/ENCFF641TEA.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF385EDC bam alignments ENCSR604XDL ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus MAFK-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF274DXL 588484753 ENCODE Processing Pipeline 389c52de4f3cdcb6b415c0cc22b6b528 https://www.encodeproject.org/files/ENCFF385EDC/@@download/ENCFF385EDC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth ENCFF317KQT bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LIW, ENCFF018NEO 436048000 ENCODE Processing Pipeline 5d8c665bb48f430e00ca7669f7d42269 https://www.encodeproject.org/files/ENCFF317KQT/@@download/ENCFF317KQT.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF623XLE bam alignments ENCSR000CBP ChIP-seq UBERON:0005343 cortical plate tissue Mus musculus POLR2A-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LIV, ENCFF018NEO 249245474 ENCODE Processing Pipeline 4bcefa9f7856352790db72d3df538d08 https://www.encodeproject.org/files/ENCFF623XLE/@@download/ENCFF623XLE.bam mm10 released low read length, mild to moderate bottlenecking, control low read depth insufficient read depth extremely low read depth ENCFF134EZT bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NWG, ENCFF018NEO 878161766 ENCODE Processing Pipeline 2d672c14214cb4609cee91f7eece0049 https://www.encodeproject.org/files/ENCFF134EZT/@@download/ENCFF134EZT.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF575MON bam alignments ENCSR000ETX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MAX-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NWK, ENCFF018NEO 1132869165 ENCODE Processing Pipeline 0f20756ccdc361f2476d5cee21be03f0 https://www.encodeproject.org/files/ENCFF575MON/@@download/ENCFF575MON.bam mm10 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF309VFP bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF986XRF 507930741 ENCODE Processing Pipeline 27492d8ee0420582f68d5cbe940908df https://www.encodeproject.org/files/ENCFF309VFP/@@download/ENCFF309VFP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF990KEU bam alignments ENCSR980YXJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF381HVY 420242107 ENCODE Processing Pipeline e4db407620e24fe385b8c3252a6a945a https://www.encodeproject.org/files/ENCFF990KEU/@@download/ENCFF990KEU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO ENCFF904LJW bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NNM, ENCFF018NEO 1139177408 ENCODE Processing Pipeline bb74e966b181203375ab8372e4cc6305 https://www.encodeproject.org/files/ENCFF904LJW/@@download/ENCFF904LJW.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF500FVS bam alignments ENCSR000ERJ ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus USF2-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NNF, ENCFF018NEO 834951614 ENCODE Processing Pipeline 3e7d0e4701dce1a1718d12421c288350 https://www.encodeproject.org/files/ENCFF500FVS/@@download/ENCFF500FVS.bam mm10 released low read length, inconsistent target of control experiment, low read depth ENCFF722FAV bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NSY, ENCFF018NEO 570868881 ENCODE Processing Pipeline a3ac9cedddc1e7126c088890f1303c84 https://www.encodeproject.org/files/ENCFF722FAV/@@download/ENCFF722FAV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF947LVT bam alignments ENCSR000ESG ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NTA, ENCFF018NEO 537885845 ENCODE Processing Pipeline 43e6c5d5e4eed3765cb73caa47e5d739 https://www.encodeproject.org/files/ENCFF947LVT/@@download/ENCFF947LVT.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF337AUO bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 1 36 ENCFF001LGV, ENCFF018NEO 608960718 ENCODE Processing Pipeline 572c3324b3d5a68fdd22a2ac432539a2 https://www.encodeproject.org/files/ENCFF337AUO/@@download/ENCFF337AUO.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF321PYA bam alignments ENCSR000CFJ ChIP-seq CL:0002476 bone marrow macrophage primary cell Mus musculus CTCF-mouse DNA see document see document False 2012-04-13 ENCODE 2 36 ENCFF001LGW, ENCFF018NEO 780037647 ENCODE Processing Pipeline b21167a2bd0b966d80efefefbdcc0435 https://www.encodeproject.org/files/ENCFF321PYA/@@download/ENCFF321PYA.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, low read depth ENCFF513TUI bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF433FQJ 125440369 ENCODE Processing Pipeline 570bcde637e1e9765a4b535fd7827647 https://www.encodeproject.org/files/ENCFF513TUI/@@download/ENCFF513TUI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF862RHC bam alignments ENCSR867SDZ ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF423RCQ 663501920 ENCODE Processing Pipeline 2ec3cc49f5fc40b3d5d464664fa17b2d https://www.encodeproject.org/files/ENCFF862RHC/@@download/ENCFF862RHC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO, biological replicates with identical biosample severe bottlenecking, poor library complexity, insufficient replicate concordance extremely low read depth ENCFF679SCA bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF845NFO 220445203 ENCODE Processing Pipeline 7f87615c9ed9f10d6d2fa538bc5cdd32 https://www.encodeproject.org/files/ENCFF679SCA/@@download/ENCFF679SCA.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF373DGP bam alignments ENCSR135SWH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus NRF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF205UPE 432421217 ENCODE Processing Pipeline cf10987ec35daca88fe620d4add0d42a https://www.encodeproject.org/files/ENCFF373DGP/@@download/ENCFF373DGP.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample insufficient read depth, severe bottlenecking, poor library complexity ENCFF583HQR bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF186NAS 418344237 ENCODE Processing Pipeline beba160cb06b5c5f6d0466fcdc468f0f https://www.encodeproject.org/files/ENCFF583HQR/@@download/ENCFF583HQR.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF624QGV bam alignments ENCSR033OWC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ELF1-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF592ERV 616161638 ENCODE Processing Pipeline b517bd64b4dff5ff23d0ffe40c31b852 https://www.encodeproject.org/files/ENCFF624QGV/@@download/ENCFF624QGV.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity experiment not submitted to GEO, biological replicates with identical biosample ENCFF754UEE bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NMP, ENCFF018NEO 682441286 ENCODE Processing Pipeline 4c45757dee1937c09541e5130579e17b https://www.encodeproject.org/files/ENCFF754UEE/@@download/ENCFF754UEE.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF815TDD bam alignments ENCSR000EQO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZNF384-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NMS, ENCFF018NEO 749079174 ENCODE Processing Pipeline c80bfb8a648b19ee92e630a9848305c5 https://www.encodeproject.org/files/ENCFF815TDD/@@download/ENCFF815TDD.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF801WZN bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001OBH, ENCFF018NEO 625981038 ENCODE Processing Pipeline 9e4b19c458c706a3a528945741164285 https://www.encodeproject.org/files/ENCFF801WZN/@@download/ENCFF801WZN.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF369IFU bam alignments ENCSR000ESX ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001OBF, ENCFF018NEO 576855560 ENCODE Processing Pipeline 0a9db6f02ac4fda55d07db688def80bf https://www.encodeproject.org/files/ENCFF369IFU/@@download/ENCFF369IFU.bam mm10 released mild to moderate bottlenecking, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment, moderate library complexity biological replicates with identical biosample ENCFF149RJR bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NHK, ENCFF018NEO 733180981 ENCODE Processing Pipeline c1c2bde27e1aabac1bf232c5368f927a https://www.encodeproject.org/files/ENCFF149RJR/@@download/ENCFF149RJR.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF770XWC bam alignments ENCSR000EQR ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus HCFC1-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NHI, ENCFF018NEO 725490839 ENCODE Processing Pipeline 17b6d1456ba76173f77936e8d66b8805 https://www.encodeproject.org/files/ENCFF770XWC/@@download/ENCFF770XWC.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF908WTX bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF453MVP 418935032 ENCODE Processing Pipeline ea78f282d8b778e49d9c799ec7e35b0c https://www.encodeproject.org/files/ENCFF908WTX/@@download/ENCFF908WTX.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF450DQZ bam alignments ENCSR906QEK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus TCF12-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF537ACV 670330387 ENCODE Processing Pipeline dd1964720745fe256d7c47c7d7bc5db9 https://www.encodeproject.org/files/ENCFF450DQZ/@@download/ENCFF450DQZ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment, low read depth experiment not submitted to GEO ENCFF541FCH bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NZF, ENCFF018NEO 925763687 ENCODE Processing Pipeline 76101cdd976df7bb157d79b5e682f31c https://www.encodeproject.org/files/ENCFF541FCH/@@download/ENCFF541FCH.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF379DPO bam alignments ENCSR000ETC ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus SIN3A-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NZD, ENCFF018NEO 885383515 ENCODE Processing Pipeline 54a24c03ea292907db72a3ef2643bb29 https://www.encodeproject.org/files/ENCFF379DPO/@@download/ENCFF379DPO.bam mm10 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF544KYC bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 1 36 ENCFF001NOS, ENCFF018NEO 570358979 ENCODE Processing Pipeline 3402504a9e11be493ad493dd309e93db https://www.encodeproject.org/files/ENCFF544KYC/@@download/ENCFF544KYC.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF318YRW bam alignments ENCSR000ESH ChIP-seq EFO:0003971 MEL cell line cell line Mus musculus BHLHE40-mouse DNA see document see document False 2012-08-16 ENCODE 2 36 ENCFF001NOU, ENCFF018NEO 818401125 ENCODE Processing Pipeline d658374ad999a7d07ca03dfb70bd3cf6 https://www.encodeproject.org/files/ENCFF318YRW/@@download/ENCFF318YRW.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF669MCR bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 2 36 ENCFF001NFQ, ENCFF018NEO 459532369 ENCODE Processing Pipeline 599cb1a665e5f29c75507040d8af913e https://www.encodeproject.org/files/ENCFF669MCR/@@download/ENCFF669MCR.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF518YCG bam alignments ENCSR000ERO ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus JUN-mouse DNA see document see document False 2011-09-19 ENCODE 1 36 ENCFF001NFT, ENCFF018NEO 554384203 ENCODE Processing Pipeline b525a40bd24734b54db816d35a0c4d6f https://www.encodeproject.org/files/ENCFF518YCG/@@download/ENCFF518YCG.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, inconsistent target of control experiment, low read depth insufficient read depth ENCFF941EUJ bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF529HKW 605535644 ENCODE Processing Pipeline 4e335fdcc8f6c040f798022553870625 https://www.encodeproject.org/files/ENCFF941EUJ/@@download/ENCFF941EUJ.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF044NRI bam alignments ENCSR531HWD ChIP-seq EFO:0007075 ES-E14 stem cell Mus musculus CHD2-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF254ZVV 854358725 ENCODE Processing Pipeline e488a44bc42fcbecb8189751f7561a17 https://www.encodeproject.org/files/ENCFF044NRI/@@download/ENCFF044NRI.bam mm10 released low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth experiment not submitted to GEO, biological replicates with identical biosample ENCFF025IEG bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 2 36 ENCFF018NEO, ENCFF319ABF 677545648 ENCODE Processing Pipeline 9a1d57802907fc3db32fa8ee1ad4e863 https://www.encodeproject.org/files/ENCFF025IEG/@@download/ENCFF025IEG.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF678DXL bam alignments ENCSR806JZK ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus MEF2A-mouse DNA False 2014-12-08 ENCODE 1 36 ENCFF018NEO, ENCFF443PSH 570828135 ENCODE Processing Pipeline b641bb9c6956e42b8e16e550b1dd1935 https://www.encodeproject.org/files/ENCFF678DXL/@@download/ENCFF678DXL.bam mm10 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, low read length, inconsistent target of control experiment experiment not submitted to GEO ENCFF564ZUE bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 2 36 ENCFF001LOI, ENCFF018NEO 250447605 ENCODE Processing Pipeline d36a0e2f8a43c21b3fd3ff706d871243 https://www.encodeproject.org/files/ENCFF564ZUE/@@download/ENCFF564ZUE.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF464NFI bam alignments ENCSR000CBW ChIP-seq CL:2000042 embryonic fibroblast primary cell Mus musculus CTCF-mouse DNA see document see document False 2011-07-22 ENCODE 1 36 ENCFF001LOK, ENCFF018NEO 267730430 ENCODE Processing Pipeline c0854275972f38d9223651eb1abe5fa7 https://www.encodeproject.org/files/ENCFF464NFI/@@download/ENCFF464NFI.bam mm10 released low read length, moderate library complexity, mild to moderate bottlenecking, control low read depth, borderline replicate concordance insufficient read depth ENCFF482OKL bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 2 36 ENCFF001NMJ, ENCFF018NEO 626157010 ENCODE Processing Pipeline 368823dda68040e51560f087cb0bd8aa https://www.encodeproject.org/files/ENCFF482OKL/@@download/ENCFF482OKL.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF700OOX bam alignments ENCSR000EQW ChIP-seq EFO:0005233 CH12.LX cell line Mus musculus ZKSCAN1-mouse DNA see document see document False 2012-06-15 ENCODE 1 36 ENCFF001NMH, ENCFF018NEO 693314323 ENCODE Processing Pipeline da950b7a3e3aaff8a0d2aba01c5b1356 https://www.encodeproject.org/files/ENCFF700OOX/@@download/ENCFF700OOX.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, inconsistent target of control experiment, low read depth ENCFF700PLH bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 2 36 ENCFF001MOP, ENCFF018NEO 494259929 ENCODE Processing Pipeline c902a77cf7f8a330e8e0b4a6ef93b795 https://www.encodeproject.org/files/ENCFF700PLH/@@download/ENCFF700PLH.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF825JNS bam alignments ENCSR000DIE ChIP-seq EFO:0002034 G1E stem cell Mus musculus GATA2-mouse DNA see document see document False 2012-02-13 ENCODE 1 36 ENCFF001MOI, ENCFF018NEO 588169998 ENCODE Processing Pipeline 0bae69cb610c88d8a8da065ef0d926a6 https://www.encodeproject.org/files/ENCFF825JNS/@@download/ENCFF825JNS.bam mm10 released borderline replicate concordance, low read length, inconsistent platforms, low read depth biological replicates with identical biosample