ENCFF281SDB bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF539TVP, ENCFF807MUK 700726692 ENCODE Processing Pipeline cebf5813192f489e6f1685848670f484 https://www.encodeproject.org/files/ENCFF281SDB/@@download/ENCFF281SDB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF667KBF bam alignments ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF925UZZ 875727844 ENCODE Processing Pipeline df12c540236f6131ce71b5a7418f66f8 https://www.encodeproject.org/files/ENCFF667KBF/@@download/ENCFF667KBF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF724MBT bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPD, ENCFF002EGB, ENCFF807MUK 5029153075 ENCODE Processing Pipeline 0244313f5904123cbd50caae31b05d45 https://www.encodeproject.org/files/ENCFF724MBT/@@download/ENCFF724MBT.bam hg19 released mild to moderate bottlenecking ENCFF882JOI bam alignments ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPB, ENCFF002DUE, ENCFF807MUK 3976683577 ENCODE Processing Pipeline 34813cfb66968d9a8c9f792dd834f542 https://www.encodeproject.org/files/ENCFF882JOI/@@download/ENCFF882JOI.bam hg19 released mild to moderate bottlenecking ENCFF417XBC bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF695OMH, ENCFF807MUK 1121702001 ENCODE Processing Pipeline afde1dd84bdf224df11c6c3ffee34005 https://www.encodeproject.org/files/ENCFF417XBC/@@download/ENCFF417XBC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970GQA bam alignments ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF679POI, ENCFF807MUK 1681515612 ENCODE Processing Pipeline 4a6930001b3514c4f63e1d617cde69ca https://www.encodeproject.org/files/ENCFF970GQA/@@download/ENCFF970GQA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF749SPN bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF856FXU, ENCFF947GWY 804252816 ENCODE Processing Pipeline 41c70bda1536739111f62225c9900724 https://www.encodeproject.org/files/ENCFF749SPN/@@download/ENCFF749SPN.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF151KAU bam alignments ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 50 ENCFF159GUZ, ENCFF771AEO, ENCFF807MUK 791866884 ENCODE Processing Pipeline d22030050e9c50091d2002e0ca1018a0 https://www.encodeproject.org/files/ENCFF151KAU/@@download/ENCFF151KAU.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF564MED bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF663NBI, ENCFF667DGY, ENCFF807MUK 4004727318 ENCODE Processing Pipeline fb1e494f5b94f6d8eb6e0cd6200e9943 https://www.encodeproject.org/files/ENCFF564MED/@@download/ENCFF564MED.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF079ISN bam alignments ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF165NMW, ENCFF411TJB, ENCFF807MUK 3454448161 ENCODE Processing Pipeline 5a22116e6b9fdd774bd37460381a9d29 https://www.encodeproject.org/files/ENCFF079ISN/@@download/ENCFF079ISN.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF310MZC bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF823JNT 1204387995 ENCODE Processing Pipeline f6007eef6258e1cfba741299a9ba1655 https://www.encodeproject.org/files/ENCFF310MZC/@@download/ENCFF310MZC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF597IWX bam alignments ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF352WCY, ENCFF807MUK 1169143059 ENCODE Processing Pipeline 1a88a1d1778d063b94479897f5c3c358 https://www.encodeproject.org/files/ENCFF597IWX/@@download/ENCFF597IWX.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF127YRH bam alignments ENCSR515LRI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF028GGC, ENCFF235XFK, ENCFF549IAN, ENCFF807MUK, ENCFF873YZS 4936443720 ENCODE Processing Pipeline cf1ee8b055cdc6fc6d6b54954fc8a743 https://www.encodeproject.org/files/ENCFF127YRH/@@download/ENCFF127YRH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF061KWB bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EGV, ENCFF002EHC, ENCFF807MUK 5828328579 ENCODE Processing Pipeline 99ec458e7f53cd2d19489f6adeb6ccd3 https://www.encodeproject.org/files/ENCFF061KWB/@@download/ENCFF061KWB.bam hg19 released antibody characterized with exemption ENCFF511YMN bam alignments ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTQ, ENCFF002EGZ, ENCFF807MUK 5534624968 ENCODE Processing Pipeline 9f8157b7e6cb29f3b5c5ea0c9fc51bfa https://www.encodeproject.org/files/ENCFF511YMN/@@download/ENCFF511YMN.bam hg19 released antibody characterized with exemption ENCFF936JKF bam alignments ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF047AKE, ENCFF275CUA, ENCFF585OIE, ENCFF632BHK, ENCFF807MUK 7831349759 ENCODE Processing Pipeline 08657b7848f39a73951c836b9906bca3 https://www.encodeproject.org/files/ENCFF936JKF/@@download/ENCFF936JKF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF143UTJ bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 100 ENCFF398EAS, ENCFF493SOQ, ENCFF807MUK 3697644036 ENCODE Processing Pipeline 6dfc728a5983c5d7b273be0ae109388a https://www.encodeproject.org/files/ENCFF143UTJ/@@download/ENCFF143UTJ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF811OUA bam alignments ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 100 ENCFF014DOG, ENCFF284BOO, ENCFF807MUK 6770053501 ENCODE Processing Pipeline b626d7a211acd5969cc2dfecb44c0e99 https://www.encodeproject.org/files/ENCFF811OUA/@@download/ENCFF811OUA.bam hg19 released control low read depth, missing genetic modification characterization ENCFF408OZV bam alignments ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF203YAZ, ENCFF682QTO, ENCFF807MUK 4526180642 ENCODE Processing Pipeline 79a3757a976b0e1991c07671d30ddf94 https://www.encodeproject.org/files/ENCFF408OZV/@@download/ENCFF408OZV.bam hg19 released antibody characterized with exemption missing control alignments ENCFF578CTB bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 100 ENCFF442MPQ, ENCFF677HXI, ENCFF807MUK 4271614014 ENCODE Processing Pipeline 4e8dbc5dc7ae4247a9e1f46da7d3405d https://www.encodeproject.org/files/ENCFF578CTB/@@download/ENCFF578CTB.bam hg19 released control low read depth, missing genetic modification characterization ENCFF197TMV bam alignments ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 100 ENCFF335SYB, ENCFF734FMS, ENCFF807MUK 4043923261 ENCODE Processing Pipeline 7fa1c385b5b9fc312a619e0273c61892 https://www.encodeproject.org/files/ENCFF197TMV/@@download/ENCFF197TMV.bam hg19 released control low read depth, missing genetic modification characterization ENCFF207ILO bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 100 ENCFF194JCS, ENCFF807MUK, ENCFF831HED 3992877850 ENCODE Processing Pipeline 8d471aceeae5c01ab556eabb8bce62f4 https://www.encodeproject.org/files/ENCFF207ILO/@@download/ENCFF207ILO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF981ZOJ bam alignments ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 100 ENCFF105BAY, ENCFF434ISC, ENCFF807MUK 8290086838 ENCODE Processing Pipeline 9625cc42ba8c1be17db40749b9cddfaa https://www.encodeproject.org/files/ENCFF981ZOJ/@@download/ENCFF981ZOJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF014UOC bam alignments ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF269TVU, ENCFF687SPD, ENCFF807MUK 2990707165 ENCODE Processing Pipeline decf2ae65ab6a3d1a36301128d52dd84 https://www.encodeproject.org/files/ENCFF014UOC/@@download/ENCFF014UOC.bam hg19 released antibody characterized with exemption ENCFF807NZJ bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 100 ENCFF157JAL, ENCFF807MUK, ENCFF977AJQ 3535194946 ENCODE Processing Pipeline 63c19dfad9fabfb625c53ea0c780e26a https://www.encodeproject.org/files/ENCFF807NZJ/@@download/ENCFF807NZJ.bam hg19 released low read depth, missing genetic modification characterization ENCFF767NHP bam alignments ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 100 ENCFF615CRG, ENCFF718HUU, ENCFF807MUK 3200739042 ENCODE Processing Pipeline 7eb61a8981023c5a4e6d871e4bac8964 https://www.encodeproject.org/files/ENCFF767NHP/@@download/ENCFF767NHP.bam hg19 released low read depth, missing genetic modification characterization ENCFF795XNL bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 100 ENCFF017IMJ, ENCFF349MIY, ENCFF807MUK 3709819467 ENCODE Processing Pipeline 47652183cd8e93c130a4cf04cbc6493a https://www.encodeproject.org/files/ENCFF795XNL/@@download/ENCFF795XNL.bam hg19 released antibody characterized with exemption ENCFF316QXZ bam alignments ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 100 ENCFF171QIU, ENCFF807MUK, ENCFF920GYM 4708379292 ENCODE Processing Pipeline a587da96025d9d8ce74fe0a41bd5e34b https://www.encodeproject.org/files/ENCFF316QXZ/@@download/ENCFF316QXZ.bam hg19 released antibody characterized with exemption ENCFF632PPF bam alignments ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258EWB, ENCFF807MUK, ENCFF837BAY 2943973236 ENCODE Processing Pipeline 759a66ca109f7cbc572b07abd545c3d6 https://www.encodeproject.org/files/ENCFF632PPF/@@download/ENCFF632PPF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF374DQB bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF853ECX 950555468 ENCODE Processing Pipeline 26437acedcdd92077acadbd3c3b9f478 https://www.encodeproject.org/files/ENCFF374DQB/@@download/ENCFF374DQB.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF296PIX bam alignments ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF038RNL, ENCFF807MUK 1222924444 ENCODE Processing Pipeline c7747323d99f341f65dc5f4b49a57426 https://www.encodeproject.org/files/ENCFF296PIX/@@download/ENCFF296PIX.bam hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF904PIO bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 100 ENCFF074UIO, ENCFF186DEJ, ENCFF807MUK 3945232879 ENCODE Processing Pipeline 90c9cae76e95e7f174199a52c762190e https://www.encodeproject.org/files/ENCFF904PIO/@@download/ENCFF904PIO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF070QUN bam alignments ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 100 ENCFF148FMX, ENCFF528GYT, ENCFF807MUK 5067773423 ENCODE Processing Pipeline 7990830fdaf2860c49dbc0b8c2c30174 https://www.encodeproject.org/files/ENCFF070QUN/@@download/ENCFF070QUN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF051OAV bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF822AJG 857239659 ENCODE Processing Pipeline 331ec482b6a825598d1982a0834c214c https://www.encodeproject.org/files/ENCFF051OAV/@@download/ENCFF051OAV.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF528KWW bam alignments ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF801MAM, ENCFF807MUK 725800333 ENCODE Processing Pipeline a5eb43feed3a804da1ffa442f2913dfe https://www.encodeproject.org/files/ENCFF528KWW/@@download/ENCFF528KWW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF929AIJ bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF807MUK, ENCFF807OLO, ENCFF942FDD 5159466376 ENCODE Processing Pipeline 95cb0d0b0cfbb64b261ae470f577d976 https://www.encodeproject.org/files/ENCFF929AIJ/@@download/ENCFF929AIJ.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF630NYB bam alignments ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF438UFH, ENCFF807MUK, ENCFF994DFN 5304234218 ENCODE Processing Pipeline 1da982435a8bc49e319b1f5696d5eb85 https://www.encodeproject.org/files/ENCFF630NYB/@@download/ENCFF630NYB.bam hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF986MVN bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF428KVQ, ENCFF807MUK, ENCFF845NIC 5283453352 ENCODE Processing Pipeline 954eede4f0093e7192ea07c119f8648b https://www.encodeproject.org/files/ENCFF986MVN/@@download/ENCFF986MVN.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF081SMO bam alignments ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF637DCS, ENCFF807MUK, ENCFF813FAX 4671984014 ENCODE Processing Pipeline 850de43f2c033de40dd44d5f0d1e7cd7 https://www.encodeproject.org/files/ENCFF081SMO/@@download/ENCFF081SMO.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF943WPZ bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 100 ENCFF340VHI, ENCFF710XSY, ENCFF807MUK 2327103816 ENCODE Processing Pipeline 987702e26b88ff990d70f259f2ffcd23 https://www.encodeproject.org/files/ENCFF943WPZ/@@download/ENCFF943WPZ.bam hg19 released low read depth ENCFF239DXH bam alignments ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 100 ENCFF139VNK, ENCFF705WPL, ENCFF807MUK 2737771975 ENCODE Processing Pipeline 7e9b3237d0d92cb271978403b753a0ca https://www.encodeproject.org/files/ENCFF239DXH/@@download/ENCFF239DXH.bam hg19 released low read depth ENCFF621AIX bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOQ, ENCFF002EHP, ENCFF807MUK 6457320830 ENCODE Processing Pipeline eaf974bbfe570893c9c49213fde0e7b8 https://www.encodeproject.org/files/ENCFF621AIX/@@download/ENCFF621AIX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF571DSD bam alignments ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOM, ENCFF002EHO, ENCFF807MUK 6575817140 ENCODE Processing Pipeline f42789153bc585b8f23b56b92d97a776 https://www.encodeproject.org/files/ENCFF571DSD/@@download/ENCFF571DSD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF839GLQ bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF698ICA, ENCFF807MUK, ENCFF839LPL 4288292713 ENCODE Processing Pipeline 4ce0e20104fbb50578aef291abcc147d https://www.encodeproject.org/files/ENCFF839GLQ/@@download/ENCFF839GLQ.bam hg19 released low read depth ENCFF138LNW bam alignments ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF400NVU, ENCFF807MUK, ENCFF920SBM 3492763395 ENCODE Processing Pipeline 6c3630e808f2c33d70183d85203e41d3 https://www.encodeproject.org/files/ENCFF138LNW/@@download/ENCFF138LNW.bam hg19 released low read depth ENCFF841KTI bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF803CCE, ENCFF807MUK, ENCFF917BAA 1788975295 ENCODE Processing Pipeline eb1761e761ed6026c547cfbd953a27da https://www.encodeproject.org/files/ENCFF841KTI/@@download/ENCFF841KTI.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF911AAQ bam alignments ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF108ESB, ENCFF807MUK, ENCFF895VJN 2169983205 ENCODE Processing Pipeline 15b6f8b327b0fbf49a8231de09d6bcc2 https://www.encodeproject.org/files/ENCFF911AAQ/@@download/ENCFF911AAQ.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF590YRR bam alignments ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF100YUK, ENCFF800GHL, ENCFF807MUK 7701434066 ENCODE Processing Pipeline 3d220a41c3ff3b9ff4a32e64f18445d0 https://www.encodeproject.org/files/ENCFF590YRR/@@download/ENCFF590YRR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF632XPI bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 100 ENCFF230HNM, ENCFF621NBR, ENCFF807MUK 2601606091 ENCODE Processing Pipeline 96094db01007e34a1b1b62488159aa32 https://www.encodeproject.org/files/ENCFF632XPI/@@download/ENCFF632XPI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF748QNI bam alignments ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 100 ENCFF096VXL, ENCFF807MUK, ENCFF960ZID 3498764104 ENCODE Processing Pipeline e53309e28f49e5deb527411901d72907 https://www.encodeproject.org/files/ENCFF748QNI/@@download/ENCFF748QNI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF129PLZ bam alignments ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF252EVO, ENCFF807MUK, ENCFF945PBZ 2310900837 ENCODE Processing Pipeline f97efeff2508978305942203ab2c0eb1 https://www.encodeproject.org/files/ENCFF129PLZ/@@download/ENCFF129PLZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF194CKI bam alignments ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF074WTD, ENCFF784DME, ENCFF807MUK 1912047520 ENCODE Processing Pipeline 04578109bbe2608a906f33dc24cf574c https://www.encodeproject.org/files/ENCFF194CKI/@@download/ENCFF194CKI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF021JJL bam alignments ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF324OEI, ENCFF643ITK, ENCFF807MUK 3352870542 ENCODE Processing Pipeline c1f0f9b862d210c2d65f613542450a7d https://www.encodeproject.org/files/ENCFF021JJL/@@download/ENCFF021JJL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF127OLY bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 3 100 ENCFF807MUK, ENCFF908SKY, ENCFF942ZRE 4135383689 ENCODE Processing Pipeline 620850699dec1a60cea6040ddb7ae763 https://www.encodeproject.org/files/ENCFF127OLY/@@download/ENCFF127OLY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF345VAR bam alignments ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human DNA False 2018-01-26 ENCODE 4 100 ENCFF369MSV, ENCFF770NDG, ENCFF807MUK 5602611724 ENCODE Processing Pipeline 77a3e686caf30b5c1e0fa2706c1807bf https://www.encodeproject.org/files/ENCFF345VAR/@@download/ENCFF345VAR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF263IJB bam alignments ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF342VAQ, ENCFF422OJZ, ENCFF807MUK 2276793050 ENCODE Processing Pipeline ad0c94612cc80c85bd4faf9f2928889e https://www.encodeproject.org/files/ENCFF263IJB/@@download/ENCFF263IJB.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF726KOK bam alignments ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF133IBS, ENCFF807MUK, ENCFF846BTF 2446585181 ENCODE Processing Pipeline b9efae8e1e18f10f12b971992b651436 https://www.encodeproject.org/files/ENCFF726KOK/@@download/ENCFF726KOK.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF821TOA bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF299YIC, ENCFF807MUK, ENCFF826AKY 4668356811 ENCODE Processing Pipeline af336ce98d50e63c2e4553c66dd67dbb https://www.encodeproject.org/files/ENCFF821TOA/@@download/ENCFF821TOA.bam hg19 released ENCFF471WLV bam alignments ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF050YVZ, ENCFF745PCH, ENCFF807MUK 4425767161 ENCODE Processing Pipeline 993c784837eb80a417ff745f52273365 https://www.encodeproject.org/files/ENCFF471WLV/@@download/ENCFF471WLV.bam hg19 released ENCFF972JKW bam alignments ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF028SIJ, ENCFF659QDJ, ENCFF807MUK 2415656823 ENCODE Processing Pipeline 40ae85eae07aefc62978f8bdb7164e2c https://www.encodeproject.org/files/ENCFF972JKW/@@download/ENCFF972JKW.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF965QNY bam alignments ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF466DDM, ENCFF768VKW, ENCFF807MUK 2864108229 ENCODE Processing Pipeline 2d1f65bfd937411cde4fa4bd03052727 https://www.encodeproject.org/files/ENCFF965QNY/@@download/ENCFF965QNY.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF330WGJ bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432KKI, ENCFF807MUK, ENCFF971GFY 4145841335 ENCODE Processing Pipeline 3134b244641c33f294dc31f7bab1bf3f https://www.encodeproject.org/files/ENCFF330WGJ/@@download/ENCFF330WGJ.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF634JQQ bam alignments ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 100 ENCFF126NLO, ENCFF358CMD, ENCFF807MUK 3486116166 ENCODE Processing Pipeline a8f8c05808c51e772e25453e99bf3e88 https://www.encodeproject.org/files/ENCFF634JQQ/@@download/ENCFF634JQQ.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF622CTL bam alignments ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF150ATP, ENCFF807MUK, ENCFF814ZXA 3315231561 ENCODE Processing Pipeline 395850f0fcc656a66d3e4e7a4aa09f27 https://www.encodeproject.org/files/ENCFF622CTL/@@download/ENCFF622CTL.bam hg19 released antibody characterized with exemption ENCFF942LEC bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 76 ENCFF403YQE, ENCFF807MUK 991571982 ENCODE Processing Pipeline 05084dd416746d6bb988786ea208dd01 https://www.encodeproject.org/files/ENCFF942LEC/@@download/ENCFF942LEC.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF031TWZ bam alignments ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 76 ENCFF064SPT, ENCFF807MUK 1289660702 ENCODE Processing Pipeline 335adc6f486cb7ff8d89b38d2a08ff84 https://www.encodeproject.org/files/ENCFF031TWZ/@@download/ENCFF031TWZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF603NZR bam alignments ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF415LTO, ENCFF807MUK, ENCFF963NAF 3983388986 ENCODE Processing Pipeline f8db66bdf8c58e36d99b043c27073c40 https://www.encodeproject.org/files/ENCFF603NZR/@@download/ENCFF603NZR.bam hg19 released antibody characterized with exemption ENCFF400NRC bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 100 ENCFF239SIO, ENCFF807MUK, ENCFF871KIO 3555424313 ENCODE Processing Pipeline 3fd86912d0f7a8bc7eb851bf8f087769 https://www.encodeproject.org/files/ENCFF400NRC/@@download/ENCFF400NRC.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF413UKW bam alignments ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 100 ENCFF545WZD, ENCFF807MUK, ENCFF928EJZ 4357537660 ENCODE Processing Pipeline 2b55d9acd46e48bb635f09fba38e0732 https://www.encodeproject.org/files/ENCFF413UKW/@@download/ENCFF413UKW.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF667QTL bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 100 ENCFF140CYN, ENCFF309FAZ, ENCFF807MUK 4556375994 ENCODE Processing Pipeline be49f504420ceee945a417d93fd1d5cb https://www.encodeproject.org/files/ENCFF667QTL/@@download/ENCFF667QTL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF118FTD bam alignments ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 100 ENCFF380LXZ, ENCFF480JJF, ENCFF807MUK 5249087440 ENCODE Processing Pipeline 06448ffecbeb9b20bac34e4c43904b8a https://www.encodeproject.org/files/ENCFF118FTD/@@download/ENCFF118FTD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF630UCU bam alignments ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF025XGP, ENCFF319EYM, ENCFF807MUK 2771437023 ENCODE Processing Pipeline 5025a0c26e1b2eda241c3e53a8813cba https://www.encodeproject.org/files/ENCFF630UCU/@@download/ENCFF630UCU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF532ZHO bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF811ZQF 1115728667 ENCODE Processing Pipeline dcebf1ac15da8b771ffe26d199938582 https://www.encodeproject.org/files/ENCFF532ZHO/@@download/ENCFF532ZHO.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF806KRN bam alignments ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 76 ENCFF266MCK, ENCFF807MUK 1044890524 ENCODE Processing Pipeline d839257ba9ccccdc4c58dd13e745daad https://www.encodeproject.org/files/ENCFF806KRN/@@download/ENCFF806KRN.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463KKL bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF755BUR, ENCFF807MUK, ENCFF994RSC 4179492222 ENCODE Processing Pipeline a284c16e0a5dbfbabffcb3fd98d1faae https://www.encodeproject.org/files/ENCFF463KKL/@@download/ENCFF463KKL.bam hg19 released ENCFF069MNA bam alignments ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF135KOW, ENCFF789UDV, ENCFF807MUK 5836136796 ENCODE Processing Pipeline a237c13c073e0a8b797b7bb3e230f558 https://www.encodeproject.org/files/ENCFF069MNA/@@download/ENCFF069MNA.bam hg19 released ENCFF322PIR bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF425ZYO, ENCFF807MUK 1690147510 ENCODE Processing Pipeline c19842c9124092d78e2669d8de2fbdc1 https://www.encodeproject.org/files/ENCFF322PIR/@@download/ENCFF322PIR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF155WNX bam alignments ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF937ICR 1745311423 ENCODE Processing Pipeline be861267a253dea4b2e3fe8f43451e5e https://www.encodeproject.org/files/ENCFF155WNX/@@download/ENCFF155WNX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF447GXR bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF951QJT 1124379905 ENCODE Processing Pipeline 4ce16986c12b9e820480a6482cee6b5c https://www.encodeproject.org/files/ENCFF447GXR/@@download/ENCFF447GXR.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF453OTB bam alignments ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF517FOY, ENCFF807MUK 1382675458 ENCODE Processing Pipeline ef55c47fd0f5b9a31eafc5275ecdf585 https://www.encodeproject.org/files/ENCFF453OTB/@@download/ENCFF453OTB.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF419SAO bam alignments ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF807MUK, ENCFF831BTD, ENCFF975DXM 2843172744 ENCODE Processing Pipeline 8a809219f08d75386664178917a09439 https://www.encodeproject.org/files/ENCFF419SAO/@@download/ENCFF419SAO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF574DCD bam alignments ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 100 ENCFF516YRH, ENCFF807MUK, ENCFF883DYX 3547473121 ENCODE Processing Pipeline c5636b8d56abb45b87bbcb872e1597a8 https://www.encodeproject.org/files/ENCFF574DCD/@@download/ENCFF574DCD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF568FRV bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF697STR, ENCFF766QOB, ENCFF807MUK 2905773575 ENCODE Processing Pipeline 297f4dae172fc5a619d35fa713777ce2 https://www.encodeproject.org/files/ENCFF568FRV/@@download/ENCFF568FRV.bam hg19 released low read depth ENCFF333NCC bam alignments ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF374EZV, ENCFF807MUK, ENCFF887TWQ 2802016440 ENCODE Processing Pipeline 7c447ea4db24663dfc7cf2fb5d48107c https://www.encodeproject.org/files/ENCFF333NCC/@@download/ENCFF333NCC.bam hg19 released low read depth ENCFF051HDO bam alignments ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF422HJD, ENCFF807MUK, ENCFF844CHO 3907081921 ENCODE Processing Pipeline 9a9de95d5435234c2d815ac3f4f83326 https://www.encodeproject.org/files/ENCFF051HDO/@@download/ENCFF051HDO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF621JTB bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 100 ENCFF501RUA, ENCFF721WRK, ENCFF807MUK 6514679259 ENCODE Processing Pipeline bb47ad417d035d554b9ba1c5e7fb003d https://www.encodeproject.org/files/ENCFF621JTB/@@download/ENCFF621JTB.bam hg19 released ENCFF508SEX bam alignments ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 100 ENCFF567PIT, ENCFF568RGZ, ENCFF807MUK 5634227522 ENCODE Processing Pipeline 3ac416fe01d0765726196b55a99a457c https://www.encodeproject.org/files/ENCFF508SEX/@@download/ENCFF508SEX.bam hg19 released ENCFF397XVJ bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 3 100 ENCFF189UUN, ENCFF332XKO, ENCFF807MUK 3741355948 ENCODE Processing Pipeline dbc3dfb7c06fbadc3cd193ca4dde3cf8 https://www.encodeproject.org/files/ENCFF397XVJ/@@download/ENCFF397XVJ.bam hg19 released low read depth ENCFF675GYP bam alignments ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human DNA False 2016-06-23 ENCODE 4 100 ENCFF094FKH, ENCFF807MUK, ENCFF968SHS 3096534358 ENCODE Processing Pipeline dc8cc650e3fb1c9e853c2d8dad3cb2ed https://www.encodeproject.org/files/ENCFF675GYP/@@download/ENCFF675GYP.bam hg19 released low read depth ENCFF512OEJ bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 100 ENCFF169CRK, ENCFF367HUF, ENCFF807MUK 4035172019 ENCODE Processing Pipeline 987d6216bf3c30b78f77f638e7184106 https://www.encodeproject.org/files/ENCFF512OEJ/@@download/ENCFF512OEJ.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF478OFO bam alignments ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 100 ENCFF126JWD, ENCFF457RYN, ENCFF807MUK 4120415067 ENCODE Processing Pipeline 5544eda7d5dee708a8f2a991e22da0a9 https://www.encodeproject.org/files/ENCFF478OFO/@@download/ENCFF478OFO.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF971DOF bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 76 ENCFF666SRS, ENCFF807MUK 1112491964 ENCODE Processing Pipeline c09e15ff1e316d7678ecd709a805f9ee https://www.encodeproject.org/files/ENCFF971DOF/@@download/ENCFF971DOF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF700RMC bam alignments ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF816KGP 2010739545 ENCODE Processing Pipeline f375de62c4f6235a470181b0b20ad3c0 https://www.encodeproject.org/files/ENCFF700RMC/@@download/ENCFF700RMC.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF946BKE bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 50 ENCFF807MUK, ENCFF959QTN 1069901936 ENCODE Processing Pipeline b9efb0051d67fbf9492c1fe10f09a005 https://www.encodeproject.org/files/ENCFF946BKE/@@download/ENCFF946BKE.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF862PIC bam alignments ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 50 ENCFF204JMO, ENCFF807MUK 1624723653 ENCODE Processing Pipeline 2738b8297ac2a9fc8786e17bc7844de8 https://www.encodeproject.org/files/ENCFF862PIC/@@download/ENCFF862PIC.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF657MSB bam alignments ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 50 ENCFF191GQU, ENCFF807MUK 1112004726 ENCODE Processing Pipeline 3d5955d75f5ff13ef5733c37a71742a2 https://www.encodeproject.org/files/ENCFF657MSB/@@download/ENCFF657MSB.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF571KDO bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF483DQG, ENCFF622IRP, ENCFF807MUK 5494356551 ENCODE Processing Pipeline 3e8172cd0e828efa9ebf4966588a2838 https://www.encodeproject.org/files/ENCFF571KDO/@@download/ENCFF571KDO.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF658KLO bam alignments ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF699WWO, ENCFF807MUK, ENCFF864GEB 5739974618 ENCODE Processing Pipeline 8d756f3683bd89a787eeeba4a1bd0c1a https://www.encodeproject.org/files/ENCFF658KLO/@@download/ENCFF658KLO.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF373VCV bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 100 ENCFF099UOS, ENCFF790ADI, ENCFF807MUK 3999945910 ENCODE Processing Pipeline f921d90eb2543d86d731dc2d8b238e07 https://www.encodeproject.org/files/ENCFF373VCV/@@download/ENCFF373VCV.bam hg19 released missing genetic modification characterization ENCFF124VCI bam alignments ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 100 ENCFF098GTH, ENCFF807MUK, ENCFF926UQW 4581542885 ENCODE Processing Pipeline 747f107adcd5c4b4b76c1e3d32477e0e https://www.encodeproject.org/files/ENCFF124VCI/@@download/ENCFF124VCI.bam hg19 released missing genetic modification characterization ENCFF232RDZ bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF526NYU, ENCFF807MUK 708606305 ENCODE Processing Pipeline a8801a4f86ee0491ca7f22c5ff3d827a https://www.encodeproject.org/files/ENCFF232RDZ/@@download/ENCFF232RDZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF907MUS bam alignments ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF253ROA, ENCFF807MUK 1153891348 ENCODE Processing Pipeline ab542e8c689b5b7df112acd2c3603594 https://www.encodeproject.org/files/ENCFF907MUS/@@download/ENCFF907MUS.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF282SQP bam alignments ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF448IBU, ENCFF807MUK, ENCFF981LZA 4264437418 ENCODE Processing Pipeline 163470679e47eb6803dde3f75e979917 https://www.encodeproject.org/files/ENCFF282SQP/@@download/ENCFF282SQP.bam hg19 released antibody characterized with exemption ENCFF170QWA bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 100 ENCFF574HXK, ENCFF807MUK, ENCFF997CNG 4616663173 ENCODE Processing Pipeline 236dfb01a7419459a8377ccb76194abd https://www.encodeproject.org/files/ENCFF170QWA/@@download/ENCFF170QWA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF201IJO bam alignments ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 100 ENCFF364TAC, ENCFF393WEP, ENCFF807MUK 10117411036 ENCODE Processing Pipeline 05aa35d552cdf7d91ef33ddcfa810892 https://www.encodeproject.org/files/ENCFF201IJO/@@download/ENCFF201IJO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF245PXJ bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 100 ENCFF423CLL, ENCFF807MUK, ENCFF920YLL 3913336857 ENCODE Processing Pipeline 6f9ef5e1f83e7aac1ff45585bcac86e8 https://www.encodeproject.org/files/ENCFF245PXJ/@@download/ENCFF245PXJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF683DXC bam alignments ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF096BNX, ENCFF746BEA, ENCFF807MUK 4844006387 ENCODE Processing Pipeline 0cda1dff0e7d7b5ab1f3281a1b7aecde https://www.encodeproject.org/files/ENCFF683DXC/@@download/ENCFF683DXC.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF175TNH bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 100 ENCFF328DHW, ENCFF370TGN, ENCFF807MUK 2217456264 ENCODE Processing Pipeline fddfb26ffdf0dba142e96bf34512b16d https://www.encodeproject.org/files/ENCFF175TNH/@@download/ENCFF175TNH.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF720PEL bam alignments ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165TPB, ENCFF186WPX, ENCFF807MUK 3005638018 ENCODE Processing Pipeline eb27a3af123af7d972b1b1ac360cf979 https://www.encodeproject.org/files/ENCFF720PEL/@@download/ENCFF720PEL.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF405TSG bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 100 ENCFF230ILN, ENCFF807MUK, ENCFF952VLJ 3486018682 ENCODE Processing Pipeline d4be12a08e04de40d86c64f6bf81476a https://www.encodeproject.org/files/ENCFF405TSG/@@download/ENCFF405TSG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF429AJS bam alignments ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 100 ENCFF367BMZ, ENCFF697JWX, ENCFF807MUK 4957031101 ENCODE Processing Pipeline 7bb5230a39494b8e7f69c15ffd870f23 https://www.encodeproject.org/files/ENCFF429AJS/@@download/ENCFF429AJS.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF167RGS bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF239XFD, ENCFF807MUK, ENCFF843QOR 3246261874 ENCODE Processing Pipeline 05a7a5b5030d96d9e28ecca6d4ae4b35 https://www.encodeproject.org/files/ENCFF167RGS/@@download/ENCFF167RGS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF689KTQ bam alignments ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF030EJQ, ENCFF807MUK, ENCFF845NVE 4512438449 ENCODE Processing Pipeline 8d18dcbacf858d287c3bfc65879e530f https://www.encodeproject.org/files/ENCFF689KTQ/@@download/ENCFF689KTQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF162LLQ bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 50 ENCFF137GGC, ENCFF807MUK 1021738373 ENCODE Processing Pipeline e90e07b5d70cfb83fe7cdefdb45af2d4 https://www.encodeproject.org/files/ENCFF162LLQ/@@download/ENCFF162LLQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF131GPA bam alignments ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF939TTG 1106852999 ENCODE Processing Pipeline c86337970bf8e63d1ffa58d05fdd79da https://www.encodeproject.org/files/ENCFF131GPA/@@download/ENCFF131GPA.bam hg19 released low read depth, antibody characterized with exemption ENCFF709QNC bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF337FVY, ENCFF807MUK 201635267 ENCODE Processing Pipeline e7b301cc9231ada9a425c54aeee17c22 https://www.encodeproject.org/files/ENCFF709QNC/@@download/ENCFF709QNC.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF402MOS bam alignments ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF064RLS, ENCFF807MUK 251308754 ENCODE Processing Pipeline 64c2114fb2da67ffd6eefdc3da76139d https://www.encodeproject.org/files/ENCFF402MOS/@@download/ENCFF402MOS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF588VIM bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 100 ENCFF197ETF, ENCFF608EHV, ENCFF807MUK 3681205096 ENCODE Processing Pipeline 616ab18c4d288fe85e36fd8a718f1027 https://www.encodeproject.org/files/ENCFF588VIM/@@download/ENCFF588VIM.bam hg19 released mild to moderate bottlenecking ENCFF787QAB bam alignments ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 100 ENCFF134VGP, ENCFF160TXM, ENCFF807MUK 4302623716 ENCODE Processing Pipeline 83041f12e18e655ab0fd492bc4eea113 https://www.encodeproject.org/files/ENCFF787QAB/@@download/ENCFF787QAB.bam hg19 released mild to moderate bottlenecking ENCFF822VWX bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 100 ENCFF077ONG, ENCFF534ZOY, ENCFF807MUK 6564647407 ENCODE Processing Pipeline ae9670144d9b059741ae2c603efefaf4 https://www.encodeproject.org/files/ENCFF822VWX/@@download/ENCFF822VWX.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF753LGT bam alignments ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 100 ENCFF439DZE, ENCFF456ASW, ENCFF807MUK 6045758828 ENCODE Processing Pipeline c687fa85d13cd3c7ff3cb34812e582ea https://www.encodeproject.org/files/ENCFF753LGT/@@download/ENCFF753LGT.bam hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF019NMV bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF365NLR, ENCFF467AXX, ENCFF807MUK 3187410712 ENCODE Processing Pipeline 9dbc98e34ccaf4cbeda6170c4ebc6a6d https://www.encodeproject.org/files/ENCFF019NMV/@@download/ENCFF019NMV.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF534OTQ bam alignments ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF778OSN, ENCFF807MUK, ENCFF839XCL 4309000571 ENCODE Processing Pipeline bf6bfeb397e075b574b319a076657f91 https://www.encodeproject.org/files/ENCFF534OTQ/@@download/ENCFF534OTQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF775ZRK bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF253BVP, ENCFF649VGU, ENCFF807MUK 1272637203 ENCODE Processing Pipeline 4e3893e7191613f3d25b40dd4e3da005 https://www.encodeproject.org/files/ENCFF775ZRK/@@download/ENCFF775ZRK.bam hg19 released missing genetic modification characterization ENCFF702YSS bam alignments ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF073VHT, ENCFF564LFT, ENCFF807MUK 1503614871 ENCODE Processing Pipeline fb0efae89bafbaf3776018ea30a13a6f https://www.encodeproject.org/files/ENCFF702YSS/@@download/ENCFF702YSS.bam hg19 released missing genetic modification characterization ENCFF777WTJ bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 100 ENCFF245IWG, ENCFF807MUK, ENCFF936LDI 4719294160 ENCODE Processing Pipeline 740b648878c780dd1513e1e3acac4251 https://www.encodeproject.org/files/ENCFF777WTJ/@@download/ENCFF777WTJ.bam hg19 released ENCFF561GSY bam alignments ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 100 ENCFF156ZUZ, ENCFF738CWY, ENCFF807MUK 5115111229 ENCODE Processing Pipeline 6df891433469722061588ac80d2ad030 https://www.encodeproject.org/files/ENCFF561GSY/@@download/ENCFF561GSY.bam hg19 released ENCFF477POF bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 100 ENCFF640FTH, ENCFF807MUK, ENCFF909ZLD 5369230695 ENCODE Processing Pipeline 3c78b00b850224652880b3d77f6c6c06 https://www.encodeproject.org/files/ENCFF477POF/@@download/ENCFF477POF.bam hg19 released ENCFF044ZGL bam alignments ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 100 ENCFF121ACO, ENCFF250AVG, ENCFF807MUK 5618933179 ENCODE Processing Pipeline 562eac24a8607653fe8159053458b24d https://www.encodeproject.org/files/ENCFF044ZGL/@@download/ENCFF044ZGL.bam hg19 released ENCFF845ZLZ bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF428TYZ, ENCFF678JFY, ENCFF807MUK 1417309669 ENCODE Processing Pipeline 33b09c9c8fd506d834c37d26c05d7663 https://www.encodeproject.org/files/ENCFF845ZLZ/@@download/ENCFF845ZLZ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF552USH bam alignments ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF164RED, ENCFF272RDB, ENCFF807MUK 1106115991 ENCODE Processing Pipeline 27cadad3e64f800c7f0a1f66d91d7ced https://www.encodeproject.org/files/ENCFF552USH/@@download/ENCFF552USH.bam hg19 released control low read depth, missing genetic modification characterization ENCFF699MFO bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF693ECZ, ENCFF807MUK 556632370 ENCODE Processing Pipeline 4b24cf41224e947bb7fba564ee20dbf1 https://www.encodeproject.org/files/ENCFF699MFO/@@download/ENCFF699MFO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF987JXY bam alignments ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF525RRE, ENCFF807MUK 655112807 ENCODE Processing Pipeline 20348fa3759aabb6eb1fb2af8a6a2823 https://www.encodeproject.org/files/ENCFF987JXY/@@download/ENCFF987JXY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF233XVJ bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF634YGY, ENCFF807MUK 1208595209 ENCODE Processing Pipeline 6bf90f3475abe52959b293c5611d0bd0 https://www.encodeproject.org/files/ENCFF233XVJ/@@download/ENCFF233XVJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF430WBQ bam alignments ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF244DVW, ENCFF807MUK 1023915550 ENCODE Processing Pipeline cb131e11a561481291b3b8fc99878de6 https://www.encodeproject.org/files/ENCFF430WBQ/@@download/ENCFF430WBQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF698VEP bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 50 ENCFF807MUK, ENCFF822SMI 928744047 ENCODE Processing Pipeline d4b51f76e092833c44156063a67f22c0 https://www.encodeproject.org/files/ENCFF698VEP/@@download/ENCFF698VEP.bam hg19 released borderline replicate concordance, low read depth ENCFF437NVC bam alignments ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 50 ENCFF807MUK, ENCFF813TPE 1624435735 ENCODE Processing Pipeline d8bda1b8a8939167693b4b115a3e3da7 https://www.encodeproject.org/files/ENCFF437NVC/@@download/ENCFF437NVC.bam hg19 released borderline replicate concordance, low read depth ENCFF512JPN bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF055XKT, ENCFF807MUK, ENCFF968UUM 7846285260 ENCODE Processing Pipeline ec62d2bcca56ec3c7b2f9fc246b39caa https://www.encodeproject.org/files/ENCFF512JPN/@@download/ENCFF512JPN.bam hg19 released missing genetic modification characterization ENCFF187NQM bam alignments ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF123LEB, ENCFF229NRD, ENCFF807MUK 8802767033 ENCODE Processing Pipeline 0c6d08a9602d27c082c2548e0b7779f0 https://www.encodeproject.org/files/ENCFF187NQM/@@download/ENCFF187NQM.bam hg19 released missing genetic modification characterization ENCFF862RTJ bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF206ARZ, ENCFF807MUK 718270539 ENCODE Processing Pipeline 144b95e9b136afd3475ffe9564ee7434 https://www.encodeproject.org/files/ENCFF862RTJ/@@download/ENCFF862RTJ.bam hg19 released low read depth, moderate library complexity ENCFF742QOQ bam alignments ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF252RBF, ENCFF807MUK 754715535 ENCODE Processing Pipeline 6360ff2ee76218c03cdb37b9efd5caf7 https://www.encodeproject.org/files/ENCFF742QOQ/@@download/ENCFF742QOQ.bam hg19 released low read depth, moderate library complexity ENCFF316KPP bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 50 ENCFF807MUK, ENCFF898YVQ 953388408 ENCODE Processing Pipeline 6f68d741fb24b5e04e9dc0284f651347 https://www.encodeproject.org/files/ENCFF316KPP/@@download/ENCFF316KPP.bam hg19 released low read depth, antibody characterized with exemption ENCFF494PPW bam alignments ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 50 ENCFF211BUP, ENCFF807MUK 763649990 ENCODE Processing Pipeline 478e80cda63ef971bb7f0bd5edd347e2 https://www.encodeproject.org/files/ENCFF494PPW/@@download/ENCFF494PPW.bam hg19 released low read depth, antibody characterized with exemption ENCFF748DIW bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF862QDQ 765457821 ENCODE Processing Pipeline c8984cb355c0e48c15ff5d268459c790 https://www.encodeproject.org/files/ENCFF748DIW/@@download/ENCFF748DIW.bam hg19 released low read depth, antibody characterized with exemption ENCFF328CQA bam alignments ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 50 ENCFF221TOX, ENCFF807MUK 1059935076 ENCODE Processing Pipeline b27f486549583a87718892b6f276c619 https://www.encodeproject.org/files/ENCFF328CQA/@@download/ENCFF328CQA.bam hg19 released low read depth, antibody characterized with exemption ENCFF042TMG bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 50 ENCFF264HRE, ENCFF807MUK 638929594 ENCODE Processing Pipeline 0565e8b7d3d9e1c775a588011c78486a https://www.encodeproject.org/files/ENCFF042TMG/@@download/ENCFF042TMG.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF192MTR bam alignments ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 50 ENCFF182FSV, ENCFF807MUK 1311840478 ENCODE Processing Pipeline 597915355102894352f2f4822ea10724 https://www.encodeproject.org/files/ENCFF192MTR/@@download/ENCFF192MTR.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF064YNC bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 50 ENCFF705KCW, ENCFF807MUK 920439513 ENCODE Processing Pipeline d34f4563c4aa50fe62e9d74b6007de98 https://www.encodeproject.org/files/ENCFF064YNC/@@download/ENCFF064YNC.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF844NZR bam alignments ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 50 ENCFF017GOO, ENCFF807MUK 1494514489 ENCODE Processing Pipeline 99c74a92287095321046325f94b10b3e https://www.encodeproject.org/files/ENCFF844NZR/@@download/ENCFF844NZR.bam hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF674SQJ bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF468UEL, ENCFF807MUK 649226320 ENCODE Processing Pipeline 123df4d7e0558e7f2d9824942f2f1502 https://www.encodeproject.org/files/ENCFF674SQJ/@@download/ENCFF674SQJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF213IBE bam alignments ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF045UOH, ENCFF807MUK 538128588 ENCODE Processing Pipeline 036ac58c74ee9f547f227cccbd542ac0 https://www.encodeproject.org/files/ENCFF213IBE/@@download/ENCFF213IBE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF965CQC bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 76 ENCFF287ADI, ENCFF807MUK 1258641520 ENCODE Processing Pipeline ad55a500374dd28d5387e42e1db65d39 https://www.encodeproject.org/files/ENCFF965CQC/@@download/ENCFF965CQC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF553BFP bam alignments ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 76 ENCFF521IXY, ENCFF807MUK 1914057501 ENCODE Processing Pipeline 4304c9fcb1ef9bbf50ca82d01eafd212 https://www.encodeproject.org/files/ENCFF553BFP/@@download/ENCFF553BFP.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF318HXV bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF615SHE, ENCFF756SRO, ENCFF807MUK 3531474467 ENCODE Processing Pipeline 7790ae4437df262ae6ade9e76d2d5395 https://www.encodeproject.org/files/ENCFF318HXV/@@download/ENCFF318HXV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF899ORC bam alignments ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF249PNP, ENCFF514ZDJ, ENCFF807MUK 3234128108 ENCODE Processing Pipeline b4353341d5840348fb38fdfa595dc17e https://www.encodeproject.org/files/ENCFF899ORC/@@download/ENCFF899ORC.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF288XHQ bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF099ZTK, ENCFF684TOL, ENCFF807MUK 4406890939 ENCODE Processing Pipeline 2ff6a9483c7634166957799749097cbf https://www.encodeproject.org/files/ENCFF288XHQ/@@download/ENCFF288XHQ.bam hg19 released ENCFF376QZH bam alignments ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF085NFE, ENCFF214JGI, ENCFF807MUK 4253810044 ENCODE Processing Pipeline 1ed240057a699f20a582c5f95e705b0b https://www.encodeproject.org/files/ENCFF376QZH/@@download/ENCFF376QZH.bam hg19 released ENCFF336YLG bam alignments ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF153BBD, ENCFF202MPS, ENCFF807MUK 4032182037 ENCODE Processing Pipeline 0e85b710153dbaba2a2cfa66d7af6f86 https://www.encodeproject.org/files/ENCFF336YLG/@@download/ENCFF336YLG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF546PNW bam alignments ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF782COM, ENCFF807MUK, ENCFF934TSI 3933559535 ENCODE Processing Pipeline 881c41974a8603355b22b370b3e5c960 https://www.encodeproject.org/files/ENCFF546PNW/@@download/ENCFF546PNW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF973SCA bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 100 ENCFF031HGS, ENCFF279UPH, ENCFF807MUK 4283910626 ENCODE Processing Pipeline 31a29d1a450363b3192c46e286506502 https://www.encodeproject.org/files/ENCFF973SCA/@@download/ENCFF973SCA.bam hg19 released borderline replicate concordance ENCFF566XEP bam alignments ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 100 ENCFF030BFQ, ENCFF748NXL, ENCFF807MUK 6810454316 ENCODE Processing Pipeline 4899da5d9ae00ad87f878005b614e030 https://www.encodeproject.org/files/ENCFF566XEP/@@download/ENCFF566XEP.bam hg19 released borderline replicate concordance ENCFF214ARE bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF156UAQ, ENCFF498MQF, ENCFF807MUK 2950767799 ENCODE Processing Pipeline c1179be7f1b2b2b2088d5575a5c81f5e https://www.encodeproject.org/files/ENCFF214ARE/@@download/ENCFF214ARE.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF507XLD bam alignments ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF202GQI, ENCFF291XCZ, ENCFF807MUK 5490844705 ENCODE Processing Pipeline 3b08cedd8c4f924360023e5d05c07613 https://www.encodeproject.org/files/ENCFF507XLD/@@download/ENCFF507XLD.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF289GAC bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF070RQL, ENCFF807MUK 1820113927 ENCODE Processing Pipeline eaa6edbcfb9dde7124fcd3364d518b32 https://www.encodeproject.org/files/ENCFF289GAC/@@download/ENCFF289GAC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF322CDL bam alignments ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF779OCL, ENCFF807MUK 1076113461 ENCODE Processing Pipeline f9e88d39a5e19a5f884be992f59a0264 https://www.encodeproject.org/files/ENCFF322CDL/@@download/ENCFF322CDL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF468AEG bam alignments ENCSR668BTN ChIP-seq UBERON:0001515 thoracic aorta tissue Homo sapiens CTCF-human DNA False 2017-03-14 ENCODE 1 100 ENCFF031DNI, ENCFF184VEG, ENCFF543XYT, ENCFF807MUK, ENCFF937YTY 4530274205 ENCODE Processing Pipeline c1c4e3224b43741eae8cd4d3232841b9 https://www.encodeproject.org/files/ENCFF468AEG/@@download/ENCFF468AEG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF228QPG bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF311SGU, ENCFF647KQT, ENCFF807MUK 3546147050 ENCODE Processing Pipeline f2b0dc53fe26ea29c9afbb0e85148afa https://www.encodeproject.org/files/ENCFF228QPG/@@download/ENCFF228QPG.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF102OVJ bam alignments ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF497JNW, ENCFF807MUK, ENCFF842CFV 2951119985 ENCODE Processing Pipeline f31225be3421069ea94ed7b80a247634 https://www.encodeproject.org/files/ENCFF102OVJ/@@download/ENCFF102OVJ.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF050ZWR bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 100 ENCFF044YZK, ENCFF807MUK, ENCFF829JEX 3728434340 ENCODE Processing Pipeline c39c98056f4cdfbe52e6857e02e7fc60 https://www.encodeproject.org/files/ENCFF050ZWR/@@download/ENCFF050ZWR.bam hg19 released low read depth ENCFF842SKP bam alignments ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 100 ENCFF250LUM, ENCFF307RHE, ENCFF807MUK 3471689816 ENCODE Processing Pipeline 7173a0160ccece05ef503cf77ec5c008 https://www.encodeproject.org/files/ENCFF842SKP/@@download/ENCFF842SKP.bam hg19 released low read depth ENCFF825RNP bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EXC, ENCFF807MUK 920863155 ENCODE Processing Pipeline f32a77be794c4c1541c41fc7107215d8 https://www.encodeproject.org/files/ENCFF825RNP/@@download/ENCFF825RNP.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF257TLH bam alignments ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EWY, ENCFF807MUK 829347407 ENCODE Processing Pipeline f9841a987db4555c5ed22d13440ac6b9 https://www.encodeproject.org/files/ENCFF257TLH/@@download/ENCFF257TLH.bam hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF206GMY bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF261LRY, ENCFF807MUK 1309809224 ENCODE Processing Pipeline e37c5868cf2ba27dbb6a8043086b63b2 https://www.encodeproject.org/files/ENCFF206GMY/@@download/ENCFF206GMY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961GTC bam alignments ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF402KIC, ENCFF807MUK 1742772147 ENCODE Processing Pipeline fce6fe3b178438b0d06b1881412a1b13 https://www.encodeproject.org/files/ENCFF961GTC/@@download/ENCFF961GTC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF447QIZ bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 76 ENCFF041ZHS, ENCFF807MUK 1136396904 ENCODE Processing Pipeline 7c92bfb5dae299636e62f4b4795c1c92 https://www.encodeproject.org/files/ENCFF447QIZ/@@download/ENCFF447QIZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF456NXL bam alignments ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 76 ENCFF284DII, ENCFF807MUK 1406631309 ENCODE Processing Pipeline 3de20937e4a6dfbd0f71e4c898f5ea8a https://www.encodeproject.org/files/ENCFF456NXL/@@download/ENCFF456NXL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF370DPP bam alignments ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF106TQC, ENCFF774SIF, ENCFF807MUK 5687484560 ENCODE Processing Pipeline eafe96ac6177debf1340bac84fced490 https://www.encodeproject.org/files/ENCFF370DPP/@@download/ENCFF370DPP.bam hg19 released antibody characterized with exemption ENCFF080WMH bam alignments ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF372GPW, ENCFF807MUK, ENCFF881VQU 3974602133 ENCODE Processing Pipeline 17d3fa31f67101ee267d9bc284053a17 https://www.encodeproject.org/files/ENCFF080WMH/@@download/ENCFF080WMH.bam hg19 released control low read depth, antibody characterized with exemption ENCFF328RQW bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF234XIN, ENCFF373KIQ, ENCFF807MUK 4290986914 ENCODE Processing Pipeline 211563978d44a6aff33fd948b498968b https://www.encodeproject.org/files/ENCFF328RQW/@@download/ENCFF328RQW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF764JDZ bam alignments ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF681BWM, ENCFF807MUK, ENCFF909TNH 5314128578 ENCODE Processing Pipeline 1ac021fbba25d4891d24ca26cb0ff269 https://www.encodeproject.org/files/ENCFF764JDZ/@@download/ENCFF764JDZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF690CWG bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF268XRY, ENCFF642TLW, ENCFF807MUK 3318211048 ENCODE Processing Pipeline b28f764a8693e61bb0fc192f28d10c51 https://www.encodeproject.org/files/ENCFF690CWG/@@download/ENCFF690CWG.bam hg19 released low read depth ENCFF411PRP bam alignments ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF455UQA, ENCFF714KWX, ENCFF807MUK 2929738879 ENCODE Processing Pipeline 57865b66061b4d2a9bf47c96f32ce65d https://www.encodeproject.org/files/ENCFF411PRP/@@download/ENCFF411PRP.bam hg19 released low read depth ENCFF018ELX bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF171UDL, ENCFF807MUK 1730151462 ENCODE Processing Pipeline 1df025c6081d5372e58db05f39db84f7 https://www.encodeproject.org/files/ENCFF018ELX/@@download/ENCFF018ELX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF231NPN bam alignments ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF643ZXX, ENCFF807MUK 1657725749 ENCODE Processing Pipeline 42f9a42f57986ed108ee19d84a31567b https://www.encodeproject.org/files/ENCFF231NPN/@@download/ENCFF231NPN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF008CNQ bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 100 ENCFF336PPY, ENCFF514VXT, ENCFF807MUK 3396712792 ENCODE Processing Pipeline 4748f534b6048be699a27d5e7dde779c https://www.encodeproject.org/files/ENCFF008CNQ/@@download/ENCFF008CNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF850IFD bam alignments ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 100 ENCFF255DXC, ENCFF383KIY, ENCFF807MUK 5021370735 ENCODE Processing Pipeline 07d043f9c4eea1cedaa185c3c35ef590 https://www.encodeproject.org/files/ENCFF850IFD/@@download/ENCFF850IFD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF544NMW bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 4 50 ENCFF097AUF, ENCFF680CYZ, ENCFF807MUK 1244037834 ENCODE Processing Pipeline e6722851bffe09c345581ffd455f7d4c https://www.encodeproject.org/files/ENCFF544NMW/@@download/ENCFF544NMW.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF812ESP bam alignments ENCSR125ZYC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF9-human DNA False 2016-06-13 ENCODE 3 50 ENCFF548OMB, ENCFF611RZZ, ENCFF807MUK 831253526 ENCODE Processing Pipeline abf1fc61b258ccf667db45a4d2a212d1 https://www.encodeproject.org/files/ENCFF812ESP/@@download/ENCFF812ESP.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF146NJI bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF559LBE, ENCFF627SNU, ENCFF807MUK 5122963769 ENCODE Processing Pipeline 97ef58cfa9b0a5ddb7686195c2df8840 https://www.encodeproject.org/files/ENCFF146NJI/@@download/ENCFF146NJI.bam hg19 released ENCFF952LEG bam alignments ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF643VJS, ENCFF807MUK, ENCFF961ECZ 4388039662 ENCODE Processing Pipeline b71c426c57c8d9a40303e3847ecad44f https://www.encodeproject.org/files/ENCFF952LEG/@@download/ENCFF952LEG.bam hg19 released ENCFF763BJA bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF689WAA, ENCFF807MUK 1241881369 ENCODE Processing Pipeline c3b09e37d7c7595b888d84c1647962e0 https://www.encodeproject.org/files/ENCFF763BJA/@@download/ENCFF763BJA.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF348RHT bam alignments ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF972ZUD 1350610150 ENCODE Processing Pipeline 2ca8451e5a57728ddc6225a97e085b91 https://www.encodeproject.org/files/ENCFF348RHT/@@download/ENCFF348RHT.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF057NCM bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 100 ENCFF241YMF, ENCFF807MUK, ENCFF941CCE 5191782993 ENCODE Processing Pipeline d01b9db2f5c7f3ac88bfb1bb963a25e4 https://www.encodeproject.org/files/ENCFF057NCM/@@download/ENCFF057NCM.bam hg19 released antibody characterized with exemption ENCFF891JGT bam alignments ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 100 ENCFF292TZE, ENCFF710ZBC, ENCFF807MUK 5227199260 ENCODE Processing Pipeline ae03cecee914c38b6f30ac5d62c65d72 https://www.encodeproject.org/files/ENCFF891JGT/@@download/ENCFF891JGT.bam hg19 released antibody characterized with exemption ENCFF877WMR bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF184ZLD, ENCFF560POR, ENCFF807MUK 1268559997 ENCODE Processing Pipeline c77d138f16437d1eeeaf76b40c65b288 https://www.encodeproject.org/files/ENCFF877WMR/@@download/ENCFF877WMR.bam hg19 released control low read depth, missing genetic modification characterization ENCFF471EXM bam alignments ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF203HJN, ENCFF804ROV, ENCFF807MUK 1386729352 ENCODE Processing Pipeline 6751ae57266729afcf328a64ed71f5d9 https://www.encodeproject.org/files/ENCFF471EXM/@@download/ENCFF471EXM.bam hg19 released control low read depth, missing genetic modification characterization ENCFF849SWB bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPM, ENCFF002DUA, ENCFF807MUK 6237747688 ENCODE Processing Pipeline aa372d5953b5de7a2bc84f467b0fb4d9 https://www.encodeproject.org/files/ENCFF849SWB/@@download/ENCFF849SWB.bam hg19 released mild to moderate bottlenecking ENCFF952MSU bam alignments ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPJ, ENCFF002EGF, ENCFF807MUK 6820230208 ENCODE Processing Pipeline b481fd0016b01cae4a349d60b7656bc1 https://www.encodeproject.org/files/ENCFF952MSU/@@download/ENCFF952MSU.bam hg19 released mild to moderate bottlenecking ENCFF446LZB bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF670UOV, ENCFF807MUK, ENCFF841OOC 3447122804 ENCODE Processing Pipeline c7bcfb102866a0051954179a209aa3e8 https://www.encodeproject.org/files/ENCFF446LZB/@@download/ENCFF446LZB.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF264TYT bam alignments ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF058FFZ, ENCFF674GQJ, ENCFF807MUK 3559327177 ENCODE Processing Pipeline 38dc8ea35b12837bc2a7237614cfb64d https://www.encodeproject.org/files/ENCFF264TYT/@@download/ENCFF264TYT.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF776IMT bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF807MUK 664998125 ENCODE Processing Pipeline 94015738bef00c905b8093d5bb9a0bd0 https://www.encodeproject.org/files/ENCFF776IMT/@@download/ENCFF776IMT.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF805KOB bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF769ICW, ENCFF807MUK 1199184691 ENCODE Processing Pipeline 563fd495c4ec69cda385dc677d313a70 https://www.encodeproject.org/files/ENCFF805KOB/@@download/ENCFF805KOB.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF567MOA bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF188ZYE, ENCFF807MUK 664998153 ENCODE Processing Pipeline b6ef2a0b32f524937a7286de6b30cc39 https://www.encodeproject.org/files/ENCFF567MOA/@@download/ENCFF567MOA.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF226JIO bam alignments ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF769ICW, ENCFF807MUK 1199184720 ENCODE Processing Pipeline 007a10b14c1a3a767be39fab57f36900 https://www.encodeproject.org/files/ENCFF226JIO/@@download/ENCFF226JIO.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF986GTB bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPF, ENCFF002EFZ, ENCFF807MUK 4802295089 ENCODE Processing Pipeline eddb474b557c2506a936f5d7d9e21f8c https://www.encodeproject.org/files/ENCFF986GTB/@@download/ENCFF986GTB.bam hg19 released mild to moderate bottlenecking ENCFF615FDE bam alignments ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPA, ENCFF002EFX, ENCFF807MUK 4393017795 ENCODE Processing Pipeline 5cc8856b1225ffc3318ae237ea0cdc30 https://www.encodeproject.org/files/ENCFF615FDE/@@download/ENCFF615FDE.bam hg19 released mild to moderate bottlenecking ENCFF719ASG bam alignments ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF245QAX, ENCFF461DSK, ENCFF807MUK 2584802167 ENCODE Processing Pipeline 53135d487a230d142d9d9762da9011f4 https://www.encodeproject.org/files/ENCFF719ASG/@@download/ENCFF719ASG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF739CZU bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF167KLS, ENCFF429BVY, ENCFF807MUK 1117597375 ENCODE Processing Pipeline f11e7d9d70f48adc76120f23fb9c22cc https://www.encodeproject.org/files/ENCFF739CZU/@@download/ENCFF739CZU.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF153HRH bam alignments ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF807MUK, ENCFF966WHJ 2481249284 ENCODE Processing Pipeline aee93eb3b2a8f9e158e85745b04653fd https://www.encodeproject.org/files/ENCFF153HRH/@@download/ENCFF153HRH.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF149VZU bam alignments ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 76 ENCFF006VGP, ENCFF328YJN, ENCFF807MUK 4717508116 ENCODE Processing Pipeline 69ba8650217d2aefe5431b569913ebf2 https://www.encodeproject.org/files/ENCFF149VZU/@@download/ENCFF149VZU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF875VJU bam alignments ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF014DFT, ENCFF699OSQ, ENCFF807MUK 5670621423 ENCODE Processing Pipeline d19ad595968be35084f2becaca18bafd https://www.encodeproject.org/files/ENCFF875VJU/@@download/ENCFF875VJU.bam hg19 released control low read depth, antibody characterized with exemption ENCFF948RVR bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 100 ENCFF807MUK, ENCFF854CCC, ENCFF881JDL 3347954121 ENCODE Processing Pipeline c29a4800762a56eef472b279e60eb76c https://www.encodeproject.org/files/ENCFF948RVR/@@download/ENCFF948RVR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF262STC bam alignments ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 100 ENCFF321LCC, ENCFF581MDG, ENCFF807MUK 5486195713 ENCODE Processing Pipeline edd5c50c63d9de67f51e5136bf804ce0 https://www.encodeproject.org/files/ENCFF262STC/@@download/ENCFF262STC.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF282YII bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 100 ENCFF435JEO, ENCFF443EYG, ENCFF807MUK 4201418841 ENCODE Processing Pipeline 883d7e84e2f28e672ab10721ab0982a7 https://www.encodeproject.org/files/ENCFF282YII/@@download/ENCFF282YII.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF682WTZ bam alignments ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 100 ENCFF224PWB, ENCFF337XLT, ENCFF807MUK 5990476621 ENCODE Processing Pipeline cd7dd1edddeef1422429114acd57f5c5 https://www.encodeproject.org/files/ENCFF682WTZ/@@download/ENCFF682WTZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF935JGC bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 76 ENCFF103FNH, ENCFF383JIP, ENCFF807MUK 3650904638 ENCODE Processing Pipeline 48ea03c31a03d177977823303f650199 https://www.encodeproject.org/files/ENCFF935JGC/@@download/ENCFF935JGC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF692UAE bam alignments ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 76 ENCFF807MUK, ENCFF919EOD, ENCFF956SSU 3696732385 ENCODE Processing Pipeline 03b5fa899b834a7d53cb8286c284b06d https://www.encodeproject.org/files/ENCFF692UAE/@@download/ENCFF692UAE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF928FSC bam alignments ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF148DET, ENCFF365XKE, ENCFF807MUK 3235240377 ENCODE Processing Pipeline 60dd0d52eb99d911feb7940d57e5344e https://www.encodeproject.org/files/ENCFF928FSC/@@download/ENCFF928FSC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF714SYF bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 100 ENCFF053MVO, ENCFF807MUK, ENCFF845QUV 5278853378 ENCODE Processing Pipeline 56da2a2c5c2be1a8fcc64703f0f87f21 https://www.encodeproject.org/files/ENCFF714SYF/@@download/ENCFF714SYF.bam hg19 released mild to moderate bottlenecking ENCFF494NAS bam alignments ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 100 ENCFF172SIG, ENCFF482CBG, ENCFF807MUK 5417035346 ENCODE Processing Pipeline 5b696619702010df2b4fec11b27f1c9e https://www.encodeproject.org/files/ENCFF494NAS/@@download/ENCFF494NAS.bam hg19 released mild to moderate bottlenecking ENCFF371NEP bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF438SXQ, ENCFF807MUK 1782617473 ENCODE Processing Pipeline 0ec581d657bf198969d586cebef5b291 https://www.encodeproject.org/files/ENCFF371NEP/@@download/ENCFF371NEP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF868KHL bam alignments ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF633XUQ, ENCFF807MUK 1860643506 ENCODE Processing Pipeline 3a048bd6f003e04b9bdec6651ea6d1d6 https://www.encodeproject.org/files/ENCFF868KHL/@@download/ENCFF868KHL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF761ADG bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158TRB, ENCFF737EQI, ENCFF807MUK 3413154926 ENCODE Processing Pipeline cf1dc60c897df42f225124834fbd01d2 https://www.encodeproject.org/files/ENCFF761ADG/@@download/ENCFF761ADG.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF605EYP bam alignments ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 100 ENCFF235JMI, ENCFF807MUK, ENCFF993LLQ 9019722965 ENCODE Processing Pipeline 418999710f2e14b42497c87a73ae07de https://www.encodeproject.org/files/ENCFF605EYP/@@download/ENCFF605EYP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF994LQW bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 50 ENCFF450YAP, ENCFF807MUK 1027060412 ENCODE Processing Pipeline 9fc8e64cf3d18d575a4bf25fa3cc2866 https://www.encodeproject.org/files/ENCFF994LQW/@@download/ENCFF994LQW.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF568JWW bam alignments ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 50 ENCFF557MVE, ENCFF807MUK 978807838 ENCODE Processing Pipeline 42b0281e81d54d9a63754c5eb63d018a https://www.encodeproject.org/files/ENCFF568JWW/@@download/ENCFF568JWW.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF506GHT bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 50 ENCFF291CUA, ENCFF807MUK 771021370 ENCODE Processing Pipeline fb2dc92d7405155a7a8dd9bc7878e2ed https://www.encodeproject.org/files/ENCFF506GHT/@@download/ENCFF506GHT.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF242CKK bam alignments ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 50 ENCFF131MJT, ENCFF807MUK 1940787352 ENCODE Processing Pipeline 9eb844526b9b7a4b64b29e9a124374ea https://www.encodeproject.org/files/ENCFF242CKK/@@download/ENCFF242CKK.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF991LRY bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF132PDR, ENCFF807MUK 805243507 ENCODE Processing Pipeline 84edea1c709720ab79080f2a0353bdad https://www.encodeproject.org/files/ENCFF991LRY/@@download/ENCFF991LRY.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF475SVL bam alignments ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF389LQC, ENCFF807MUK 723432578 ENCODE Processing Pipeline ef7c8a30dfa6d716449517f934a71eb9 https://www.encodeproject.org/files/ENCFF475SVL/@@download/ENCFF475SVL.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF428WCT bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 50 ENCFF003OUL, ENCFF807MUK 1274117031 ENCODE Processing Pipeline 54d8ad1090f8da1deb7cc74e305eb0d1 https://www.encodeproject.org/files/ENCFF428WCT/@@download/ENCFF428WCT.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF409VUE bam alignments ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 50 ENCFF390HDY, ENCFF807MUK 1194440872 ENCODE Processing Pipeline fe0fe568ed08004709ca0257e660bf49 https://www.encodeproject.org/files/ENCFF409VUE/@@download/ENCFF409VUE.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF613DSA bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 76 ENCFF500QDP, ENCFF807MUK 1162994412 ENCODE Processing Pipeline 22aea8c2a744ccdf99a0173ee4c10e43 https://www.encodeproject.org/files/ENCFF613DSA/@@download/ENCFF613DSA.bam hg19 released low read depth ENCFF177HNF bam alignments ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 76 ENCFF525YYN, ENCFF807MUK 1107658291 ENCODE Processing Pipeline 4605f4ec232fcd8ef5434af6d7d491b9 https://www.encodeproject.org/files/ENCFF177HNF/@@download/ENCFF177HNF.bam hg19 released low read depth ENCFF950BSF bam alignments ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 100 ENCFF121YCH, ENCFF807MUK, ENCFF950ZNN 2989437637 ENCODE Processing Pipeline 1a96f506adb2fd18416270925779eda0 https://www.encodeproject.org/files/ENCFF950BSF/@@download/ENCFF950BSF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF829QRY bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 100 ENCFF543AIK, ENCFF807MUK, ENCFF865YPR 4458037781 ENCODE Processing Pipeline 6acfb72aca06bbc627a05904ffa2b4a3 https://www.encodeproject.org/files/ENCFF829QRY/@@download/ENCFF829QRY.bam hg19 released antibody characterized with exemption ENCFF448ALJ bam alignments ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 100 ENCFF730YIK, ENCFF807MUK, ENCFF861REO 4029251972 ENCODE Processing Pipeline c242c39d56d66a3101990689f44302dd https://www.encodeproject.org/files/ENCFF448ALJ/@@download/ENCFF448ALJ.bam hg19 released antibody characterized with exemption ENCFF107VJA bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 50 ENCFF232WOY, ENCFF807MUK 1310208680 ENCODE Processing Pipeline 25779f740041eb74083d794af4963c63 https://www.encodeproject.org/files/ENCFF107VJA/@@download/ENCFF107VJA.bam hg19 released borderline replicate concordance, low read depth ENCFF708IYO bam alignments ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 50 ENCFF454EYI, ENCFF807MUK 1165039842 ENCODE Processing Pipeline 1933f2cc439827f690a6bc477d4b6cbf https://www.encodeproject.org/files/ENCFF708IYO/@@download/ENCFF708IYO.bam hg19 released borderline replicate concordance, low read depth ENCFF267MTS bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 76 ENCFF580BBC, ENCFF807MUK 1493916024 ENCODE Processing Pipeline c742f4bfcda991a7fc29e550df2e62de https://www.encodeproject.org/files/ENCFF267MTS/@@download/ENCFF267MTS.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF511WMB bam alignments ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 76 ENCFF373AYF, ENCFF807MUK 1786629475 ENCODE Processing Pipeline f6dc696522ceb4947ec9da82c279e818 https://www.encodeproject.org/files/ENCFF511WMB/@@download/ENCFF511WMB.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF344XAW bam alignments ENCSR206ETG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF210GUT, ENCFF396OEK, ENCFF646RMM, ENCFF807MUK, ENCFF991PJC 4824153571 ENCODE Processing Pipeline 57fd5fe4978bf8822d43ed55c8ef3549 https://www.encodeproject.org/files/ENCFF344XAW/@@download/ENCFF344XAW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF668QAW bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 76 ENCFF101NLP, ENCFF807MUK 1760280429 ENCODE Processing Pipeline 1ee9bb6c380b607a4d881b5ecfb7236b https://www.encodeproject.org/files/ENCFF668QAW/@@download/ENCFF668QAW.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF466PBF bam alignments ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 76 ENCFF249JNC, ENCFF807MUK 2025379138 ENCODE Processing Pipeline deca17265e24ea992e7bf1a9415f6459 https://www.encodeproject.org/files/ENCFF466PBF/@@download/ENCFF466PBF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF929HAN bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 100 ENCFF392MVW, ENCFF567TRK, ENCFF807MUK 7306220624 ENCODE Processing Pipeline 442bef002de0713f089303acdd0faf0c https://www.encodeproject.org/files/ENCFF929HAN/@@download/ENCFF929HAN.bam hg19 released missing genetic modification characterization ENCFF309ASH bam alignments ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 100 ENCFF028NOQ, ENCFF496CZA, ENCFF807MUK 6152579785 ENCODE Processing Pipeline edfe044de564c6b47513f2daebdaedd0 https://www.encodeproject.org/files/ENCFF309ASH/@@download/ENCFF309ASH.bam hg19 released missing genetic modification characterization ENCFF560RIF bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 3 100 ENCFF173TVY, ENCFF428YAW, ENCFF807MUK 5609689016 ENCODE Processing Pipeline 7b490aac95b9de98b898977215bbf328 https://www.encodeproject.org/files/ENCFF560RIF/@@download/ENCFF560RIF.bam hg19 released antibody characterized with exemption ENCFF934LPP bam alignments ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF521BUZ, ENCFF807MUK, ENCFF993ZKD 4690367946 ENCODE Processing Pipeline 4e27be6a35ffa1d45a9c074cb8bae3de https://www.encodeproject.org/files/ENCFF934LPP/@@download/ENCFF934LPP.bam hg19 released antibody characterized with exemption ENCFF596VZQ bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 100 ENCFF642JDC, ENCFF807MUK, ENCFF845RNP 5025705878 ENCODE Processing Pipeline 18768f7303114d3db14f59df349447bb https://www.encodeproject.org/files/ENCFF596VZQ/@@download/ENCFF596VZQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF274SQL bam alignments ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 100 ENCFF388ZHD, ENCFF606KRS, ENCFF807MUK 9851737924 ENCODE Processing Pipeline 652ae4ff1a42b162a879102a7853bf84 https://www.encodeproject.org/files/ENCFF274SQL/@@download/ENCFF274SQL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF952ZLK bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF426JLQ, ENCFF638DGT, ENCFF807MUK 4618589414 ENCODE Processing Pipeline 97ffe7292b9a1c3016c61fd95447411a https://www.encodeproject.org/files/ENCFF952ZLK/@@download/ENCFF952ZLK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF535YPL bam alignments ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF395NAD, ENCFF807MUK, ENCFF901MLH 5831833730 ENCODE Processing Pipeline 80a490643908004365403c5de4095896 https://www.encodeproject.org/files/ENCFF535YPL/@@download/ENCFF535YPL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF176ZRH bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF170AOL, ENCFF807MUK 1138189694 ENCODE Processing Pipeline e7718ca50b5a77a3d9b9fd12e46f861f https://www.encodeproject.org/files/ENCFF176ZRH/@@download/ENCFF176ZRH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380CUY bam alignments ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF149FLF, ENCFF807MUK 1123743199 ENCODE Processing Pipeline 37bd780e62fd059ff472bb9d80d6ffb1 https://www.encodeproject.org/files/ENCFF380CUY/@@download/ENCFF380CUY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF466DBM bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 100 ENCFF237EAI, ENCFF807MUK, ENCFF907HHY 4685546093 ENCODE Processing Pipeline 08e4455f00c73d3aced728b0a9adca63 https://www.encodeproject.org/files/ENCFF466DBM/@@download/ENCFF466DBM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF593EWE bam alignments ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 100 ENCFF608RBJ, ENCFF807MUK, ENCFF870NUU 4033549977 ENCODE Processing Pipeline 7f832029626014bd59b41d543849151e https://www.encodeproject.org/files/ENCFF593EWE/@@download/ENCFF593EWE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF172WFR bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EVV, ENCFF807MUK 970167447 ENCODE Processing Pipeline 55e3c0bc237a8774081b4342eaf83a2a https://www.encodeproject.org/files/ENCFF172WFR/@@download/ENCFF172WFR.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF434WMV bam alignments ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVR, ENCFF807MUK 867173967 ENCODE Processing Pipeline 570016836f1180f04a38aa31ad4a8d18 https://www.encodeproject.org/files/ENCFF434WMV/@@download/ENCFF434WMV.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF687QZJ bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 76 ENCFF278POP, ENCFF807MUK 1542241261 ENCODE Processing Pipeline b1463768631ec01433b202a27426d2d9 https://www.encodeproject.org/files/ENCFF687QZJ/@@download/ENCFF687QZJ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF199DBR bam alignments ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 76 ENCFF057ISV, ENCFF807MUK 2144396910 ENCODE Processing Pipeline 6871821beb0d3396d2cc035ed17920f6 https://www.encodeproject.org/files/ENCFF199DBR/@@download/ENCFF199DBR.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF778MHV bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 100 ENCFF630BDU, ENCFF807MUK, ENCFF847AWQ 3646987895 ENCODE Processing Pipeline a9dd7fd8597a3ee199c4568d11389a9a https://www.encodeproject.org/files/ENCFF778MHV/@@download/ENCFF778MHV.bam hg19 released antibody characterized with exemption ENCFF517CCI bam alignments ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 100 ENCFF264ZQH, ENCFF807MUK, ENCFF998JJX 4245405693 ENCODE Processing Pipeline 960149ead0da2609fc0aa9babaddb698 https://www.encodeproject.org/files/ENCFF517CCI/@@download/ENCFF517CCI.bam hg19 released antibody characterized with exemption ENCFF629YQB bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 50 ENCFF348HJC, ENCFF807MUK 2065181109 ENCODE Processing Pipeline 75a457e2196b9c0c13b827ca87ec948f https://www.encodeproject.org/files/ENCFF629YQB/@@download/ENCFF629YQB.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF468OBD bam alignments ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 50 ENCFF768KAE, ENCFF807MUK 1943264764 ENCODE Processing Pipeline f7ce4215b21b56fed3f438a9a44662a8 https://www.encodeproject.org/files/ENCFF468OBD/@@download/ENCFF468OBD.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF369RCJ bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF784EQQ, ENCFF807MUK 1710160872 ENCODE Processing Pipeline 23bc8dd0b9399b4646c9c0e2acea7a92 https://www.encodeproject.org/files/ENCFF369RCJ/@@download/ENCFF369RCJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF778TOE bam alignments ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF908GXH 1794815302 ENCODE Processing Pipeline de64af9df234476a37160412d7f760dd https://www.encodeproject.org/files/ENCFF778TOE/@@download/ENCFF778TOE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF365ZKI bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF018YWZ, ENCFF220PBO, ENCFF807MUK 4156629063 ENCODE Processing Pipeline 115500dbaa6538a2fccb60a6afba957b https://www.encodeproject.org/files/ENCFF365ZKI/@@download/ENCFF365ZKI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF670CVM bam alignments ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA False 2018-01-26 ENCODE 4 100 ENCFF029JZY, ENCFF455XVE, ENCFF807MUK 3496711699 ENCODE Processing Pipeline 356f37452b0c8ea2e209e4c12e4a81ea https://www.encodeproject.org/files/ENCFF670CVM/@@download/ENCFF670CVM.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF584VTC bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF257FGF, ENCFF807MUK 1300329468 ENCODE Processing Pipeline cb4ea872ced408d65f6d33ec445b2b5a https://www.encodeproject.org/files/ENCFF584VTC/@@download/ENCFF584VTC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF079UPJ bam alignments ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF772XOL, ENCFF807MUK 1740457709 ENCODE Processing Pipeline c15381f696699727cdeadcea5dca24dc https://www.encodeproject.org/files/ENCFF079UPJ/@@download/ENCFF079UPJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF754VKI bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 76 ENCFF753ADO, ENCFF807MUK 1640726578 ENCODE Processing Pipeline 3a7de9dede9183457b1f76bbaaa15784 https://www.encodeproject.org/files/ENCFF754VKI/@@download/ENCFF754VKI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970BNS bam alignments ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079AGT, ENCFF807MUK 2714457672 ENCODE Processing Pipeline d8e3aaa515af2b8a5144e7b2c6d55a00 https://www.encodeproject.org/files/ENCFF970BNS/@@download/ENCFF970BNS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF500GNW bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 50 ENCFF426DFS, ENCFF807MUK 811862923 ENCODE Processing Pipeline 751976903f70f3ec33e30d1314028bc4 https://www.encodeproject.org/files/ENCFF500GNW/@@download/ENCFF500GNW.bam hg19 released low read depth, missing genetic modification characterization ENCFF804GZU bam alignments ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 50 ENCFF215QBP, ENCFF807MUK 841766508 ENCODE Processing Pipeline c8b0e5f0b3de657348a08c08a5bcf35a https://www.encodeproject.org/files/ENCFF804GZU/@@download/ENCFF804GZU.bam hg19 released low read depth, missing genetic modification characterization ENCFF101BQK bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF068PBQ, ENCFF807MUK 2047542572 ENCODE Processing Pipeline da665246ad8c38a316687138098d094e https://www.encodeproject.org/files/ENCFF101BQK/@@download/ENCFF101BQK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378PCU bam alignments ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF383FTW, ENCFF807MUK 1926843228 ENCODE Processing Pipeline 39ede5d027fa29e0eb2f028516c54190 https://www.encodeproject.org/files/ENCFF378PCU/@@download/ENCFF378PCU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF921NVQ bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF714SGI, ENCFF807MUK 1651157280 ENCODE Processing Pipeline 75c8aa077b0a0482a9b2b0846c3dca5a https://www.encodeproject.org/files/ENCFF921NVQ/@@download/ENCFF921NVQ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF887RJC bam alignments ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF247HTV, ENCFF807MUK 1683641791 ENCODE Processing Pipeline 64efb6079c9f14372ba6c4aa9221dfa8 https://www.encodeproject.org/files/ENCFF887RJC/@@download/ENCFF887RJC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF309III bam alignments ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF151IHT, ENCFF592DVR, ENCFF807MUK 2982663962 ENCODE Processing Pipeline bef0ad82009fe6adba872151545ae44e https://www.encodeproject.org/files/ENCFF309III/@@download/ENCFF309III.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF288KSL bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF968PBN 1216851083 ENCODE Processing Pipeline e822e9f22af17af022caa9663bbc5388 https://www.encodeproject.org/files/ENCFF288KSL/@@download/ENCFF288KSL.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF057OSU bam alignments ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF490CEX, ENCFF807MUK 1349895361 ENCODE Processing Pipeline c75d61e88714331f1b0170a18bfdfb8d https://www.encodeproject.org/files/ENCFF057OSU/@@download/ENCFF057OSU.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF523PEG bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF038QTK, ENCFF807MUK 509582793 ENCODE Processing Pipeline b7423c1e10fc5765ef65e93afac27ab4 https://www.encodeproject.org/files/ENCFF523PEG/@@download/ENCFF523PEG.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF918WMQ bam alignments ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF141CZI, ENCFF807MUK 704480023 ENCODE Processing Pipeline 538397c8d25cae1f36bffc6fa983904f https://www.encodeproject.org/files/ENCFF918WMQ/@@download/ENCFF918WMQ.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF815ASL bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 100 ENCFF044ZEJ, ENCFF067SVP, ENCFF807MUK 2736449665 ENCODE Processing Pipeline 05076a4cd674edff54f2c6eab95a896a https://www.encodeproject.org/files/ENCFF815ASL/@@download/ENCFF815ASL.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF763TBX bam alignments ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 100 ENCFF498UGH, ENCFF623RJM, ENCFF807MUK 6164686432 ENCODE Processing Pipeline 62a5e1595f885d8d03a7662a03dd7aa2 https://www.encodeproject.org/files/ENCFF763TBX/@@download/ENCFF763TBX.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF072EMM bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 100 ENCFF276AYD, ENCFF519SRC, ENCFF807MUK 4325134973 ENCODE Processing Pipeline 054db2e0ea1c6493e8706a30abdd0d5d https://www.encodeproject.org/files/ENCFF072EMM/@@download/ENCFF072EMM.bam hg19 released borderline replicate concordance ENCFF581KEJ bam alignments ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 100 ENCFF504AIH, ENCFF590TAH, ENCFF807MUK 5000324879 ENCODE Processing Pipeline ac616ee379d3a5085ca0aa7a848b4851 https://www.encodeproject.org/files/ENCFF581KEJ/@@download/ENCFF581KEJ.bam hg19 released borderline replicate concordance ENCFF059JFA bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 76 ENCFF108YMB, ENCFF807MUK 1054591804 ENCODE Processing Pipeline b71f714eedf01ab29ffac0af37d9e8bd https://www.encodeproject.org/files/ENCFF059JFA/@@download/ENCFF059JFA.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF744CYD bam alignments ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 76 ENCFF152PIA, ENCFF807MUK 1442514722 ENCODE Processing Pipeline 8afdb738c2b5b0d7bca84c92fa491660 https://www.encodeproject.org/files/ENCFF744CYD/@@download/ENCFF744CYD.bam hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF675QNF bam alignments ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF015MWE, ENCFF405OKO, ENCFF807MUK 4219460773 ENCODE Processing Pipeline 21fec94626d5f1c62e05189a72d34cc4 https://www.encodeproject.org/files/ENCFF675QNF/@@download/ENCFF675QNF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF458MXN bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF076DJF, ENCFF578AVN, ENCFF807MUK 4303299973 ENCODE Processing Pipeline fdf42718d396a59e642b84b3d4c39a9c https://www.encodeproject.org/files/ENCFF458MXN/@@download/ENCFF458MXN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF584CLK bam alignments ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF079WWC, ENCFF104LKB, ENCFF807MUK 5274959951 ENCODE Processing Pipeline 897684cb6b6ce36dbc5ff0c4fe1fcaaf https://www.encodeproject.org/files/ENCFF584CLK/@@download/ENCFF584CLK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF117CKT bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 50 ENCFF751GLM, ENCFF801EQE, ENCFF807MUK 866627645 ENCODE Processing Pipeline a553c521f6df6842113fdd94f9535795 https://www.encodeproject.org/files/ENCFF117CKT/@@download/ENCFF117CKT.bam hg19 released low read depth, missing genetic modification characterization ENCFF916QKW bam alignments ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 50 ENCFF157QEO, ENCFF201XOJ, ENCFF807MUK 850188064 ENCODE Processing Pipeline dcdd793a9047dc70f124e185a5bceada https://www.encodeproject.org/files/ENCFF916QKW/@@download/ENCFF916QKW.bam hg19 released low read depth, missing genetic modification characterization ENCFF277QYK bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF246FAV, ENCFF807MUK 421515628 ENCODE Processing Pipeline 2d00a30af1bca9c52273b4610259bc13 https://www.encodeproject.org/files/ENCFF277QYK/@@download/ENCFF277QYK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF763SGF bam alignments ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF266IUJ, ENCFF807MUK 520264004 ENCODE Processing Pipeline 014216ca4309426a0d6448c5adbb224a https://www.encodeproject.org/files/ENCFF763SGF/@@download/ENCFF763SGF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF729SVH bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 50 ENCFF576YQE, ENCFF807MUK, ENCFF863YQQ 860310018 ENCODE Processing Pipeline ddcc463a24771860d8a493a68ff4350c https://www.encodeproject.org/files/ENCFF729SVH/@@download/ENCFF729SVH.bam hg19 released low read depth, missing genetic modification characterization ENCFF968XOX bam alignments ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 50 ENCFF458SBM, ENCFF807MUK, ENCFF922XIL 1639888456 ENCODE Processing Pipeline d7485c91458acf6e9b2fa55205ab1626 https://www.encodeproject.org/files/ENCFF968XOX/@@download/ENCFF968XOX.bam hg19 released low read depth, missing genetic modification characterization ENCFF484TNT bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF204UTF, ENCFF807MUK 1108078524 ENCODE Processing Pipeline 4398aeaea044b4c6f105de8d76edaec7 https://www.encodeproject.org/files/ENCFF484TNT/@@download/ENCFF484TNT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361EAX bam alignments ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF380ESC, ENCFF807MUK 1905614730 ENCODE Processing Pipeline 7394f3f50c62a57f98701ff75966d95b https://www.encodeproject.org/files/ENCFF361EAX/@@download/ENCFF361EAX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF643YHU bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 50 ENCFF617BUV, ENCFF807MUK 979293603 ENCODE Processing Pipeline 6fd0088fc1d797eee9b05da33704130d https://www.encodeproject.org/files/ENCFF643YHU/@@download/ENCFF643YHU.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF924APX bam alignments ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 50 ENCFF807MUK, ENCFF844LMK 954864000 ENCODE Processing Pipeline f1d91a60ca91d02f09fab505a67e1fc1 https://www.encodeproject.org/files/ENCFF924APX/@@download/ENCFF924APX.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF679HDV bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF112NVD, ENCFF405YUH, ENCFF807MUK 5600559970 ENCODE Processing Pipeline b6ef844d3e30a87fd1f858b03bf2bcfd https://www.encodeproject.org/files/ENCFF679HDV/@@download/ENCFF679HDV.bam hg19 released ENCFF545ZPB bam alignments ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF037UVY, ENCFF060EBL, ENCFF807MUK 6041309596 ENCODE Processing Pipeline ff7d8107dc55923271ce12e97be1b42e https://www.encodeproject.org/files/ENCFF545ZPB/@@download/ENCFF545ZPB.bam hg19 released ENCFF055QIN bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 100 ENCFF086HHP, ENCFF490CJS, ENCFF807MUK 3750892542 ENCODE Processing Pipeline 038a84286422c3694c71574cf149a1bb https://www.encodeproject.org/files/ENCFF055QIN/@@download/ENCFF055QIN.bam hg19 released borderline replicate concordance ENCFF332QUM bam alignments ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 100 ENCFF365NAQ, ENCFF668ZNC, ENCFF807MUK 3994488625 ENCODE Processing Pipeline a45de89ae965fe7e804fe7b618cb5ac1 https://www.encodeproject.org/files/ENCFF332QUM/@@download/ENCFF332QUM.bam hg19 released borderline replicate concordance ENCFF469DEJ bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF126MZP, ENCFF553GOC, ENCFF807MUK 3728138404 ENCODE Processing Pipeline fcc4848dd0fc90c7e9a0f113bca4b3d2 https://www.encodeproject.org/files/ENCFF469DEJ/@@download/ENCFF469DEJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF745TZN bam alignments ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF306GVI, ENCFF436CBC, ENCFF807MUK 5027181275 ENCODE Processing Pipeline 82072679efbbcb168ce196bc5168019f https://www.encodeproject.org/files/ENCFF745TZN/@@download/ENCFF745TZN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF503INV bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 100 ENCFF065YSO, ENCFF680HKS, ENCFF807MUK 5734287253 ENCODE Processing Pipeline 33f2dc9637d9686fe7a7883208f58a61 https://www.encodeproject.org/files/ENCFF503INV/@@download/ENCFF503INV.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF919XGC bam alignments ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 100 ENCFF521KBW, ENCFF718FBA, ENCFF807MUK 8300669941 ENCODE Processing Pipeline 3d66cc6c02e3f2034d890763cffae05b https://www.encodeproject.org/files/ENCFF919XGC/@@download/ENCFF919XGC.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF472GHA bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF622NJV, ENCFF807MUK, ENCFF836FDG 2300100963 ENCODE Processing Pipeline 4372c559e308e771f9cefcc3e332bd16 https://www.encodeproject.org/files/ENCFF472GHA/@@download/ENCFF472GHA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF591PLS bam alignments ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF207YYY, ENCFF252LIU, ENCFF807MUK 2983724100 ENCODE Processing Pipeline f090ae215e6e41ad3452588cc465b3c6 https://www.encodeproject.org/files/ENCFF591PLS/@@download/ENCFF591PLS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF287FTU bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF024PSP, ENCFF807MUK 1705175450 ENCODE Processing Pipeline b9a0e5d9358d1144b81343a20f87f64c https://www.encodeproject.org/files/ENCFF287FTU/@@download/ENCFF287FTU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF384GVG bam alignments ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF128NBF, ENCFF807MUK 1663206860 ENCODE Processing Pipeline 1867cb6f6c67e248b1c545562586795e https://www.encodeproject.org/files/ENCFF384GVG/@@download/ENCFF384GVG.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF234PKC bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 100 ENCFF007IDQ, ENCFF807MUK, ENCFF908PTR 4257403127 ENCODE Processing Pipeline 68278ca4565ff0cd63eb1a50304ff51c https://www.encodeproject.org/files/ENCFF234PKC/@@download/ENCFF234PKC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF676IGA bam alignments ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 100 ENCFF188LAZ, ENCFF395XDN, ENCFF807MUK 3267407979 ENCODE Processing Pipeline 02e14b03ccc5fa0fb50b80d9d1efd8fa https://www.encodeproject.org/files/ENCFF676IGA/@@download/ENCFF676IGA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF406KFP bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 100 ENCFF362ZRF, ENCFF807MUK, ENCFF896IZU 3650813528 ENCODE Processing Pipeline 75b38415cf457fdc256bc482a1a20320 https://www.encodeproject.org/files/ENCFF406KFP/@@download/ENCFF406KFP.bam hg19 released mild to moderate bottlenecking ENCFF686HTQ bam alignments ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 100 ENCFF741IHV, ENCFF807MUK, ENCFF990UUV 3856474863 ENCODE Processing Pipeline d3245fce83609e50866db5fb1dcdd367 https://www.encodeproject.org/files/ENCFF686HTQ/@@download/ENCFF686HTQ.bam hg19 released mild to moderate bottlenecking ENCFF965EEE bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF562IQT, ENCFF577YSB, ENCFF807MUK 6142412521 ENCODE Processing Pipeline c6e158b85691cb91d62f7851adf77512 https://www.encodeproject.org/files/ENCFF965EEE/@@download/ENCFF965EEE.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF740KJR bam alignments ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF447OXS, ENCFF590KVS, ENCFF807MUK 6478214419 ENCODE Processing Pipeline 55470cf8787d29776843d950a8de02fa https://www.encodeproject.org/files/ENCFF740KJR/@@download/ENCFF740KJR.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF113NRO bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF510RGT, ENCFF807MUK 1796487817 ENCODE Processing Pipeline ffb764c332572eb9b35217495e037802 https://www.encodeproject.org/files/ENCFF113NRO/@@download/ENCFF113NRO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF991VFZ bam alignments ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF713JRT, ENCFF807MUK 1705756077 ENCODE Processing Pipeline 5e9ebf01ec017cdd707b258829c6d443 https://www.encodeproject.org/files/ENCFF991VFZ/@@download/ENCFF991VFZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF266WEU bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF079HKK, ENCFF807MUK 1094047767 ENCODE Processing Pipeline fe9e4e03de9dd3359a7617176e6b2499 https://www.encodeproject.org/files/ENCFF266WEU/@@download/ENCFF266WEU.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF462CGH bam alignments ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF104LBO, ENCFF807MUK 1327560380 ENCODE Processing Pipeline 67f6cc38b26fe696b5567676f02dbba0 https://www.encodeproject.org/files/ENCFF462CGH/@@download/ENCFF462CGH.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF239UPK bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF174QLC, ENCFF807MUK 1201974759 ENCODE Processing Pipeline 004defd28e7def5f545e85845a098377 https://www.encodeproject.org/files/ENCFF239UPK/@@download/ENCFF239UPK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF953XVS bam alignments ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF256YDZ, ENCFF807MUK 1953334743 ENCODE Processing Pipeline 9923b41f81bf28a2a869eb2b5c669148 https://www.encodeproject.org/files/ENCFF953XVS/@@download/ENCFF953XVS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF446KCO bam alignments ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF196SPG, ENCFF506HHD, ENCFF807MUK 3355797828 ENCODE Processing Pipeline d5e913cfe1bd7f2bf3ee43b18ac97c61 https://www.encodeproject.org/files/ENCFF446KCO/@@download/ENCFF446KCO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF100EAO bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 100 ENCFF233LBL, ENCFF724EXA, ENCFF807MUK 3952010045 ENCODE Processing Pipeline 2c85007c19923cf09195be9c0f4e822d https://www.encodeproject.org/files/ENCFF100EAO/@@download/ENCFF100EAO.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF965CLW bam alignments ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 100 ENCFF371HTE, ENCFF563WER, ENCFF807MUK 4199304381 ENCODE Processing Pipeline 1e86e9ab5927d084ee3438d8f412f0d8 https://www.encodeproject.org/files/ENCFF965CLW/@@download/ENCFF965CLW.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF648AFL bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF994KPK 539999169 ENCODE Processing Pipeline 9fc2aa84c1cff25d2d47ffd21a223fa3 https://www.encodeproject.org/files/ENCFF648AFL/@@download/ENCFF648AFL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF431XVO bam alignments ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF836CBD 470352558 ENCODE Processing Pipeline dbf52045fe1f074f73d9f1580ee04bae https://www.encodeproject.org/files/ENCFF431XVO/@@download/ENCFF431XVO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF670MUB bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF461VNE, ENCFF807MUK 1770531430 ENCODE Processing Pipeline e597e1e0439f95c72ca235d124f41efb https://www.encodeproject.org/files/ENCFF670MUB/@@download/ENCFF670MUB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF925MJO bam alignments ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF495VRD, ENCFF807MUK 1860643328 ENCODE Processing Pipeline 350f4b0b0fe6f1f21c2bcaa7c1144dbf https://www.encodeproject.org/files/ENCFF925MJO/@@download/ENCFF925MJO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF795LWN bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF795MVM, ENCFF807MUK 1152927843 ENCODE Processing Pipeline b1545d224aca23487d890bce3b771c57 https://www.encodeproject.org/files/ENCFF795LWN/@@download/ENCFF795LWN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF737RIN bam alignments ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF351KCG, ENCFF807MUK 1338497346 ENCODE Processing Pipeline f17f6d20abe2ea2d431e965b9bc3fc8c https://www.encodeproject.org/files/ENCFF737RIN/@@download/ENCFF737RIN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF173YSU bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF738EEY, ENCFF807MUK 871090391 ENCODE Processing Pipeline 5d35b7f0f65cc290d4de3bb1e6f9d4b0 https://www.encodeproject.org/files/ENCFF173YSU/@@download/ENCFF173YSU.bam hg19 released low read length, low read depth ENCFF084EMC bam alignments ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF235VMD, ENCFF807MUK 784990205 ENCODE Processing Pipeline 5759b2a25d5349236b1ea6eac08cf1f5 https://www.encodeproject.org/files/ENCFF084EMC/@@download/ENCFF084EMC.bam hg19 released low read length, low read depth ENCFF176IME bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF430LJV, ENCFF807MUK 1479485528 ENCODE Processing Pipeline 70a3e7f1beaf310e580ab1a81c20e9ab https://www.encodeproject.org/files/ENCFF176IME/@@download/ENCFF176IME.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF944MOK bam alignments ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF608JCC, ENCFF807MUK 2025574410 ENCODE Processing Pipeline 1e2f3c882ced21b2ccb814454206da7c https://www.encodeproject.org/files/ENCFF944MOK/@@download/ENCFF944MOK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF820SNZ bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF001RUL, ENCFF807MUK 1313528763 ENCODE Processing Pipeline 2366d44c8ad24b78b9a850b4428fd12a https://www.encodeproject.org/files/ENCFF820SNZ/@@download/ENCFF820SNZ.bam hg19 released antibody characterized with exemption ENCFF641CKM bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF001RUM, ENCFF807MUK 1401989953 ENCODE Processing Pipeline c943b52a7295a776d066dda48a57effc https://www.encodeproject.org/files/ENCFF641CKM/@@download/ENCFF641CKM.bam hg19 released antibody characterized with exemption ENCFF701AOA bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUM, ENCFF807MUK 1401989981 ENCODE Processing Pipeline 886396e42d2767db9bd6c9e97183179e https://www.encodeproject.org/files/ENCFF701AOA/@@download/ENCFF701AOA.bam hg19 released antibody characterized with exemption ENCFF310TZE bam alignments ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUL, ENCFF807MUK 1313528791 ENCODE Processing Pipeline 0a2369d3a599e39d68ebd1a687712382 https://www.encodeproject.org/files/ENCFF310TZE/@@download/ENCFF310TZE.bam hg19 released antibody characterized with exemption ENCFF287QCE bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 50 ENCFF807MUK, ENCFF937RXL 836630533 ENCODE Processing Pipeline f71fb6fdf0281b90bb0f580a487096e8 https://www.encodeproject.org/files/ENCFF287QCE/@@download/ENCFF287QCE.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF040OBI bam alignments ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 50 ENCFF604LVZ, ENCFF807MUK 1167525971 ENCODE Processing Pipeline f1b7fa566414a134cc9bac1960815977 https://www.encodeproject.org/files/ENCFF040OBI/@@download/ENCFF040OBI.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF247BJO bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YZH, ENCFF807MUK 413767054 ENCODE Processing Pipeline 03cb1ee4fef50eed650cbbf99c2d9113 https://www.encodeproject.org/files/ENCFF247BJO/@@download/ENCFF247BJO.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF210CIB bam alignments ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YZJ, ENCFF807MUK 272527320 ENCODE Processing Pipeline 24073cac02e29038e8dab61ca30a5c1c https://www.encodeproject.org/files/ENCFF210CIB/@@download/ENCFF210CIB.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF349GIB bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 100 ENCFF645HBN, ENCFF807MUK, ENCFF890KLF 2835939759 ENCODE Processing Pipeline 8660a1f54ccbcf82edb1f72bab31db57 https://www.encodeproject.org/files/ENCFF349GIB/@@download/ENCFF349GIB.bam hg19 released low read depth ENCFF045NGS bam alignments ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 100 ENCFF711HKZ, ENCFF715IBV, ENCFF807MUK 3609436137 ENCODE Processing Pipeline 0958e21bb8a25ecddda79ea3d26b5d0e https://www.encodeproject.org/files/ENCFF045NGS/@@download/ENCFF045NGS.bam hg19 released low read depth ENCFF239NUC bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF911VFY 1200253465 ENCODE Processing Pipeline 48fae87ce0047fb260cec973f4a06cab https://www.encodeproject.org/files/ENCFF239NUC/@@download/ENCFF239NUC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF581SJH bam alignments ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF325WEY, ENCFF807MUK 1376251380 ENCODE Processing Pipeline 11aa85d605420010efe83263a7c86924 https://www.encodeproject.org/files/ENCFF581SJH/@@download/ENCFF581SJH.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF293YFD bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 74 ENCFF807MUK, ENCFF961BDT 1720080674 ENCODE Processing Pipeline 37ca9c35e32c55205c076781b134c11e https://www.encodeproject.org/files/ENCFF293YFD/@@download/ENCFF293YFD.bam hg19 released antibody characterized with exemption NTR biosample ENCFF274XMR bam alignments ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 76 ENCFF009BTS, ENCFF281BEW, ENCFF807MUK, ENCFF831CJZ 3426483393 ENCODE Processing Pipeline 107588ae16fc5cc85f1d851adb39f9d6 https://www.encodeproject.org/files/ENCFF274XMR/@@download/ENCFF274XMR.bam hg19 released antibody characterized with exemption NTR biosample ENCFF648GJU bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 100 ENCFF601NIY, ENCFF807MUK, ENCFF888GKN 3930067776 ENCODE Processing Pipeline 6c1094596720a5f0b35f8975c3e34fa8 https://www.encodeproject.org/files/ENCFF648GJU/@@download/ENCFF648GJU.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF342NSJ bam alignments ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 100 ENCFF064VKS, ENCFF263XLB, ENCFF807MUK 4819303846 ENCODE Processing Pipeline 67cf408f765cfc1f6f8319dc11f21018 https://www.encodeproject.org/files/ENCFF342NSJ/@@download/ENCFF342NSJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF780ISS bam alignments ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF944XPT, ENCFF957KBX 2145749315 ENCODE Processing Pipeline b2e8d0eb73a38feba4e1db93eb882405 https://www.encodeproject.org/files/ENCFF780ISS/@@download/ENCFF780ISS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF328BAK bam alignments ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF581BMZ, ENCFF807MUK, ENCFF992GOW 2519691176 ENCODE Processing Pipeline 3210f8d47ba69ce4d07f2d453b18946b https://www.encodeproject.org/files/ENCFF328BAK/@@download/ENCFF328BAK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF618PNT bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF037HQZ, ENCFF720YIW, ENCFF807MUK 3238217481 ENCODE Processing Pipeline 06f635d7e9be5f54c640183e68884145 https://www.encodeproject.org/files/ENCFF618PNT/@@download/ENCFF618PNT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF079WOP bam alignments ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF278ZXI, ENCFF280IXK, ENCFF807MUK 3480616305 ENCODE Processing Pipeline ed9310f3c517025c571c7d49e0b206dd https://www.encodeproject.org/files/ENCFF079WOP/@@download/ENCFF079WOP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF798LQE bam alignments ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF360PQN, ENCFF480FWI, ENCFF807MUK 817755160 ENCODE Processing Pipeline f72096139b30f160a44d8c5373e0a977 https://www.encodeproject.org/files/ENCFF798LQE/@@download/ENCFF798LQE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF464SZU bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 3 100 ENCFF138KRI, ENCFF411JNO, ENCFF807MUK 4679520197 ENCODE Processing Pipeline 9378e5423e4fd923be35d69cd1ba7423 https://www.encodeproject.org/files/ENCFF464SZU/@@download/ENCFF464SZU.bam hg19 released mild to moderate bottlenecking ENCFF010OCL bam alignments ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 100 ENCFF310DAJ, ENCFF493LNW, ENCFF807MUK 5634850788 ENCODE Processing Pipeline 49406b43b63b5535e194b52450912ec4 https://www.encodeproject.org/files/ENCFF010OCL/@@download/ENCFF010OCL.bam hg19 released mild to moderate bottlenecking ENCFF727JMT bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF703VJZ, ENCFF807MUK 1309970801 ENCODE Processing Pipeline 826d2393f709066ce2e43444052db5b4 https://www.encodeproject.org/files/ENCFF727JMT/@@download/ENCFF727JMT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF414LDK bam alignments ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF974TAR 1431942198 ENCODE Processing Pipeline 2e063e2719a44469d50e75f09c777e7e https://www.encodeproject.org/files/ENCFF414LDK/@@download/ENCFF414LDK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF172BTO bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGD, ENCFF807MUK 547811885 ENCODE Processing Pipeline 9eddd43db461209cd810a2c252c00378 https://www.encodeproject.org/files/ENCFF172BTO/@@download/ENCFF172BTO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF417TCH bam alignments ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGE, ENCFF807MUK 553380359 ENCODE Processing Pipeline 8c4e535a29272c9bc5742e56f5dab91f https://www.encodeproject.org/files/ENCFF417TCH/@@download/ENCFF417TCH.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF133REZ bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF763NHP, ENCFF807MUK 1205950595 ENCODE Processing Pipeline c96e4bc3b97202dac1000b5e7b049ec3 https://www.encodeproject.org/files/ENCFF133REZ/@@download/ENCFF133REZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF166DDT bam alignments ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF040QAY, ENCFF807MUK 1321791220 ENCODE Processing Pipeline f80321d7dc7792df64a3d08db054d6d7 https://www.encodeproject.org/files/ENCFF166DDT/@@download/ENCFF166DDT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF291ZML bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 76 ENCFF807MUK, ENCFF900MMA 1622664338 ENCODE Processing Pipeline 1591b6fb6c36d6c60b079b4174bd6bf0 https://www.encodeproject.org/files/ENCFF291ZML/@@download/ENCFF291ZML.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF651LLF bam alignments ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 76 ENCFF531SNZ, ENCFF807MUK 1312495159 ENCODE Processing Pipeline 0b11b74ff1697fac3f631abb43170c5a https://www.encodeproject.org/files/ENCFF651LLF/@@download/ENCFF651LLF.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF273NSF bam alignments ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF019HPW, ENCFF176BWH, ENCFF807MUK 2985548374 ENCODE Processing Pipeline 7c111b29748565a7e2b7241c3ee4a12c https://www.encodeproject.org/files/ENCFF273NSF/@@download/ENCFF273NSF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XUV bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF000XUX 365992814 Michael Snyder, Stanford 2c7ea251ab65d724cf70e1c740346efb https://www.encodeproject.org/files/ENCFF000XUV/@@download/ENCFF000XUV.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XUY bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF000XVA 537088678 Michael Snyder, Stanford 54b6d4a3f6d8269e7cc80ea3b0a930af https://www.encodeproject.org/files/ENCFF000XUY/@@download/ENCFF000XUY.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XVF bam alignments ENCSR000EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 3 ENCFF000XVC 493782131 Michael Snyder, Stanford 67e6cbfa20fd0983da6037fd8d24d4a0 https://www.encodeproject.org/files/ENCFF000XVF/@@download/ENCFF000XVF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF025JEN bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXC, ENCFF807MUK 448374896 ENCODE Processing Pipeline e5651e06c4dec1e9898dd8554e7007e2 https://www.encodeproject.org/files/ENCFF025JEN/@@download/ENCFF025JEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF028CUJ bam alignments ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXA, ENCFF807MUK 723896147 ENCODE Processing Pipeline 62683d712fc45b064d5dabda0101c4df https://www.encodeproject.org/files/ENCFF028CUJ/@@download/ENCFF028CUJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF601DDB bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 32 ENCFF000RAL, ENCFF807MUK 508229958 ENCODE Processing Pipeline ab286c9960730e47690d2058088a2e57 https://www.encodeproject.org/files/ENCFF601DDB/@@download/ENCFF601DDB.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF950YAN bam alignments ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 32 ENCFF000RAO, ENCFF807MUK 621556925 ENCODE Processing Pipeline 3b42e919890f8461add3c1720247a482 https://www.encodeproject.org/files/ENCFF950YAN/@@download/ENCFF950YAN.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000WPO bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WQC 500095747 Michael Snyder, Stanford 7ef12234c56b82a5f6586eb7ee1369dc https://www.encodeproject.org/files/ENCFF000WPO/@@download/ENCFF000WPO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPP bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WQB 246251444 Michael Snyder, Stanford 6327997131aa9541a92747728b9d9c7a https://www.encodeproject.org/files/ENCFF000WPP/@@download/ENCFF000WPP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPS bam alignments ENCSR000EBM ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WQD 998335582 Michael Snyder, Stanford fe4b23e6b4d23b2512f768fe8ac2dc1f https://www.encodeproject.org/files/ENCFF000WPS/@@download/ENCFF000WPS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF976AUQ bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF175BPL, ENCFF517STJ, ENCFF807MUK 5790748370 ENCODE Processing Pipeline dff5e4b18738aa5d6429baf430308ed9 https://www.encodeproject.org/files/ENCFF976AUQ/@@download/ENCFF976AUQ.bam hg19 released ENCFF722BQX bam alignments ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF281DBS, ENCFF509BWO, ENCFF807MUK 5078343239 ENCODE Processing Pipeline d6c55a1786b9733df62902318a9d5a2e https://www.encodeproject.org/files/ENCFF722BQX/@@download/ENCFF722BQX.bam hg19 released ENCFF914YJM bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 100 ENCFF410XYU, ENCFF509XFH, ENCFF807MUK 3003262429 ENCODE Processing Pipeline 80f26fa3c0a2025eeb9b7345d8673b78 https://www.encodeproject.org/files/ENCFF914YJM/@@download/ENCFF914YJM.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF987UCV bam alignments ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 100 ENCFF110RBD, ENCFF294ZQW, ENCFF807MUK 2964389146 ENCODE Processing Pipeline a57039b59b37af2b0430bf13bc00252e https://www.encodeproject.org/files/ENCFF987UCV/@@download/ENCFF987UCV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF096CSL bam alignments ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF181HOT, ENCFF571EFT, ENCFF807MUK 3640244715 ENCODE Processing Pipeline 9c5d3e0cd70cccc183977a3a8877327e https://www.encodeproject.org/files/ENCFF096CSL/@@download/ENCFF096CSL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF987QGM bam alignments ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF592ZFR, ENCFF624PFM, ENCFF807MUK 2870628477 ENCODE Processing Pipeline 8245bb3f0f744738eedaf1211de1e048 https://www.encodeproject.org/files/ENCFF987QGM/@@download/ENCFF987QGM.bam hg19 released antibody characterized with exemption ENCFF558RVJ bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NSW, ENCFF807MUK 656607627 ENCODE Processing Pipeline 78aed600470dfaaf2da03c5bd17ff916 https://www.encodeproject.org/files/ENCFF558RVJ/@@download/ENCFF558RVJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF850VBC bam alignments ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NSX, ENCFF807MUK 683256234 ENCODE Processing Pipeline 2130a5993e4305023eab6958de843e31 https://www.encodeproject.org/files/ENCFF850VBC/@@download/ENCFF850VBC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF556ZML bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF130AIS, ENCFF224VKL, ENCFF643KQW, ENCFF807MUK, ENCFF976CAW 6551754271 ENCODE Processing Pipeline b22a68201852f6d69b2c8bcd8fe365b3 https://www.encodeproject.org/files/ENCFF556ZML/@@download/ENCFF556ZML.bam hg19 released mild to moderate bottlenecking ENCFF401UTY bam alignments ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF071LWT, ENCFF232YUA, ENCFF807MUK, ENCFF813EGO, ENCFF882VBQ 7426890199 ENCODE Processing Pipeline 12020cf13b6f2668680f35f08e695af0 https://www.encodeproject.org/files/ENCFF401UTY/@@download/ENCFF401UTY.bam hg19 released mild to moderate bottlenecking ENCFF026NGK bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRJ, ENCFF807MUK 721524934 ENCODE Processing Pipeline 78f47e66157e9f17034feadd6af501bc https://www.encodeproject.org/files/ENCFF026NGK/@@download/ENCFF026NGK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF792CXJ bam alignments ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRH, ENCFF807MUK 684188866 ENCODE Processing Pipeline 776acd1741dc050d7153457826999814 https://www.encodeproject.org/files/ENCFF792CXJ/@@download/ENCFF792CXJ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF257YRW bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QWY, ENCFF807MUK 136915757 ENCODE Processing Pipeline 9927e17002c837d5f80cd4cd5c96bb4b https://www.encodeproject.org/files/ENCFF257YRW/@@download/ENCFF257YRW.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF161AYB bam alignments ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QWW, ENCFF807MUK 285953767 ENCODE Processing Pipeline 7b4ddf111ce203d89788d1cbec2c4528 https://www.encodeproject.org/files/ENCFF161AYB/@@download/ENCFF161AYB.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF239CRJ bam alignments ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF037XQS, ENCFF761XFH, ENCFF807MUK 2606518344 ENCODE Processing Pipeline bdf46e3e423f5b9ad7dd3e55efc31b4a https://www.encodeproject.org/files/ENCFF239CRJ/@@download/ENCFF239CRJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF184LBH bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRS, ENCFF807MUK 796005861 ENCODE Processing Pipeline bf98ebe95f5982bdb5d3bbee57610af2 https://www.encodeproject.org/files/ENCFF184LBH/@@download/ENCFF184LBH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF390NEA bam alignments ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRQ, ENCFF807MUK 957126298 ENCODE Processing Pipeline 787322b0d3f107476b2f9a1c08fdd6ea https://www.encodeproject.org/files/ENCFF390NEA/@@download/ENCFF390NEA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF381LRH bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF445ODF, ENCFF799CJA, ENCFF807MUK 5257445536 ENCODE Processing Pipeline 268f3450731c5fc3a534d12d7d0f240e https://www.encodeproject.org/files/ENCFF381LRH/@@download/ENCFF381LRH.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF092RQT bam alignments ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF700HWC, ENCFF807MUK, ENCFF957SQJ 5189924704 ENCODE Processing Pipeline 98255c44c05994d61375515c15b3cf34 https://www.encodeproject.org/files/ENCFF092RQT/@@download/ENCFF092RQT.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF457XBH bam alignments ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF408TVU, ENCFF807MUK, ENCFF834WKY 5530209001 ENCODE Processing Pipeline d83d48e6df41c9b22734f1600a980ace https://www.encodeproject.org/files/ENCFF457XBH/@@download/ENCFF457XBH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF784FIO bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF724KPM, ENCFF807MUK, ENCFF863GNT 4350279725 ENCODE Processing Pipeline 1cd169e25c4bb9eadc235cc5315e89b8 https://www.encodeproject.org/files/ENCFF784FIO/@@download/ENCFF784FIO.bam hg19 released ENCFF282JRK bam alignments ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF485UKV, ENCFF807MUK, ENCFF881QTR 5495085832 ENCODE Processing Pipeline 872d6a355a1d5f314dd2d91ce7780448 https://www.encodeproject.org/files/ENCFF282JRK/@@download/ENCFF282JRK.bam hg19 released ENCFF020FAT bam alignments ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF355QDR, ENCFF532FBK, ENCFF807MUK 3821928126 ENCODE Processing Pipeline 4d960d851644471ea36efb7e091b8bac https://www.encodeproject.org/files/ENCFF020FAT/@@download/ENCFF020FAT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF931BEZ bam alignments ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF170LID, ENCFF308YUI, ENCFF807MUK 2653921102 ENCODE Processing Pipeline 86723a89f6676501d59b9b3d15bf9a14 https://www.encodeproject.org/files/ENCFF931BEZ/@@download/ENCFF931BEZ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF943DGZ bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF244ELK, ENCFF807MUK, ENCFF906WRW 5444192608 ENCODE Processing Pipeline 11174973f0524420369f50249e7be8b9 https://www.encodeproject.org/files/ENCFF943DGZ/@@download/ENCFF943DGZ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF084PMJ bam alignments ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF285SFC, ENCFF530PUU, ENCFF807MUK 5433947526 ENCODE Processing Pipeline 6bc7617d999968751f446ed25f2cdc4d https://www.encodeproject.org/files/ENCFF084PMJ/@@download/ENCFF084PMJ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF043BND bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF059KSX, ENCFF807MUK, ENCFF990KCY 4823865157 ENCODE Processing Pipeline 5b45c5dd245724e571d7cec1199a273a https://www.encodeproject.org/files/ENCFF043BND/@@download/ENCFF043BND.bam hg19 released missing genetic modification characterization missing control alignments ENCFF018KVH bam alignments ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF052UFC, ENCFF278QRX, ENCFF807MUK 4627292418 ENCODE Processing Pipeline 3199c235fa6691648b43e670ee602bd2 https://www.encodeproject.org/files/ENCFF018KVH/@@download/ENCFF018KVH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF100LIK bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 100 ENCFF271IUJ, ENCFF452DGQ, ENCFF807MUK 3998707587 ENCODE Processing Pipeline 20128d57c801ef21b630afb9a1a4f8c1 https://www.encodeproject.org/files/ENCFF100LIK/@@download/ENCFF100LIK.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF577XDA bam alignments ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 100 ENCFF253VDT, ENCFF807MUK, ENCFF814CFQ 4409684313 ENCODE Processing Pipeline d756aebefbdab2a2aaba7823dcfffaed https://www.encodeproject.org/files/ENCFF577XDA/@@download/ENCFF577XDA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF735WJM bam alignments ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF228VLO, ENCFF554MGZ, ENCFF807MUK 3250141801 ENCODE Processing Pipeline 673a63e39a0322470bae47cd8bba3494 https://www.encodeproject.org/files/ENCFF735WJM/@@download/ENCFF735WJM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF424AYM bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF607RXB, ENCFF633AET, ENCFF807MUK 5350737101 ENCODE Processing Pipeline f96ef5a8100db27e9272d80d4ec518cb https://www.encodeproject.org/files/ENCFF424AYM/@@download/ENCFF424AYM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF130RDX bam alignments ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF111REI, ENCFF554XIX, ENCFF807MUK 6447954457 ENCODE Processing Pipeline 04aa903121410751c8008c100899d810 https://www.encodeproject.org/files/ENCFF130RDX/@@download/ENCFF130RDX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF475VPO bam alignments ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF807MUK, ENCFF890YAG, ENCFF901EEE 3229689617 ENCODE Processing Pipeline 81e98b5b6b5b0bcd28b8ba8a704a8f49 https://www.encodeproject.org/files/ENCFF475VPO/@@download/ENCFF475VPO.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF036PVG bam alignments ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF097CTQ, ENCFF321GWR, ENCFF807MUK 5074812429 ENCODE Processing Pipeline 236325343e2af05275f674d70e2ebdac https://www.encodeproject.org/files/ENCFF036PVG/@@download/ENCFF036PVG.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF354WTX bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 3 100 ENCFF487XNJ, ENCFF780PZZ, ENCFF807MUK 4923995344 ENCODE Processing Pipeline 2e9c558eedaac725eded0a5248fcbdf0 https://www.encodeproject.org/files/ENCFF354WTX/@@download/ENCFF354WTX.bam hg19 released ENCFF981SIA bam alignments ENCSR145BHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFRKB-human DNA False 2017-06-29 ENCODE 4 100 ENCFF244KAZ, ENCFF318DFZ, ENCFF807MUK 5835469846 ENCODE Processing Pipeline ef5056288c202c4d1ef48a28c9aea4cb https://www.encodeproject.org/files/ENCFF981SIA/@@download/ENCFF981SIA.bam hg19 released ENCFF259CUG bam alignments ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF513RVZ, ENCFF807MUK, ENCFF920QMA 6038242090 ENCODE Processing Pipeline 81a7daeab3300a38975ede0c78d6ee40 https://www.encodeproject.org/files/ENCFF259CUG/@@download/ENCFF259CUG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF251UXN bam alignments ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF223CAR, ENCFF680WFP, ENCFF807MUK 2880522831 ENCODE Processing Pipeline 98b3adb1d45a297dde40fc24b19137f0 https://www.encodeproject.org/files/ENCFF251UXN/@@download/ENCFF251UXN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF571MOX bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 76 ENCFF128OQA, ENCFF807MUK 1254520134 ENCODE Processing Pipeline 50684e1267aec5ad00e77d326b9aa271 https://www.encodeproject.org/files/ENCFF571MOX/@@download/ENCFF571MOX.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362WTD bam alignments ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 76 ENCFF259MWS, ENCFF807MUK 2019266720 ENCODE Processing Pipeline 9d94a142d666f4016a857124ddab09c0 https://www.encodeproject.org/files/ENCFF362WTD/@@download/ENCFF362WTD.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF154LYO bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHA, ENCFF807MUK 1235590110 ENCODE Processing Pipeline 25b54dbfaa0866ba87262e2a2fcc8b06 https://www.encodeproject.org/files/ENCFF154LYO/@@download/ENCFF154LYO.bam hg19 released low read length biological replicates with identical biosample ENCFF981DLK bam alignments ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NGY, ENCFF807MUK 1240248190 ENCODE Processing Pipeline bed5a02021da09334b93b7845197bca8 https://www.encodeproject.org/files/ENCFF981DLK/@@download/ENCFF981DLK.bam hg19 released low read length biological replicates with identical biosample ENCFF764ABD bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF485RLD, ENCFF780IGT, ENCFF807MUK 4225673524 ENCODE Processing Pipeline e6b94980f1d46ff6a2c3a73127802751 https://www.encodeproject.org/files/ENCFF764ABD/@@download/ENCFF764ABD.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF014SDL bam alignments ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF109KFS, ENCFF364NNY, ENCFF807MUK 4873438150 ENCODE Processing Pipeline f7402370c6616dc5699c563adb703f67 https://www.encodeproject.org/files/ENCFF014SDL/@@download/ENCFF014SDL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF904OQO bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF410PMB, ENCFF807MUK, ENCFF830DDU 4099943834 ENCODE Processing Pipeline 45bc441a580c5de53e2fd12d40639f25 https://www.encodeproject.org/files/ENCFF904OQO/@@download/ENCFF904OQO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF698TEA bam alignments ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF024CHD, ENCFF807MUK, ENCFF857UFP 5067568669 ENCODE Processing Pipeline dae3c4beda161af50c8f9fa121bf7d09 https://www.encodeproject.org/files/ENCFF698TEA/@@download/ENCFF698TEA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF739MET bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 76 ENCFF082XMQ, ENCFF807MUK 1393941537 ENCODE Processing Pipeline bd8e7a5d4123fc0ac9bb08a744a592ca https://www.encodeproject.org/files/ENCFF739MET/@@download/ENCFF739MET.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF646JVE bam alignments ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 76 ENCFF771RGQ, ENCFF807MUK 1659104091 ENCODE Processing Pipeline 42a5bde9c3a4866a69652fceef8aee04 https://www.encodeproject.org/files/ENCFF646JVE/@@download/ENCFF646JVE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF937OAI bam alignments ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF706YJI, ENCFF807MUK, ENCFF882UZC 4544269958 ENCODE Processing Pipeline 9197ada87ed44b6c10786a5381a380b9 https://www.encodeproject.org/files/ENCFF937OAI/@@download/ENCFF937OAI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF000BWB bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000BWM 617227989 Bradley Bernstein, Broad cb5a5fc42a0d976476272e7062e6ba19 https://www.encodeproject.org/files/ENCFF000BWB/@@download/ENCFF000BWB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF000BWC bam alignments ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF000BWR 454281342 Bradley Bernstein, Broad d611d261ac269a700cc6fc069af1ad6d https://www.encodeproject.org/files/ENCFF000BWC/@@download/ENCFF000BWC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient read depth ENCFF604MCE bam alignments ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF257PAW, ENCFF656FMR, ENCFF807MUK 2778678037 ENCODE Processing Pipeline 9336207d91bca099db1d1b25cde0bfb5 https://www.encodeproject.org/files/ENCFF604MCE/@@download/ENCFF604MCE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF562TOQ bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 76 ENCFF236MSV, ENCFF807MUK 911394392 ENCODE Processing Pipeline b33835fa6ba0e265923e2d0def01bdf6 https://www.encodeproject.org/files/ENCFF562TOQ/@@download/ENCFF562TOQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF485RWA bam alignments ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 75 ENCFF439JPL, ENCFF807MUK 1749341535 ENCODE Processing Pipeline 21ff0fdb085ee5eac03ee7cc19e8dd79 https://www.encodeproject.org/files/ENCFF485RWA/@@download/ENCFF485RWA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF696DSP bam alignments ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF277TIE, ENCFF779XEB, ENCFF807MUK 4525330779 ENCODE Processing Pipeline 6c344d73797aadb0e46af657f9ac118c https://www.encodeproject.org/files/ENCFF696DSP/@@download/ENCFF696DSP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF253MVW bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHA, ENCFF002EHG, ENCFF807MUK 5264533735 ENCODE Processing Pipeline 385be90c87b733a20da1c008b324c365 https://www.encodeproject.org/files/ENCFF253MVW/@@download/ENCFF253MVW.bam hg19 released antibody characterized with exemption ENCFF140ELP bam alignments ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DTW, ENCFF002DUG, ENCFF807MUK 6620392601 ENCODE Processing Pipeline 39bfb6a2a8f12fb1891ca9430b82a4e7 https://www.encodeproject.org/files/ENCFF140ELP/@@download/ENCFF140ELP.bam hg19 released antibody characterized with exemption ENCFF708YID bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF093KEW, ENCFF807MUK 1397626577 ENCODE Processing Pipeline 3b2805b9c95c5b80049fa54920f5f811 https://www.encodeproject.org/files/ENCFF708YID/@@download/ENCFF708YID.bam hg19 released missing control alignments ENCFF484DFP bam alignments ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF735IUI, ENCFF807MUK 1784486613 ENCODE Processing Pipeline 8c7a0ecdbdf4a99537d6d1e985ec3088 https://www.encodeproject.org/files/ENCFF484DFP/@@download/ENCFF484DFP.bam hg19 released missing control alignments ENCFF925ORI bam alignments ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF293WGN, ENCFF807MUK, ENCFF823QEH 2277542530 ENCODE Processing Pipeline 90bb2363e223ee576676dba37f37ef18 https://www.encodeproject.org/files/ENCFF925ORI/@@download/ENCFF925ORI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF428MEC bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF095OUI, ENCFF672NLI, ENCFF807MUK 5533896354 ENCODE Processing Pipeline 7cedf3ee026464f6cdf2b83698ad420f https://www.encodeproject.org/files/ENCFF428MEC/@@download/ENCFF428MEC.bam hg19 released ENCFF035ZYM bam alignments ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF807MUK, ENCFF814BAR, ENCFF992PSP 5527225299 ENCODE Processing Pipeline 5fa368fbc239627ab34372e4fe7e28c7 https://www.encodeproject.org/files/ENCFF035ZYM/@@download/ENCFF035ZYM.bam hg19 released ENCFF220ZJP bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF219XKY, ENCFF434TPG, ENCFF807MUK 5676973854 ENCODE Processing Pipeline 3c79552042f68f3a809430342c4355d9 https://www.encodeproject.org/files/ENCFF220ZJP/@@download/ENCFF220ZJP.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF502RYW bam alignments ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF095AFX, ENCFF173GSZ, ENCFF807MUK 7089323918 ENCODE Processing Pipeline 4be2787e7ca6053811bb9d7d8ed4c0bf https://www.encodeproject.org/files/ENCFF502RYW/@@download/ENCFF502RYW.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF121NJR bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EMJ, ENCFF002EML, ENCFF807MUK 4856506824 ENCODE Processing Pipeline a62b3bd9ecc8240e3dc8a012b8004031 https://www.encodeproject.org/files/ENCFF121NJR/@@download/ENCFF121NJR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF248LPB bam alignments ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMM, ENCFF002EMN, ENCFF807MUK 6621512562 ENCODE Processing Pipeline 57e7d54fdc6f986b0fe9583229eda718 https://www.encodeproject.org/files/ENCFF248LPB/@@download/ENCFF248LPB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF574FWU bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF404XXI, ENCFF580UJW, ENCFF807MUK 3818262164 ENCODE Processing Pipeline a7f6679594b7972e67be46023e3c9112 https://www.encodeproject.org/files/ENCFF574FWU/@@download/ENCFF574FWU.bam hg19 released borderline replicate concordance ENCFF957ELP bam alignments ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF645TLG, ENCFF791NQC, ENCFF807MUK 5065337852 ENCODE Processing Pipeline e709232dd06472f139cae087bf6f4657 https://www.encodeproject.org/files/ENCFF957ELP/@@download/ENCFF957ELP.bam hg19 released borderline replicate concordance ENCFF951VMN bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF428XVA, ENCFF807MUK 385052908 ENCODE Processing Pipeline 5d68646b50a9302069276a28d79fa994 https://www.encodeproject.org/files/ENCFF951VMN/@@download/ENCFF951VMN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF300QTI bam alignments ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF531AUS, ENCFF724HOV, ENCFF807MUK 461289338 ENCODE Processing Pipeline e91cb6cee1f946c93740d95c17468628 https://www.encodeproject.org/files/ENCFF300QTI/@@download/ENCFF300QTI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF302SCR bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF124RBK, ENCFF554IYL, ENCFF807MUK 5377094064 ENCODE Processing Pipeline a78170b89647dabeccb676ef519ff0bf https://www.encodeproject.org/files/ENCFF302SCR/@@download/ENCFF302SCR.bam hg19 released ENCFF865UXV bam alignments ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF042XDV, ENCFF324PPG, ENCFF807MUK 4858237967 ENCODE Processing Pipeline cb7156d5c83144989fb2d5ef232d4225 https://www.encodeproject.org/files/ENCFF865UXV/@@download/ENCFF865UXV.bam hg19 released ENCFF913EKV bam alignments ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF452KCG, ENCFF800QOR, ENCFF807MUK 4597791295 ENCODE Processing Pipeline 9ff7d23e89f30d471e43ce77791c0c4f https://www.encodeproject.org/files/ENCFF913EKV/@@download/ENCFF913EKV.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF534AFH bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF007QNS, ENCFF807MUK 587622682 ENCODE Processing Pipeline 335e343af5c9c7f9ff626ad3945a0aac https://www.encodeproject.org/files/ENCFF534AFH/@@download/ENCFF534AFH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF565WPL bam alignments ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF197EAD, ENCFF807MUK 783033349 ENCODE Processing Pipeline f47bcd262d8dcfe47aa1a5e0febda894 https://www.encodeproject.org/files/ENCFF565WPL/@@download/ENCFF565WPL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF959UDN bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF855KRX, ENCFF857WNF 8698365697 ENCODE Processing Pipeline 04281cc64dde76344433097c44cb6c17 https://www.encodeproject.org/files/ENCFF959UDN/@@download/ENCFF959UDN.bam hg19 released borderline replicate concordance NTR biosample ENCFF008PUA bam alignments ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF803FBH, ENCFF807MUK, ENCFF935CXJ 9791947320 ENCODE Processing Pipeline 8cdb0089e48af075b914e6c36b97c564 https://www.encodeproject.org/files/ENCFF008PUA/@@download/ENCFF008PUA.bam hg19 released borderline replicate concordance NTR biosample ENCFF922RIH bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF221INE, ENCFF807MUK 1297314369 ENCODE Processing Pipeline 64d83766f87b00570cfc302453b24229 https://www.encodeproject.org/files/ENCFF922RIH/@@download/ENCFF922RIH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF449GDV bam alignments ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF102EIG, ENCFF807MUK 1676243007 ENCODE Processing Pipeline ac19070432c17e56dd8d099874bd40ec https://www.encodeproject.org/files/ENCFF449GDV/@@download/ENCFF449GDV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF325QBB bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 100 ENCFF296LZL, ENCFF352YZE, ENCFF807MUK 4249795472 ENCODE Processing Pipeline f35812b0e20f5801b474cca51ac175c4 https://www.encodeproject.org/files/ENCFF325QBB/@@download/ENCFF325QBB.bam hg19 released borderline replicate concordance ENCFF419MUD bam alignments ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 100 ENCFF228FHJ, ENCFF707YZN, ENCFF807MUK 4572296490 ENCODE Processing Pipeline cf755362b81866372d84dfd233607a47 https://www.encodeproject.org/files/ENCFF419MUD/@@download/ENCFF419MUD.bam hg19 released borderline replicate concordance ENCFF087PBL bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF343MJV, ENCFF401WRN, ENCFF807MUK 608904003 ENCODE Processing Pipeline c65bdd6933cca435de5d09c0e6cd0941 https://www.encodeproject.org/files/ENCFF087PBL/@@download/ENCFF087PBL.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF169QDL bam alignments ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF304WBQ, ENCFF584XMP, ENCFF807MUK 1161010033 ENCODE Processing Pipeline 0a590f5363f871aea0deed63407a14c6 https://www.encodeproject.org/files/ENCFF169QDL/@@download/ENCFF169QDL.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF118IIC bam alignments ENCSR791AYW ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF032PDB, ENCFF632WAT, ENCFF807MUK 2577463431 ENCODE Processing Pipeline 437520430fa7bde37b07bcadd173559e https://www.encodeproject.org/files/ENCFF118IIC/@@download/ENCFF118IIC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF391WXJ bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF270SAL, ENCFF807MUK, ENCFF861EEE 4064617451 ENCODE Processing Pipeline afff81ef6a6ed9a8fbf0a3e7d2ba7398 https://www.encodeproject.org/files/ENCFF391WXJ/@@download/ENCFF391WXJ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF345IKW bam alignments ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF916BZF, ENCFF930PKX 3485644084 ENCODE Processing Pipeline ff0776a57afdd555c9ea2f839036b821 https://www.encodeproject.org/files/ENCFF345IKW/@@download/ENCFF345IKW.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF494KEU bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 76 ENCFF101EYO, ENCFF807MUK 1272724755 ENCODE Processing Pipeline 7d44a02356f84eca8bb802bb7d7c6255 https://www.encodeproject.org/files/ENCFF494KEU/@@download/ENCFF494KEU.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF608HPC bam alignments ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 76 ENCFF442VDU, ENCFF807MUK 2218500595 ENCODE Processing Pipeline 6f12051c2392057b9d5a61775ccb321a https://www.encodeproject.org/files/ENCFF608HPC/@@download/ENCFF608HPC.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF148POB bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF172SAB, ENCFF615PQS, ENCFF807MUK 4566365015 ENCODE Processing Pipeline bd5b79d251812d5fca24e8775770530c https://www.encodeproject.org/files/ENCFF148POB/@@download/ENCFF148POB.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF520NCD bam alignments ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF594LDJ, ENCFF791QOW, ENCFF807MUK 5495199680 ENCODE Processing Pipeline 102addcd58931b82ad5d38015ff338b8 https://www.encodeproject.org/files/ENCFF520NCD/@@download/ENCFF520NCD.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF949SXE bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 100 ENCFF240EGC, ENCFF807MUK, ENCFF905PWR 7641618380 ENCODE Processing Pipeline 54cc212661afec01bee98e3dbd778dae https://www.encodeproject.org/files/ENCFF949SXE/@@download/ENCFF949SXE.bam hg19 released missing genetic modification characterization ENCFF821SUV bam alignments ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 100 ENCFF306MYT, ENCFF574SDW, ENCFF807MUK 4973965668 ENCODE Processing Pipeline 5d0e9411aa456b724a87cee49d342adb https://www.encodeproject.org/files/ENCFF821SUV/@@download/ENCFF821SUV.bam hg19 released missing genetic modification characterization ENCFF459SLH bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF118UPE, ENCFF807MUK 1085375818 ENCODE Processing Pipeline c02868f40a07de02eace94d2513f1f41 https://www.encodeproject.org/files/ENCFF459SLH/@@download/ENCFF459SLH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF805RHS bam alignments ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF039MUL, ENCFF807MUK 1515774464 ENCODE Processing Pipeline 0dbb12b8959b660bf0a8cd6acdd8dd12 https://www.encodeproject.org/files/ENCFF805RHS/@@download/ENCFF805RHS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF268SHC bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF218BEJ, ENCFF807MUK 891689288 ENCODE Processing Pipeline 1096b47f48f7befd110a0351b9ecc2a1 https://www.encodeproject.org/files/ENCFF268SHC/@@download/ENCFF268SHC.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF878ETO bam alignments ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF432PNM, ENCFF807MUK 1111497884 ENCODE Processing Pipeline f447ac10254a5e68e9ba27984f007dc0 https://www.encodeproject.org/files/ENCFF878ETO/@@download/ENCFF878ETO.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF877MCP bam alignments ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF753KXC, ENCFF775HOD, ENCFF807MUK 4157705131 ENCODE Processing Pipeline dbb3854f962ccd5cfcfc49020258ff40 https://www.encodeproject.org/files/ENCFF877MCP/@@download/ENCFF877MCP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF541AWB bam alignments ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF167BYO, ENCFF807MUK, ENCFF968OEO 3284604545 ENCODE Processing Pipeline 34e9c17d3f9a216362562ba164f19025 https://www.encodeproject.org/files/ENCFF541AWB/@@download/ENCFF541AWB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF764PZX bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 50 ENCFF379LXN, ENCFF807MUK, ENCFF978YQI 659448304 ENCODE Processing Pipeline 254f1cbbd19b531b098c1ec14c204cd0 https://www.encodeproject.org/files/ENCFF764PZX/@@download/ENCFF764PZX.bam hg19 released low read depth, missing genetic modification characterization ENCFF947CVN bam alignments ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF814FHF, ENCFF841KDB 614327383 ENCODE Processing Pipeline 3b8ced888df67bbd778fed0755ea5503 https://www.encodeproject.org/files/ENCFF947CVN/@@download/ENCFF947CVN.bam hg19 released low read depth, missing genetic modification characterization ENCFF007JEJ bam alignments ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF365JJX, ENCFF621MLU, ENCFF807MUK 4509805070 ENCODE Processing Pipeline a99ab6ff3a9aab2bdecd52ba792875d1 https://www.encodeproject.org/files/ENCFF007JEJ/@@download/ENCFF007JEJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF913GCP bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF924FSA 398735147 ENCODE Processing Pipeline 129881e0ff8526fd9f09b3843017b562 https://www.encodeproject.org/files/ENCFF913GCP/@@download/ENCFF913GCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF984PYA bam alignments ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF097RQE, ENCFF807MUK 470911199 ENCODE Processing Pipeline 106a93d329219711196c00af29f16ebc https://www.encodeproject.org/files/ENCFF984PYA/@@download/ENCFF984PYA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF312ULR bam alignments ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF263EXZ, ENCFF489JBV, ENCFF807MUK 3661224717 ENCODE Processing Pipeline 6322d8334b5f7fe74dceb1834b4e055d https://www.encodeproject.org/files/ENCFF312ULR/@@download/ENCFF312ULR.bam hg19 released antibody characterized with exemption ENCFF139ZPI bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF192BLY, ENCFF807MUK 1372881631 ENCODE Processing Pipeline e55d996943ad268df8b9d7f20eb77183 https://www.encodeproject.org/files/ENCFF139ZPI/@@download/ENCFF139ZPI.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF378LSL bam alignments ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF770VIU, ENCFF807MUK 4295679973 ENCODE Processing Pipeline 9471bb53afbd36bdcd8ec3377df3e87e https://www.encodeproject.org/files/ENCFF378LSL/@@download/ENCFF378LSL.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF382EGR bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF654QNS, ENCFF807MUK, ENCFF910ZOL 3147576886 ENCODE Processing Pipeline 7a1542925e703d0dd8b33939f2a01609 https://www.encodeproject.org/files/ENCFF382EGR/@@download/ENCFF382EGR.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF572AJL bam alignments ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF593NHM, ENCFF781IDS, ENCFF807MUK 3880532012 ENCODE Processing Pipeline 2854f0bbb8d2ced78cc7d8208d3dc0fc https://www.encodeproject.org/files/ENCFF572AJL/@@download/ENCFF572AJL.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF394QUX bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 100 ENCFF423WZR, ENCFF807MUK, ENCFF855WMN 4576426948 ENCODE Processing Pipeline f53a9a8d586b15ac9ebca664aa960462 https://www.encodeproject.org/files/ENCFF394QUX/@@download/ENCFF394QUX.bam hg19 released ENCFF402RYM bam alignments ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 100 ENCFF012IRR, ENCFF286CDN, ENCFF807MUK 4194194548 ENCODE Processing Pipeline 9573b7b887aed1adac7622c2a227a6e5 https://www.encodeproject.org/files/ENCFF402RYM/@@download/ENCFF402RYM.bam hg19 released ENCFF866PMJ bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 100 ENCFF061MAR, ENCFF177PDI, ENCFF807MUK 3680830088 ENCODE Processing Pipeline 6c577faa9d34df7a78d4d84cf259e426 https://www.encodeproject.org/files/ENCFF866PMJ/@@download/ENCFF866PMJ.bam hg19 released low read depth ENCFF192BTS bam alignments ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 100 ENCFF050IAW, ENCFF243YFW, ENCFF807MUK 2960123171 ENCODE Processing Pipeline c4d8feebefafc207d4c023b6702fb659 https://www.encodeproject.org/files/ENCFF192BTS/@@download/ENCFF192BTS.bam hg19 released low read depth ENCFF294LCP bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451CMI, ENCFF741MGM, ENCFF807MUK 3339303852 ENCODE Processing Pipeline a58a36de4609cc40e3ee10c7a6111ca4 https://www.encodeproject.org/files/ENCFF294LCP/@@download/ENCFF294LCP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF063MSS bam alignments ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF071VWF, ENCFF699QBM, ENCFF807MUK 4854284699 ENCODE Processing Pipeline ecf2db0e6eaa92ddd0aaf043a096ae23 https://www.encodeproject.org/files/ENCFF063MSS/@@download/ENCFF063MSS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF772DPI bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF385UYP, ENCFF701VYF, ENCFF807MUK 755350368 ENCODE Processing Pipeline 7e9b48ac555fccc0af1482d50d5a0874 https://www.encodeproject.org/files/ENCFF772DPI/@@download/ENCFF772DPI.bam hg19 released low read depth, missing genetic modification characterization ENCFF009ZXV bam alignments ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF346WZR, ENCFF807MUK, ENCFF861PLD 999698272 ENCODE Processing Pipeline 740ef3e38feb6b765f7e2ff53ec7963a https://www.encodeproject.org/files/ENCFF009ZXV/@@download/ENCFF009ZXV.bam hg19 released low read depth, missing genetic modification characterization ENCFF210NKW bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF137DST, ENCFF807MUK 225463752 ENCODE Processing Pipeline e7b81152995e3c5ed9d33f04de6c7c0d https://www.encodeproject.org/files/ENCFF210NKW/@@download/ENCFF210NKW.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF667ECB bam alignments ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF614XZH, ENCFF807MUK 245293733 ENCODE Processing Pipeline 1fd03c702ee3b4918d0c1370e40ade6f https://www.encodeproject.org/files/ENCFF667ECB/@@download/ENCFF667ECB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF769UEW bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 100 ENCFF807MUK, ENCFF895UGJ, ENCFF910QTP 3986942347 ENCODE Processing Pipeline 9ee07c873918c2b86a38967422113e26 https://www.encodeproject.org/files/ENCFF769UEW/@@download/ENCFF769UEW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF080BSG bam alignments ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 100 ENCFF410PAM, ENCFF677ULQ, ENCFF807MUK 6673499996 ENCODE Processing Pipeline 9046923ca8d3466e8e8da7733b51a948 https://www.encodeproject.org/files/ENCFF080BSG/@@download/ENCFF080BSG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF307YVY bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF886ZJD 985434528 ENCODE Processing Pipeline 599499cfe36638bd70f5bb0fd7957f91 https://www.encodeproject.org/files/ENCFF307YVY/@@download/ENCFF307YVY.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF774JUR bam alignments ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF498JVT, ENCFF807MUK 890606270 ENCODE Processing Pipeline a4c4b082b9bad2ae47449407ebfbf7b6 https://www.encodeproject.org/files/ENCFF774JUR/@@download/ENCFF774JUR.bam hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF960FUD bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF381AJO, ENCFF698RJT, ENCFF807MUK 4434335142 ENCODE Processing Pipeline a40b4763fb6e122b39dc61a54cbc6662 https://www.encodeproject.org/files/ENCFF960FUD/@@download/ENCFF960FUD.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF767WRS bam alignments ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF504MVU, ENCFF807MUK, ENCFF887CDX 4254318914 ENCODE Processing Pipeline 93fae145e6e36b2d9c1bc2ef8f1ed107 https://www.encodeproject.org/files/ENCFF767WRS/@@download/ENCFF767WRS.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF375JDH bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF428IIQ, ENCFF807MUK, ENCFF989GZO 2962023548 ENCODE Processing Pipeline 95a2adb885636432d5e549520d317af7 https://www.encodeproject.org/files/ENCFF375JDH/@@download/ENCFF375JDH.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF302UOS bam alignments ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF176UXT, ENCFF317DLF, ENCFF807MUK 5251977183 ENCODE Processing Pipeline b00a37bff2d975811ff3735c4ae9142e https://www.encodeproject.org/files/ENCFF302UOS/@@download/ENCFF302UOS.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF289UDS bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VYM, ENCFF807MUK 695105877 ENCODE Processing Pipeline a0378ebfb66c25e8325c1b296df35402 https://www.encodeproject.org/files/ENCFF289UDS/@@download/ENCFF289UDS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF509RNF bam alignments ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYO, ENCFF807MUK 734644036 ENCODE Processing Pipeline 6b5947940c3bcf70152e540a66cdc645 https://www.encodeproject.org/files/ENCFF509RNF/@@download/ENCFF509RNF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF760ZDH bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUO, ENCFF807MUK 436549858 ENCODE Processing Pipeline 6be1f13593df3e79895c8ee5c24fd161 https://www.encodeproject.org/files/ENCFF760ZDH/@@download/ENCFF760ZDH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF450UXL bam alignments ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUP, ENCFF807MUK 560438095 ENCODE Processing Pipeline 4d614498d792ce60254f058d49f2750f https://www.encodeproject.org/files/ENCFF450UXL/@@download/ENCFF450UXL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF689YYU bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF302XOK, ENCFF807MUK 775248669 ENCODE Processing Pipeline 6421c4ffd3327df3608bb8f8e2aeaf1e https://www.encodeproject.org/files/ENCFF689YYU/@@download/ENCFF689YYU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF295XEM bam alignments ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF500ZBE, ENCFF807MUK 1800239622 ENCODE Processing Pipeline bc38c210846c98df14e31ed8b66819a6 https://www.encodeproject.org/files/ENCFF295XEM/@@download/ENCFF295XEM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF984QQT bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 100 ENCFF401OZY, ENCFF672AOW, ENCFF807MUK 4375593099 ENCODE Processing Pipeline a4bef7688ce02d095e1ceefc39630fd5 https://www.encodeproject.org/files/ENCFF984QQT/@@download/ENCFF984QQT.bam hg19 released mild to moderate bottlenecking ENCFF892UVF bam alignments ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 100 ENCFF468WZY, ENCFF761NME, ENCFF807MUK 6339932850 ENCODE Processing Pipeline 402e3d4e4607caa0fcf1104a44f1c271 https://www.encodeproject.org/files/ENCFF892UVF/@@download/ENCFF892UVF.bam hg19 released mild to moderate bottlenecking ENCFF515BLD bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF978CPC 938124002 ENCODE Processing Pipeline ab880777a49f7aa488583b991faf236c https://www.encodeproject.org/files/ENCFF515BLD/@@download/ENCFF515BLD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF263ZVJ bam alignments ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 50 ENCFF215GBK, ENCFF807MUK 1224650875 ENCODE Processing Pipeline 407e3f0980a1a0078c3fab7c41773a33 https://www.encodeproject.org/files/ENCFF263ZVJ/@@download/ENCFF263ZVJ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF293TTT bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BEL, ENCFF807MUK 656913416 ENCODE Processing Pipeline a8a1630e4d654c1a47a7654313a1f253 https://www.encodeproject.org/files/ENCFF293TTT/@@download/ENCFF293TTT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF978OOP bam alignments ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BEQ, ENCFF807MUK 1783194109 ENCODE Processing Pipeline e9264a1c5e4701c6b42e8ac6f6b56ca0 https://www.encodeproject.org/files/ENCFF978OOP/@@download/ENCFF978OOP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF024MPE bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 100 ENCFF474LQU, ENCFF532XZW, ENCFF807MUK 4204614264 ENCODE Processing Pipeline 5752bc3337888c69d4b358adf2d18067 https://www.encodeproject.org/files/ENCFF024MPE/@@download/ENCFF024MPE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF866OLR bam alignments ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 100 ENCFF141RCB, ENCFF781WSM, ENCFF807MUK 4495717653 ENCODE Processing Pipeline 93d63ad8b3ec69528ee87d465ef2a25c https://www.encodeproject.org/files/ENCFF866OLR/@@download/ENCFF866OLR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF195ADD bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 100 ENCFF219PKK, ENCFF522PJZ, ENCFF807MUK 4758972576 ENCODE Processing Pipeline e23d9df77784794eb6932e91e37ea62d https://www.encodeproject.org/files/ENCFF195ADD/@@download/ENCFF195ADD.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF170QJT bam alignments ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 100 ENCFF393JDU, ENCFF758PBW, ENCFF807MUK 2567429331 ENCODE Processing Pipeline 31ab2c31031c51a4b1715ae77271a9fa https://www.encodeproject.org/files/ENCFF170QJT/@@download/ENCFF170QJT.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF834GPI bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPA, ENCFF807MUK 269802543 ENCODE Processing Pipeline e9315a43ef34040c0d6a2a320b997396 https://www.encodeproject.org/files/ENCFF834GPI/@@download/ENCFF834GPI.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF203FSU bam alignments ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPC, ENCFF807MUK 348228954 ENCODE Processing Pipeline c2567e33c966d2221371a5914563bf2b https://www.encodeproject.org/files/ENCFF203FSU/@@download/ENCFF203FSU.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF146HTM bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PYD, ENCFF807MUK 306007950 ENCODE Processing Pipeline eda5b6d156cf262e706afa72a476bac1 https://www.encodeproject.org/files/ENCFF146HTM/@@download/ENCFF146HTM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF866NKL bam alignments ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PYJ, ENCFF807MUK 630671315 ENCODE Processing Pipeline 90c3098dbefe8da0745bb40bae6c4999 https://www.encodeproject.org/files/ENCFF866NKL/@@download/ENCFF866NKL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF392JWS bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZRE, ENCFF807MUK 958593000 ENCODE Processing Pipeline ac1fbab3a63ed1f1fa9c5a28b02828f6 https://www.encodeproject.org/files/ENCFF392JWS/@@download/ENCFF392JWS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF749FQP bam alignments ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZRG, ENCFF807MUK 728033363 ENCODE Processing Pipeline 14c11007a7ac4d7c436a5727f0db8ae7 https://www.encodeproject.org/files/ENCFF749FQP/@@download/ENCFF749FQP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF373JKP bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMZ, ENCFF807MUK 629664344 ENCODE Processing Pipeline 1465cd5a3cae91c83ea71c9af8ab4b8d https://www.encodeproject.org/files/ENCFF373JKP/@@download/ENCFF373JKP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF581OIB bam alignments ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNA, ENCFF807MUK 915914626 ENCODE Processing Pipeline 82247508f2d9afd0b03e0fb4cc2c5189 https://www.encodeproject.org/files/ENCFF581OIB/@@download/ENCFF581OIB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF781IPH bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOO, ENCFF807MUK 319923251 ENCODE Processing Pipeline 546498add3f0a8f67ee28caac364e9b3 https://www.encodeproject.org/files/ENCFF781IPH/@@download/ENCFF781IPH.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF005ZIF bam alignments ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOM, ENCFF807MUK 242888278 ENCODE Processing Pipeline dcfecf5d6d2835f7e7c91fb7d8fe8ba2 https://www.encodeproject.org/files/ENCFF005ZIF/@@download/ENCFF005ZIF.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF982XUS bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 100 ENCFF059NSA, ENCFF666XKI, ENCFF807MUK 4159609572 ENCODE Processing Pipeline 47288cd72f354ac042e758367019969d https://www.encodeproject.org/files/ENCFF982XUS/@@download/ENCFF982XUS.bam hg19 released mild to moderate bottlenecking ENCFF557UXG bam alignments ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 100 ENCFF807MUK, ENCFF956KKU, ENCFF957QWK 4602554646 ENCODE Processing Pipeline ef777f1b86be9283605433899b75c7c1 https://www.encodeproject.org/files/ENCFF557UXG/@@download/ENCFF557UXG.bam hg19 released mild to moderate bottlenecking ENCFF064JKD bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF698SDI, ENCFF807MUK 887308523 ENCODE Processing Pipeline d052dfdbbe2641801445ee77a6b13a4a https://www.encodeproject.org/files/ENCFF064JKD/@@download/ENCFF064JKD.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF894WFR bam alignments ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF486HCN, ENCFF807MUK 720633794 ENCODE Processing Pipeline 20dafa6ee5d83562e91930a950a81347 https://www.encodeproject.org/files/ENCFF894WFR/@@download/ENCFF894WFR.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF364YRB bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SCF, ENCFF807MUK 816061448 ENCODE Processing Pipeline b5c4cfd11f9d984d79b4b180b5f2d231 https://www.encodeproject.org/files/ENCFF364YRB/@@download/ENCFF364YRB.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF446HAE bam alignments ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SCC, ENCFF807MUK 581364310 ENCODE Processing Pipeline 0e6d7855df8debb91a6244a8b9711ef0 https://www.encodeproject.org/files/ENCFF446HAE/@@download/ENCFF446HAE.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF435EWI bam alignments ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF850QKH, ENCFF985MPR 4718261718 ENCODE Processing Pipeline 14f5b99bd6b993a31ac60d935a98a4a5 https://www.encodeproject.org/files/ENCFF435EWI/@@download/ENCFF435EWI.bam hg19 released antibody characterized with exemption missing control alignments ENCFF632AHN bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMI, ENCFF807MUK 442840254 ENCODE Processing Pipeline db692737fbbc25269e563b9f8ef850f6 https://www.encodeproject.org/files/ENCFF632AHN/@@download/ENCFF632AHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF790IAM bam alignments ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OML, ENCFF807MUK 785178821 ENCODE Processing Pipeline 61eb4b6269d6b4526cf1da709fcebd83 https://www.encodeproject.org/files/ENCFF790IAM/@@download/ENCFF790IAM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF031YAG bam alignments ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF339LBU, ENCFF349ISG, ENCFF807MUK 3195959043 ENCODE Processing Pipeline 37fad7cf76775120215dc007e7f7d368 https://www.encodeproject.org/files/ENCFF031YAG/@@download/ENCFF031YAG.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF000NRJ bam alignments ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRZ 1502759469 Richard Myers, HAIB f595b2f8fd9730f07315ed222fa3e1bd https://www.encodeproject.org/files/ENCFF000NRJ/@@download/ENCFF000NRJ.bam hg19 released biological replicates with identical biosample ENCFF000NRL bam alignments ENCSR000BSZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRX 1428977627 Richard Myers, HAIB 295d4669b37cf43c2825e58d37a9ea78 https://www.encodeproject.org/files/ENCFF000NRL/@@download/ENCFF000NRL.bam hg19 released biological replicates with identical biosample ENCFF222XNY bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF150KRT, ENCFF807MUK, ENCFF983NMP 4394540487 ENCODE Processing Pipeline c6ab8e2c0382e85b7f40bcaee215deaf https://www.encodeproject.org/files/ENCFF222XNY/@@download/ENCFF222XNY.bam hg19 released low read depth ENCFF880NAD bam alignments ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 100 ENCFF112ZYY, ENCFF567LMF, ENCFF807MUK 3656437678 ENCODE Processing Pipeline 6f933604ee9fd15c5029f91d43f38bb3 https://www.encodeproject.org/files/ENCFF880NAD/@@download/ENCFF880NAD.bam hg19 released low read depth ENCFF566NKP bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZEK, ENCFF807MUK 284142408 ENCODE Processing Pipeline d28da66381c066f47a0d7133fd3dfee5 https://www.encodeproject.org/files/ENCFF566NKP/@@download/ENCFF566NKP.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF193QAR bam alignments ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZEJ, ENCFF807MUK 293535188 ENCODE Processing Pipeline 8be94d5d41c2c44052f16a546987a860 https://www.encodeproject.org/files/ENCFF193QAR/@@download/ENCFF193QAR.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF112ARH bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 100 ENCFF413ICF, ENCFF744BML, ENCFF807MUK 4663355962 ENCODE Processing Pipeline bb66dd728b1da0f0518fdd662a5f7742 https://www.encodeproject.org/files/ENCFF112ARH/@@download/ENCFF112ARH.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF517SOJ bam alignments ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 100 ENCFF124AQZ, ENCFF807MUK, ENCFF841SWR 4925213448 ENCODE Processing Pipeline 5c5844941dc157da7b85127c9839ea4c https://www.encodeproject.org/files/ENCFF517SOJ/@@download/ENCFF517SOJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF988XFX bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF807MUK, ENCFF876KCK 1414385631 ENCODE Processing Pipeline 9793e0341d1da85c4fe353b7ffa7afc6 https://www.encodeproject.org/files/ENCFF988XFX/@@download/ENCFF988XFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF910AAQ bam alignments ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF807MUK, ENCFF996PYT 1779048513 ENCODE Processing Pipeline 8437ba00b4d4c264d3f5adb7df7bacb7 https://www.encodeproject.org/files/ENCFF910AAQ/@@download/ENCFF910AAQ.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF902ZSU bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EBZ, ENCFF807MUK 947791634 ENCODE Processing Pipeline 9b96d80cba0dcfe24ae39ba163feae84 https://www.encodeproject.org/files/ENCFF902ZSU/@@download/ENCFF902ZSU.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF741WGR bam alignments ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002ECE, ENCFF807MUK 876174153 ENCODE Processing Pipeline e515ee43f4b6457bbafa1139407a2de8 https://www.encodeproject.org/files/ENCFF741WGR/@@download/ENCFF741WGR.bam hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF719JNQ bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 100 ENCFF470MPB, ENCFF742JMT, ENCFF807MUK 7648065426 ENCODE Processing Pipeline 1d5bc3a6b8b7af93e02676aa5b54e3c7 https://www.encodeproject.org/files/ENCFF719JNQ/@@download/ENCFF719JNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF521MJN bam alignments ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 100 ENCFF411FCT, ENCFF446JLZ, ENCFF807MUK 5643757224 ENCODE Processing Pipeline 5247f36fa90ea7374503cb8dd706b2a1 https://www.encodeproject.org/files/ENCFF521MJN/@@download/ENCFF521MJN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF802ETH bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 50 ENCFF745TQE, ENCFF807MUK 1260026599 ENCODE Processing Pipeline b3e40f7c26f18d39bb2cf1fb002d720e https://www.encodeproject.org/files/ENCFF802ETH/@@download/ENCFF802ETH.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF849EIR bam alignments ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 50 ENCFF664SNF, ENCFF807MUK 1398150042 ENCODE Processing Pipeline 33e9ec424aa4c7af03be262fea8083d6 https://www.encodeproject.org/files/ENCFF849EIR/@@download/ENCFF849EIR.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF293WLB bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF249BHU, ENCFF807MUK 795112595 ENCODE Processing Pipeline f0c2d60236bbeebf4b121de7a0ef22a9 https://www.encodeproject.org/files/ENCFF293WLB/@@download/ENCFF293WLB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF811PZE bam alignments ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF457HUL, ENCFF807MUK 1155624680 ENCODE Processing Pipeline 06aa4dda70009b6b4efcbf492724b5d3 https://www.encodeproject.org/files/ENCFF811PZE/@@download/ENCFF811PZE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF186KYZ bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 50 ENCFF082XMZ, ENCFF807MUK 589973230 ENCODE Processing Pipeline d148188c1e9aba56f5520e6182d3cfa7 https://www.encodeproject.org/files/ENCFF186KYZ/@@download/ENCFF186KYZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF121VXJ bam alignments ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 50 ENCFF638ZSQ, ENCFF807MUK 791329952 ENCODE Processing Pipeline da755cceba8e88abc0f5e3bd3d257db8 https://www.encodeproject.org/files/ENCFF121VXJ/@@download/ENCFF121VXJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF354IGM bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 50 ENCFF807MUK, ENCFF855OMG 1231149238 ENCODE Processing Pipeline d31533ad89e812751fa92dd1abdda1f4 https://www.encodeproject.org/files/ENCFF354IGM/@@download/ENCFF354IGM.bam hg19 released antibody characterized with exemption ENCFF356PMF bam alignments ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 50 ENCFF545DFQ, ENCFF807MUK 1258158493 ENCODE Processing Pipeline 81b887684115ee16d2be154af102071d https://www.encodeproject.org/files/ENCFF356PMF/@@download/ENCFF356PMF.bam hg19 released antibody characterized with exemption ENCFF489ACL bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 100 ENCFF497SRX, ENCFF571LSL, ENCFF807MUK 4739484406 ENCODE Processing Pipeline a8116f9bb5e713dfff9174b2e0c17c44 https://www.encodeproject.org/files/ENCFF489ACL/@@download/ENCFF489ACL.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF970LPR bam alignments ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 100 ENCFF451LYL, ENCFF513XHM, ENCFF807MUK 5923970706 ENCODE Processing Pipeline 076508ef1c4867218af71076d7180df5 https://www.encodeproject.org/files/ENCFF970LPR/@@download/ENCFF970LPR.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF000NPY bam alignments ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NQI 824808008 Richard Myers, HAIB 7ade57b694abb7d0d37100614d744848 https://www.encodeproject.org/files/ENCFF000NPY/@@download/ENCFF000NPY.bam hg19 released biological replicates with identical biosample ENCFF000NQC bam alignments ENCSR000BTO ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NQR 2786261745 Richard Myers, HAIB 738856f7a8760fc6924c4f40de933d6e https://www.encodeproject.org/files/ENCFF000NQC/@@download/ENCFF000NQC.bam hg19 released biological replicates with identical biosample ENCFF708NLM bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 100 ENCFF066RUQ, ENCFF807MUK, ENCFF964VCI 2555054563 ENCODE Processing Pipeline e8e1ad92e262be4c4f80c8ecb45f8402 https://www.encodeproject.org/files/ENCFF708NLM/@@download/ENCFF708NLM.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF341WGX bam alignments ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 100 ENCFF156SNY, ENCFF487QUS, ENCFF807MUK 3947295810 ENCODE Processing Pipeline 71fe628b9fece7d2a014fe4ec8a1dd5d https://www.encodeproject.org/files/ENCFF341WGX/@@download/ENCFF341WGX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF185WOT bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF585PXT, ENCFF807MUK, ENCFF949JWR 5720407869 ENCODE Processing Pipeline 33ab551cb227fe3932b89fd0fbec4342 https://www.encodeproject.org/files/ENCFF185WOT/@@download/ENCFF185WOT.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF089HFZ bam alignments ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF405NIJ, ENCFF807MUK, ENCFF836KYO 6035606683 ENCODE Processing Pipeline 5f8c805b8c8a76425a2bd81bbebde669 https://www.encodeproject.org/files/ENCFF089HFZ/@@download/ENCFF089HFZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF299MPV bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF551VXN, ENCFF807MUK 1640727748 ENCODE Processing Pipeline c151528ddfb22b80bf4c648cc1a9ac02 https://www.encodeproject.org/files/ENCFF299MPV/@@download/ENCFF299MPV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF571ICH bam alignments ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF296VAW, ENCFF807MUK 1397573052 ENCODE Processing Pipeline 072ce7dc5795d31ae51a4a4850a3b99d https://www.encodeproject.org/files/ENCFF571ICH/@@download/ENCFF571ICH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF331AQC bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIW, ENCFF807MUK 692667752 ENCODE Processing Pipeline dd01f7065da72f81e96f3b1d5d66d9be https://www.encodeproject.org/files/ENCFF331AQC/@@download/ENCFF331AQC.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF624MYA bam alignments ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIZ, ENCFF807MUK 747653763 ENCODE Processing Pipeline 1e46a40e44edaedfbc7e925140aa65f6 https://www.encodeproject.org/files/ENCFF624MYA/@@download/ENCFF624MYA.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF029GAR bam alignments ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF019BTC, ENCFF807MUK, ENCFF894LNI 3974806693 ENCODE Processing Pipeline 8e68c0db87d9e99361baa6626cf0fbf5 https://www.encodeproject.org/files/ENCFF029GAR/@@download/ENCFF029GAR.bam hg19 released antibody characterized with exemption ENCFF000XMI bam alignments ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XML 644370635 Peggy Farnham, USC 10d68944ee6cccd3033daae46608d3fc https://www.encodeproject.org/files/ENCFF000XMI/@@download/ENCFF000XMI.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XMJ bam alignments ENCSR000EVE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XMN 741044494 Peggy Farnham, USC 954b892485ed7cf90309f84b09a34d03 https://www.encodeproject.org/files/ENCFF000XMJ/@@download/ENCFF000XMJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF502VMV bam alignments ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF663CEY, ENCFF807MUK, ENCFF913NPA 3262396096 ENCODE Processing Pipeline c4a801151deae364344436f93b29a805 https://www.encodeproject.org/files/ENCFF502VMV/@@download/ENCFF502VMV.bam hg19 released antibody characterized with exemption missing control alignments ENCFF503PLN bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF319OJB, ENCFF421XZN, ENCFF807MUK 7523346762 ENCODE Processing Pipeline 371d798136b9392aaf8f333589eaa89d https://www.encodeproject.org/files/ENCFF503PLN/@@download/ENCFF503PLN.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF664QKK bam alignments ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF197WID, ENCFF807MUK, ENCFF845UON 6965057128 ENCODE Processing Pipeline a53e9e9d81796dd9165453ddf5217231 https://www.encodeproject.org/files/ENCFF664QKK/@@download/ENCFF664QKK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF356EIA bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000RJG, ENCFF807MUK 939738927 ENCODE Processing Pipeline 3f3db672195fe98601775adda769d24d https://www.encodeproject.org/files/ENCFF356EIA/@@download/ENCFF356EIA.bam hg19 released low read depth biological replicates with identical biosample ENCFF596HMK bam alignments ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000RJM, ENCFF807MUK 1446527077 ENCODE Processing Pipeline 9a41adcfc61fa936fcd1f557de5a1986 https://www.encodeproject.org/files/ENCFF596HMK/@@download/ENCFF596HMK.bam hg19 released low read depth biological replicates with identical biosample ENCFF518GRP bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 50 ENCFF435TOG, ENCFF807MUK 1102293383 ENCODE Processing Pipeline 559578d3ae13356a5089e75b5dd1ff9d https://www.encodeproject.org/files/ENCFF518GRP/@@download/ENCFF518GRP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF924XUU bam alignments ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 50 ENCFF366KUG, ENCFF807MUK 842128068 ENCODE Processing Pipeline cd9304a964fcf6e83c804ea0d476e4c4 https://www.encodeproject.org/files/ENCFF924XUU/@@download/ENCFF924XUU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF020MRS bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVL, ENCFF807MUK 543743786 ENCODE Processing Pipeline 31a256e4eed32c79ae9a30e245fb7140 https://www.encodeproject.org/files/ENCFF020MRS/@@download/ENCFF020MRS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF441SQQ bam alignments ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVH, ENCFF807MUK 654225187 ENCODE Processing Pipeline 08dff2f41f210bfe945533fb0a9cbd59 https://www.encodeproject.org/files/ENCFF441SQQ/@@download/ENCFF441SQQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF782VOH bam alignments ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF547VRG, ENCFF678KER, ENCFF807MUK 3111117233 ENCODE Processing Pipeline d5cc05767e6d26f1d5e5413d2125c305 https://www.encodeproject.org/files/ENCFF782VOH/@@download/ENCFF782VOH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF682QIZ bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF399FVC, ENCFF807MUK 664025355 ENCODE Processing Pipeline 33990b24f29091ad7225aa1b9fe33647 https://www.encodeproject.org/files/ENCFF682QIZ/@@download/ENCFF682QIZ.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF297FMS bam alignments ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF052AWV, ENCFF807MUK 739929430 ENCODE Processing Pipeline 495fb3bb287c55ff050a9ae9da44447f https://www.encodeproject.org/files/ENCFF297FMS/@@download/ENCFF297FMS.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF771VGT bam alignments ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF620QLM, ENCFF768AUO, ENCFF807MUK 3318991548 ENCODE Processing Pipeline c382992042e15d4ff85608bdb6033bba https://www.encodeproject.org/files/ENCFF771VGT/@@download/ENCFF771VGT.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF513CSC bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAJ, ENCFF807MUK 642347984 ENCODE Processing Pipeline a4b8facd77c7cc6b29a50d27fa6a8eba https://www.encodeproject.org/files/ENCFF513CSC/@@download/ENCFF513CSC.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF689HKH bam alignments ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAI, ENCFF807MUK 989893299 ENCODE Processing Pipeline d18d97e1822451da9d01bcb21322d16b https://www.encodeproject.org/files/ENCFF689HKH/@@download/ENCFF689HKH.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF403XAG bam alignments ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF419ZMU, ENCFF807MUK, ENCFF950XSB 3381817408 ENCODE Processing Pipeline 2456f0f750f49f0c7ce501aa65be82c5 https://www.encodeproject.org/files/ENCFF403XAG/@@download/ENCFF403XAG.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000PBR bam alignments ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCD 1270146936 Richard Myers, HAIB f43b09234e217565ba9720987a1e603e https://www.encodeproject.org/files/ENCFF000PBR/@@download/ENCFF000PBR.bam hg19 released biological replicates with identical biosample ENCFF000PBU bam alignments ENCSR000BSG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCE 1500257033 Richard Myers, HAIB 72bb69e1b83472b4304afb9e6df4597a https://www.encodeproject.org/files/ENCFF000PBU/@@download/ENCFF000PBU.bam hg19 released biological replicates with identical biosample ENCFF679MUX bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 50 ENCFF442RQA, ENCFF807MUK 1089445243 ENCODE Processing Pipeline 6e13c1b81f936aa68d5891290c30df43 https://www.encodeproject.org/files/ENCFF679MUX/@@download/ENCFF679MUX.bam hg19 released low read depth ENCFF305LRO bam alignments ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 50 ENCFF194UYN, ENCFF807MUK 1205497176 ENCODE Processing Pipeline ac9ad6198085b9a273398d0238acb6bd https://www.encodeproject.org/files/ENCFF305LRO/@@download/ENCFF305LRO.bam hg19 released low read depth ENCFF573RUL bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF409XOE, ENCFF807MUK 1065109372 ENCODE Processing Pipeline 9e20e8297df2889499544832d7a9fbe3 https://www.encodeproject.org/files/ENCFF573RUL/@@download/ENCFF573RUL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF553BBH bam alignments ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF701LMH, ENCFF807MUK 1339887359 ENCODE Processing Pipeline 72f63ea70c2d17bc113d6155183b923a https://www.encodeproject.org/files/ENCFF553BBH/@@download/ENCFF553BBH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF520IDM bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF934JOM 1237165199 ENCODE Processing Pipeline b054e86b0ddfe0b4d1360e0f4162a5ab https://www.encodeproject.org/files/ENCFF520IDM/@@download/ENCFF520IDM.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF668CFX bam alignments ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF546JVU, ENCFF807MUK 1241365854 ENCODE Processing Pipeline 9fc9d9da441a31a5e9e35fc3ec476599 https://www.encodeproject.org/files/ENCFF668CFX/@@download/ENCFF668CFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF432HQR bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF888RXZ 911681757 ENCODE Processing Pipeline beac418c938d7f76e973fe591858154d https://www.encodeproject.org/files/ENCFF432HQR/@@download/ENCFF432HQR.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF274NHB bam alignments ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 50 ENCFF039EYW, ENCFF807MUK 1102592311 ENCODE Processing Pipeline ff4bdb98674501b27ed6408eee98508a https://www.encodeproject.org/files/ENCFF274NHB/@@download/ENCFF274NHB.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF139XLL bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF403AAR, ENCFF783FQX, ENCFF807MUK 4819891801 ENCODE Processing Pipeline 9ea7e0c7cf847813c98072e7516e5af0 https://www.encodeproject.org/files/ENCFF139XLL/@@download/ENCFF139XLL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF662JKA bam alignments ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF425OTY, ENCFF432ECI, ENCFF807MUK 6168359310 ENCODE Processing Pipeline 85a895662ebbbe37453b7bc4965b7f4f https://www.encodeproject.org/files/ENCFF662JKA/@@download/ENCFF662JKA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF150BNL bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 50 ENCFF440FTO, ENCFF807MUK 1138084234 ENCODE Processing Pipeline 69d9c8d6ae407fee6baf33385a62f17c https://www.encodeproject.org/files/ENCFF150BNL/@@download/ENCFF150BNL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF097YMB bam alignments ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 50 ENCFF776IQU, ENCFF807MUK 1225359379 ENCODE Processing Pipeline 20beba0b3546a4929d77b0ade0e58f67 https://www.encodeproject.org/files/ENCFF097YMB/@@download/ENCFF097YMB.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF276ETD bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF269CGY, ENCFF807MUK 1359599673 ENCODE Processing Pipeline 9db0e68eebc19ede14ba39513da51f68 https://www.encodeproject.org/files/ENCFF276ETD/@@download/ENCFF276ETD.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF379HIU bam alignments ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF296CSX, ENCFF807MUK 1167416914 ENCODE Processing Pipeline 8e340271b5885bcd69f61a9881e42474 https://www.encodeproject.org/files/ENCFF379HIU/@@download/ENCFF379HIU.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF738KRH bam alignments ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF184WLG, ENCFF205RPZ, ENCFF807MUK 2660312309 ENCODE Processing Pipeline 9cdfef7077aa49bc0ada880234603ff8 https://www.encodeproject.org/files/ENCFF738KRH/@@download/ENCFF738KRH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF658ADO bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF022SAF, ENCFF277ZND, ENCFF446YHR, ENCFF524UOO, ENCFF807MUK 3439976857 ENCODE Processing Pipeline 5556514db160db4778806961082f94be https://www.encodeproject.org/files/ENCFF658ADO/@@download/ENCFF658ADO.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF800BIH bam alignments ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF613UAT, ENCFF618IBA, ENCFF807MUK 2764817616 ENCODE Processing Pipeline 3935af74c9962cfe8db1fbee67ed9981 https://www.encodeproject.org/files/ENCFF800BIH/@@download/ENCFF800BIH.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF837JGZ bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF370YRD, ENCFF571OVI, ENCFF807MUK 4333350845 ENCODE Processing Pipeline ad537d4b37d903472e2ccfa361b53dea https://www.encodeproject.org/files/ENCFF837JGZ/@@download/ENCFF837JGZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF285GPK bam alignments ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF377QZD, ENCFF639NST, ENCFF807MUK 4628792353 ENCODE Processing Pipeline 7866e6fd77504b5d638a1f87558e607b https://www.encodeproject.org/files/ENCFF285GPK/@@download/ENCFF285GPK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF816UDH bam alignments ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF063DDH, ENCFF807MUK, ENCFF955ITN 3694036826 ENCODE Processing Pipeline d52129f8f49d3f3bdc4c77208a923e50 https://www.encodeproject.org/files/ENCFF816UDH/@@download/ENCFF816UDH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF058VAU bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YKO, ENCFF807MUK 626699491 ENCODE Processing Pipeline f99c1bf8ab548f793ff2651717ebba39 https://www.encodeproject.org/files/ENCFF058VAU/@@download/ENCFF058VAU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384WMI bam alignments ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YKR, ENCFF807MUK 782947503 ENCODE Processing Pipeline f8e026b76c135ba53bc351c601c79b0c https://www.encodeproject.org/files/ENCFF384WMI/@@download/ENCFF384WMI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF357MEA bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF264IWL, ENCFF483AVN, ENCFF807MUK 4811183393 ENCODE Processing Pipeline ce908ce6201031d31874c73bc9e4eedb https://www.encodeproject.org/files/ENCFF357MEA/@@download/ENCFF357MEA.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF658DNV bam alignments ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF339NHI, ENCFF677HTA, ENCFF807MUK 6875388800 ENCODE Processing Pipeline 1392a7f04822ded04806efa7fe388c35 https://www.encodeproject.org/files/ENCFF658DNV/@@download/ENCFF658DNV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF675VOA bam alignments ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF918SCN, ENCFF998ZNW 2957500250 ENCODE Processing Pipeline 5238e3c71955a2600c49c73beb807372 https://www.encodeproject.org/files/ENCFF675VOA/@@download/ENCFF675VOA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF395GQA bam alignments ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF389ZTP, ENCFF788KCN, ENCFF807MUK 3596058325 ENCODE Processing Pipeline e48f3787a3c7a48a52541cda2aec075c https://www.encodeproject.org/files/ENCFF395GQA/@@download/ENCFF395GQA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF446BUP bam alignments ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF113JGC, ENCFF506ONU, ENCFF807MUK 4578143464 ENCODE Processing Pipeline c06d8307dbba8e86a12b276e42006857 https://www.encodeproject.org/files/ENCFF446BUP/@@download/ENCFF446BUP.bam hg19 released antibody characterized with exemption ENCFF581BEE bam alignments ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF310NHP, ENCFF807MUK, ENCFF903PDX 3268500185 ENCODE Processing Pipeline 748d9ee0694b18970403b75c7194da2d https://www.encodeproject.org/files/ENCFF581BEE/@@download/ENCFF581BEE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF996ZXG bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZDU, ENCFF807MUK 702909939 ENCODE Processing Pipeline 4ce3fcd1bb05a49d9d2f820d87fb7e06 https://www.encodeproject.org/files/ENCFF996ZXG/@@download/ENCFF996ZXG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF349TZM bam alignments ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZDS, ENCFF807MUK 904249284 ENCODE Processing Pipeline 7f0b16d70cfb954634729119e6084cec https://www.encodeproject.org/files/ENCFF349TZM/@@download/ENCFF349TZM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF339TGE bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAU, ENCFF807MUK 951926495 ENCODE Processing Pipeline 4a3398b99803861b9dabbc1b57c6c795 https://www.encodeproject.org/files/ENCFF339TGE/@@download/ENCFF339TGE.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF042GNN bam alignments ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAS, ENCFF807MUK 938094989 ENCODE Processing Pipeline c57dfe52fdfa745298698489b5532805 https://www.encodeproject.org/files/ENCFF042GNN/@@download/ENCFF042GNN.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF032EMH bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF455PUN, ENCFF788SAX, ENCFF807MUK 4291813145 ENCODE Processing Pipeline 9706617d46fa660edb5f9b670f07425b https://www.encodeproject.org/files/ENCFF032EMH/@@download/ENCFF032EMH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF566BBU bam alignments ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF249RTD, ENCFF801ZZV, ENCFF807MUK 5294110385 ENCODE Processing Pipeline 7482089cbec252e2cec78b07578fcf1e https://www.encodeproject.org/files/ENCFF566BBU/@@download/ENCFF566BBU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF455LUX bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF298TOW, ENCFF799EIX, ENCFF807MUK 3302617368 ENCODE Processing Pipeline b5262da70603ce62777d8e862c1d7a7e https://www.encodeproject.org/files/ENCFF455LUX/@@download/ENCFF455LUX.bam hg19 released experiment not submitted to GEO ENCFF747YRH bam alignments ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF116KHO, ENCFF536FQC, ENCFF807MUK 3969732816 ENCODE Processing Pipeline f5b4affc8d06ea234bdb4dfc24608c47 https://www.encodeproject.org/files/ENCFF747YRH/@@download/ENCFF747YRH.bam hg19 released experiment not submitted to GEO ENCFF849SJW bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF615EAA, ENCFF807MUK, ENCFF839WCB 4398912575 ENCODE Processing Pipeline 68634282fa27a8898fac98a2cba9d50d https://www.encodeproject.org/files/ENCFF849SJW/@@download/ENCFF849SJW.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF188BAD bam alignments ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF548RDN, ENCFF807MUK, ENCFF870PPB 4836550638 ENCODE Processing Pipeline fbb4cd9c0716e8aad6f57f0360a9ee21 https://www.encodeproject.org/files/ENCFF188BAD/@@download/ENCFF188BAD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF134TXS bam alignments ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF248TRL, ENCFF543ODV, ENCFF807MUK 3478777116 ENCODE Processing Pipeline 541a893750db54c8a2a8fcccdda42728 https://www.encodeproject.org/files/ENCFF134TXS/@@download/ENCFF134TXS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767XMC bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YBW, ENCFF807MUK 609026558 ENCODE Processing Pipeline a656cf8ab7d0447cfbf7c0e09fdb7c8b https://www.encodeproject.org/files/ENCFF767XMC/@@download/ENCFF767XMC.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF437KCG bam alignments ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YBU, ENCFF807MUK 790393719 ENCODE Processing Pipeline f412960703e53677f7fd8a2118e00f01 https://www.encodeproject.org/files/ENCFF437KCG/@@download/ENCFF437KCG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF304JLC bam alignments ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 100 ENCFF745FWK, ENCFF807MUK, ENCFF915DUI 2481625400 ENCODE Processing Pipeline 8e75cf8824fde721f5be2c3c9de0b7fb https://www.encodeproject.org/files/ENCFF304JLC/@@download/ENCFF304JLC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF954WQD bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQK, ENCFF807MUK 846820945 ENCODE Processing Pipeline c3be77f669d59e14e9dd1d31e0d02009 https://www.encodeproject.org/files/ENCFF954WQD/@@download/ENCFF954WQD.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF931GZJ bam alignments ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQI, ENCFF807MUK 872005360 ENCODE Processing Pipeline b29dccbd58a97c44f8857cf93dae4e55 https://www.encodeproject.org/files/ENCFF931GZJ/@@download/ENCFF931GZJ.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF687OFO bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 100 ENCFF188VON, ENCFF574FTC, ENCFF807MUK 3757521635 ENCODE Processing Pipeline 9e0e08c32cf434ce838c37a56b8e85a5 https://www.encodeproject.org/files/ENCFF687OFO/@@download/ENCFF687OFO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF623FBO bam alignments ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 100 ENCFF744DBX, ENCFF807MUK, ENCFF834VSH 3572703204 ENCODE Processing Pipeline a2cb4567d6fa17f6324d2bbd918b3adb https://www.encodeproject.org/files/ENCFF623FBO/@@download/ENCFF623FBO.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF093JHV bam alignments ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF296OXR, ENCFF565IZM, ENCFF807MUK 3606771690 ENCODE Processing Pipeline 7fc2b1189155bc7dfa9f6528b6f49ddb https://www.encodeproject.org/files/ENCFF093JHV/@@download/ENCFF093JHV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF226XCD bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 100 ENCFF698YEB, ENCFF807MUK, ENCFF844OMR 5385572465 ENCODE Processing Pipeline 0f8c35045bb68a5b62a2b806ef6f1d94 https://www.encodeproject.org/files/ENCFF226XCD/@@download/ENCFF226XCD.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF895ARY bam alignments ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 100 ENCFF173LQG, ENCFF611URC, ENCFF807MUK 5054665382 ENCODE Processing Pipeline 2d8f1474e333b63f1c0d341fa2c0cde5 https://www.encodeproject.org/files/ENCFF895ARY/@@download/ENCFF895ARY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF941REB bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLH, ENCFF807MUK 745183936 ENCODE Processing Pipeline 2a07f5e8b903eb47330d49050c4dc338 https://www.encodeproject.org/files/ENCFF941REB/@@download/ENCFF941REB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF406DOL bam alignments ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLJ, ENCFF807MUK 1086570684 ENCODE Processing Pipeline e1691b420679aff919a0f1e4b06a669a https://www.encodeproject.org/files/ENCFF406DOL/@@download/ENCFF406DOL.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF895FUF bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF945VNK 1066881075 ENCODE Processing Pipeline 8f5ab628afa3820e36b55776ec3ed063 https://www.encodeproject.org/files/ENCFF895FUF/@@download/ENCFF895FUF.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF430SMC bam alignments ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF765EAP, ENCFF807MUK 1408379496 ENCODE Processing Pipeline 2f4cf0cf5bb6a1b6c333948e8edc3b5f https://www.encodeproject.org/files/ENCFF430SMC/@@download/ENCFF430SMC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF688UQF bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 50 ENCFF145XWH, ENCFF807MUK 870950465 ENCODE Processing Pipeline 5d5bfe40daf05eaf1150cd1e03e6db20 https://www.encodeproject.org/files/ENCFF688UQF/@@download/ENCFF688UQF.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF361KFD bam alignments ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 50 ENCFF807MUK, ENCFF976LPV 1553484646 ENCODE Processing Pipeline 9730f0150ab658d9495a8477c5e3e907 https://www.encodeproject.org/files/ENCFF361KFD/@@download/ENCFF361KFD.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF277XXK bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 50 ENCFF556LOK, ENCFF807MUK 985916483 ENCODE Processing Pipeline 17b791e2e9372cd6ceecf06865ef4f11 https://www.encodeproject.org/files/ENCFF277XXK/@@download/ENCFF277XXK.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF496KXN bam alignments ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 50 ENCFF446UUV, ENCFF807MUK 1018521249 ENCODE Processing Pipeline 76bd268c0c19886a9c33629981e4bf00 https://www.encodeproject.org/files/ENCFF496KXN/@@download/ENCFF496KXN.bam hg19 released antibody characterized with exemption, mixed read lengths ENCFF710HBZ bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF267LVE, ENCFF452EKB, ENCFF807MUK 3010702501 ENCODE Processing Pipeline e842f51951e7682b75311d8b45158da2 https://www.encodeproject.org/files/ENCFF710HBZ/@@download/ENCFF710HBZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF527XUH bam alignments ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF404ITD, ENCFF792VBK, ENCFF807MUK 3948130198 ENCODE Processing Pipeline 6f4b50045274020c42e9d1b7fdb6ce17 https://www.encodeproject.org/files/ENCFF527XUH/@@download/ENCFF527XUH.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF644OEB bam alignments ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF541ASV, ENCFF760NIU, ENCFF807MUK 2815045291 ENCODE Processing Pipeline a245b6e47498e598f018c3f6e0bb099e https://www.encodeproject.org/files/ENCFF644OEB/@@download/ENCFF644OEB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF537OFY bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 100 ENCFF024XVW, ENCFF097JJW, ENCFF807MUK 5351927440 ENCODE Processing Pipeline 5d28ee22aa5310034c85aadabbb4c80e https://www.encodeproject.org/files/ENCFF537OFY/@@download/ENCFF537OFY.bam hg19 released mild to moderate bottlenecking ENCFF017WNE bam alignments ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 100 ENCFF478YYA, ENCFF674QTV, ENCFF807MUK 5165022473 ENCODE Processing Pipeline e6f228c7ad99e5978bb1efae36f5413e https://www.encodeproject.org/files/ENCFF017WNE/@@download/ENCFF017WNE.bam hg19 released mild to moderate bottlenecking ENCFF956MXT bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF807MUK, ENCFF865UHF, ENCFF990FFM 2813146266 ENCODE Processing Pipeline 1b7d4c52d5ce1c2d548c94b24d59f5bd https://www.encodeproject.org/files/ENCFF956MXT/@@download/ENCFF956MXT.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF134DGA bam alignments ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF548SNS, ENCFF807MUK, ENCFF898MPN 4551397097 ENCODE Processing Pipeline 02aa5f53455f82dbf7eb66aaf638eb00 https://www.encodeproject.org/files/ENCFF134DGA/@@download/ENCFF134DGA.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF946PVY bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF032ITP, ENCFF615YKQ, ENCFF807MUK 3630942149 ENCODE Processing Pipeline e17f0c513e3f394e13e0018ee93eee58 https://www.encodeproject.org/files/ENCFF946PVY/@@download/ENCFF946PVY.bam hg19 released borderline replicate concordance ENCFF494TFN bam alignments ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF101BKK, ENCFF337GLH, ENCFF807MUK 3706133502 ENCODE Processing Pipeline 90e4ffe550e7c6e95907b938e3f36212 https://www.encodeproject.org/files/ENCFF494TFN/@@download/ENCFF494TFN.bam hg19 released borderline replicate concordance ENCFF498ZBS bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF708HJS, ENCFF807MUK, ENCFF999SJJ 4711400523 ENCODE Processing Pipeline 9d346b6b3bd33bad2d58a082e9dcd40d https://www.encodeproject.org/files/ENCFF498ZBS/@@download/ENCFF498ZBS.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF074HXU bam alignments ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF419HBK, ENCFF807MUK, ENCFF990OIS 5142018005 ENCODE Processing Pipeline 19d9c3307100892493b262483d4a1572 https://www.encodeproject.org/files/ENCFF074HXU/@@download/ENCFF074HXU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF073XZO bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF383GMF, ENCFF441GEH, ENCFF807MUK 3831769480 ENCODE Processing Pipeline b6999d7a7f1325c15799c19ed8f534a5 https://www.encodeproject.org/files/ENCFF073XZO/@@download/ENCFF073XZO.bam hg19 released low read depth ENCFF135OYM bam alignments ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF097VAH, ENCFF795LQA, ENCFF807MUK 3006991865 ENCODE Processing Pipeline 07c6a4530d68b7c42e369b8ee32a46a1 https://www.encodeproject.org/files/ENCFF135OYM/@@download/ENCFF135OYM.bam hg19 released low read depth ENCFF990EXV bam alignments ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF807MUK, ENCFF838NDW, ENCFF966BYU 3818833666 ENCODE Processing Pipeline b509fbf0f5bb3e937de052d3153c4240 https://www.encodeproject.org/files/ENCFF990EXV/@@download/ENCFF990EXV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF170OKS bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 50 ENCFF193ROJ, ENCFF807MUK 981766307 ENCODE Processing Pipeline 385cc7c1135d98edc161dce0c455042b https://www.encodeproject.org/files/ENCFF170OKS/@@download/ENCFF170OKS.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF764QOG bam alignments ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 50 ENCFF163SRP, ENCFF807MUK 1243310762 ENCODE Processing Pipeline 0d4dc63dcbc55967421626a20ce73cad https://www.encodeproject.org/files/ENCFF764QOG/@@download/ENCFF764QOG.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF812EKJ bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF856RPX 1144031334 ENCODE Processing Pipeline 21f2d6e3b3f3a3a20da57b8f92b3010f https://www.encodeproject.org/files/ENCFF812EKJ/@@download/ENCFF812EKJ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF137QSY bam alignments ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF873VOO 1726725738 ENCODE Processing Pipeline 7c4bfc79be62aed5b5906e1e04b2551b https://www.encodeproject.org/files/ENCFF137QSY/@@download/ENCFF137QSY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF905KCK bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF674UHN, ENCFF807MUK 1284669788 ENCODE Processing Pipeline c406b7ba96b53cdf159857d6287b40a8 https://www.encodeproject.org/files/ENCFF905KCK/@@download/ENCFF905KCK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF913QFK bam alignments ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF887ZSW 1605012320 ENCODE Processing Pipeline 4f19ba6c0557a4b9e7d0e39aa6b8700d https://www.encodeproject.org/files/ENCFF913QFK/@@download/ENCFF913QFK.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF195GBJ bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQL, ENCFF807MUK 846303741 ENCODE Processing Pipeline e515b890df1ae3ff99966e3577f4e189 https://www.encodeproject.org/files/ENCFF195GBJ/@@download/ENCFF195GBJ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF752RXF bam alignments ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQI, ENCFF807MUK 930808537 ENCODE Processing Pipeline e460e0aaf6ea53ed1102fcf6a00cb4f4 https://www.encodeproject.org/files/ENCFF752RXF/@@download/ENCFF752RXF.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF539DZV bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF320DMI, ENCFF807MUK 1175921518 ENCODE Processing Pipeline a6fb7e72e7f35bc145f673b0c5ab6e2d https://www.encodeproject.org/files/ENCFF539DZV/@@download/ENCFF539DZV.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF934ZXS bam alignments ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF308NXH, ENCFF807MUK 1307374240 ENCODE Processing Pipeline c622aaa1121734ca56c495b5ce0de3c7 https://www.encodeproject.org/files/ENCFF934ZXS/@@download/ENCFF934ZXS.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF889BVE bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 100 ENCFF025FSC, ENCFF368UTN, ENCFF807MUK 3578347291 ENCODE Processing Pipeline 2ee2af2989e2607dba93c20650452757 https://www.encodeproject.org/files/ENCFF889BVE/@@download/ENCFF889BVE.bam hg19 released low read depth ENCFF361VCB bam alignments ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 100 ENCFF807MUK, ENCFF846BUV, ENCFF959OBE 3535257082 ENCODE Processing Pipeline 906aa223b2e605e0fc576b1df4d616bb https://www.encodeproject.org/files/ENCFF361VCB/@@download/ENCFF361VCB.bam hg19 released low read depth ENCFF576JOB bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF452YKY, ENCFF807MUK, ENCFF833EAO 4625809239 ENCODE Processing Pipeline 2e08e8b5eb91abb85f09d0e6f97a8b27 https://www.encodeproject.org/files/ENCFF576JOB/@@download/ENCFF576JOB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF395KST bam alignments ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF696QAK, ENCFF807MUK, ENCFF827LCX 5784087469 ENCODE Processing Pipeline 42f500d35f08b324c0a62412d080a120 https://www.encodeproject.org/files/ENCFF395KST/@@download/ENCFF395KST.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF725LQV bam alignments ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 100 ENCFF724TVK, ENCFF807MUK, ENCFF835LIJ 3886754462 ENCODE Processing Pipeline 7b84e280c41e7b522c7d2208b7bf9f36 https://www.encodeproject.org/files/ENCFF725LQV/@@download/ENCFF725LQV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000QLP bam alignments ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMC 873738343 Richard Myers, HAIB 870c44acc9325d793f38fa13df80b7c8 https://www.encodeproject.org/files/ENCFF000QLP/@@download/ENCFF000QLP.bam hg19 released biological replicates with identical biosample ENCFF000QLS bam alignments ENCSR000BUX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMF 2095251554 Richard Myers, HAIB 50406d0a538013cdd9f1b8c04360e304 https://www.encodeproject.org/files/ENCFF000QLS/@@download/ENCFF000QLS.bam hg19 released biological replicates with identical biosample ENCFF516LSB bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 100 ENCFF119KHM, ENCFF776KZU, ENCFF807MUK 5537027386 ENCODE Processing Pipeline c61e780d67bf0816c017c25aa567995e https://www.encodeproject.org/files/ENCFF516LSB/@@download/ENCFF516LSB.bam hg19 released ENCFF445SJA bam alignments ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 100 ENCFF161HBP, ENCFF807MUK, ENCFF833EZX 6058609803 ENCODE Processing Pipeline 360f721b16701dd7b46f4d30cf481341 https://www.encodeproject.org/files/ENCFF445SJA/@@download/ENCFF445SJA.bam hg19 released ENCFF204LRJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF060AFD, ENCFF099MWU, ENCFF807MUK 3635858853 ENCODE Processing Pipeline cb6e06a4ebc4439e9862a9ce8bcb1996 https://www.encodeproject.org/files/ENCFF204LRJ/@@download/ENCFF204LRJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF758USJ bam alignments ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF276DXN, ENCFF659XQW, ENCFF807MUK 4438992666 ENCODE Processing Pipeline 28418194534cc920e241c9c779f876fa https://www.encodeproject.org/files/ENCFF758USJ/@@download/ENCFF758USJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF717XED bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 100 ENCFF700CIV, ENCFF807MUK, ENCFF872XVD 3065959793 ENCODE Processing Pipeline c1cb3184267ecca58f0fef7027aed2e8 https://www.encodeproject.org/files/ENCFF717XED/@@download/ENCFF717XED.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF643WDX bam alignments ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 100 ENCFF373VRZ, ENCFF539YNG, ENCFF807MUK 4180295807 ENCODE Processing Pipeline ec27df3ac2919b7cfacc40b384376bc1 https://www.encodeproject.org/files/ENCFF643WDX/@@download/ENCFF643WDX.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF391CGQ bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 50 ENCFF644JIO, ENCFF807MUK 975414658 ENCODE Processing Pipeline ed8f8fc0178028b2ef565a769a1f6f25 https://www.encodeproject.org/files/ENCFF391CGQ/@@download/ENCFF391CGQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF892CVA bam alignments ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 50 ENCFF515YST, ENCFF807MUK 1202776767 ENCODE Processing Pipeline eedbe083eb9d66ae986e0c249c31b829 https://www.encodeproject.org/files/ENCFF892CVA/@@download/ENCFF892CVA.bam hg19 released low read depth, antibody characterized with exemption ENCFF338GMK bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF518CED, ENCFF807MUK 684872555 ENCODE Processing Pipeline a2d263ddf4d290c719cfae6c0528d54e https://www.encodeproject.org/files/ENCFF338GMK/@@download/ENCFF338GMK.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF656RDN bam alignments ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF807MUK, ENCFF843ZPR 731590680 ENCODE Processing Pipeline d20a0c1a54d4abb2a629e811aab855db https://www.encodeproject.org/files/ENCFF656RDN/@@download/ENCFF656RDN.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF612OEV bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF226RVI, ENCFF657HVC, ENCFF807MUK 2229989443 ENCODE Processing Pipeline 1a8fc0297f472f18b4e34fdb6c54afef https://www.encodeproject.org/files/ENCFF612OEV/@@download/ENCFF612OEV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF248TDS bam alignments ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF576NTQ, ENCFF686CXJ, ENCFF807MUK 4431718464 ENCODE Processing Pipeline 0354240942e9476db91f6d0873a088e2 https://www.encodeproject.org/files/ENCFF248TDS/@@download/ENCFF248TDS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF107DVQ bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF494KWC, ENCFF807MUK, ENCFF826QKF 959918153 ENCODE Processing Pipeline 598545f9ea0cc5eb9c2a3b149ed4a013 https://www.encodeproject.org/files/ENCFF107DVQ/@@download/ENCFF107DVQ.bam hg19 released control low read depth, missing genetic modification characterization ENCFF121MMO bam alignments ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF197WLE, ENCFF320OTV, ENCFF807MUK 1097225865 ENCODE Processing Pipeline c7218d78fffe1a45482059cf566987b5 https://www.encodeproject.org/files/ENCFF121MMO/@@download/ENCFF121MMO.bam hg19 released control low read depth, missing genetic modification characterization ENCFF229FNO bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 76 ENCFF372LTI, ENCFF807MUK 1373618882 ENCODE Processing Pipeline 2aef3b9eee4c65c9cfa4753aa0e35a6a https://www.encodeproject.org/files/ENCFF229FNO/@@download/ENCFF229FNO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF054DOO bam alignments ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 76 ENCFF061MRR, ENCFF807MUK 1095074823 ENCODE Processing Pipeline 8ff6d6a837219c3a152fa0c0b3c5f6a6 https://www.encodeproject.org/files/ENCFF054DOO/@@download/ENCFF054DOO.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF383BUZ bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 76 ENCFF781KGN, ENCFF807MUK 2384970860 ENCODE Processing Pipeline 207afc9cc4d30b0a66f317e65f4fea93 https://www.encodeproject.org/files/ENCFF383BUZ/@@download/ENCFF383BUZ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF644EWQ bam alignments ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 76 ENCFF681GXU, ENCFF807MUK 1564950061 ENCODE Processing Pipeline 685632d2a1a716ae47a60f29710b5b19 https://www.encodeproject.org/files/ENCFF644EWQ/@@download/ENCFF644EWQ.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF713QBG bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF665CXV, ENCFF807MUK 1222977489 ENCODE Processing Pipeline 1ed304cc9bb022d8da175d84b3c11410 https://www.encodeproject.org/files/ENCFF713QBG/@@download/ENCFF713QBG.bam hg19 released low read depth, antibody characterized with exemption ENCFF493UYW bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF807MUK, ENCFF946BAN 932941826 ENCODE Processing Pipeline 4f0f23e754489417db9b990291d358eb https://www.encodeproject.org/files/ENCFF493UYW/@@download/ENCFF493UYW.bam hg19 released low read depth, antibody characterized with exemption ENCFF476EGJ bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF665CXV, ENCFF807MUK 1222977518 ENCODE Processing Pipeline c808f5e505d29c48bc3e06918611ee38 https://www.encodeproject.org/files/ENCFF476EGJ/@@download/ENCFF476EGJ.bam hg19 released low read depth, antibody characterized with exemption ENCFF798GLN bam alignments ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF807MUK, ENCFF946BAN 932941854 ENCODE Processing Pipeline e04c78fc03112d729e56b6067dd5c447 https://www.encodeproject.org/files/ENCFF798GLN/@@download/ENCFF798GLN.bam hg19 released low read depth, antibody characterized with exemption ENCFF592SCF bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF605BFZ, ENCFF807MUK, ENCFF824PVS 2988134672 ENCODE Processing Pipeline fefe3bf0477b729c6c09b81902c9d13c https://www.encodeproject.org/files/ENCFF592SCF/@@download/ENCFF592SCF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF574VVE bam alignments ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF377PHH, ENCFF510HXD, ENCFF807MUK 4824173505 ENCODE Processing Pipeline ef014e0af42b5708ec9d8245a82724da https://www.encodeproject.org/files/ENCFF574VVE/@@download/ENCFF574VVE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF697MUV bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 50 ENCFF632EVH, ENCFF807MUK 944710007 ENCODE Processing Pipeline 5c982e98a27b3ad0d4780086a8bca65b https://www.encodeproject.org/files/ENCFF697MUV/@@download/ENCFF697MUV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF687NJZ bam alignments ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 50 ENCFF778YOV, ENCFF807MUK 891430692 ENCODE Processing Pipeline 53b1ad257fe94fd185e7dc8f883ca17f https://www.encodeproject.org/files/ENCFF687NJZ/@@download/ENCFF687NJZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF122EVJ bam alignments ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF716BNN, ENCFF807MUK, ENCFF892KYV 3382490138 ENCODE Processing Pipeline 195facb12cad8d62d358c7dd38a1a954 https://www.encodeproject.org/files/ENCFF122EVJ/@@download/ENCFF122EVJ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF076YOL bam alignments ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF482HKO, ENCFF783OVZ, ENCFF807MUK 2594615847 ENCODE Processing Pipeline 13ef9823617cf20414d191359d0cc0ea https://www.encodeproject.org/files/ENCFF076YOL/@@download/ENCFF076YOL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF695AWN bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF074ALH, ENCFF807MUK, ENCFF916WNU 3896476102 ENCODE Processing Pipeline 0222703e999f0e711d42db355fd56978 https://www.encodeproject.org/files/ENCFF695AWN/@@download/ENCFF695AWN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF908CYV bam alignments ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF213XIX, ENCFF277HDI, ENCFF807MUK 4632685851 ENCODE Processing Pipeline f98404dab4fdebbb2979e34a17b07838 https://www.encodeproject.org/files/ENCFF908CYV/@@download/ENCFF908CYV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF502XOF bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF133HXA, ENCFF791JGC, ENCFF807MUK 4057304317 ENCODE Processing Pipeline 2cc4ad6afeef1c1d75631de4dcc00546 https://www.encodeproject.org/files/ENCFF502XOF/@@download/ENCFF502XOF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF431JBK bam alignments ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF659EDD, ENCFF807MUK, ENCFF899BUS 4121832886 ENCODE Processing Pipeline 74444369aa7eed78689f28a7df8281be https://www.encodeproject.org/files/ENCFF431JBK/@@download/ENCFF431JBK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF998NVU bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF085MHP, ENCFF807MUK 1433233502 ENCODE Processing Pipeline d7eb40bff0e41083a0dc7e4bedb78918 https://www.encodeproject.org/files/ENCFF998NVU/@@download/ENCFF998NVU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF784VQV bam alignments ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF851FHG 1574628033 ENCODE Processing Pipeline 7b2bddf087ff5f8a296a99d60a1d76ff https://www.encodeproject.org/files/ENCFF784VQV/@@download/ENCFF784VQV.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF889JSZ bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF100SGJ, ENCFF807MUK 1270080293 ENCODE Processing Pipeline b7ba1221d69865414ce4d8a84e7e6993 https://www.encodeproject.org/files/ENCFF889JSZ/@@download/ENCFF889JSZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF193ALV bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF807MUK, ENCFF821MJN 935800845 ENCODE Processing Pipeline b6d267b7a4d3cc10a23cda6eb91cecc0 https://www.encodeproject.org/files/ENCFF193ALV/@@download/ENCFF193ALV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF709WYV bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 50 ENCFF807MUK, ENCFF821MJN 935800873 ENCODE Processing Pipeline bfbe82c03beea28731796ebbef77ea27 https://www.encodeproject.org/files/ENCFF709WYV/@@download/ENCFF709WYV.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF095BVD bam alignments ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 50 ENCFF100SGJ, ENCFF807MUK 1270080323 ENCODE Processing Pipeline d942c8de90f3447fa116ba07c8071eaa https://www.encodeproject.org/files/ENCFF095BVD/@@download/ENCFF095BVD.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF116QLL bam alignments ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF299MXH, ENCFF668XNA, ENCFF807MUK 4916883956 ENCODE Processing Pipeline 12f3ea9e4b40e5a7fbf3efb41e1cadee https://www.encodeproject.org/files/ENCFF116QLL/@@download/ENCFF116QLL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF257LFE bam alignments ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF283GGY, ENCFF807MUK, ENCFF943IGO 2651755399 ENCODE Processing Pipeline f4a140f62e0acd9c75548bf48f26be63 https://www.encodeproject.org/files/ENCFF257LFE/@@download/ENCFF257LFE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF828ZWQ bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017DPB, ENCFF659OJS, ENCFF807MUK 4225644077 ENCODE Processing Pipeline 3bd8ffc3c3486372ec6da00d3a1f7cfd https://www.encodeproject.org/files/ENCFF828ZWQ/@@download/ENCFF828ZWQ.bam hg19 released mild to moderate bottlenecking ENCFF247RDS bam alignments ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF058YFW, ENCFF416SAW, ENCFF807MUK 4770694931 ENCODE Processing Pipeline 2b7a62c960809ac1b30c35b37417d62f https://www.encodeproject.org/files/ENCFF247RDS/@@download/ENCFF247RDS.bam hg19 released mild to moderate bottlenecking ENCFF540TEB bam alignments ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF807MUK, ENCFF836HTT, ENCFF956IEA 3945092638 ENCODE Processing Pipeline 823d7b1ef64b7d99c98c980b6e5e964b https://www.encodeproject.org/files/ENCFF540TEB/@@download/ENCFF540TEB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF477OJL bam alignments ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF271TKP, ENCFF312JMJ, ENCFF807MUK 3505224849 ENCODE Processing Pipeline 0ecb83ac3845affa1d26228e2ae579bb https://www.encodeproject.org/files/ENCFF477OJL/@@download/ENCFF477OJL.bam hg19 released antibody characterized with exemption missing control alignments ENCFF418BQZ bam alignments ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF742HCJ, ENCFF807MUK, ENCFF813LLQ 2996077988 ENCODE Processing Pipeline 6a0d77aebc8da2607a36c7c515fb0902 https://www.encodeproject.org/files/ENCFF418BQZ/@@download/ENCFF418BQZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF247QPH bam alignments ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF481CKZ, ENCFF807MUK, ENCFF817NUS 5220567387 ENCODE Processing Pipeline a13d8fe02599f0032c381dd76b3c75f7 https://www.encodeproject.org/files/ENCFF247QPH/@@download/ENCFF247QPH.bam hg19 released antibody characterized with exemption missing control alignments ENCFF999VBZ bam alignments ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 76 ENCFF426SGY, ENCFF793WCO, ENCFF807MUK 1249960372 ENCODE Processing Pipeline e0a6bb007703519c39f3b40fb4477403 https://www.encodeproject.org/files/ENCFF999VBZ/@@download/ENCFF999VBZ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF465AXY bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 50 ENCFF656IHM, ENCFF807MUK 832335548 ENCODE Processing Pipeline 4a80bc8b5ff02918eef6715d0970af03 https://www.encodeproject.org/files/ENCFF465AXY/@@download/ENCFF465AXY.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF919JRJ bam alignments ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 50 ENCFF296DPR, ENCFF807MUK 1084252405 ENCODE Processing Pipeline b481c04cfdc847ced9ee0a7c8d9a660f https://www.encodeproject.org/files/ENCFF919JRJ/@@download/ENCFF919JRJ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF822QTV bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF112QGY, ENCFF659TEJ, ENCFF807MUK 5822243644 ENCODE Processing Pipeline 3d370aea471b7c9c6e446469c11fffd4 https://www.encodeproject.org/files/ENCFF822QTV/@@download/ENCFF822QTV.bam hg19 released antibody characterized with exemption ENCFF449XWV bam alignments ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF611YHU, ENCFF681FMI, ENCFF807MUK 6031529323 ENCODE Processing Pipeline 20fda19a6fa05dcfc41e0b184fac76fa https://www.encodeproject.org/files/ENCFF449XWV/@@download/ENCFF449XWV.bam hg19 released antibody characterized with exemption ENCFF237AJA bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 76 ENCFF264ZXH, ENCFF807MUK 1785274481 ENCODE Processing Pipeline 4dc55f67d92abac8d0ee133e18b8fdd1 https://www.encodeproject.org/files/ENCFF237AJA/@@download/ENCFF237AJA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF836CXT bam alignments ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 76 ENCFF380TFO, ENCFF807MUK 2206022316 ENCODE Processing Pipeline c3f768626a4152e7e6d1113a5edb2be6 https://www.encodeproject.org/files/ENCFF836CXT/@@download/ENCFF836CXT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF676XEB bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 100 ENCFF069VNL, ENCFF081USS, ENCFF807MUK 3466917795 ENCODE Processing Pipeline 7530e3493612f61ed9124341fb8d4702 https://www.encodeproject.org/files/ENCFF676XEB/@@download/ENCFF676XEB.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258YDE bam alignments ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 100 ENCFF565KLI, ENCFF682IGK, ENCFF807MUK 4213726636 ENCODE Processing Pipeline e88dc849eb900bdefec4cfecf711cf13 https://www.encodeproject.org/files/ENCFF258YDE/@@download/ENCFF258YDE.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF827MXQ bam alignments ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF406IUD, ENCFF407EQP, ENCFF807MUK 2732731195 ENCODE Processing Pipeline ee1b3bd60c4f5a764b6426fb5737b1a5 https://www.encodeproject.org/files/ENCFF827MXQ/@@download/ENCFF827MXQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF054XTB bam alignments ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF107NVA, ENCFF168ACZ, ENCFF807MUK 4962255454 ENCODE Processing Pipeline 9e05964d35b18b88deaa6ebb19ea00c0 https://www.encodeproject.org/files/ENCFF054XTB/@@download/ENCFF054XTB.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF387LUX bam alignments ENCSR066GBX ChIP-seq UBERON:0006631 right atrium auricular region tissue Homo sapiens CTCF-human DNA False 2017-02-10 ENCODE 1 100 ENCFF367GUA, ENCFF560UPE, ENCFF807MUK 2496996904 ENCODE Processing Pipeline 4f9f1fb8c28d3db158642ba263f50885 https://www.encodeproject.org/files/ENCFF387LUX/@@download/ENCFF387LUX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption mismatched file status, experiment not submitted to GEO severe bottlenecking ENCFF489YYE bam alignments ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF190IBB, ENCFF807MUK, ENCFF856IQE 2844724386 ENCODE Processing Pipeline 7b44d353489e3ab050c9b632030bbc59 https://www.encodeproject.org/files/ENCFF489YYE/@@download/ENCFF489YYE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF809ZWP bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF145UNV, ENCFF226BLN, ENCFF807MUK 4776633600 ENCODE Processing Pipeline 05bd05afe160742c9618c97007bc1f6a https://www.encodeproject.org/files/ENCFF809ZWP/@@download/ENCFF809ZWP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF130BYF bam alignments ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF198ANZ, ENCFF256EWC, ENCFF807MUK 4785846416 ENCODE Processing Pipeline f5f6e46f9e0bad9145da18d1bcb5ed76 https://www.encodeproject.org/files/ENCFF130BYF/@@download/ENCFF130BYF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF207HQD bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 100 ENCFF223BRR, ENCFF807MUK, ENCFF839NSQ 3646007174 ENCODE Processing Pipeline 19bfd74c7f090db1c0c727af95631130 https://www.encodeproject.org/files/ENCFF207HQD/@@download/ENCFF207HQD.bam hg19 released antibody characterized with exemption ENCFF153FSJ bam alignments ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 100 ENCFF796XXQ, ENCFF807MUK, ENCFF920GKJ 4522759436 ENCODE Processing Pipeline 5ca27eed13dc3a23c32b0d17a8f36e0f https://www.encodeproject.org/files/ENCFF153FSJ/@@download/ENCFF153FSJ.bam hg19 released antibody characterized with exemption ENCFF499RKL bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 50 ENCFF807MUK, ENCFF986KEK 768291996 ENCODE Processing Pipeline 9eea22e166c4f62a715792b3c8541cc1 https://www.encodeproject.org/files/ENCFF499RKL/@@download/ENCFF499RKL.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF799EWO bam alignments ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 50 ENCFF647APA, ENCFF807MUK 973545963 ENCODE Processing Pipeline 39bff94f1e98f8614f9b413a8a8846fe https://www.encodeproject.org/files/ENCFF799EWO/@@download/ENCFF799EWO.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF894WCT bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF575PJE, ENCFF786REQ, ENCFF807MUK 4748384343 ENCODE Processing Pipeline 1f2c3b6ada538f77531058b6b035cb79 https://www.encodeproject.org/files/ENCFF894WCT/@@download/ENCFF894WCT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF559RLP bam alignments ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF696VRU, ENCFF807MUK, ENCFF919JNL 4293304021 ENCODE Processing Pipeline c0652bb3e60e6af7855d9a3d50fb21f0 https://www.encodeproject.org/files/ENCFF559RLP/@@download/ENCFF559RLP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF452QYJ bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 100 ENCFF197EBM, ENCFF277SWU, ENCFF807MUK 3816720304 ENCODE Processing Pipeline b2435fb86932560dce524e162a73b8f3 https://www.encodeproject.org/files/ENCFF452QYJ/@@download/ENCFF452QYJ.bam hg19 released ENCFF474PWT bam alignments ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 100 ENCFF358LFL, ENCFF575GFV, ENCFF807MUK 4732813602 ENCODE Processing Pipeline 332c532dda2f524a2176115778fbf574 https://www.encodeproject.org/files/ENCFF474PWT/@@download/ENCFF474PWT.bam hg19 released ENCFF531FEB bam alignments ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF271MIC, ENCFF604MZQ, ENCFF807MUK 3155389925 ENCODE Processing Pipeline 72effb3689afbbca5dc8a25dcad6ebba https://www.encodeproject.org/files/ENCFF531FEB/@@download/ENCFF531FEB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF825DAK bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF274EIR, ENCFF807MUK, ENCFF951FWS 4254063016 ENCODE Processing Pipeline ea52a4adab5c4fe86653ef76fca07023 https://www.encodeproject.org/files/ENCFF825DAK/@@download/ENCFF825DAK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF891FAJ bam alignments ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF546RYU, ENCFF807MUK, ENCFF881ACQ 4047761506 ENCODE Processing Pipeline cf6fc4f384b705e4bf0b531b6f39143b https://www.encodeproject.org/files/ENCFF891FAJ/@@download/ENCFF891FAJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF183PSA bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 100 ENCFF380XLB, ENCFF611GML, ENCFF807MUK 4155775253 ENCODE Processing Pipeline 3d0b5098dd2c38e0622185a9ea36e0cb https://www.encodeproject.org/files/ENCFF183PSA/@@download/ENCFF183PSA.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF206LXZ bam alignments ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 100 ENCFF807MUK, ENCFF965IPJ, ENCFF967WPN 4451130063 ENCODE Processing Pipeline 90e491013c28d1efbec7f37b1fe82f64 https://www.encodeproject.org/files/ENCFF206LXZ/@@download/ENCFF206LXZ.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF577BMV bam alignments ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF024GRH, ENCFF542ZSP, ENCFF807MUK 3840490434 ENCODE Processing Pipeline 4d50898f31b7e001508623fde78b482d https://www.encodeproject.org/files/ENCFF577BMV/@@download/ENCFF577BMV.bam hg19 released antibody characterized with exemption ENCFF242CDB bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 50 ENCFF566LFO, ENCFF807MUK 667611071 ENCODE Processing Pipeline e150a9948ff9b653a31d14031c098d3b https://www.encodeproject.org/files/ENCFF242CDB/@@download/ENCFF242CDB.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF380SLU bam alignments ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 50 ENCFF769AJC, ENCFF807MUK 756470225 ENCODE Processing Pipeline 4d5c6d56c6004849c5f5a75efc02fe86 https://www.encodeproject.org/files/ENCFF380SLU/@@download/ENCFF380SLU.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF713HHQ bam alignments ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF497NCC, ENCFF538ODU, ENCFF807MUK 5709270094 ENCODE Processing Pipeline df467380409f313b02b69f865140829f https://www.encodeproject.org/files/ENCFF713HHQ/@@download/ENCFF713HHQ.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF536FQU bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF059MRY, ENCFF291IKU, ENCFF807MUK 3318296716 ENCODE Processing Pipeline 5f8bfd59a2010a37b5f06e7f3e1c2e1e https://www.encodeproject.org/files/ENCFF536FQU/@@download/ENCFF536FQU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF514ADB bam alignments ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF047YUA, ENCFF278JAX, ENCFF335VLV, ENCFF645FSY, ENCFF807MUK 8429669804 ENCODE Processing Pipeline 10433cf71ae14d312a8c393d02f4e85d https://www.encodeproject.org/files/ENCFF514ADB/@@download/ENCFF514ADB.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF700FUA bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 100 ENCFF570QCN, ENCFF591FAA, ENCFF807MUK 2199500520 ENCODE Processing Pipeline d6df4f60b00a578dc30a571490c6b9d6 https://www.encodeproject.org/files/ENCFF700FUA/@@download/ENCFF700FUA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF189FPT bam alignments ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 100 ENCFF329ODS, ENCFF765DMW, ENCFF807MUK 8462435837 ENCODE Processing Pipeline b14302965f8865da144d3778bfcc2ece https://www.encodeproject.org/files/ENCFF189FPT/@@download/ENCFF189FPT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF491SHN bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF241ADB, ENCFF417KCI, ENCFF807MUK 3204494593 ENCODE Processing Pipeline 9dfc9b0a8c4ebbb283ddbad1827a07ca https://www.encodeproject.org/files/ENCFF491SHN/@@download/ENCFF491SHN.bam hg19 released low read depth ENCFF252BMK bam alignments ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF253UMC, ENCFF807MUK, ENCFF979ZZF 3535728206 ENCODE Processing Pipeline f7ff08cbac609058ca20d48d99ffc643 https://www.encodeproject.org/files/ENCFF252BMK/@@download/ENCFF252BMK.bam hg19 released low read depth ENCFF203FSJ bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF167GOB, ENCFF340GSU, ENCFF807MUK 3718465608 ENCODE Processing Pipeline 2e371b7e96000cf24a5f7a4d166f94f9 https://www.encodeproject.org/files/ENCFF203FSJ/@@download/ENCFF203FSJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF696YRO bam alignments ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF502MLY, ENCFF807MUK, ENCFF921RGY 4990668446 ENCODE Processing Pipeline b49483782c6b7ceec5acb4450af7326d https://www.encodeproject.org/files/ENCFF696YRO/@@download/ENCFF696YRO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF666QOX bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 100 ENCFF545PSD, ENCFF807MUK, ENCFF959SCN 3298498544 ENCODE Processing Pipeline 587537b365f05be20a0773f085dd44d2 https://www.encodeproject.org/files/ENCFF666QOX/@@download/ENCFF666QOX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF845QLW bam alignments ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 100 ENCFF272EEG, ENCFF531FHF, ENCFF807MUK 3614444905 ENCODE Processing Pipeline 1ab784b4a39eb8f071e113055d544323 https://www.encodeproject.org/files/ENCFF845QLW/@@download/ENCFF845QLW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF991XPF bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF507REW, ENCFF740JJX, ENCFF807MUK 4110916727 ENCODE Processing Pipeline e1822970535e61b2403a059b37bf29d1 https://www.encodeproject.org/files/ENCFF991XPF/@@download/ENCFF991XPF.bam hg19 released mild to moderate bottlenecking ENCFF170DKK bam alignments ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF088KVK, ENCFF576YEJ, ENCFF807MUK 5363887310 ENCODE Processing Pipeline d29facd817ea3c935ad4afb0deda34ee https://www.encodeproject.org/files/ENCFF170DKK/@@download/ENCFF170DKK.bam hg19 released mild to moderate bottlenecking ENCFF629VOX bam alignments ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF569YBX, ENCFF774ZKP, ENCFF807MUK 6585537785 ENCODE Processing Pipeline 2b49dfd04ddd71d475598af245cb6e92 https://www.encodeproject.org/files/ENCFF629VOX/@@download/ENCFF629VOX.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF358FRE bam alignments ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF024HXP, ENCFF480IZA, ENCFF807MUK 2420157576 ENCODE Processing Pipeline 0fe6bc382dc4732d837f66cf812091e6 https://www.encodeproject.org/files/ENCFF358FRE/@@download/ENCFF358FRE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF924UWH bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF239KLD, ENCFF303QKQ, ENCFF807MUK 3832658189 ENCODE Processing Pipeline 4680eedb46a71f31b4254e0f594c3401 https://www.encodeproject.org/files/ENCFF924UWH/@@download/ENCFF924UWH.bam hg19 released experiment not submitted to GEO ENCFF666SAQ bam alignments ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF807MUK, ENCFF912XOK, ENCFF933JZR 3298083030 ENCODE Processing Pipeline 5aa4aa055f5ad97ec74c6888879a2f63 https://www.encodeproject.org/files/ENCFF666SAQ/@@download/ENCFF666SAQ.bam hg19 released experiment not submitted to GEO ENCFF723ZTU bam alignments ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF258VLM, ENCFF807MUK, ENCFF836VHY 3216889576 ENCODE Processing Pipeline 44a4acad7b5f137df99cd03773efba85 https://www.encodeproject.org/files/ENCFF723ZTU/@@download/ENCFF723ZTU.bam hg19 released antibody characterized with exemption missing control alignments ENCFF899VCS bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFS, ENCFF807MUK 984850386 ENCODE Processing Pipeline 73cfaae47e2222015917d2ebb769e83c https://www.encodeproject.org/files/ENCFF899VCS/@@download/ENCFF899VCS.bam hg19 released low read depth ENCFF065DOQ bam alignments ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFT, ENCFF807MUK 1309733892 ENCODE Processing Pipeline 8592c0e7c9f1087a46d238dacff4942a https://www.encodeproject.org/files/ENCFF065DOQ/@@download/ENCFF065DOQ.bam hg19 released low read depth ENCFF016MFU bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFO, ENCFF807MUK 1268017381 ENCODE Processing Pipeline 660cb5eac8d2c75e65d927c458ba0ab6 https://www.encodeproject.org/files/ENCFF016MFU/@@download/ENCFF016MFU.bam hg19 released ENCFF986OUP bam alignments ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFP, ENCFF807MUK 1305616018 ENCODE Processing Pipeline 92955810e04dad791b7c0fb7631648e3 https://www.encodeproject.org/files/ENCFF986OUP/@@download/ENCFF986OUP.bam hg19 released ENCFF598WGZ bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 50 ENCFF697WPB, ENCFF807MUK 979001374 ENCODE Processing Pipeline 2377052fae2ee81455e9268d7b6d479b https://www.encodeproject.org/files/ENCFF598WGZ/@@download/ENCFF598WGZ.bam hg19 released borderline replicate concordance, low read depth ENCFF199MDR bam alignments ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 50 ENCFF002BFR, ENCFF807MUK 1150353182 ENCODE Processing Pipeline ad9be9055a9f79a7daae6d0491c6123a https://www.encodeproject.org/files/ENCFF199MDR/@@download/ENCFF199MDR.bam hg19 released borderline replicate concordance, low read depth ENCFF376VVJ bam alignments ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF547KHV, ENCFF807MUK, ENCFF991UEV 3536392105 ENCODE Processing Pipeline d5e78f11fb3944929df864e3d228c14f https://www.encodeproject.org/files/ENCFF376VVJ/@@download/ENCFF376VVJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF153CXX bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 76 ENCFF049ACQ, ENCFF807MUK 1686672734 ENCODE Processing Pipeline ed8c7bccae280fb41cea549c452f4d6e https://www.encodeproject.org/files/ENCFF153CXX/@@download/ENCFF153CXX.bam hg19 released control low read depth, inconsistent platforms ENCFF207FFX bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 36 ENCFF335PHG, ENCFF807MUK 891808670 ENCODE Processing Pipeline ff51664e73e6fd94b6237e238db5054f https://www.encodeproject.org/files/ENCFF207FFX/@@download/ENCFF207FFX.bam hg19 released control low read depth, inconsistent platforms ENCFF162YLU bam alignments ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 36 ENCFF049ACQ, ENCFF807MUK 950466739 ENCODE Processing Pipeline 133331581179c2cf2b4e22ce8e00db4d https://www.encodeproject.org/files/ENCFF162YLU/@@download/ENCFF162YLU.bam hg19 released control low read depth, inconsistent platforms ENCFF539VZJ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF238FNW, ENCFF693CFR, ENCFF807MUK 3792637366 ENCODE Processing Pipeline 72caaa2bf015821c1be30c35b6ac9a66 https://www.encodeproject.org/files/ENCFF539VZJ/@@download/ENCFF539VZJ.bam hg19 released ENCFF063DLZ bam alignments ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF259AYK, ENCFF693GDA, ENCFF807MUK 4155588807 ENCODE Processing Pipeline cfad64744db976ad3b90fc5772b5ab56 https://www.encodeproject.org/files/ENCFF063DLZ/@@download/ENCFF063DLZ.bam hg19 released ENCFF354AJH bam alignments ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 100 ENCFF534XBR, ENCFF807MUK, ENCFF973HMK 3838414267 ENCODE Processing Pipeline 4baec0a37f119ed658af75a93e955d5c https://www.encodeproject.org/files/ENCFF354AJH/@@download/ENCFF354AJH.bam hg19 released antibody characterized with exemption ENCFF244RSE bam alignments ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF163EIH, ENCFF807MUK, ENCFF947LDP 3277376222 ENCODE Processing Pipeline 7384fd05238a09446a769665cf1409c8 https://www.encodeproject.org/files/ENCFF244RSE/@@download/ENCFF244RSE.bam hg19 released antibody characterized with exemption ENCFF573SRY bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF972RFP 565103063 ENCODE Processing Pipeline 0064307108ebc18f812bbb43e8d2f708 https://www.encodeproject.org/files/ENCFF573SRY/@@download/ENCFF573SRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF514LUN bam alignments ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF698TRM, ENCFF807MUK 585278677 ENCODE Processing Pipeline 57be23c40c7ef7ee8de8fba986e3c9e8 https://www.encodeproject.org/files/ENCFF514LUN/@@download/ENCFF514LUN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF012IGR bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUI, ENCFF807MUK 1241523705 ENCODE Processing Pipeline d0bf75cc52f6b6a559a482c3c7ea2334 https://www.encodeproject.org/files/ENCFF012IGR/@@download/ENCFF012IGR.bam hg19 released low read depth, antibody characterized with exemption ENCFF527GGD bam alignments ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUH, ENCFF807MUK 1153861968 ENCODE Processing Pipeline 51288055255fa5fef100954b6c5f43bc https://www.encodeproject.org/files/ENCFF527GGD/@@download/ENCFF527GGD.bam hg19 released low read depth, antibody characterized with exemption ENCFF759PVZ bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF761RTS, ENCFF807MUK 449679272 ENCODE Processing Pipeline 7700bb25cfdd2c38d40baabefa534a1b https://www.encodeproject.org/files/ENCFF759PVZ/@@download/ENCFF759PVZ.bam hg19 released low read length, low read depth ENCFF958RAN bam alignments ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF970NLP 438076916 ENCODE Processing Pipeline 7a6ba8e126f82d10fda5dcd72bf8cb69 https://www.encodeproject.org/files/ENCFF958RAN/@@download/ENCFF958RAN.bam hg19 released low read length, low read depth ENCFF734MVF bam alignments ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF296JWD, ENCFF807MUK, ENCFF952JIY 1921489874 ENCODE Processing Pipeline 043d0cf5a93d5d0dee0e6866900a5557 https://www.encodeproject.org/files/ENCFF734MVF/@@download/ENCFF734MVF.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF270VTL bam alignments ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF464OZG, ENCFF807MUK, ENCFF933ONW 5543429658 ENCODE Processing Pipeline 0ce78be4848ebf38eb1b2dd92d16479d https://www.encodeproject.org/files/ENCFF270VTL/@@download/ENCFF270VTL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF392TYJ bam alignments ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF326ZSE, ENCFF751ZBO, ENCFF807MUK 3658628403 ENCODE Processing Pipeline bb29f62e762b89ff7d934b5c482b779d https://www.encodeproject.org/files/ENCFF392TYJ/@@download/ENCFF392TYJ.bam hg19 released antibody characterized with exemption missing control alignments ENCFF941RBT bam alignments ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF255INZ, ENCFF296YDQ, ENCFF807MUK 3384224074 ENCODE Processing Pipeline 81829f794741257cdc1c6bc92d96b085 https://www.encodeproject.org/files/ENCFF941RBT/@@download/ENCFF941RBT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF014NCD bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF807MUK, ENCFF817CFB, ENCFF917CWI 4202306549 ENCODE Processing Pipeline 82cda216981df347c29ca58acc29d226 https://www.encodeproject.org/files/ENCFF014NCD/@@download/ENCFF014NCD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF212MCV bam alignments ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF061OTP, ENCFF151NBC, ENCFF807MUK 5298424246 ENCODE Processing Pipeline 282a01ce98df1558767e1548d3e0dd78 https://www.encodeproject.org/files/ENCFF212MCV/@@download/ENCFF212MCV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF042NBZ bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF047GWH, ENCFF609XEG, ENCFF807MUK 3019481770 ENCODE Processing Pipeline ca5c4bfa30561a6d71a9424b3460d308 https://www.encodeproject.org/files/ENCFF042NBZ/@@download/ENCFF042NBZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF646UDC bam alignments ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF600VBR, ENCFF734WRA, ENCFF807MUK 3230058249 ENCODE Processing Pipeline 0bab36797bc1fe89d38f819cae6e7dea https://www.encodeproject.org/files/ENCFF646UDC/@@download/ENCFF646UDC.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF531GWB bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF107YXM, ENCFF637JXP, ENCFF807MUK 3936369430 ENCODE Processing Pipeline 0f15c2130c146e0393ce1c49081c3cc6 https://www.encodeproject.org/files/ENCFF531GWB/@@download/ENCFF531GWB.bam hg19 released borderline replicate concordance ENCFF139OUQ bam alignments ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF466FAG, ENCFF807MUK, ENCFF985OFU 4418562283 ENCODE Processing Pipeline 011d7569f7da83735fda2c86f376ca03 https://www.encodeproject.org/files/ENCFF139OUQ/@@download/ENCFF139OUQ.bam hg19 released borderline replicate concordance ENCFF234PLD bam alignments ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF119QES, ENCFF807MUK, ENCFF823BPQ 3146191377 ENCODE Processing Pipeline e79a599400a622d7d7376b15ce1df81b https://www.encodeproject.org/files/ENCFF234PLD/@@download/ENCFF234PLD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF459EXC bam alignments ENCSR146BGM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF014FJF, ENCFF351KDO, ENCFF467JYT, ENCFF655EPI, ENCFF807MUK 4569259174 ENCODE Processing Pipeline c332c83d175d5d97c82a89465e4a6b77 https://www.encodeproject.org/files/ENCFF459EXC/@@download/ENCFF459EXC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF065JBC bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF215OIS, ENCFF807MUK 433443269 ENCODE Processing Pipeline fa5955ec2f4d30092dd172f15d78158c https://www.encodeproject.org/files/ENCFF065JBC/@@download/ENCFF065JBC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF128DCK bam alignments ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF807MUK, ENCFF816NNH 508942613 ENCODE Processing Pipeline c579df0fa149cd51193ed4c7d53685f8 https://www.encodeproject.org/files/ENCFF128DCK/@@download/ENCFF128DCK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF293FTN bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF300IMG, ENCFF334HNS, ENCFF807MUK 4146751739 ENCODE Processing Pipeline ec5343d7f8308e16629172cc52e89603 https://www.encodeproject.org/files/ENCFF293FTN/@@download/ENCFF293FTN.bam hg19 released ENCFF030VNO bam alignments ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF107WKN, ENCFF807MUK, ENCFF950QCU 4847850836 ENCODE Processing Pipeline 82f19871147a75cc12b297b61d6549e1 https://www.encodeproject.org/files/ENCFF030VNO/@@download/ENCFF030VNO.bam hg19 released ENCFF741JBT bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF114BXG, ENCFF807MUK 511361755 ENCODE Processing Pipeline 09b0b18139b1d854984d672a31cda0fe https://www.encodeproject.org/files/ENCFF741JBT/@@download/ENCFF741JBT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF764SIQ bam alignments ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF616ZLN, ENCFF807MUK 822857823 ENCODE Processing Pipeline 53afa648d41422dbf50ecce29b7f219a https://www.encodeproject.org/files/ENCFF764SIQ/@@download/ENCFF764SIQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF308BIP bam alignments ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF783HNP, ENCFF807MUK, ENCFF865CRA 3923525410 ENCODE Processing Pipeline 7593ee2c827c3cfcc3ba2aef37b56b7c https://www.encodeproject.org/files/ENCFF308BIP/@@download/ENCFF308BIP.bam hg19 released antibody characterized with exemption ENCFF040UMF bam alignments ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF700SNB, ENCFF800HLE, ENCFF807MUK 4864398730 ENCODE Processing Pipeline 502f56c72d1e947279596e52851323f5 https://www.encodeproject.org/files/ENCFF040UMF/@@download/ENCFF040UMF.bam hg19 released antibody characterized with exemption ENCFF569UCD bam alignments ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF595UYF, ENCFF613GCH, ENCFF772IAG, ENCFF807MUK, ENCFF884DQI 9755318953 ENCODE Processing Pipeline a6a16a6bbae1e0a1bb292bcf9af5ef9f https://www.encodeproject.org/files/ENCFF569UCD/@@download/ENCFF569UCD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF880STQ bam alignments ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF014FRE, ENCFF090TRF, ENCFF233QXS, ENCFF800XBW, ENCFF807MUK 8018784753 ENCODE Processing Pipeline 3ac83b015b4e02cc6cd178e372033656 https://www.encodeproject.org/files/ENCFF880STQ/@@download/ENCFF880STQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF257FKU bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF685OLC, ENCFF807MUK 1330040272 ENCODE Processing Pipeline 093eb3f04382cfb0e832c4eed879e0db https://www.encodeproject.org/files/ENCFF257FKU/@@download/ENCFF257FKU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF025OET bam alignments ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF113FFZ, ENCFF807MUK 1630670024 ENCODE Processing Pipeline bd6c099f2b2dc9bff5a39c4122e63751 https://www.encodeproject.org/files/ENCFF025OET/@@download/ENCFF025OET.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321FUE bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 76 ENCFF249QKO, ENCFF807MUK 1078215807 ENCODE Processing Pipeline 020bdd242e0fa7a0301b129bd4c1ecb2 https://www.encodeproject.org/files/ENCFF321FUE/@@download/ENCFF321FUE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF451EVJ bam alignments ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 76 ENCFF731JAM, ENCFF807MUK 1259136429 ENCODE Processing Pipeline 12b6673e723e8209f9cbd4b37db166e3 https://www.encodeproject.org/files/ENCFF451EVJ/@@download/ENCFF451EVJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF204YUH bam alignments ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF399FYC, ENCFF547FDG, ENCFF807MUK 3747257419 ENCODE Processing Pipeline 2e3e6ccd45f853bac097899c50a06424 https://www.encodeproject.org/files/ENCFF204YUH/@@download/ENCFF204YUH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF583KIK bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 76 ENCFF393OKM, ENCFF807MUK 1353811966 ENCODE Processing Pipeline 99874430d66f641ccfa4f977e41aca33 https://www.encodeproject.org/files/ENCFF583KIK/@@download/ENCFF583KIK.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF748DXR bam alignments ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 76 ENCFF480HVG, ENCFF807MUK 2238764152 ENCODE Processing Pipeline 66225f4538ad464406b1cad0138de8f9 https://www.encodeproject.org/files/ENCFF748DXR/@@download/ENCFF748DXR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF779DOP bam alignments ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF008NBB, ENCFF476POX, ENCFF807MUK, ENCFF808IIT, ENCFF834PKM 5443528396 ENCODE Processing Pipeline 90a287222be0bb61ca4111b94e742226 https://www.encodeproject.org/files/ENCFF779DOP/@@download/ENCFF779DOP.bam hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF491RBM bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF210EIU, ENCFF807MUK 533056489 ENCODE Processing Pipeline 1c68c9b0b974b8380b2625f9be6419a6 https://www.encodeproject.org/files/ENCFF491RBM/@@download/ENCFF491RBM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF550BKL bam alignments ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF586AFS, ENCFF807MUK 627635473 ENCODE Processing Pipeline de4054ffd79adb0e9a1aa7e07e595543 https://www.encodeproject.org/files/ENCFF550BKL/@@download/ENCFF550BKL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF769WSP bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF407HGX, ENCFF807MUK 460398364 ENCODE Processing Pipeline 89d570c5d180d78739327c9ce8f91525 https://www.encodeproject.org/files/ENCFF769WSP/@@download/ENCFF769WSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF117ALF bam alignments ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF192STJ, ENCFF807MUK 454261050 ENCODE Processing Pipeline c8c5d322fada7712c17245c0090b8ced https://www.encodeproject.org/files/ENCFF117ALF/@@download/ENCFF117ALF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF781OBT bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF465JVB, ENCFF807MUK 516121911 ENCODE Processing Pipeline 838afc4bae77b0879d845e5b63c26207 https://www.encodeproject.org/files/ENCFF781OBT/@@download/ENCFF781OBT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF607KWI bam alignments ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF194KNQ, ENCFF807MUK 604078774 ENCODE Processing Pipeline 448b545807bf698540ef510ebe99596f https://www.encodeproject.org/files/ENCFF607KWI/@@download/ENCFF607KWI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF204OVV bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 100 ENCFF312PYR, ENCFF704VXZ, ENCFF807MUK 3983272961 ENCODE Processing Pipeline 50950638524401b4d0f2e3350a9b829c https://www.encodeproject.org/files/ENCFF204OVV/@@download/ENCFF204OVV.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF877UQR bam alignments ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 100 ENCFF034NND, ENCFF659LDK, ENCFF807MUK 3954852867 ENCODE Processing Pipeline 1abe90ff45e2291dff0d31acce06976c https://www.encodeproject.org/files/ENCFF877UQR/@@download/ENCFF877UQR.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF840LTU bam alignments ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF803COB, ENCFF807MUK, ENCFF866GSF 3583218224 ENCODE Processing Pipeline f02f2d563b3b81f7b9fee95fdb2dc287 https://www.encodeproject.org/files/ENCFF840LTU/@@download/ENCFF840LTU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF185TBI bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 100 ENCFF111ZWV, ENCFF129HKI, ENCFF807MUK 5605651361 ENCODE Processing Pipeline c7656835c6f5e9c989a5b0d3b79902e9 https://www.encodeproject.org/files/ENCFF185TBI/@@download/ENCFF185TBI.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF376JWD bam alignments ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 100 ENCFF333JPS, ENCFF439UUP, ENCFF807MUK 6462056624 ENCODE Processing Pipeline de94b48934a52e6c2df13455d839d28b https://www.encodeproject.org/files/ENCFF376JWD/@@download/ENCFF376JWD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF031XNE bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF807WOU 1424171528 ENCODE Processing Pipeline c2a1c5ca2dcacb085b83282dbc0ee675 https://www.encodeproject.org/files/ENCFF031XNE/@@download/ENCFF031XNE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684RLL bam alignments ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 76 ENCFF492CBJ, ENCFF807MUK 1910898776 ENCODE Processing Pipeline e043aa97ad91d9d0d814ae46e055141c https://www.encodeproject.org/files/ENCFF684RLL/@@download/ENCFF684RLL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF556SYP bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF807MUK, ENCFF810FJD, ENCFF976CUE 4515806518 ENCODE Processing Pipeline a2a56099cdb73789257e32a50a1c04dc https://www.encodeproject.org/files/ENCFF556SYP/@@download/ENCFF556SYP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF225ESX bam alignments ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF013WQU, ENCFF360HTD, ENCFF431JNS, ENCFF807MUK, ENCFF896JQM 3925385495 ENCODE Processing Pipeline 372b20c333f5bce72c2727b6b5a8ad00 https://www.encodeproject.org/files/ENCFF225ESX/@@download/ENCFF225ESX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF780RFE bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF355NCQ, ENCFF404NEP, ENCFF807MUK 3999419237 ENCODE Processing Pipeline f311896c0e46ea900be8215d9546cb3d https://www.encodeproject.org/files/ENCFF780RFE/@@download/ENCFF780RFE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF264WWV bam alignments ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF455GIL, ENCFF801FWC, ENCFF807MUK 3888439657 ENCODE Processing Pipeline 41d0138cd75ea13e380867704f465952 https://www.encodeproject.org/files/ENCFF264WWV/@@download/ENCFF264WWV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF077SLS bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 50 ENCFF350SEQ, ENCFF807MUK 787240767 ENCODE Processing Pipeline b7a07710d94c341399003c110a04cb65 https://www.encodeproject.org/files/ENCFF077SLS/@@download/ENCFF077SLS.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF012XJU bam alignments ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 50 ENCFF807MUK, ENCFF921JLH 1258126501 ENCODE Processing Pipeline 8caae9c190b52e530dca2aec9073c804 https://www.encodeproject.org/files/ENCFF012XJU/@@download/ENCFF012XJU.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF629GPG bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF524IZD, ENCFF807MUK, ENCFF998QDV 4639381839 ENCODE Processing Pipeline aa960ad4f74436ad0c2bc13fa0772238 https://www.encodeproject.org/files/ENCFF629GPG/@@download/ENCFF629GPG.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF978RGD bam alignments ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF009REX, ENCFF781ZAP, ENCFF807MUK 4839330267 ENCODE Processing Pipeline dec543a245a600cdb4bde349b5eb3723 https://www.encodeproject.org/files/ENCFF978RGD/@@download/ENCFF978RGD.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF000ZDD bam alignments ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZDH 407128294 Sherman Weissman, Yale f75a8e54e5900eddf3668e39692b5e4c https://www.encodeproject.org/files/ENCFF000ZDD/@@download/ENCFF000ZDD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZDE bam alignments ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZDI 371741688 Sherman Weissman, Yale df7ba9aa03c568e194c95d036fbc0db1 https://www.encodeproject.org/files/ENCFF000ZDE/@@download/ENCFF000ZDE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF269EAD bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF387THV, ENCFF807MUK, ENCFF975TEJ 5142050630 ENCODE Processing Pipeline 3ec178816536393440f54a6085b1e958 https://www.encodeproject.org/files/ENCFF269EAD/@@download/ENCFF269EAD.bam hg19 released ENCFF641ACA bam alignments ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF247XZL, ENCFF444TNL, ENCFF807MUK 5703611470 ENCODE Processing Pipeline f6cd48b41f9fd0f52240a4709f9c29b5 https://www.encodeproject.org/files/ENCFF641ACA/@@download/ENCFF641ACA.bam hg19 released ENCFF570ZQD bam alignments ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF032RPG, ENCFF807MUK, ENCFF858ZHX 1652817652 ENCODE Processing Pipeline d344ca8ffd1a94849932288d5e4ce927 https://www.encodeproject.org/files/ENCFF570ZQD/@@download/ENCFF570ZQD.bam hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF365JBZ bam alignments ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 100 ENCFF221NRW, ENCFF807MUK, ENCFF916HDR 2977391961 ENCODE Processing Pipeline 46e3d8357b7f768787c8a46711713329 https://www.encodeproject.org/files/ENCFF365JBZ/@@download/ENCFF365JBZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF713FNS bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 100 ENCFF807MUK, ENCFF814WTW, ENCFF975CDD 6351554405 ENCODE Processing Pipeline 5c8058cb4ea2ee6ac4f3f2e0b286814e https://www.encodeproject.org/files/ENCFF713FNS/@@download/ENCFF713FNS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF894UKH bam alignments ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 100 ENCFF251TJX, ENCFF484TAP, ENCFF807MUK 6401331353 ENCODE Processing Pipeline 7a624c6709a7ee1dda6d24869a73333d https://www.encodeproject.org/files/ENCFF894UKH/@@download/ENCFF894UKH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF657QCE bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 100 ENCFF215HYE, ENCFF408WZK, ENCFF807MUK 3947906806 ENCODE Processing Pipeline 49488fcbe80cd8c26e581fba33da2395 https://www.encodeproject.org/files/ENCFF657QCE/@@download/ENCFF657QCE.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF111YNK bam alignments ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 100 ENCFF074EGX, ENCFF807MUK, ENCFF964LGL 5055250856 ENCODE Processing Pipeline 8632c593222fdb04e9267e2d14797b30 https://www.encodeproject.org/files/ENCFF111YNK/@@download/ENCFF111YNK.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF401DJS bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF807MUK, ENCFF961WCQ 1087728566 ENCODE Processing Pipeline 13590fd6a21e9141eef4ea743f12d538 https://www.encodeproject.org/files/ENCFF401DJS/@@download/ENCFF401DJS.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF933BWH bam alignments ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF005ONO, ENCFF807MUK 1087331478 ENCODE Processing Pipeline b0ecb3da877639dccd463cd36af3a305 https://www.encodeproject.org/files/ENCFF933BWH/@@download/ENCFF933BWH.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF949DKV bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 100 ENCFF194BDT, ENCFF209IJT, ENCFF807MUK 3236452654 ENCODE Processing Pipeline 6a69b78ed811b81768f2f83ea7a66c38 https://www.encodeproject.org/files/ENCFF949DKV/@@download/ENCFF949DKV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF126ECH bam alignments ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 100 ENCFF017QRM, ENCFF805JBH, ENCFF807MUK 3154484103 ENCODE Processing Pipeline bb319356ff8aef50d0a6052aa48eec11 https://www.encodeproject.org/files/ENCFF126ECH/@@download/ENCFF126ECH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF738KYR bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF294AGC, ENCFF807MUK 1757463790 ENCODE Processing Pipeline 2ad43eb6614180d82d64659a3696fe97 https://www.encodeproject.org/files/ENCFF738KYR/@@download/ENCFF738KYR.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF763FHB bam alignments ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF896YTL 1782413450 ENCODE Processing Pipeline a7d2aca902d95441bacc41cfee800d9d https://www.encodeproject.org/files/ENCFF763FHB/@@download/ENCFF763FHB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF304WKT bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF236GZM, ENCFF395GMN, ENCFF807MUK 5352413850 ENCODE Processing Pipeline 421185c5ba34dbdf876f2ea11f91ff1a https://www.encodeproject.org/files/ENCFF304WKT/@@download/ENCFF304WKT.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF333FLO bam alignments ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF359AZP, ENCFF361JMR, ENCFF807MUK 5028659762 ENCODE Processing Pipeline 0144fdc6339c1b536edc8565cbde51c9 https://www.encodeproject.org/files/ENCFF333FLO/@@download/ENCFF333FLO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF228PUZ bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 100 ENCFF450SIM, ENCFF807MUK, ENCFF939DJP 5730946124 ENCODE Processing Pipeline b848f6cf88286c03d54bc3afd3036d45 https://www.encodeproject.org/files/ENCFF228PUZ/@@download/ENCFF228PUZ.bam hg19 released borderline replicate concordance ENCFF226CEN bam alignments ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 100 ENCFF047PYS, ENCFF320PNH, ENCFF807MUK 4467833430 ENCODE Processing Pipeline 946585dd71e24df555cfec154e20639f https://www.encodeproject.org/files/ENCFF226CEN/@@download/ENCFF226CEN.bam hg19 released borderline replicate concordance ENCFF289DJO bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 36 ENCFF706MMH, ENCFF807MUK 968231906 ENCODE Processing Pipeline 37ecb32d970ae894e52a38c8879034ae https://www.encodeproject.org/files/ENCFF289DJO/@@download/ENCFF289DJO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF485TGQ bam alignments ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 36 ENCFF070FBD, ENCFF178RPW, ENCFF768XYK, ENCFF807MUK 2191634431 ENCODE Processing Pipeline d8a6c5df14b56cdd01e3100ef7b61f3d https://www.encodeproject.org/files/ENCFF485TGQ/@@download/ENCFF485TGQ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF130QXF bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 100 ENCFF104MAP, ENCFF424SGO, ENCFF807MUK 5600709587 ENCODE Processing Pipeline adfbb80331229e0343246b1870b9f41f https://www.encodeproject.org/files/ENCFF130QXF/@@download/ENCFF130QXF.bam hg19 released ENCFF050NKD bam alignments ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 100 ENCFF548UJE, ENCFF807MUK, ENCFF843CJY 4691268833 ENCODE Processing Pipeline 3e1b39f0e28fa44e524ccd6927c9578f https://www.encodeproject.org/files/ENCFF050NKD/@@download/ENCFF050NKD.bam hg19 released ENCFF967IZV bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 76 ENCFF720DMM, ENCFF807MUK 965887552 ENCODE Processing Pipeline c36aa8e9a1b3bced61e3fea6fcaee748 https://www.encodeproject.org/files/ENCFF967IZV/@@download/ENCFF967IZV.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF787PIX bam alignments ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 76 ENCFF099NTW, ENCFF807MUK 1398977159 ENCODE Processing Pipeline 2fbfda063d4add327cb892ac64907738 https://www.encodeproject.org/files/ENCFF787PIX/@@download/ENCFF787PIX.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF839XNR bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 3 100 ENCFF499MPN, ENCFF807MUK, ENCFF902KOT 2159513349 ENCODE Processing Pipeline 36d2e7a2a2b18e4052ccaf77db9bacce https://www.encodeproject.org/files/ENCFF839XNR/@@download/ENCFF839XNR.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF082MPF bam alignments ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA False 2017-01-31 ENCODE 4 100 ENCFF100NWH, ENCFF594FPL, ENCFF807MUK 1858610726 ENCODE Processing Pipeline df9b1576b5d61a846c96e740701e1d25 https://www.encodeproject.org/files/ENCFF082MPF/@@download/ENCFF082MPF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF581OTA bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF368ZQP, ENCFF807MUK 1149184398 ENCODE Processing Pipeline a2bb03bfeb561df8819c930f8c80df11 https://www.encodeproject.org/files/ENCFF581OTA/@@download/ENCFF581OTA.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF927XWG bam alignments ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF053UHJ, ENCFF807MUK 1247158957 ENCODE Processing Pipeline 2f4a96420fd7f068febc341704bb48d6 https://www.encodeproject.org/files/ENCFF927XWG/@@download/ENCFF927XWG.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF807EAV bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF402HLR, ENCFF803NZA, ENCFF807MUK 5675882863 ENCODE Processing Pipeline 986b7b1a6b14953431c5e702ec1f53bc https://www.encodeproject.org/files/ENCFF807EAV/@@download/ENCFF807EAV.bam hg19 released ENCFF765SYH bam alignments ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF091COJ, ENCFF807MUK, ENCFF892KUR 7537605040 ENCODE Processing Pipeline e2067878b573e585bc5d3ca1ee2f2048 https://www.encodeproject.org/files/ENCFF765SYH/@@download/ENCFF765SYH.bam hg19 released ENCFF704DUW bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 100 ENCFF059FPN, ENCFF668JXE, ENCFF807MUK 7968240324 ENCODE Processing Pipeline a5fec1b8802a9e169101187f6b98ec67 https://www.encodeproject.org/files/ENCFF704DUW/@@download/ENCFF704DUW.bam hg19 released NTR biosample ENCFF366VQS bam alignments ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 100 ENCFF026OWV, ENCFF454AFY, ENCFF807MUK 8806005407 ENCODE Processing Pipeline 4ab52c4f5df203b29b569220690f853e https://www.encodeproject.org/files/ENCFF366VQS/@@download/ENCFF366VQS.bam hg19 released NTR biosample ENCFF601MGR bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF525FCD, ENCFF807MUK, ENCFF862ENY 4019641448 ENCODE Processing Pipeline a18ef487a337c248b37ad5088ec91b46 https://www.encodeproject.org/files/ENCFF601MGR/@@download/ENCFF601MGR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF502IBE bam alignments ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 100 ENCFF212WVZ, ENCFF322UDQ, ENCFF807MUK 5453650450 ENCODE Processing Pipeline 707a1a309349ae9010a4b91850e09e4d https://www.encodeproject.org/files/ENCFF502IBE/@@download/ENCFF502IBE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF122TOW bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF771ONE, ENCFF807MUK, ENCFF840RUR 4767089912 ENCODE Processing Pipeline 079503a71f7e549967a5c5b3f9c9b819 https://www.encodeproject.org/files/ENCFF122TOW/@@download/ENCFF122TOW.bam hg19 released borderline replicate concordance ENCFF245NUX bam alignments ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF722QNA, ENCFF807MUK, ENCFF899JCP 5560187940 ENCODE Processing Pipeline b426f1f68681797cad95caab71d79c73 https://www.encodeproject.org/files/ENCFF245NUX/@@download/ENCFF245NUX.bam hg19 released borderline replicate concordance ENCFF140MOX bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF672YYT, ENCFF807MUK, ENCFF953SOH 5035042642 ENCODE Processing Pipeline 3c52f58ea6ab5cf9486c11e0c43f4315 https://www.encodeproject.org/files/ENCFF140MOX/@@download/ENCFF140MOX.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF366UNV bam alignments ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF581WJZ, ENCFF780PZK, ENCFF807MUK 7760398043 ENCODE Processing Pipeline 644f0e193e1d6d9acd49362a7ddbc7d7 https://www.encodeproject.org/files/ENCFF366UNV/@@download/ENCFF366UNV.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF615FQC bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 100 ENCFF005ZXV, ENCFF540YVR, ENCFF807MUK 3498324117 ENCODE Processing Pipeline 23d1a0eb10dfc3c83de676c0b5702ff9 https://www.encodeproject.org/files/ENCFF615FQC/@@download/ENCFF615FQC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF141OWA bam alignments ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 100 ENCFF501ZOW, ENCFF687ONI, ENCFF807MUK 3328175970 ENCODE Processing Pipeline 3d9a95c5714b7b43f2c4d4837f6b535b https://www.encodeproject.org/files/ENCFF141OWA/@@download/ENCFF141OWA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF690ANL bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF090URG, ENCFF774IAM, ENCFF807MUK 4511239846 ENCODE Processing Pipeline 72b47e2dc036832eadf5aa29119fa565 https://www.encodeproject.org/files/ENCFF690ANL/@@download/ENCFF690ANL.bam hg19 released mild to moderate bottlenecking ENCFF317BEW bam alignments ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF383GYI, ENCFF696OAD, ENCFF807MUK 4616010762 ENCODE Processing Pipeline 4a07cebcf7b4df27c288a9ae01e14705 https://www.encodeproject.org/files/ENCFF317BEW/@@download/ENCFF317BEW.bam hg19 released mild to moderate bottlenecking ENCFF742OQD bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 100 ENCFF277TPF, ENCFF653JCP, ENCFF807MUK 5841556680 ENCODE Processing Pipeline 1858ad03e640753e8f9d22cc7927a72b https://www.encodeproject.org/files/ENCFF742OQD/@@download/ENCFF742OQD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF377ZFJ bam alignments ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 100 ENCFF391TLW, ENCFF807MUK, ENCFF905VYB 4134030165 ENCODE Processing Pipeline 1a7b6c2b011eb644a3c40f65dd630ea8 https://www.encodeproject.org/files/ENCFF377ZFJ/@@download/ENCFF377ZFJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF978LUN bam alignments ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF706ERC, ENCFF797OQU, ENCFF807MUK 3135285056 ENCODE Processing Pipeline 4f4156e4c923b8f6f5d43f55ca32fb63 https://www.encodeproject.org/files/ENCFF978LUN/@@download/ENCFF978LUN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF669LOS bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF272DKU, ENCFF807MUK, ENCFF808AUX 4992890604 ENCODE Processing Pipeline 60df4faac53280d1dc842188cabc37dc https://www.encodeproject.org/files/ENCFF669LOS/@@download/ENCFF669LOS.bam hg19 released antibody characterized with exemption ENCFF359SWY bam alignments ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF385PER, ENCFF807MUK, ENCFF991XUU 6103137889 ENCODE Processing Pipeline 877d7cf3233e35a5050c6e6bc55eacc5 https://www.encodeproject.org/files/ENCFF359SWY/@@download/ENCFF359SWY.bam hg19 released antibody characterized with exemption ENCFF859OWC bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF519ZJI, ENCFF748THJ, ENCFF807MUK 4937770222 ENCODE Processing Pipeline f5ff95b4a327065f1ff6ee3d9842a169 https://www.encodeproject.org/files/ENCFF859OWC/@@download/ENCFF859OWC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF199CWG bam alignments ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 3 101 ENCFF457RTQ, ENCFF807MUK, ENCFF977ONA 4671886715 ENCODE Processing Pipeline fee8489bf88474f9e2bd83482a10c3ba https://www.encodeproject.org/files/ENCFF199CWG/@@download/ENCFF199CWG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF401WQB bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 100 ENCFF157OJP, ENCFF616IVU, ENCFF807MUK 3860283637 ENCODE Processing Pipeline b715f34fd6a6c717751ffbcddc8f2a71 https://www.encodeproject.org/files/ENCFF401WQB/@@download/ENCFF401WQB.bam hg19 released mild to moderate bottlenecking ENCFF741WIH bam alignments ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 100 ENCFF038CZC, ENCFF307UWA, ENCFF807MUK 5851523544 ENCODE Processing Pipeline 8330b124e8ca84285f60951a778113c1 https://www.encodeproject.org/files/ENCFF741WIH/@@download/ENCFF741WIH.bam hg19 released mild to moderate bottlenecking ENCFF551QCK bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF110EDY, ENCFF807MUK 594643035 ENCODE Processing Pipeline 035431d6db3a4437276f3d8a4adfea10 https://www.encodeproject.org/files/ENCFF551QCK/@@download/ENCFF551QCK.bam hg19 released low read length, low read depth ENCFF546AFS bam alignments ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF466MIW, ENCFF807MUK 634629540 ENCODE Processing Pipeline 6b5bf2a1dfa3db24e5b9c5a89b0f353a https://www.encodeproject.org/files/ENCFF546AFS/@@download/ENCFF546AFS.bam hg19 released low read length, low read depth ENCFF697WPU bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 101 ENCFF127RWF, ENCFF718YAQ, ENCFF807MUK 3307679291 ENCODE Processing Pipeline bfb4c7022210c46b3c649c1cbc317a63 https://www.encodeproject.org/files/ENCFF697WPU/@@download/ENCFF697WPU.bam hg19 released experiment not submitted to GEO ENCFF609FMU bam alignments ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 101 ENCFF256QXE, ENCFF807MUK, ENCFF986FXN 3052479055 ENCODE Processing Pipeline fd3959435ed98d2512d6f818899ba79f https://www.encodeproject.org/files/ENCFF609FMU/@@download/ENCFF609FMU.bam hg19 released experiment not submitted to GEO ENCFF554XHJ bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF160RVI, ENCFF807MUK, ENCFF832CXC 3926366931 ENCODE Processing Pipeline 8e7fec0c0f33f1956593de636b28961c https://www.encodeproject.org/files/ENCFF554XHJ/@@download/ENCFF554XHJ.bam hg19 released ENCFF654ZRK bam alignments ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF091KYM, ENCFF556XVA, ENCFF807MUK 5425199864 ENCODE Processing Pipeline 6f2cec31f1409dd18474746d59b05154 https://www.encodeproject.org/files/ENCFF654ZRK/@@download/ENCFF654ZRK.bam hg19 released ENCFF412LRS bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF139SOU, ENCFF434PLO, ENCFF807MUK 3839630593 ENCODE Processing Pipeline 4f262aaa67fe26bfe8f7bba66dcea831 https://www.encodeproject.org/files/ENCFF412LRS/@@download/ENCFF412LRS.bam hg19 released borderline replicate concordance ENCFF950LGW bam alignments ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF032QDB, ENCFF638OLJ, ENCFF807MUK 4656975559 ENCODE Processing Pipeline 5aa2a4f1f5ee766f3690a1c7f3e882b1 https://www.encodeproject.org/files/ENCFF950LGW/@@download/ENCFF950LGW.bam hg19 released borderline replicate concordance ENCFF983SGW bam alignments ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF483MLV, ENCFF745ORG, ENCFF807MUK 3301383891 ENCODE Processing Pipeline 26e9aaeceeba3b45e42d416ee6f8f7bf https://www.encodeproject.org/files/ENCFF983SGW/@@download/ENCFF983SGW.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF214BIG bam alignments ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF175RYK, ENCFF287TQD, ENCFF807MUK 3978133257 ENCODE Processing Pipeline 913751d33d1d76ab5ef340c1ca093288 https://www.encodeproject.org/files/ENCFF214BIG/@@download/ENCFF214BIG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF641MHP bam alignments ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF069AUE, ENCFF404WKI, ENCFF807MUK 4467715359 ENCODE Processing Pipeline 6d7a891216a6a262a95ec51244d29632 https://www.encodeproject.org/files/ENCFF641MHP/@@download/ENCFF641MHP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF241EOY bam alignments ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF258KHA, ENCFF784WOU, ENCFF807MUK 2954555267 ENCODE Processing Pipeline f07c6a7c717ba5517d54297a0aacc295 https://www.encodeproject.org/files/ENCFF241EOY/@@download/ENCFF241EOY.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF485STY bam alignments ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF096WFG, ENCFF550IEW, ENCFF807MUK 4518894260 ENCODE Processing Pipeline dc47e81849db0d191edaf36808d5ef29 https://www.encodeproject.org/files/ENCFF485STY/@@download/ENCFF485STY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF498ZOO bam alignments ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF036RTO, ENCFF057CUF, ENCFF807MUK 4058470209 ENCODE Processing Pipeline 49b9aa4eb0fd3770eacf0fb4351acb41 https://www.encodeproject.org/files/ENCFF498ZOO/@@download/ENCFF498ZOO.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF125ZRD bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 100 ENCFF196OYG, ENCFF722QHD, ENCFF807MUK 3629552076 ENCODE Processing Pipeline 52720fb91668c9aca1e0493249a8efe7 https://www.encodeproject.org/files/ENCFF125ZRD/@@download/ENCFF125ZRD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF951PIU bam alignments ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 100 ENCFF807MUK, ENCFF814CIF, ENCFF860HSN 4244754506 ENCODE Processing Pipeline ee36ca99ba91fc5715c6e7a23a47955c https://www.encodeproject.org/files/ENCFF951PIU/@@download/ENCFF951PIU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF873ZZW bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 100 ENCFF773RRJ, ENCFF807MUK, ENCFF864GSN 3541761227 ENCODE Processing Pipeline fdac7ebfb64e81ba4ddecd4c0910e9eb https://www.encodeproject.org/files/ENCFF873ZZW/@@download/ENCFF873ZZW.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF329ZGR bam alignments ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 100 ENCFF011RRD, ENCFF460XZT, ENCFF807MUK 3722604626 ENCODE Processing Pipeline 8434a97497a09ae8f98cb8dcb1abd250 https://www.encodeproject.org/files/ENCFF329ZGR/@@download/ENCFF329ZGR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF308BKD bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 100 ENCFF307CQO, ENCFF683PDC, ENCFF807MUK 4492676344 ENCODE Processing Pipeline 0c3920735cb5ee18984de6cad25d2df0 https://www.encodeproject.org/files/ENCFF308BKD/@@download/ENCFF308BKD.bam hg19 released missing genetic modification characterization ENCFF743FRI bam alignments ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 100 ENCFF131JSB, ENCFF711WIA, ENCFF807MUK 3996168283 ENCODE Processing Pipeline a8f4427760911fb614748587c0bb0933 https://www.encodeproject.org/files/ENCFF743FRI/@@download/ENCFF743FRI.bam hg19 released missing genetic modification characterization ENCFF729OTK bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 100 ENCFF399MEA, ENCFF509CBV, ENCFF807MUK 4392752305 ENCODE Processing Pipeline b5b652bc2daaa534e8d8115db58828a3 https://www.encodeproject.org/files/ENCFF729OTK/@@download/ENCFF729OTK.bam hg19 released ENCFF825FCH bam alignments ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 100 ENCFF316YEK, ENCFF512ION, ENCFF807MUK 4223801495 ENCODE Processing Pipeline bc6ee3ef3506ef53bd017d3995a0d5d2 https://www.encodeproject.org/files/ENCFF825FCH/@@download/ENCFF825FCH.bam hg19 released ENCFF720JWD bam alignments ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF451LIG, ENCFF807MUK, ENCFF851YSO 2515667762 ENCODE Processing Pipeline bf883225d2732cf2716c7a4e275f2e06 https://www.encodeproject.org/files/ENCFF720JWD/@@download/ENCFF720JWD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF645NAU bam alignments ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAY, ENCFF807MUK 616156307 ENCODE Processing Pipeline c817b09042e12a758fa1e983581628da https://www.encodeproject.org/files/ENCFF645NAU/@@download/ENCFF645NAU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF163ARJ bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 100 ENCFF325DTB, ENCFF749RRK, ENCFF807MUK 1895864682 ENCODE Processing Pipeline cee74e01b41e65e84fb825123154fabc https://www.encodeproject.org/files/ENCFF163ARJ/@@download/ENCFF163ARJ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF290MFM bam alignments ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 100 ENCFF076YGT, ENCFF380PYR, ENCFF807MUK 4693498249 ENCODE Processing Pipeline dd72f6a25a0e0f1df274b0f904fd02f3 https://www.encodeproject.org/files/ENCFF290MFM/@@download/ENCFF290MFM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF565VSK bam alignments ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF531WQP, ENCFF590HVE, ENCFF807MUK 2985009116 ENCODE Processing Pipeline d5f764192f0c491d0d7b20a6f8507523 https://www.encodeproject.org/files/ENCFF565VSK/@@download/ENCFF565VSK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF137WND bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 100 ENCFF315YLZ, ENCFF649JEY, ENCFF807MUK 4277753557 ENCODE Processing Pipeline dd860b59a0b5d4e2ddf800c445cbed88 https://www.encodeproject.org/files/ENCFF137WND/@@download/ENCFF137WND.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF180VYU bam alignments ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 100 ENCFF150HAD, ENCFF768KWX, ENCFF807MUK 4144058808 ENCODE Processing Pipeline c99c8a6ca1afbed1add1239cb5a09c0b https://www.encodeproject.org/files/ENCFF180VYU/@@download/ENCFF180VYU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF075WIK bam alignments ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF234UHU, ENCFF775BKO, ENCFF807MUK 2505185642 ENCODE Processing Pipeline dacbc4989dd8856e4e2a8765bbffa424 https://www.encodeproject.org/files/ENCFF075WIK/@@download/ENCFF075WIK.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF367HYB bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 100 ENCFF036YYM, ENCFF807MUK, ENCFF949LLJ 4594559481 ENCODE Processing Pipeline ad7a06d383f969645326098c4c79bec4 https://www.encodeproject.org/files/ENCFF367HYB/@@download/ENCFF367HYB.bam hg19 released ENCFF367UIT bam alignments ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 100 ENCFF047XMV, ENCFF423KKF, ENCFF807MUK 4882298919 ENCODE Processing Pipeline 8e9d2f76184f85e16e3c93620c75c90d https://www.encodeproject.org/files/ENCFF367UIT/@@download/ENCFF367UIT.bam hg19 released ENCFF312LTL bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 100 ENCFF328CPO, ENCFF761YLA, ENCFF807MUK 6044549175 ENCODE Processing Pipeline dc117d863ec7dfed477a2904aab77931 https://www.encodeproject.org/files/ENCFF312LTL/@@download/ENCFF312LTL.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF969MDP bam alignments ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 100 ENCFF170NRX, ENCFF697UGT, ENCFF807MUK 7943270603 ENCODE Processing Pipeline 76960cb610de05d43609736f402e4d4a https://www.encodeproject.org/files/ENCFF969MDP/@@download/ENCFF969MDP.bam hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF821WQW bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 100 ENCFF195VBJ, ENCFF594PZU, ENCFF807MUK 4831825733 ENCODE Processing Pipeline e9c6eeedee7dc41d6e19ca6f7a6777f3 https://www.encodeproject.org/files/ENCFF821WQW/@@download/ENCFF821WQW.bam hg19 released ENCFF370OOM bam alignments ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 100 ENCFF032BZZ, ENCFF089AER, ENCFF807MUK 5270192748 ENCODE Processing Pipeline 0182268d325f4004f4852e9b84360b98 https://www.encodeproject.org/files/ENCFF370OOM/@@download/ENCFF370OOM.bam hg19 released ENCFF094TQU bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 100 ENCFF321WHZ, ENCFF807MUK, ENCFF905FGU 4209188851 ENCODE Processing Pipeline 3427373ee1d121e285de2feda53c4574 https://www.encodeproject.org/files/ENCFF094TQU/@@download/ENCFF094TQU.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF592NKP bam alignments ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 100 ENCFF715YUU, ENCFF717UVU, ENCFF807MUK 4548914779 ENCODE Processing Pipeline 5c7087ef2c0ea449226f692cccc0f726 https://www.encodeproject.org/files/ENCFF592NKP/@@download/ENCFF592NKP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF606OCK bam alignments ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 100 ENCFF115IMK, ENCFF166CFL, ENCFF807MUK 2867561708 ENCODE Processing Pipeline 1303b017472aad2d69cd831ff6c6a50b https://www.encodeproject.org/files/ENCFF606OCK/@@download/ENCFF606OCK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF656GUQ bam alignments ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF547OPO, ENCFF807MUK, ENCFF996YRU 2859901328 ENCODE Processing Pipeline 6e92aa5f1445f1185243744481a7b393 https://www.encodeproject.org/files/ENCFF656GUQ/@@download/ENCFF656GUQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF455LNX bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 100 ENCFF183QAJ, ENCFF238XIH, ENCFF807MUK 2617638268 ENCODE Processing Pipeline a7e3697ec3cc12c498f71b29ed59b680 https://www.encodeproject.org/files/ENCFF455LNX/@@download/ENCFF455LNX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF194UHW bam alignments ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 100 ENCFF431UPR, ENCFF530OLZ, ENCFF807MUK 3438886199 ENCODE Processing Pipeline 0fa9c81384860ddcfaad6f7a7d0b4c5c https://www.encodeproject.org/files/ENCFF194UHW/@@download/ENCFF194UHW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF158RWF bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 100 ENCFF807MUK, ENCFF928ZAS, ENCFF971CJJ 3794979372 ENCODE Processing Pipeline a2f1f488c331aea69c4b91ead2d8fe08 https://www.encodeproject.org/files/ENCFF158RWF/@@download/ENCFF158RWF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF851YDT bam alignments ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 100 ENCFF124KEV, ENCFF584BPF, ENCFF807MUK 3213871873 ENCODE Processing Pipeline da44ff612dde64e74217e2a6b5075c5b https://www.encodeproject.org/files/ENCFF851YDT/@@download/ENCFF851YDT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF046FQA bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 100 ENCFF208FVT, ENCFF675BIJ, ENCFF807MUK 1743833447 ENCODE Processing Pipeline 88f712cfc40afb3b0e65f243ce16c65a https://www.encodeproject.org/files/ENCFF046FQA/@@download/ENCFF046FQA.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF770KIN bam alignments ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 100 ENCFF130KTQ, ENCFF206XVH, ENCFF807MUK 6767492163 ENCODE Processing Pipeline 78ffde63bfa1c6edeef7320a9771d169 https://www.encodeproject.org/files/ENCFF770KIN/@@download/ENCFF770KIN.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF749IJR bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF700ORL, ENCFF807MUK, ENCFF969XQA 7414683810 ENCODE Processing Pipeline ef5cbc4c655066f8409d016f716ad1c3 https://www.encodeproject.org/files/ENCFF749IJR/@@download/ENCFF749IJR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF358VCI bam alignments ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF464DYS, ENCFF783BKL, ENCFF807MUK 8758865550 ENCODE Processing Pipeline 16fe6c89d5cbbc1923dc6402cdfd7714 https://www.encodeproject.org/files/ENCFF358VCI/@@download/ENCFF358VCI.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF938KSJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 50 ENCFF384QMY, ENCFF807MUK, ENCFF903EIQ 898063435 ENCODE Processing Pipeline ee965755ed5c75600ca2b650ccfb2e93 https://www.encodeproject.org/files/ENCFF938KSJ/@@download/ENCFF938KSJ.bam hg19 released missing genetic modification characterization ENCFF642OQJ bam alignments ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 50 ENCFF395ENN, ENCFF633GWT, ENCFF807MUK 1108681140 ENCODE Processing Pipeline ff5f766c0f696fb3986adc9246165a80 https://www.encodeproject.org/files/ENCFF642OQJ/@@download/ENCFF642OQJ.bam hg19 released missing genetic modification characterization ENCFF636ICA bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF340IWG, ENCFF402INY, ENCFF807MUK 3982115129 ENCODE Processing Pipeline b152e7dfa6411a1cfce94041cfdeed55 https://www.encodeproject.org/files/ENCFF636ICA/@@download/ENCFF636ICA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF764RCL bam alignments ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF329ZRM, ENCFF504ZSA, ENCFF807MUK 4781370417 ENCODE Processing Pipeline 745dc29075624e53f39062ed4e97744e https://www.encodeproject.org/files/ENCFF764RCL/@@download/ENCFF764RCL.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF013WTE bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF597HDK, ENCFF807MUK, ENCFF992IHE 2969152143 ENCODE Processing Pipeline ae8ad145aaa8f163c24d56c510e30ef8 https://www.encodeproject.org/files/ENCFF013WTE/@@download/ENCFF013WTE.bam hg19 released low read depth, missing genetic modification characterization ENCFF845UEU bam alignments ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF382BWE, ENCFF807MUK, ENCFF943GMA 3334855232 ENCODE Processing Pipeline 79c762b616784416edae1094518e8a50 https://www.encodeproject.org/files/ENCFF845UEU/@@download/ENCFF845UEU.bam hg19 released low read depth, missing genetic modification characterization ENCFF735BIE bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF321VUJ, ENCFF738LVY, ENCFF807MUK 9043080367 ENCODE Processing Pipeline 456891e8d2d653e8e0068320458c814a https://www.encodeproject.org/files/ENCFF735BIE/@@download/ENCFF735BIE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF150TKS bam alignments ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF777QMW, ENCFF807MUK, ENCFF810YUG 9080755023 ENCODE Processing Pipeline 45f9b8288a0a74f0e9240ac1f3d1111f https://www.encodeproject.org/files/ENCFF150TKS/@@download/ENCFF150TKS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF619ONV bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 100 ENCFF008APY, ENCFF451CTA, ENCFF807MUK 2678396970 ENCODE Processing Pipeline cc1e1c7947086387474d97dad383b483 https://www.encodeproject.org/files/ENCFF619ONV/@@download/ENCFF619ONV.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF364FHT bam alignments ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 100 ENCFF050QIO, ENCFF387SYY, ENCFF807MUK 4993198514 ENCODE Processing Pipeline e582b1f8e8c03fa4c92e6fad2abf4b4e https://www.encodeproject.org/files/ENCFF364FHT/@@download/ENCFF364FHT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF708ZXK bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 100 ENCFF358PYP, ENCFF684JBQ, ENCFF807MUK 3779657404 ENCODE Processing Pipeline c60ffeee94ef61ca65ca88a526496d64 https://www.encodeproject.org/files/ENCFF708ZXK/@@download/ENCFF708ZXK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF169LKQ bam alignments ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 100 ENCFF519FTA, ENCFF607CQM, ENCFF807MUK 6325586843 ENCODE Processing Pipeline 0f762170d89fc16c20a17072b5f4514e https://www.encodeproject.org/files/ENCFF169LKQ/@@download/ENCFF169LKQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF323QMI bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF088PXS, ENCFF747RJL, ENCFF807MUK 7265074318 ENCODE Processing Pipeline 07a738c4f1b98faa0bb5386e3b92597c https://www.encodeproject.org/files/ENCFF323QMI/@@download/ENCFF323QMI.bam hg19 released mild to moderate bottlenecking ENCFF384TCX bam alignments ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF190SME, ENCFF202AUU, ENCFF681LMY, ENCFF807MUK, ENCFF863ZTU 9951561698 ENCODE Processing Pipeline 01ec252f1a11ba6f3d4366e1788a886d https://www.encodeproject.org/files/ENCFF384TCX/@@download/ENCFF384TCX.bam hg19 released mild to moderate bottlenecking ENCFF936KYO bam alignments ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF300RLH, ENCFF807MUK, ENCFF956QIS 3399433783 ENCODE Processing Pipeline a8fccde071ceac8828343df4db68ed1d https://www.encodeproject.org/files/ENCFF936KYO/@@download/ENCFF936KYO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF019FLT bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 76 ENCFF095XXT, ENCFF807MUK 1024240981 ENCODE Processing Pipeline ae62f42f0a36d83fabf2e5289298318c https://www.encodeproject.org/files/ENCFF019FLT/@@download/ENCFF019FLT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF104USR bam alignments ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 76 ENCFF272TAW, ENCFF807MUK 1371233008 ENCODE Processing Pipeline db4a1586c2def47bf1402358104b1a7c https://www.encodeproject.org/files/ENCFF104USR/@@download/ENCFF104USR.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF998QTY bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF260FBF, ENCFF807MUK 669083768 ENCODE Processing Pipeline 270c18075e14173932a0989a3c32d3de https://www.encodeproject.org/files/ENCFF998QTY/@@download/ENCFF998QTY.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF431UUS bam alignments ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF697NYE, ENCFF807MUK 688291916 ENCODE Processing Pipeline 7f13e03a5e36a2ba69528b06934dd045 https://www.encodeproject.org/files/ENCFF431UUS/@@download/ENCFF431UUS.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF939HKH bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 100 ENCFF489XKU, ENCFF807MUK, ENCFF811IJJ 6868660915 ENCODE Processing Pipeline 793c13a6d4554e9c5dd54f5aaccb63b7 https://www.encodeproject.org/files/ENCFF939HKH/@@download/ENCFF939HKH.bam hg19 released NTR biosample ENCFF163GGL bam alignments ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 101 ENCFF223VZW, ENCFF792PVA, ENCFF807MUK 11053301127 ENCODE Processing Pipeline 47ff90295be4728a1045298875bc9fa7 https://www.encodeproject.org/files/ENCFF163GGL/@@download/ENCFF163GGL.bam hg19 released NTR biosample ENCFF454ZDW bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BEY, ENCFF807MUK 1076764085 ENCODE Processing Pipeline 46509af6c013136bf9607bbb3c664d7f https://www.encodeproject.org/files/ENCFF454ZDW/@@download/ENCFF454ZDW.bam hg19 released borderline replicate concordance, low read depth ENCFF135QBJ bam alignments ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BEZ, ENCFF807MUK 1337498004 ENCODE Processing Pipeline bbc64559ead65b0a38cf866cfd983506 https://www.encodeproject.org/files/ENCFF135QBJ/@@download/ENCFF135QBJ.bam hg19 released borderline replicate concordance, low read depth ENCFF500GPO bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF964RPP 1051799974 ENCODE Processing Pipeline 7f6a54b74440f971bd3ded4b5c9bbaa0 https://www.encodeproject.org/files/ENCFF500GPO/@@download/ENCFF500GPO.bam hg19 released low read depth, antibody characterized with exemption ENCFF517YSM bam alignments ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFH, ENCFF807MUK 1048679444 ENCODE Processing Pipeline f542a92b10f88d5b03d66a033833841a https://www.encodeproject.org/files/ENCFF517YSM/@@download/ENCFF517YSM.bam hg19 released low read depth, antibody characterized with exemption ENCFF086LJZ bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFN, ENCFF807MUK 1030025425 ENCODE Processing Pipeline ff112d956ea46eecaf08405d17c4b815 https://www.encodeproject.org/files/ENCFF086LJZ/@@download/ENCFF086LJZ.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF720HIA bam alignments ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF807MUK, ENCFF932ZZU 1401673146 ENCODE Processing Pipeline 30efcdd96c494a1de71659e164c357b2 https://www.encodeproject.org/files/ENCFF720HIA/@@download/ENCFF720HIA.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF678WSG bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 100 ENCFF026WQA, ENCFF199DAD, ENCFF807MUK 2960969785 ENCODE Processing Pipeline 2c025867a1b3069f6398d8a21e212646 https://www.encodeproject.org/files/ENCFF678WSG/@@download/ENCFF678WSG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF252BPD bam alignments ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 100 ENCFF274ZEZ, ENCFF565JGI, ENCFF807MUK 2333810785 ENCODE Processing Pipeline f47a96c00d0f28b6977e05109b796b81 https://www.encodeproject.org/files/ENCFF252BPD/@@download/ENCFF252BPD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF226SMC bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 100 ENCFF807MUK, ENCFF898UXT, ENCFF971OYB 4303131168 ENCODE Processing Pipeline f4b736b750aa6417eda456482809a68d https://www.encodeproject.org/files/ENCFF226SMC/@@download/ENCFF226SMC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF106KDN bam alignments ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 100 ENCFF143IFX, ENCFF356UYQ, ENCFF807MUK 5418120683 ENCODE Processing Pipeline dcad086603206babe97eeffd9c966500 https://www.encodeproject.org/files/ENCFF106KDN/@@download/ENCFF106KDN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF653FYP bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF034LKJ, ENCFF118PSY, ENCFF807MUK 3624455568 ENCODE Processing Pipeline ac0e263a0d2a33ff4c6fa4e492a205dd https://www.encodeproject.org/files/ENCFF653FYP/@@download/ENCFF653FYP.bam hg19 released low read depth, missing genetic modification characterization ENCFF497VZQ bam alignments ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF105YSI, ENCFF719JFL, ENCFF807MUK 2587343753 ENCODE Processing Pipeline 00ecfa801277a45f0bd49ab3a924a42e https://www.encodeproject.org/files/ENCFF497VZQ/@@download/ENCFF497VZQ.bam hg19 released low read depth, missing genetic modification characterization ENCFF310DOA bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 50 ENCFF271TCS, ENCFF508KFG, ENCFF807MUK 1293363302 ENCODE Processing Pipeline 789fbe558dda760f55d27b0b36698bd8 https://www.encodeproject.org/files/ENCFF310DOA/@@download/ENCFF310DOA.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF303OOS bam alignments ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 50 ENCFF179MKT, ENCFF282ZHS, ENCFF807MUK 1578533844 ENCODE Processing Pipeline 5cf8edcaec83e858369417128bb83c90 https://www.encodeproject.org/files/ENCFF303OOS/@@download/ENCFF303OOS.bam hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF179UQW bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF079AVI, ENCFF807MUK, ENCFF855HOA 1769583501 ENCODE Processing Pipeline bf877ea80b7cd7dcdfeebe380d8cb6c9 https://www.encodeproject.org/files/ENCFF179UQW/@@download/ENCFF179UQW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF811OMJ bam alignments ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208PYP, ENCFF807MUK, ENCFF947KVR 2060809926 ENCODE Processing Pipeline 4b7e2f167ec5518ea5e3f8afc7820a34 https://www.encodeproject.org/files/ENCFF811OMJ/@@download/ENCFF811OMJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF688OTD bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 101 ENCFF807MUK, ENCFF814VNS, ENCFF911EMT 4540018253 ENCODE Processing Pipeline 10e37d39231ea052311a54afd5852a13 https://www.encodeproject.org/files/ENCFF688OTD/@@download/ENCFF688OTD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF640XRH bam alignments ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 101 ENCFF117GAX, ENCFF402BMA, ENCFF807MUK 5170791113 ENCODE Processing Pipeline b7b06755917df804ed9c015478a01c65 https://www.encodeproject.org/files/ENCFF640XRH/@@download/ENCFF640XRH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF157ZBY bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF110TON, ENCFF702MIH, ENCFF807MUK 3534063756 ENCODE Processing Pipeline c59e30386f437d622ac74c4b2781bce8 https://www.encodeproject.org/files/ENCFF157ZBY/@@download/ENCFF157ZBY.bam hg19 released borderline replicate concordance duplicate lane review ENCFF054VLG bam alignments ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF392ROX, ENCFF555DZS, ENCFF807MUK 4018055990 ENCODE Processing Pipeline d9e1d4c18dbf6b2d9c83b59c64472e5c https://www.encodeproject.org/files/ENCFF054VLG/@@download/ENCFF054VLG.bam hg19 released borderline replicate concordance duplicate lane review ENCFF653KEU bam alignments ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 100 ENCFF518YRZ, ENCFF807MUK, ENCFF858MFW 3208494892 ENCODE Processing Pipeline cbeebaa3fcd7e3d0b96536fd24b78a41 https://www.encodeproject.org/files/ENCFF653KEU/@@download/ENCFF653KEU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF034SMD bam alignments ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF234XJV, ENCFF321IVY, ENCFF807MUK 4877893897 ENCODE Processing Pipeline 23efe46ed9555f25af0188a5bafe9194 https://www.encodeproject.org/files/ENCFF034SMD/@@download/ENCFF034SMD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF515DIW bam alignments ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF717LYI, ENCFF807MUK, ENCFF871GPP 5176351985 ENCODE Processing Pipeline 23472d86481e48aba8bd058945077839 https://www.encodeproject.org/files/ENCFF515DIW/@@download/ENCFF515DIW.bam hg19 released antibody characterized with exemption missing control alignments ENCFF818HIH bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF485IHI, ENCFF807MUK 470289195 ENCODE Processing Pipeline edd428e000e1c7100391a00ecad0a122 https://www.encodeproject.org/files/ENCFF818HIH/@@download/ENCFF818HIH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF224GTG bam alignments ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF676SIM, ENCFF807MUK 510969265 ENCODE Processing Pipeline 70d1a1fd863afd96c4d038469ab35e96 https://www.encodeproject.org/files/ENCFF224GTG/@@download/ENCFF224GTG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF882XMI bam alignments ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF278AAS, ENCFF662XQN, ENCFF807MUK 4322413820 ENCODE Processing Pipeline 7818b39ae0b59bb3390ddeb6c28c4d52 https://www.encodeproject.org/files/ENCFF882XMI/@@download/ENCFF882XMI.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF358IWC bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF948EZE 1958243461 ENCODE Processing Pipeline 048ec52c66b355366f02126b7ec09dff https://www.encodeproject.org/files/ENCFF358IWC/@@download/ENCFF358IWC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF511GQK bam alignments ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF914FOC 2187227073 ENCODE Processing Pipeline e883bd578ec65c303c9c8ea0cdb85537 https://www.encodeproject.org/files/ENCFF511GQK/@@download/ENCFF511GQK.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF677JZD bam alignments ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF644XXX, ENCFF754KUW, ENCFF807MUK 4544080665 ENCODE Processing Pipeline 056cf7114e1a1651dde3f0d01b2d76d2 https://www.encodeproject.org/files/ENCFF677JZD/@@download/ENCFF677JZD.bam hg19 released antibody characterized with exemption missing control alignments ENCFF040FFN bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 100 ENCFF185PQG, ENCFF807MUK, ENCFF835TQN 7564460055 ENCODE Processing Pipeline 7f482572b7c932eb8ea0aa1a719130d1 https://www.encodeproject.org/files/ENCFF040FFN/@@download/ENCFF040FFN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF432JII bam alignments ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 100 ENCFF132GDV, ENCFF407ICD, ENCFF807MUK 7513364466 ENCODE Processing Pipeline a5e9231f0643b0cd1014ce2adbf3313f https://www.encodeproject.org/files/ENCFF432JII/@@download/ENCFF432JII.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF894SSP bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 76 ENCFF660VHF, ENCFF807MUK 1758647454 ENCODE Processing Pipeline 259adfd59c4f8cb78a75e133fa252df5 https://www.encodeproject.org/files/ENCFF894SSP/@@download/ENCFF894SSP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF177JUU bam alignments ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 76 ENCFF764SMY, ENCFF807MUK 1931799750 ENCODE Processing Pipeline 7fa85543e71c5dcd1f532546c1ed3b51 https://www.encodeproject.org/files/ENCFF177JUU/@@download/ENCFF177JUU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF220WDD bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF501KRI, ENCFF807MUK, ENCFF858NEZ 1222834227 ENCODE Processing Pipeline 286da69d49aa9c58ee4ecce65b327d23 https://www.encodeproject.org/files/ENCFF220WDD/@@download/ENCFF220WDD.bam hg19 released missing genetic modification characterization ENCFF812HBY bam alignments ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF168MKQ, ENCFF807MUK, ENCFF979UQU 1347825539 ENCODE Processing Pipeline a73f3af83f8e71a435db7011b7ce1ee8 https://www.encodeproject.org/files/ENCFF812HBY/@@download/ENCFF812HBY.bam hg19 released missing genetic modification characterization ENCFF938LDN bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF150BYW, ENCFF807MUK 441518031 ENCODE Processing Pipeline 3a1226ff89ef3b357bcf1fca50d503bf https://www.encodeproject.org/files/ENCFF938LDN/@@download/ENCFF938LDN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF425VIX bam alignments ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF453JCJ, ENCFF807MUK 500780765 ENCODE Processing Pipeline df56c2786639b77d9c1414945c8d794b https://www.encodeproject.org/files/ENCFF425VIX/@@download/ENCFF425VIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF446NOX bam alignments ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF445QCX, ENCFF807MUK, ENCFF953YJK 6725034747 ENCODE Processing Pipeline 41c3fd7bf2955767c07b9c4e0b04f6e7 https://www.encodeproject.org/files/ENCFF446NOX/@@download/ENCFF446NOX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF796XBF bam alignments ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF251IZE, ENCFF807MUK, ENCFF871SZT 3662952050 ENCODE Processing Pipeline df5b88debd6310033627adb6358c5a2f https://www.encodeproject.org/files/ENCFF796XBF/@@download/ENCFF796XBF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF176VLC bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF962ZIJ 1661033766 ENCODE Processing Pipeline 67bdc2f43669d69915f7f94e9cbd0833 https://www.encodeproject.org/files/ENCFF176VLC/@@download/ENCFF176VLC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020TIU bam alignments ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF919DQH 1836522205 ENCODE Processing Pipeline 3e9fba1ce65b9c50ebe1afede11f4e6e https://www.encodeproject.org/files/ENCFF020TIU/@@download/ENCFF020TIU.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF924YJA bam alignments ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF243COH, ENCFF653WRQ, ENCFF807MUK 2805422755 ENCODE Processing Pipeline 7a93817ed05cfd2eeacdcde73d55df4c https://www.encodeproject.org/files/ENCFF924YJA/@@download/ENCFF924YJA.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF279BTT bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 76 ENCFF616WVB, ENCFF807MUK 1438647599 ENCODE Processing Pipeline ded5a6b84c1e3dd391ec40f599f43206 https://www.encodeproject.org/files/ENCFF279BTT/@@download/ENCFF279BTT.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF497WGL bam alignments ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 76 ENCFF790RMU, ENCFF807MUK 1847358536 ENCODE Processing Pipeline df8fcb925d83ae5c99ade53f6e2563a2 https://www.encodeproject.org/files/ENCFF497WGL/@@download/ENCFF497WGL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF140YFE bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 76 ENCFF807MUK, ENCFF859HQD 1293816958 ENCODE Processing Pipeline d9ce03fbf5f943503cb620d9f1c14769 https://www.encodeproject.org/files/ENCFF140YFE/@@download/ENCFF140YFE.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF459JPC bam alignments ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 76 ENCFF492HJR, ENCFF807MUK 1251594253 ENCODE Processing Pipeline c24b0be51d51f788c1cab1c5d425b7e8 https://www.encodeproject.org/files/ENCFF459JPC/@@download/ENCFF459JPC.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF150JKN bam alignments ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF554ZQU, ENCFF762GTE, ENCFF807MUK 6365634838 ENCODE Processing Pipeline cbabadb39bde74afb75a3122f0a7188c https://www.encodeproject.org/files/ENCFF150JKN/@@download/ENCFF150JKN.bam hg19 released antibody characterized with exemption missing control alignments ENCFF616BTZ bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 76 ENCFF096ZDV, ENCFF807MUK 1061929131 ENCODE Processing Pipeline db6fce2b46572d3329f15a48b4410305 https://www.encodeproject.org/files/ENCFF616BTZ/@@download/ENCFF616BTZ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851OMU bam alignments ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 76 ENCFF158NYT, ENCFF807MUK 1050260466 ENCODE Processing Pipeline c439c3d26d8e2b1eef81d0710c1039f9 https://www.encodeproject.org/files/ENCFF851OMU/@@download/ENCFF851OMU.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF675RQO bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 4 ENCFF659NRO, ENCFF807MUK, ENCFF826UNN 1370815006 ENCODE Processing Pipeline ae57596e4cb297b40b72bf99b1a69bbf https://www.encodeproject.org/files/ENCFF675RQO/@@download/ENCFF675RQO.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF173TQI bam alignments ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human DNA False 2017-11-08 ENCODE 3 ENCFF508PNU, ENCFF807MUK, ENCFF875NRZ 1418177580 ENCODE Processing Pipeline d6e31c3d3aff86117f0716eb2a14a1bf https://www.encodeproject.org/files/ENCFF173TQI/@@download/ENCFF173TQI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF475DIE bam alignments ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF400DAT, ENCFF668SGW, ENCFF807MUK 2695214539 ENCODE Processing Pipeline a2541a9fa00351c3cc99f41dcd39a44d https://www.encodeproject.org/files/ENCFF475DIE/@@download/ENCFF475DIE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF095RWQ bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVK, ENCFF807MUK 465573513 ENCODE Processing Pipeline dd7ff5f81c2983813c6787d889a56f28 https://www.encodeproject.org/files/ENCFF095RWQ/@@download/ENCFF095RWQ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF089QXR bam alignments ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVP, ENCFF807MUK 1191932553 ENCODE Processing Pipeline deec354e9c65f4ee1184f465ab3f10e8 https://www.encodeproject.org/files/ENCFF089QXR/@@download/ENCFF089QXR.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF669VIL bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQP, ENCFF807MUK 560908136 ENCODE Processing Pipeline 9722e38846acd2ff72ee84053039a502 https://www.encodeproject.org/files/ENCFF669VIL/@@download/ENCFF669VIL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF154IGF bam alignments ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQQ, ENCFF807MUK 758279725 ENCODE Processing Pipeline c3fb83f8ebe687a9c9120dc33303ddab https://www.encodeproject.org/files/ENCFF154IGF/@@download/ENCFF154IGF.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF222PVF bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF871VOL 555315033 ENCODE Processing Pipeline 8189288619623db23dbfd5dc72a17086 https://www.encodeproject.org/files/ENCFF222PVF/@@download/ENCFF222PVF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF203ABU bam alignments ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF582GZQ, ENCFF807MUK 605547827 ENCODE Processing Pipeline 9ec344c64f9d98346c8bbc5f96ce010e https://www.encodeproject.org/files/ENCFF203ABU/@@download/ENCFF203ABU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF552ZVE bam alignments ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF310UBW, ENCFF807MUK, ENCFF834BMO 3846368853 ENCODE Processing Pipeline afd2aca580c07c28dcecd91b895abb75 https://www.encodeproject.org/files/ENCFF552ZVE/@@download/ENCFF552ZVE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF590SXF bam alignments ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF643EOI, ENCFF757IXD, ENCFF807MUK 4052180964 ENCODE Processing Pipeline 5c843608b138bb6aecb3a0173fb82a0a https://www.encodeproject.org/files/ENCFF590SXF/@@download/ENCFF590SXF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF719ANC bam alignments ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF241CFU, ENCFF807MUK, ENCFF962IZX 4562955895 ENCODE Processing Pipeline 2a96e6f9b39d2599a5a7f9b18f7fcae8 https://www.encodeproject.org/files/ENCFF719ANC/@@download/ENCFF719ANC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF750HDH bam alignments ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 100 ENCFF556MUX, ENCFF672XQY, ENCFF807MUK 2970945262 ENCODE Processing Pipeline 1cfac70d4cf21c15becc7e316dc9301c https://www.encodeproject.org/files/ENCFF750HDH/@@download/ENCFF750HDH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF397BSD bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 76 ENCFF675YZO, ENCFF807MUK 1518687912 ENCODE Processing Pipeline 41468a2b3feb7f4a003697b8fef531c6 https://www.encodeproject.org/files/ENCFF397BSD/@@download/ENCFF397BSD.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF738WIY bam alignments ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 76 ENCFF805RHK, ENCFF807MUK 1527130406 ENCODE Processing Pipeline d7d72237624ce5b3e765928ad6b39ae9 https://www.encodeproject.org/files/ENCFF738WIY/@@download/ENCFF738WIY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000XOA bam alignments ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOL 308266449 Peggy Farnham, USC 356245f865915b274feaa5f5152e84d3 https://www.encodeproject.org/files/ENCFF000XOA/@@download/ENCFF000XOA.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XOC bam alignments ENCSR000EVG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XOK 465407677 Peggy Farnham, USC 54e2bfd58b72471d1556f0a258e37a9f https://www.encodeproject.org/files/ENCFF000XOC/@@download/ENCFF000XOC.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF249WJP bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF633ZLO, ENCFF807MUK 1184081598 ENCODE Processing Pipeline 40a07dae2cc02619be8411b2c871947a https://www.encodeproject.org/files/ENCFF249WJP/@@download/ENCFF249WJP.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF126EYL bam alignments ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF762ILJ, ENCFF807MUK 1255869353 ENCODE Processing Pipeline f342f645530e8d0121df4d7ccb8cdb6d https://www.encodeproject.org/files/ENCFF126EYL/@@download/ENCFF126EYL.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF464PKB bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 100 ENCFF393ZLC, ENCFF807MUK, ENCFF911ICF 3257607311 ENCODE Processing Pipeline e12739e65a2d534fce721213e87da6b3 https://www.encodeproject.org/files/ENCFF464PKB/@@download/ENCFF464PKB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF117LCX bam alignments ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 100 ENCFF627YOB, ENCFF678PWC, ENCFF807MUK 4042046673 ENCODE Processing Pipeline 776297779d610ab370631e785f4cde17 https://www.encodeproject.org/files/ENCFF117LCX/@@download/ENCFF117LCX.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF479XRX bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 50 ENCFF652IDC, ENCFF807MUK 1138556853 ENCODE Processing Pipeline f6b028f702cb3f8cec326d38f8b66fdd https://www.encodeproject.org/files/ENCFF479XRX/@@download/ENCFF479XRX.bam hg19 released low read depth, missing genetic modification characterization ENCFF783CXK bam alignments ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 50 ENCFF516GOL, ENCFF807MUK 864675233 ENCODE Processing Pipeline 0cb4ad96e32a5ae8bd5d109f04fe1054 https://www.encodeproject.org/files/ENCFF783CXK/@@download/ENCFF783CXK.bam hg19 released low read depth, missing genetic modification characterization ENCFF950ZBS bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF263DDP, ENCFF807MUK, ENCFF861XUI 2587570927 ENCODE Processing Pipeline e792c277302c3b16f675d829839cf135 https://www.encodeproject.org/files/ENCFF950ZBS/@@download/ENCFF950ZBS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF699MBA bam alignments ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF023QAR, ENCFF785LRF, ENCFF807MUK 3035032348 ENCODE Processing Pipeline f62b4a1207f05ca657fbd0db8356c5ed https://www.encodeproject.org/files/ENCFF699MBA/@@download/ENCFF699MBA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF488CVL bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF987WCU 981547841 ENCODE Processing Pipeline 010f5a39443b4dd4fcaa8b4585a6c7d3 https://www.encodeproject.org/files/ENCFF488CVL/@@download/ENCFF488CVL.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF826XVE bam alignments ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF697GAP, ENCFF713DPD, ENCFF807MUK 1812676020 ENCODE Processing Pipeline d5742737643a0c14652790a1984e395a https://www.encodeproject.org/files/ENCFF826XVE/@@download/ENCFF826XVE.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF787OQV bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 100 ENCFF305XXH, ENCFF433QIM, ENCFF807MUK 3421135760 ENCODE Processing Pipeline 0414cd62d04d70cfd5bd5839fdc42c44 https://www.encodeproject.org/files/ENCFF787OQV/@@download/ENCFF787OQV.bam hg19 released mild to moderate bottlenecking ENCFF437AZE bam alignments ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 100 ENCFF442RZV, ENCFF807MUK, ENCFF845GWE 3930183507 ENCODE Processing Pipeline df145612e540ba293db33ee3c8bea95f https://www.encodeproject.org/files/ENCFF437AZE/@@download/ENCFF437AZE.bam hg19 released mild to moderate bottlenecking ENCFF340TMD bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF520VNB, ENCFF807MUK, ENCFF951RZS 3024751188 ENCODE Processing Pipeline 39ae9413b1083b09eed0f434351c83ec https://www.encodeproject.org/files/ENCFF340TMD/@@download/ENCFF340TMD.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF911YIA bam alignments ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF295MZS, ENCFF505FEG, ENCFF807MUK 4493759332 ENCODE Processing Pipeline 685037cd95a87959467be35da6237591 https://www.encodeproject.org/files/ENCFF911YIA/@@download/ENCFF911YIA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF215XQU bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF946FEX 637696853 ENCODE Processing Pipeline 8a70dce185c0e757e6b65fb9ced5b62f https://www.encodeproject.org/files/ENCFF215XQU/@@download/ENCFF215XQU.bam hg19 released borderline replicate concordance, low read depth ENCFF191IPI bam alignments ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF807MUK, ENCFF953UBF 1264815384 ENCODE Processing Pipeline 5ca873319fb3138b3fcbc17c75107a5d https://www.encodeproject.org/files/ENCFF191IPI/@@download/ENCFF191IPI.bam hg19 released borderline replicate concordance, low read depth ENCFF775KLX bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 50 ENCFF740WEF, ENCFF807MUK, ENCFF959EDS 636313870 ENCODE Processing Pipeline 5a1a33011b9c6644d347c3183b597cf9 https://www.encodeproject.org/files/ENCFF775KLX/@@download/ENCFF775KLX.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF538HUN bam alignments ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 50 ENCFF282GDI, ENCFF316FIQ, ENCFF807MUK 899146656 ENCODE Processing Pipeline 22e983fc8763463455df870e9cd8d775 https://www.encodeproject.org/files/ENCFF538HUN/@@download/ENCFF538HUN.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF096KAF bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF013LUW, ENCFF807MUK 2439519197 ENCODE Processing Pipeline 18e4ae7b92687ee3a32f5d2ab3371612 https://www.encodeproject.org/files/ENCFF096KAF/@@download/ENCFF096KAF.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF269HDS bam alignments ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF268EDU, ENCFF775QYL, ENCFF807MUK 1536194815 ENCODE Processing Pipeline aa574191f632ed349e92836cfef9d5f6 https://www.encodeproject.org/files/ENCFF269HDS/@@download/ENCFF269HDS.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF367GNZ bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF071LVJ, ENCFF807MUK, ENCFF932LBZ 4524258638 ENCODE Processing Pipeline 513ead14d98094f66e727b294a12ecee https://www.encodeproject.org/files/ENCFF367GNZ/@@download/ENCFF367GNZ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF408VAT bam alignments ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF159PHG, ENCFF216PTG, ENCFF807MUK 4822326242 ENCODE Processing Pipeline 178794ae702ff5c695e48edc2466e038 https://www.encodeproject.org/files/ENCFF408VAT/@@download/ENCFF408VAT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF434TTY bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 50 ENCFF229EAT, ENCFF733OMC, ENCFF807MUK 1137270840 ENCODE Processing Pipeline eb7d86a4e25f61c00480ae998ce6d8db https://www.encodeproject.org/files/ENCFF434TTY/@@download/ENCFF434TTY.bam hg19 released missing genetic modification characterization ENCFF846HRR bam alignments ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 50 ENCFF112KAJ, ENCFF807MUK, ENCFF848CPR 1122525273 ENCODE Processing Pipeline 7ca796800ed398eafedf3d99b5fb0808 https://www.encodeproject.org/files/ENCFF846HRR/@@download/ENCFF846HRR.bam hg19 released missing genetic modification characterization ENCFF000QMN bam alignments ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMZ 818288856 Richard Myers, HAIB 92dcebf0b6f13c2d63f901ade95ab128 https://www.encodeproject.org/files/ENCFF000QMN/@@download/ENCFF000QMN.bam hg19 released biological replicates with identical biosample ENCFF000QMQ bam alignments ENCSR000BUJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNC 1844079539 Richard Myers, HAIB 8e3d5d9ddc60fe9baf0f4e2d703b6189 https://www.encodeproject.org/files/ENCFF000QMQ/@@download/ENCFF000QMQ.bam hg19 released biological replicates with identical biosample ENCFF000QME bam alignments ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMU 1724569241 Richard Myers, HAIB 26d342da36723366b1915118a7560859 https://www.encodeproject.org/files/ENCFF000QME/@@download/ENCFF000QME.bam hg19 released biological replicates with identical biosample ENCFF000QMI bam alignments ENCSR000BUI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMS 856847259 Richard Myers, HAIB 30a19ffde77b0ce2ff000b22fb9df780 https://www.encodeproject.org/files/ENCFF000QMI/@@download/ENCFF000QMI.bam hg19 released biological replicates with identical biosample ENCFF130LXW bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF554YBC, ENCFF774HWW, ENCFF807MUK 3907217655 ENCODE Processing Pipeline 0a6eeb5bdfa341ecd7f77fac60df2472 https://www.encodeproject.org/files/ENCFF130LXW/@@download/ENCFF130LXW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF975JDZ bam alignments ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MLK, ENCFF807MUK, ENCFF846CXS 5366097869 ENCODE Processing Pipeline c3ea86c05a721f4af488b01317885fbf https://www.encodeproject.org/files/ENCFF975JDZ/@@download/ENCFF975JDZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF723GWC bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF050CTT, ENCFF641CWU, ENCFF807MUK 4074997723 ENCODE Processing Pipeline 02b97dd0ae5ffb3a19916e5593946dbc https://www.encodeproject.org/files/ENCFF723GWC/@@download/ENCFF723GWC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF041AGD bam alignments ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF013IOZ, ENCFF204JBE, ENCFF807MUK 4853159560 ENCODE Processing Pipeline 46a1a623b4a11351e0366b7bb49119c0 https://www.encodeproject.org/files/ENCFF041AGD/@@download/ENCFF041AGD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF654MCA bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF169UAL, ENCFF747KWI, ENCFF807MUK 5520658527 ENCODE Processing Pipeline a79a07fb14db87f2f82962e6eeeaefc1 https://www.encodeproject.org/files/ENCFF654MCA/@@download/ENCFF654MCA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF410VAL bam alignments ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF623BWW, ENCFF753QHT, ENCFF807MUK 6465416385 ENCODE Processing Pipeline eb9f7724834f5f461f1c5f2a4ae13254 https://www.encodeproject.org/files/ENCFF410VAL/@@download/ENCFF410VAL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF663MHL bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 76 ENCFF807MUK, ENCFF810LAW 589011857 ENCODE Processing Pipeline 84d701e6e46d45a149d8f058c19830d3 https://www.encodeproject.org/files/ENCFF663MHL/@@download/ENCFF663MHL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF692DPL bam alignments ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 76 ENCFF344GQE, ENCFF807MUK 892522468 ENCODE Processing Pipeline 8e13643e0b95d743cf87463d510a4c67 https://www.encodeproject.org/files/ENCFF692DPL/@@download/ENCFF692DPL.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF475NYJ bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 100 ENCFF245FGQ, ENCFF687NYU, ENCFF807MUK 3968198949 ENCODE Processing Pipeline 27491f445c5a0a0b904b009cddab79b3 https://www.encodeproject.org/files/ENCFF475NYJ/@@download/ENCFF475NYJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF218RCB bam alignments ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 3 101 ENCFF054RXK, ENCFF807MUK, ENCFF910ICX 4573626630 ENCODE Processing Pipeline 500fc8a2de382c1f57bc866e72a4823b https://www.encodeproject.org/files/ENCFF218RCB/@@download/ENCFF218RCB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF069GGB bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF203MXC, ENCFF454FRC, ENCFF807MUK 4262454189 ENCODE Processing Pipeline 8c0b481c238b9a79302e218d2f32c71f https://www.encodeproject.org/files/ENCFF069GGB/@@download/ENCFF069GGB.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF076TDR bam alignments ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF021DVV, ENCFF804QYW, ENCFF807MUK 4838364981 ENCODE Processing Pipeline ada73eb224f97ed0790302ce10bc42e1 https://www.encodeproject.org/files/ENCFF076TDR/@@download/ENCFF076TDR.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF614KAI bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF594DJD, ENCFF807MUK 1038047267 ENCODE Processing Pipeline 2d49c5e98c92a30891b6e465c5a497b9 https://www.encodeproject.org/files/ENCFF614KAI/@@download/ENCFF614KAI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF717AFR bam alignments ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF059UOO, ENCFF807MUK 1295114250 ENCODE Processing Pipeline 70947b298f661756bcf7c6ca995b5a6e https://www.encodeproject.org/files/ENCFF717AFR/@@download/ENCFF717AFR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF881DRR bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXL, ENCFF807MUK 624409682 ENCODE Processing Pipeline 94d039fea84c690b690bf0236036e06a https://www.encodeproject.org/files/ENCFF881DRR/@@download/ENCFF881DRR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF240KTH bam alignments ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXK, ENCFF807MUK 742163027 ENCODE Processing Pipeline 359b9420556a662dc3edb0d43473993d https://www.encodeproject.org/files/ENCFF240KTH/@@download/ENCFF240KTH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF837QKV bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF148LLM, ENCFF807MUK 823240766 ENCODE Processing Pipeline 619184733e70810c450003543a87cbd0 https://www.encodeproject.org/files/ENCFF837QKV/@@download/ENCFF837QKV.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF447TYF bam alignments ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF444VXB, ENCFF807MUK 1228720682 ENCODE Processing Pipeline d143a470edb4f209f216e736148a3fe6 https://www.encodeproject.org/files/ENCFF447TYF/@@download/ENCFF447TYF.bam hg19 released missing genetic modification characterization characterization(s) pending review ENCFF031HZQ bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF575MKR, ENCFF807MUK, ENCFF902ARM 3801987378 ENCODE Processing Pipeline 522aac43f90414e9d49037d2a89d43f0 https://www.encodeproject.org/files/ENCFF031HZQ/@@download/ENCFF031HZQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF097LQF bam alignments ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF167UWT, ENCFF784CYN, ENCFF807MUK 4723478185 ENCODE Processing Pipeline 0b679ad0e007a7c6c4004873d8a73cc8 https://www.encodeproject.org/files/ENCFF097LQF/@@download/ENCFF097LQF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF651ADF bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF896GER, ENCFF992BVX 4686735249 ENCODE Processing Pipeline 777329afda35007a3314a56d9d6e95cf https://www.encodeproject.org/files/ENCFF651ADF/@@download/ENCFF651ADF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF466IFZ bam alignments ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022LNW, ENCFF807MUK, ENCFF915HPV 6340733617 ENCODE Processing Pipeline 679b1c53902ea0cfb17f81cda5c1f577 https://www.encodeproject.org/files/ENCFF466IFZ/@@download/ENCFF466IFZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF683LTQ bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 76 ENCFF088SMS, ENCFF807MUK 1024351817 ENCODE Processing Pipeline 80d11edba0ecfc6535cfd1bf843328ce https://www.encodeproject.org/files/ENCFF683LTQ/@@download/ENCFF683LTQ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF195PDT bam alignments ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 76 ENCFF698KPI, ENCFF807MUK 991369735 ENCODE Processing Pipeline 865b23ed8c9a5ca4e4e9e50d384a7c90 https://www.encodeproject.org/files/ENCFF195PDT/@@download/ENCFF195PDT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF468GSD bam alignments ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 76 ENCFF807MUK, ENCFF948EIJ 1753601314 ENCODE Processing Pipeline 4ebf07e71ed25120bb9e1d41cc7c1cc1 https://www.encodeproject.org/files/ENCFF468GSD/@@download/ENCFF468GSD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF303UMK bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF035FBQ, ENCFF761HWG, ENCFF807MUK 4719497401 ENCODE Processing Pipeline 79a319d4693e7c059ba18e5b1d881b37 https://www.encodeproject.org/files/ENCFF303UMK/@@download/ENCFF303UMK.bam hg19 released borderline replicate concordance ENCFF486FNI bam alignments ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF087IYL, ENCFF467WHQ, ENCFF807MUK 4563001819 ENCODE Processing Pipeline 9f06e22698778ca871a1bc8210278d43 https://www.encodeproject.org/files/ENCFF486FNI/@@download/ENCFF486FNI.bam hg19 released borderline replicate concordance ENCFF452GJT bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEV, ENCFF807MUK 810983984 ENCODE Processing Pipeline 692d2b6bdf16f4491f5efec6888929fb https://www.encodeproject.org/files/ENCFF452GJT/@@download/ENCFF452GJT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF713XOH bam alignments ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFC, ENCFF807MUK 868558871 ENCODE Processing Pipeline c45086b93402ebb84c21c715f57e3669 https://www.encodeproject.org/files/ENCFF713XOH/@@download/ENCFF713XOH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF068GSY bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF076OOL, ENCFF807MUK, ENCFF864BVL 5020529665 ENCODE Processing Pipeline 0fc2e457713c8ef2aac5a34f2ec7043a https://www.encodeproject.org/files/ENCFF068GSY/@@download/ENCFF068GSY.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF364DBG bam alignments ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF456GTI, ENCFF725NQI, ENCFF807MUK 5080294554 ENCODE Processing Pipeline e9267eb3beca6c7e3a2ee2f65bebbf58 https://www.encodeproject.org/files/ENCFF364DBG/@@download/ENCFF364DBG.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF789MAE bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF568WKI, ENCFF807MUK 1265055721 ENCODE Processing Pipeline 7c3f577017337dfc877f035b28801b4b https://www.encodeproject.org/files/ENCFF789MAE/@@download/ENCFF789MAE.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF005ZLD bam alignments ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF807MUK, ENCFF925BQC 1504758971 ENCODE Processing Pipeline a55a079f59b3c5f3bbccb5e282e6647a https://www.encodeproject.org/files/ENCFF005ZLD/@@download/ENCFF005ZLD.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF607GOG bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHX, ENCFF807MUK 183423489 ENCODE Processing Pipeline b4ba9ee8399ed4012d5a2ff12000c928 https://www.encodeproject.org/files/ENCFF607GOG/@@download/ENCFF607GOG.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF412PHP bam alignments ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HIA, ENCFF807MUK 631731985 ENCODE Processing Pipeline 8b6466997936d72b8d187b8dcc3543c0 https://www.encodeproject.org/files/ENCFF412PHP/@@download/ENCFF412PHP.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF007CIX bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF614UID, ENCFF807MUK 414952611 ENCODE Processing Pipeline ac1547844dd566444921eb7003201f74 https://www.encodeproject.org/files/ENCFF007CIX/@@download/ENCFF007CIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF923FKY bam alignments ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF178ZJY, ENCFF807MUK 455234119 ENCODE Processing Pipeline d9a7b1e4ec18993b68dc8f99a8e35487 https://www.encodeproject.org/files/ENCFF923FKY/@@download/ENCFF923FKY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF014SFP bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 100 ENCFF405EAB, ENCFF695OJN, ENCFF807MUK 2980516037 ENCODE Processing Pipeline 712d94deca661091728cc0788bd0f6a0 https://www.encodeproject.org/files/ENCFF014SFP/@@download/ENCFF014SFP.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF407LUN bam alignments ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 100 ENCFF097JYZ, ENCFF499VMV, ENCFF807MUK 4427847708 ENCODE Processing Pipeline d306f46b0e1467cd3bd7a056ada8b4c3 https://www.encodeproject.org/files/ENCFF407LUN/@@download/ENCFF407LUN.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF002JBN bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 76 ENCFF503DWZ, ENCFF807MUK 1690825859 ENCODE Processing Pipeline 0c900a9e47cf84a0a85f8aa5c87c09d7 https://www.encodeproject.org/files/ENCFF002JBN/@@download/ENCFF002JBN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF812AFI bam alignments ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 76 ENCFF414QOO, ENCFF807MUK 1763252877 ENCODE Processing Pipeline 58200b869892093104beadffb5588995 https://www.encodeproject.org/files/ENCFF812AFI/@@download/ENCFF812AFI.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF361UHD bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF063SWH, ENCFF660BZO, ENCFF807MUK 3412103451 ENCODE Processing Pipeline 8b38278490cda05269e5fc74f525bc04 https://www.encodeproject.org/files/ENCFF361UHD/@@download/ENCFF361UHD.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF665CMT bam alignments ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF442RWO, ENCFF807MUK, ENCFF895TQT 7966704087 ENCODE Processing Pipeline 385208c889ed361ea7b48ae36da7260f https://www.encodeproject.org/files/ENCFF665CMT/@@download/ENCFF665CMT.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF651TWV bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF621DBV, ENCFF661FBG, ENCFF807MUK 3733349439 ENCODE Processing Pipeline 07f164d3f977c7b407246b4c1ee363e9 https://www.encodeproject.org/files/ENCFF651TWV/@@download/ENCFF651TWV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF193OQZ bam alignments ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF380XRO, ENCFF807MUK, ENCFF883WMZ 3715643923 ENCODE Processing Pipeline fa0f74a98dc01431bc6d4cc31a18cfe8 https://www.encodeproject.org/files/ENCFF193OQZ/@@download/ENCFF193OQZ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF326PVE bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 100 ENCFF059WXQ, ENCFF281DBV, ENCFF807MUK 4512528105 ENCODE Processing Pipeline 07023c2f2b4c4ff39db47cd3f099f336 https://www.encodeproject.org/files/ENCFF326PVE/@@download/ENCFF326PVE.bam hg19 released ENCFF008NUZ bam alignments ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 100 ENCFF402TFM, ENCFF612WBL, ENCFF807MUK 5512927162 ENCODE Processing Pipeline 2f2352bddc04359dbbc341871023918a https://www.encodeproject.org/files/ENCFF008NUZ/@@download/ENCFF008NUZ.bam hg19 released ENCFF703ULA bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YVM, ENCFF807MUK 865762620 ENCODE Processing Pipeline 2856548563ffe53572132e104a6157f2 https://www.encodeproject.org/files/ENCFF703ULA/@@download/ENCFF703ULA.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF366ROL bam alignments ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YVO, ENCFF807MUK 917425721 ENCODE Processing Pipeline 70a2ce4bb716921a10e2ff2f29b96abc https://www.encodeproject.org/files/ENCFF366ROL/@@download/ENCFF366ROL.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF094HJZ bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF539JMO, ENCFF807MUK, ENCFF981GJX 5163345211 ENCODE Processing Pipeline 1b96da0a7b0b1d8c45313e4717367908 https://www.encodeproject.org/files/ENCFF094HJZ/@@download/ENCFF094HJZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF363LYG bam alignments ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF549IKB, ENCFF659PCT, ENCFF807MUK 5036563681 ENCODE Processing Pipeline b3f0d41dd913df5bb21b6622b5c09d46 https://www.encodeproject.org/files/ENCFF363LYG/@@download/ENCFF363LYG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF494NSZ bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 100 ENCFF042QKO, ENCFF257UIV, ENCFF807MUK 3695624014 ENCODE Processing Pipeline e5c11b2d7a99d9623da722c267be017e https://www.encodeproject.org/files/ENCFF494NSZ/@@download/ENCFF494NSZ.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF327GHK bam alignments ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 100 ENCFF064WKY, ENCFF610FSQ, ENCFF807MUK 5073997520 ENCODE Processing Pipeline 551b3c534f03acbb93affb004a04b0af https://www.encodeproject.org/files/ENCFF327GHK/@@download/ENCFF327GHK.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF558LSV bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 36 ENCFF002EWP, ENCFF807MUK 742441469 ENCODE Processing Pipeline 128c1d68ff9da53fbb32ef7a85abdafc https://www.encodeproject.org/files/ENCFF558LSV/@@download/ENCFF558LSV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF193XPY bam alignments ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 36 ENCFF002EWO, ENCFF807MUK 957621777 ENCODE Processing Pipeline 38bd003c8b0ac6f762e4f6741959950d https://www.encodeproject.org/files/ENCFF193XPY/@@download/ENCFF193XPY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF761PRG bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF011PMD, ENCFF402LAV, ENCFF807MUK 3705739740 ENCODE Processing Pipeline 9952f108b1df3a843485cd92c5a9d4f0 https://www.encodeproject.org/files/ENCFF761PRG/@@download/ENCFF761PRG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF288CMG bam alignments ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF192OJP, ENCFF291SHJ, ENCFF807MUK 7020213110 ENCODE Processing Pipeline d295fdfe0e01f374d49b6ac7d7d22157 https://www.encodeproject.org/files/ENCFF288CMG/@@download/ENCFF288CMG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF628LZV bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 100 ENCFF732UEM, ENCFF807MUK, ENCFF943GTQ 6164252473 ENCODE Processing Pipeline 14e36a280653f0d5b379f65a87053b80 https://www.encodeproject.org/files/ENCFF628LZV/@@download/ENCFF628LZV.bam hg19 released file validation error mismatched file status ENCFF187GJJ bam alignments ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 100 ENCFF736GCR, ENCFF807MUK, ENCFF908NBF 6195006698 ENCODE Processing Pipeline 82b3e0c7cbf440173e31f9026e35c69b https://www.encodeproject.org/files/ENCFF187GJJ/@@download/ENCFF187GJJ.bam hg19 released file validation error mismatched file status ENCFF325QRE bam alignments ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSJ, ENCFF807MUK 432574897 ENCODE Processing Pipeline f778b82583b152339cc56642ecd8b1f8 https://www.encodeproject.org/files/ENCFF325QRE/@@download/ENCFF325QRE.bam hg19 released low read length insufficient read depth control extremely low read depth ENCFF019LID bam alignments ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 76 ENCFF342FJM, ENCFF807MUK 568668209 ENCODE Processing Pipeline e943d4a363baee132f95776fade5833e https://www.encodeproject.org/files/ENCFF019LID/@@download/ENCFF019LID.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF586HZR bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF316GJN, ENCFF807MUK, ENCFF911HHR 4736498895 ENCODE Processing Pipeline 0773eca57e0bb62d8513bd6a68f980d1 https://www.encodeproject.org/files/ENCFF586HZR/@@download/ENCFF586HZR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF746OBW bam alignments ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF333HZB, ENCFF564WFC, ENCFF807MUK 6156622060 ENCODE Processing Pipeline 8563b5127f99c47673c7e8b24ab0e5a9 https://www.encodeproject.org/files/ENCFF746OBW/@@download/ENCFF746OBW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF170JGP bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF470VSN, ENCFF752RBW, ENCFF807MUK 4464408788 ENCODE Processing Pipeline 6e8f8b90bacfa3c72753a745fe53b5f3 https://www.encodeproject.org/files/ENCFF170JGP/@@download/ENCFF170JGP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF324LWS bam alignments ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF108NAI, ENCFF459YDW, ENCFF807MUK 5343523636 ENCODE Processing Pipeline 334036b44b797ce623f055acbf3785e3 https://www.encodeproject.org/files/ENCFF324LWS/@@download/ENCFF324LWS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF750PRY bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF179CUG, ENCFF807MUK, ENCFF999JFC 3686397848 ENCODE Processing Pipeline 82ecb4ff1c574617961c8c50cefe8934 https://www.encodeproject.org/files/ENCFF750PRY/@@download/ENCFF750PRY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF256NAK bam alignments ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF053VVJ, ENCFF474NQE, ENCFF807MUK 5742206415 ENCODE Processing Pipeline 2f98db7e03b5838d58c7012e2529c161 https://www.encodeproject.org/files/ENCFF256NAK/@@download/ENCFF256NAK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF621GUP bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF002EWG, ENCFF807MUK 782896574 ENCODE Processing Pipeline fdfe928eab43a8ed1923060998354902 https://www.encodeproject.org/files/ENCFF621GUP/@@download/ENCFF621GUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF708LOC bam alignments ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF002EWF, ENCFF807MUK 588455376 ENCODE Processing Pipeline f4a3889c1f863acac74a4bfb48cc77ba https://www.encodeproject.org/files/ENCFF708LOC/@@download/ENCFF708LOC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF049AQB bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 100 ENCFF006IUL, ENCFF060IWY, ENCFF807MUK 5641131612 ENCODE Processing Pipeline d226e8966f78346b7d416bea586f86cc https://www.encodeproject.org/files/ENCFF049AQB/@@download/ENCFF049AQB.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF950TOD bam alignments ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 100 ENCFF359OBA, ENCFF452DQU, ENCFF807MUK 3565488678 ENCODE Processing Pipeline 84851c76cba7adb445363f0207525424 https://www.encodeproject.org/files/ENCFF950TOD/@@download/ENCFF950TOD.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF557TAR bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 36 ENCFF210PXS, ENCFF525AYL, ENCFF807MUK 1943985687 ENCODE Processing Pipeline 6619db585acbec4be37e4f0e751bc190 https://www.encodeproject.org/files/ENCFF557TAR/@@download/ENCFF557TAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF469DXQ bam alignments ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 30 ENCFF761GFN, ENCFF807MUK 452635177 ENCODE Processing Pipeline d9c08859984f91f3eeffe464dd991b70 https://www.encodeproject.org/files/ENCFF469DXQ/@@download/ENCFF469DXQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF078DNG bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPV, ENCFF002DTR, ENCFF807MUK 4376684776 ENCODE Processing Pipeline 55afd8751f6de7bc29e52cc229bccbe2 https://www.encodeproject.org/files/ENCFF078DNG/@@download/ENCFF078DNG.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF086KKL bam alignments ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPW, ENCFF002EGJ, ENCFF807MUK 3856442292 ENCODE Processing Pipeline 6af75b0c851f1b7fc0c6c1692779e2d0 https://www.encodeproject.org/files/ENCFF086KKL/@@download/ENCFF086KKL.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF970QPM bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF333NBD, ENCFF774IKE, ENCFF807MUK 3095451668 ENCODE Processing Pipeline 62e8f34816d302e69304cf65c1e78092 https://www.encodeproject.org/files/ENCFF970QPM/@@download/ENCFF970QPM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF903YHB bam alignments ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF406DCD, ENCFF549SRV, ENCFF807MUK 3442600053 ENCODE Processing Pipeline 9ea33541f2e867f265617d5ba507d413 https://www.encodeproject.org/files/ENCFF903YHB/@@download/ENCFF903YHB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF433CVZ bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 100 ENCFF354HNG, ENCFF733YZZ, ENCFF807MUK 5417868572 ENCODE Processing Pipeline fa39a447cf435dde7399829dfa11b291 https://www.encodeproject.org/files/ENCFF433CVZ/@@download/ENCFF433CVZ.bam hg19 released ENCFF557MNR bam alignments ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 3 100 ENCFF175HFF, ENCFF543HLG, ENCFF807MUK 6789361590 ENCODE Processing Pipeline 59ef49e3d5d0ae4a0004d40d818eaf8b https://www.encodeproject.org/files/ENCFF557MNR/@@download/ENCFF557MNR.bam hg19 released ENCFF424HAO bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF071KJL, ENCFF764PLC, ENCFF807MUK 4236108379 ENCODE Processing Pipeline 789f938a3492f82cc0f62877f3ebbc84 https://www.encodeproject.org/files/ENCFF424HAO/@@download/ENCFF424HAO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF541OLW bam alignments ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF445ZKX, ENCFF804SFA, ENCFF807MUK 4027463874 ENCODE Processing Pipeline 69f0a0325e615463115bafe2372317a0 https://www.encodeproject.org/files/ENCFF541OLW/@@download/ENCFF541OLW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF771VVI bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIY, ENCFF002EJA, ENCFF807MUK 3981271768 ENCODE Processing Pipeline 8c78f1ee6e2cb7ffa286be36d3b8cbad https://www.encodeproject.org/files/ENCFF771VVI/@@download/ENCFF771VVI.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF660NZN bam alignments ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJG, ENCFF002EJJ, ENCFF807MUK 4558509570 ENCODE Processing Pipeline 46f547d14ba6740b4490dec14f3ccf7f https://www.encodeproject.org/files/ENCFF660NZN/@@download/ENCFF660NZN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF643ZMZ bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 100 ENCFF638EKM, ENCFF649RQR, ENCFF807MUK 3813651148 ENCODE Processing Pipeline c932c4e3ade463ea547efb2335f22b9a https://www.encodeproject.org/files/ENCFF643ZMZ/@@download/ENCFF643ZMZ.bam hg19 released antibody characterized with exemption ENCFF849SYR bam alignments ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 100 ENCFF239IAD, ENCFF807MUK, ENCFF888IQK 6030464006 ENCODE Processing Pipeline eb626643681b8fde2ac8690bde557394 https://www.encodeproject.org/files/ENCFF849SYR/@@download/ENCFF849SYR.bam hg19 released antibody characterized with exemption ENCFF891JES bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 100 ENCFF542CMJ, ENCFF780YRV, ENCFF807MUK 5876528880 ENCODE Processing Pipeline 48bf8e074130680450cb3ec3d7aca02c https://www.encodeproject.org/files/ENCFF891JES/@@download/ENCFF891JES.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF614AZS bam alignments ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 100 ENCFF548RTA, ENCFF807MUK, ENCFF916QKA 5772332460 ENCODE Processing Pipeline d6d9ec4b67a0b22dc9bbd4395905b9d0 https://www.encodeproject.org/files/ENCFF614AZS/@@download/ENCFF614AZS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF530XAQ bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF034CSX, ENCFF807MUK, ENCFF919QDE 3005093588 ENCODE Processing Pipeline 44d7f71b8900a0c78246076f20884ab7 https://www.encodeproject.org/files/ENCFF530XAQ/@@download/ENCFF530XAQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF233IID bam alignments ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF517OWM, ENCFF807MUK, ENCFF871YPD 3939101728 ENCODE Processing Pipeline d3d4491d150a2fa7c1be3db71c65b56c https://www.encodeproject.org/files/ENCFF233IID/@@download/ENCFF233IID.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF107MLR bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 100 ENCFF351UCM, ENCFF393ANW, ENCFF807MUK 4433146397 ENCODE Processing Pipeline d77f9d8c8b50044841ffefda1a577092 https://www.encodeproject.org/files/ENCFF107MLR/@@download/ENCFF107MLR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF301KAZ bam alignments ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 100 ENCFF391EFO, ENCFF493AAY, ENCFF807MUK 4131118465 ENCODE Processing Pipeline b78d7332c698bf6cf957c67c2ab908eb https://www.encodeproject.org/files/ENCFF301KAZ/@@download/ENCFF301KAZ.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF456BBA bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIW, ENCFF002EIX, ENCFF807MUK 7563628180 ENCODE Processing Pipeline 681aa4751094ee3a8a9ab42e6a82277d https://www.encodeproject.org/files/ENCFF456BBA/@@download/ENCFF456BBA.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF608THC bam alignments ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIU, ENCFF002EIV, ENCFF807MUK 6472081985 ENCODE Processing Pipeline d6d1eeaac1c7fb5c2f5c973e0cb10d7e https://www.encodeproject.org/files/ENCFF608THC/@@download/ENCFF608THC.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF060NHQ bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF076GRK, ENCFF574XTS, ENCFF807MUK 4649821319 ENCODE Processing Pipeline 201b0c46f300364ca3ac7ddd816c8ff6 https://www.encodeproject.org/files/ENCFF060NHQ/@@download/ENCFF060NHQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF495BAQ bam alignments ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF131OXT, ENCFF565BCY, ENCFF807MUK 4601395568 ENCODE Processing Pipeline 1e2e5fad06a66762f1c46bdee116d183 https://www.encodeproject.org/files/ENCFF495BAQ/@@download/ENCFF495BAQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF365IHN bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF755SKN, ENCFF807MUK, ENCFF895EJG 5271853893 ENCODE Processing Pipeline 45b9a4b76205259b49c1b5a60ffcc487 https://www.encodeproject.org/files/ENCFF365IHN/@@download/ENCFF365IHN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF014YFY bam alignments ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF301ONT, ENCFF512LPA, ENCFF807MUK 5761873193 ENCODE Processing Pipeline 6aea6c5a939e98f2689b1626e5757cc4 https://www.encodeproject.org/files/ENCFF014YFY/@@download/ENCFF014YFY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF264RGM bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDZ, ENCFF807MUK 731670015 ENCODE Processing Pipeline 993d648e7352d0140baadf0e7743cecc https://www.encodeproject.org/files/ENCFF264RGM/@@download/ENCFF264RGM.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF969RVW bam alignments ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EED, ENCFF807MUK 620226574 ENCODE Processing Pipeline dbe2309e779cf959f45d22e0d74e2e7c https://www.encodeproject.org/files/ENCFF969RVW/@@download/ENCFF969RVW.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF332BKR bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF301KVJ, ENCFF460ZWD, ENCFF807MUK 3436153770 ENCODE Processing Pipeline 3e25a796656f49149a84a6f96ccd6806 https://www.encodeproject.org/files/ENCFF332BKR/@@download/ENCFF332BKR.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF306NYS bam alignments ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF685UUM, ENCFF807MUK, ENCFF828VUL 4997391492 ENCODE Processing Pipeline 3ac970829465a08bc3dcf2003b83279c https://www.encodeproject.org/files/ENCFF306NYS/@@download/ENCFF306NYS.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF048WFD bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 36 ENCFF807MUK, ENCFF935HPE 800386709 ENCODE Processing Pipeline 681ff20cbb967d29de415e482fcebf3e https://www.encodeproject.org/files/ENCFF048WFD/@@download/ENCFF048WFD.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF275KSQ bam alignments ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 36 ENCFF657CSM, ENCFF807MUK 1037300496 ENCODE Processing Pipeline 6ba6e416cff1c25ceb8262435e19e6fd https://www.encodeproject.org/files/ENCFF275KSQ/@@download/ENCFF275KSQ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF924QCM bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF231MZY, ENCFF474UCX, ENCFF807MUK 3137706704 ENCODE Processing Pipeline 7160eaf831266475493bc13eadca1a07 https://www.encodeproject.org/files/ENCFF924QCM/@@download/ENCFF924QCM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF970AJY bam alignments ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF451TRG, ENCFF466VMF, ENCFF807MUK 3769252695 ENCODE Processing Pipeline 2750a888ddb892de4d647af935c05c88 https://www.encodeproject.org/files/ENCFF970AJY/@@download/ENCFF970AJY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF736UXD bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 100 ENCFF592CBD, ENCFF807MUK, ENCFF970GQF 4466230069 ENCODE Processing Pipeline 391985b0e6a90cd0908214e45b881fbe https://www.encodeproject.org/files/ENCFF736UXD/@@download/ENCFF736UXD.bam hg19 released mild to moderate bottlenecking ENCFF648SPM bam alignments ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 100 ENCFF202EJB, ENCFF807MUK, ENCFF914KKF 4908091092 ENCODE Processing Pipeline ecc8041b14fc2608047e90ad53a7d43c https://www.encodeproject.org/files/ENCFF648SPM/@@download/ENCFF648SPM.bam hg19 released mild to moderate bottlenecking ENCFF686NWE bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIZ, ENCFF002EJC, ENCFF807MUK 6145022951 ENCODE Processing Pipeline cdc2bda4d37c4678a76fc0925fb4ceec https://www.encodeproject.org/files/ENCFF686NWE/@@download/ENCFF686NWE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF541OZF bam alignments ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJE, ENCFF002EJH, ENCFF807MUK 7576163211 ENCODE Processing Pipeline 1065e15e8931a0f793c9a68de4918473 https://www.encodeproject.org/files/ENCFF541OZF/@@download/ENCFF541OZF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF122GSS bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF081RWN, ENCFF572AYV, ENCFF807MUK 4920127701 ENCODE Processing Pipeline 31fb27e676325dd4ca2f036d10c421ca https://www.encodeproject.org/files/ENCFF122GSS/@@download/ENCFF122GSS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF345DHS bam alignments ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF170KFC, ENCFF291MOB, ENCFF807MUK 6014766185 ENCODE Processing Pipeline 6cded488f465c2b002fea57008e4314f https://www.encodeproject.org/files/ENCFF345DHS/@@download/ENCFF345DHS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF025ZGL bam alignments ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF495AQO, ENCFF541IAK, ENCFF807MUK 3758737855 ENCODE Processing Pipeline e4731ac3c5dd4290e69279c77ca6054a https://www.encodeproject.org/files/ENCFF025ZGL/@@download/ENCFF025ZGL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF094YRM bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 100 ENCFF110BCH, ENCFF115KHD, ENCFF807MUK 5109858548 ENCODE Processing Pipeline 56a96e79890f70a87b2890a00cf3d330 https://www.encodeproject.org/files/ENCFF094YRM/@@download/ENCFF094YRM.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF192DWU bam alignments ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 100 ENCFF156BTH, ENCFF521TTL, ENCFF807MUK 5514553615 ENCODE Processing Pipeline aa7df4e99ca63b4c32c3683f238aef19 https://www.encodeproject.org/files/ENCFF192DWU/@@download/ENCFF192DWU.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF120PSC bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF613EQS, ENCFF807MUK, ENCFF899AEL 5353820973 ENCODE Processing Pipeline d26b0932ad8ca215becea15f2b51510c https://www.encodeproject.org/files/ENCFF120PSC/@@download/ENCFF120PSC.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF213KHA bam alignments ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF177UXL, ENCFF568ZTC, ENCFF807MUK 5729434942 ENCODE Processing Pipeline 71862395d8d1c5796aa477e9259f5522 https://www.encodeproject.org/files/ENCFF213KHA/@@download/ENCFF213KHA.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF909EWL bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF164VSR, ENCFF758UPX, ENCFF807MUK 3617227696 ENCODE Processing Pipeline e5ba5ba13232bf4bee7a624299a1c486 https://www.encodeproject.org/files/ENCFF909EWL/@@download/ENCFF909EWL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF426ZNF bam alignments ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF836EUU, ENCFF942YMQ 4419440063 ENCODE Processing Pipeline 53dd99d3ef376279730735cc9f938aae https://www.encodeproject.org/files/ENCFF426ZNF/@@download/ENCFF426ZNF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF778FZI bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF859HOC, ENCFF869MHB 5222445580 ENCODE Processing Pipeline e203c2eb90759d2b3a2aebb876c7ca93 https://www.encodeproject.org/files/ENCFF778FZI/@@download/ENCFF778FZI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF161TEI bam alignments ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF066WCC, ENCFF711PUH, ENCFF807MUK 5225287371 ENCODE Processing Pipeline 570ce5907ff1880743759abd9b5f5077 https://www.encodeproject.org/files/ENCFF161TEI/@@download/ENCFF161TEI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF236KFT bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF853FHN, ENCFF919KAD 4883094217 ENCODE Processing Pipeline 9d4d7d61873a1f59ecf8302513ffac4c https://www.encodeproject.org/files/ENCFF236KFT/@@download/ENCFF236KFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF764AKW bam alignments ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF853ZLC, ENCFF952WBI 5229466920 ENCODE Processing Pipeline 8415e0a549a85a9bbfd64c53a9c5aa4f https://www.encodeproject.org/files/ENCFF764AKW/@@download/ENCFF764AKW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF759GZJ bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF767XIJ, ENCFF807MUK 1024674526 ENCODE Processing Pipeline 5811f41bae2721ebf2a981f911c98eda https://www.encodeproject.org/files/ENCFF759GZJ/@@download/ENCFF759GZJ.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF418WTW bam alignments ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF599YZI, ENCFF807MUK 1172580753 ENCODE Processing Pipeline 576219c7da1f7aed5a99cc7c27f57f38 https://www.encodeproject.org/files/ENCFF418WTW/@@download/ENCFF418WTW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF459NAB bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF363RMP, ENCFF502XNK, ENCFF807MUK 5896034637 ENCODE Processing Pipeline 5d1559c8269cfa83b047fc294fab9b08 https://www.encodeproject.org/files/ENCFF459NAB/@@download/ENCFF459NAB.bam hg19 released antibody characterized with exemption ENCFF608GXH bam alignments ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF278TLH, ENCFF807MUK, ENCFF960KMN 5201712847 ENCODE Processing Pipeline a59b3d985a1cc4143ef129b10a143f25 https://www.encodeproject.org/files/ENCFF608GXH/@@download/ENCFF608GXH.bam hg19 released antibody characterized with exemption ENCFF026ZLM bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419EHN, ENCFF807MUK, ENCFF979NLP 3140660547 ENCODE Processing Pipeline 86879a0d61c426fca9e99fa9dfbfb46b https://www.encodeproject.org/files/ENCFF026ZLM/@@download/ENCFF026ZLM.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF612XXN bam alignments ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF201BJK, ENCFF655YHB, ENCFF807MUK 6019218078 ENCODE Processing Pipeline 0aabb62c75b2c9fcd288ab0fa60e38c7 https://www.encodeproject.org/files/ENCFF612XXN/@@download/ENCFF612XXN.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF129NFS bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF541JAR, ENCFF594EJQ, ENCFF807MUK 3473496356 ENCODE Processing Pipeline 5981147b988dd2e5300794d4328750c2 https://www.encodeproject.org/files/ENCFF129NFS/@@download/ENCFF129NFS.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF897SYI bam alignments ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF020ZLF, ENCFF677MGT, ENCFF807MUK 7011385641 ENCODE Processing Pipeline 027bf27204ba07e461ad504a889f9381 https://www.encodeproject.org/files/ENCFF897SYI/@@download/ENCFF897SYI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF658SBL bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF371HHV, ENCFF688KSF, ENCFF807MUK 5480235003 ENCODE Processing Pipeline 4f7fd4cc6f7dea636643a71ffe920a82 https://www.encodeproject.org/files/ENCFF658SBL/@@download/ENCFF658SBL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF081WJA bam alignments ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF509LKR, ENCFF807MUK, ENCFF957TBU 4971361520 ENCODE Processing Pipeline 6537c7fe2bdc5421f21d5fc8e539b5a5 https://www.encodeproject.org/files/ENCFF081WJA/@@download/ENCFF081WJA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF483UIU bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF749JUG, ENCFF807MUK, ENCFF942QFN 2260492133 ENCODE Processing Pipeline c0c7a3b8347658aaabcc92c6a346a14b https://www.encodeproject.org/files/ENCFF483UIU/@@download/ENCFF483UIU.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF768VEY bam alignments ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF399CCC, ENCFF807MUK, ENCFF907JIE 3775558260 ENCODE Processing Pipeline 27c52a68a79f17c8217aeb835f83662d https://www.encodeproject.org/files/ENCFF768VEY/@@download/ENCFF768VEY.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF213TEN bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF174HBR, ENCFF574GQY, ENCFF807MUK 3695781771 ENCODE Processing Pipeline 93ad703a3e56c7a4813373216a2975ad https://www.encodeproject.org/files/ENCFF213TEN/@@download/ENCFF213TEN.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF224CNS bam alignments ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF453FDD, ENCFF807MUK, ENCFF808AJP 3194812190 ENCODE Processing Pipeline f233f6a6d2f9339dd0fc05fac1cf4c36 https://www.encodeproject.org/files/ENCFF224CNS/@@download/ENCFF224CNS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF332BZZ bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF652VHE, ENCFF807MUK, ENCFF924UXY 340807983 ENCODE Processing Pipeline 75528f344803c79294d728bb7fd10fbc https://www.encodeproject.org/files/ENCFF332BZZ/@@download/ENCFF332BZZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF534BBH bam alignments ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF408WZC, ENCFF570VVZ, ENCFF807MUK 691419130 ENCODE Processing Pipeline 806d42230b87592cabda5c92f6d549f1 https://www.encodeproject.org/files/ENCFF534BBH/@@download/ENCFF534BBH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF678DEO bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 100 ENCFF544FRM, ENCFF807MUK, ENCFF866MDO 4993100531 ENCODE Processing Pipeline da5585c951d9e1fba9ce0dd689518eb8 https://www.encodeproject.org/files/ENCFF678DEO/@@download/ENCFF678DEO.bam hg19 released ENCFF630HPE bam alignments ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 100 ENCFF461TIJ, ENCFF769JRE, ENCFF807MUK 4993070040 ENCODE Processing Pipeline 7e7c38b208625c627cb61a5ea29ef663 https://www.encodeproject.org/files/ENCFF630HPE/@@download/ENCFF630HPE.bam hg19 released ENCFF328GBF bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF807MUK, ENCFF987TDP 520767011 ENCODE Processing Pipeline 2f4b8abda62140097fece3054236eb28 https://www.encodeproject.org/files/ENCFF328GBF/@@download/ENCFF328GBF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF940NHX bam alignments ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF807MUK, ENCFF988VYU 591017105 ENCODE Processing Pipeline 594b5f3c3a1fdd7ce4d53952d06d86d4 https://www.encodeproject.org/files/ENCFF940NHX/@@download/ENCFF940NHX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF712WEK bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 100 ENCFF233HVB, ENCFF778PUP, ENCFF807MUK 3280078269 ENCODE Processing Pipeline 07c5e8bdab58cd83a8daaebbfde5ad40 https://www.encodeproject.org/files/ENCFF712WEK/@@download/ENCFF712WEK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF066EHS bam alignments ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 100 ENCFF491EOP, ENCFF807MUK, ENCFF960PEL 4313227770 ENCODE Processing Pipeline fb20ae7df16f48f9ee1d4f1cb80ee55f https://www.encodeproject.org/files/ENCFF066EHS/@@download/ENCFF066EHS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF862UZN bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF677RCM, ENCFF807MUK, ENCFF954WVJ 3374914779 ENCODE Processing Pipeline 5b8721a0e900ddd5fa8e86744336c084 https://www.encodeproject.org/files/ENCFF862UZN/@@download/ENCFF862UZN.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF080MNK bam alignments ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF280GFD, ENCFF807MUK, ENCFF899IKW 3723990459 ENCODE Processing Pipeline 9fe4ba26f81b283d5a7d3c453cec2d26 https://www.encodeproject.org/files/ENCFF080MNK/@@download/ENCFF080MNK.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF922WUK bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF420ZMB, ENCFF807MUK, ENCFF943EAL 3509243405 ENCODE Processing Pipeline e34fe8948c95a7829d99e4645ca47b2d https://www.encodeproject.org/files/ENCFF922WUK/@@download/ENCFF922WUK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF484PDX bam alignments ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317GWC, ENCFF368CYV, ENCFF807MUK 3525717735 ENCODE Processing Pipeline d7f76cc115f839aa27d797c92b8b4530 https://www.encodeproject.org/files/ENCFF484PDX/@@download/ENCFF484PDX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF784OML bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 76 ENCFF095AEN, ENCFF807MUK 1118214477 ENCODE Processing Pipeline 28a974dc75923fe2d6f735855fc29629 https://www.encodeproject.org/files/ENCFF784OML/@@download/ENCFF784OML.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF254QWH bam alignments ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF862ZWK 1170786581 ENCODE Processing Pipeline be8289e14ae33f441bfc91fbd27fb8a5 https://www.encodeproject.org/files/ENCFF254QWH/@@download/ENCFF254QWH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF773WIK bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 100 ENCFF478BKV, ENCFF604RKI, ENCFF807MUK 3153691796 ENCODE Processing Pipeline 30708ebfe83e1d6a33a5873387fa4485 https://www.encodeproject.org/files/ENCFF773WIK/@@download/ENCFF773WIK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF147YGB bam alignments ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 100 ENCFF076RPA, ENCFF636OJT, ENCFF807MUK 8412892923 ENCODE Processing Pipeline 35ebc010af1ba7e7aab235226907c0aa https://www.encodeproject.org/files/ENCFF147YGB/@@download/ENCFF147YGB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF354JYP bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF098DZH, ENCFF728AOV, ENCFF807MUK 5410875902 ENCODE Processing Pipeline b14312744c387cc944a4a50a10ca8128 https://www.encodeproject.org/files/ENCFF354JYP/@@download/ENCFF354JYP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF782WSP bam alignments ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF169DJA, ENCFF457HZH, ENCFF807MUK 5738171511 ENCODE Processing Pipeline 991ce5c75c4348d62c835e755823ec51 https://www.encodeproject.org/files/ENCFF782WSP/@@download/ENCFF782WSP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF041ENO bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103KFM, ENCFF807MUK, ENCFF891ZQL 3960462119 ENCODE Processing Pipeline 8453a59bd131b710ed99b3845700877a https://www.encodeproject.org/files/ENCFF041ENO/@@download/ENCFF041ENO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF147BZB bam alignments ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF043DWE, ENCFF537WRB, ENCFF807MUK 4909953608 ENCODE Processing Pipeline 807fdd1df1b920ff1aaecd3e47af03c6 https://www.encodeproject.org/files/ENCFF147BZB/@@download/ENCFF147BZB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF955NYD bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 100 ENCFF271TDT, ENCFF807MUK, ENCFF973RUL 1979062499 ENCODE Processing Pipeline 58b66f78549e8e8631cac917354bbb71 https://www.encodeproject.org/files/ENCFF955NYD/@@download/ENCFF955NYD.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF975GPP bam alignments ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 100 ENCFF079AYE, ENCFF649MUT, ENCFF807MUK 6751156691 ENCODE Processing Pipeline 217dbd0e7f656442d78d1c068589f907 https://www.encodeproject.org/files/ENCFF975GPP/@@download/ENCFF975GPP.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF665UFO bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 4 100 ENCFF540RXL, ENCFF807MUK, ENCFF907SBN 2655828332 ENCODE Processing Pipeline 0c77a8ebe538832849943a744402b18d https://www.encodeproject.org/files/ENCFF665UFO/@@download/ENCFF665UFO.bam hg19 released mild to moderate bottlenecking ENCFF209ASC bam alignments ENCSR636MKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BACH1-human DNA False 2017-01-31 ENCODE 3 100 ENCFF159UKF, ENCFF445LTV, ENCFF807MUK 3125279794 ENCODE Processing Pipeline d8bea431c1c6e842615615b72beb1987 https://www.encodeproject.org/files/ENCFF209ASC/@@download/ENCFF209ASC.bam hg19 released mild to moderate bottlenecking ENCFF585TAQ bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF240ZBS, ENCFF807MUK, ENCFF825HMN 4919594687 ENCODE Processing Pipeline e9df977ea8bbcfcf6486a3b94d68ca04 https://www.encodeproject.org/files/ENCFF585TAQ/@@download/ENCFF585TAQ.bam hg19 released ENCFF838PTN bam alignments ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF309EQC, ENCFF605MKF, ENCFF807MUK 5686540256 ENCODE Processing Pipeline a8fb0446b45129c47bd63f6cc678fee8 https://www.encodeproject.org/files/ENCFF838PTN/@@download/ENCFF838PTN.bam hg19 released ENCFF579XSU bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF273BIC, ENCFF807MUK 1459864876 ENCODE Processing Pipeline cdb7a756c6e1e6095d4c052d5446382e https://www.encodeproject.org/files/ENCFF579XSU/@@download/ENCFF579XSU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF536BYQ bam alignments ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF109ECO, ENCFF807MUK 1838537548 ENCODE Processing Pipeline 7bc844612166f7aa41776aabae5f06dd https://www.encodeproject.org/files/ENCFF536BYQ/@@download/ENCFF536BYQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF701CVL bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF712IBC, ENCFF807MUK 415487840 ENCODE Processing Pipeline ef1edb72352e4a3321057c19a005af27 https://www.encodeproject.org/files/ENCFF701CVL/@@download/ENCFF701CVL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF596ZQI bam alignments ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF144SDE, ENCFF807MUK 401089054 ENCODE Processing Pipeline bdc570e058764bca0b77d0b0c8670164 https://www.encodeproject.org/files/ENCFF596ZQI/@@download/ENCFF596ZQI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF785URO bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELB, ENCFF002ELE, ENCFF807MUK 4204192281 ENCODE Processing Pipeline 9ccdd635480c87e71f7cd989de6810ac https://www.encodeproject.org/files/ENCFF785URO/@@download/ENCFF785URO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF895RMY bam alignments ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKZ, ENCFF002ELA, ENCFF807MUK 4554666184 ENCODE Processing Pipeline 6088d4b6294c35f65d089f36d93e3ea0 https://www.encodeproject.org/files/ENCFF895RMY/@@download/ENCFF895RMY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF083HMM bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF269DXT, ENCFF645LBS, ENCFF807MUK 5482119329 ENCODE Processing Pipeline dd98490c7ed8f3e1a5c4cd529a75bae6 https://www.encodeproject.org/files/ENCFF083HMM/@@download/ENCFF083HMM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF360KGZ bam alignments ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF321HWW, ENCFF807MUK, ENCFF840CUL 5844855603 ENCODE Processing Pipeline 3b646eb5fa4858e870d79d56c42e37fc https://www.encodeproject.org/files/ENCFF360KGZ/@@download/ENCFF360KGZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF693VLX bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 100 ENCFF393VCX, ENCFF449ZXL, ENCFF807MUK 1529953763 ENCODE Processing Pipeline f0c38abe76f9a5461cfc6ce00135d9f5 https://www.encodeproject.org/files/ENCFF693VLX/@@download/ENCFF693VLX.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF609UIZ bam alignments ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 100 ENCFF732NSK, ENCFF807MUK, ENCFF808UIH 4238270070 ENCODE Processing Pipeline c4a52f79aa2a4a887ee08679a919b3d3 https://www.encodeproject.org/files/ENCFF609UIZ/@@download/ENCFF609UIZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF772RMA bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 100 ENCFF807MUK, ENCFF814SDG, ENCFF862VDD 4849524510 ENCODE Processing Pipeline 839f252392e307f792a119aff38aa6eb https://www.encodeproject.org/files/ENCFF772RMA/@@download/ENCFF772RMA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF560XEW bam alignments ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 100 ENCFF164VNM, ENCFF807MUK, ENCFF825EGN 4486306129 ENCODE Processing Pipeline ec3d53e71d5bde7528d14412eca67bc5 https://www.encodeproject.org/files/ENCFF560XEW/@@download/ENCFF560XEW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF069VLP bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF146CPM, ENCFF807MUK, ENCFF899BAM 3690499651 ENCODE Processing Pipeline cdf25afb15b52232a3b3b65bf300baff https://www.encodeproject.org/files/ENCFF069VLP/@@download/ENCFF069VLP.bam hg19 released file validation error mismatched file status ENCFF984NVJ bam alignments ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF300KRT, ENCFF807MUK, ENCFF847ZNJ 3813242555 ENCODE Processing Pipeline 1324f3ecc9a4792eb396dbee8256dc91 https://www.encodeproject.org/files/ENCFF984NVJ/@@download/ENCFF984NVJ.bam hg19 released file validation error mismatched file status ENCFF606ZAJ bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 50 ENCFF096HOR, ENCFF807MUK 888926028 ENCODE Processing Pipeline bebe0a87636faf45d7a456ddb31fbcbe https://www.encodeproject.org/files/ENCFF606ZAJ/@@download/ENCFF606ZAJ.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF455FCE bam alignments ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 50 ENCFF134IZQ, ENCFF807MUK 1011638566 ENCODE Processing Pipeline 11521044bf8510823db572a13e838940 https://www.encodeproject.org/files/ENCFF455FCE/@@download/ENCFF455FCE.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF007DFB bam alignments ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF272FAB, ENCFF581VOV, ENCFF807MUK 3724761858 ENCODE Processing Pipeline 3f6916044a52685bbdc2c3a245bb0cbe https://www.encodeproject.org/files/ENCFF007DFB/@@download/ENCFF007DFB.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF089EVB bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 100 ENCFF129CFJ, ENCFF674JSK, ENCFF807MUK 2758758779 ENCODE Processing Pipeline 5b36905dc18ce11492b91b608ed04d89 https://www.encodeproject.org/files/ENCFF089EVB/@@download/ENCFF089EVB.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF180RGQ bam alignments ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 100 ENCFF077SBC, ENCFF706WJQ, ENCFF807MUK 2663126580 ENCODE Processing Pipeline bafd2f2a96e768e1d2398d758d45a3b9 https://www.encodeproject.org/files/ENCFF180RGQ/@@download/ENCFF180RGQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF599UMV bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF293QLJ, ENCFF658VPO, ENCFF807MUK 5834440865 ENCODE Processing Pipeline 5de9eb2ee930280d95ff9451daa01c1e https://www.encodeproject.org/files/ENCFF599UMV/@@download/ENCFF599UMV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF555IYB bam alignments ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF549LFN, ENCFF807MUK, ENCFF849AAG 5651531293 ENCODE Processing Pipeline b26b3c3596328e46de0e73d247dd33d5 https://www.encodeproject.org/files/ENCFF555IYB/@@download/ENCFF555IYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF056PRJ bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF767STU, ENCFF783NMT, ENCFF807MUK 4965394543 ENCODE Processing Pipeline 774271dd22ed5cf68d48aa7b1b2bf551 https://www.encodeproject.org/files/ENCFF056PRJ/@@download/ENCFF056PRJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF738NDC bam alignments ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF258FCV, ENCFF311MID, ENCFF807MUK 6238848027 ENCODE Processing Pipeline 409a81e081d5030207b1e372b5d23906 https://www.encodeproject.org/files/ENCFF738NDC/@@download/ENCFF738NDC.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF554EGF bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 100 ENCFF111KWK, ENCFF171ZAE, ENCFF807MUK 4446889659 ENCODE Processing Pipeline 1038170add8eb66fc5a387326afaf71d https://www.encodeproject.org/files/ENCFF554EGF/@@download/ENCFF554EGF.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF095FXN bam alignments ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 100 ENCFF387TMU, ENCFF527YMQ, ENCFF807MUK 4745171382 ENCODE Processing Pipeline 09308ae05bec2cc08bb7711faee89759 https://www.encodeproject.org/files/ENCFF095FXN/@@download/ENCFF095FXN.bam hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF320JZH bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF186HCK, ENCFF262KLX, ENCFF807MUK 5200423924 ENCODE Processing Pipeline 9690d17cd4cce90755e25d29ad38e09a https://www.encodeproject.org/files/ENCFF320JZH/@@download/ENCFF320JZH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF882ISN bam alignments ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF255PXN, ENCFF280MIU, ENCFF807MUK 5410190987 ENCODE Processing Pipeline 118ba452751bbc3c3ebb0cbc7875e0b5 https://www.encodeproject.org/files/ENCFF882ISN/@@download/ENCFF882ISN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF441IWC bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF012ANG, ENCFF574RMG, ENCFF807MUK 529135936 ENCODE Processing Pipeline 14699a02e17fd9da66393dc5bff7b610 https://www.encodeproject.org/files/ENCFF441IWC/@@download/ENCFF441IWC.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF338SXL bam alignments ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF654HVL, ENCFF710RJL, ENCFF807MUK 509197576 ENCODE Processing Pipeline 9ac538d7afd9a2cad6bb8b5974cc6f4f https://www.encodeproject.org/files/ENCFF338SXL/@@download/ENCFF338SXL.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF462LKA bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF295WAN, ENCFF807MUK 945315412 ENCODE Processing Pipeline 13c1637267b19b48a1404d0648d8d50f https://www.encodeproject.org/files/ENCFF462LKA/@@download/ENCFF462LKA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF135XJA bam alignments ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF990WRZ 1014853996 ENCODE Processing Pipeline 2771f5872ef3035f1e999bed19d5f2db https://www.encodeproject.org/files/ENCFF135XJA/@@download/ENCFF135XJA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF743WPX bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF522MWJ, ENCFF807MUK 433971631 ENCODE Processing Pipeline 8f8f16256ee3a71a60638632fb0d7874 https://www.encodeproject.org/files/ENCFF743WPX/@@download/ENCFF743WPX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF280IUC bam alignments ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF905CNP 421090299 ENCODE Processing Pipeline 0f72be0ce9cc3ca484f8c43fee7361bc https://www.encodeproject.org/files/ENCFF280IUC/@@download/ENCFF280IUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF754QAG bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF872RVH, ENCFF906LEJ 3781547657 ENCODE Processing Pipeline 73934945bdda0890ba60b94d8e510ebc https://www.encodeproject.org/files/ENCFF754QAG/@@download/ENCFF754QAG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF265PPN bam alignments ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF018COO, ENCFF592FUT, ENCFF807MUK 4355713774 ENCODE Processing Pipeline be31fe765b2091c9e06660e49c1a6b84 https://www.encodeproject.org/files/ENCFF265PPN/@@download/ENCFF265PPN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF614FKO bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF331OEC, ENCFF796LKB, ENCFF807MUK 3968019034 ENCODE Processing Pipeline 2403141c5aa23b4d0090783627b6f4da https://www.encodeproject.org/files/ENCFF614FKO/@@download/ENCFF614FKO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF201SSP bam alignments ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF441WDI, ENCFF561LOR, ENCFF807MUK 5352132523 ENCODE Processing Pipeline 6b72a70854f6b0e70cc0de45056170c1 https://www.encodeproject.org/files/ENCFF201SSP/@@download/ENCFF201SSP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF303REI bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF152HSQ, ENCFF649OML, ENCFF807MUK 3534163333 ENCODE Processing Pipeline d0be524845f03066d2b8ac360b659b75 https://www.encodeproject.org/files/ENCFF303REI/@@download/ENCFF303REI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF739JCB bam alignments ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF082EXH, ENCFF231CRO, ENCFF807MUK 6309239728 ENCODE Processing Pipeline 96fc66882595db03b7c744b3ad42591a https://www.encodeproject.org/files/ENCFF739JCB/@@download/ENCFF739JCB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF093CYD bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPU, ENCFF002EGT, ENCFF807MUK 5898559941 ENCODE Processing Pipeline f53341f7063fa2ee4481bd626f06646c https://www.encodeproject.org/files/ENCFF093CYD/@@download/ENCFF093CYD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF635JVW bam alignments ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPN, ENCFF002EGL, ENCFF807MUK 3786369662 ENCODE Processing Pipeline 613a9fcb99dde50ad4ab644b88e5feb6 https://www.encodeproject.org/files/ENCFF635JVW/@@download/ENCFF635JVW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF389WLJ bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF145TXO, ENCFF793WFY, ENCFF807MUK 3627302095 ENCODE Processing Pipeline fcb123f1d333645bc4d7beca10f74bfa https://www.encodeproject.org/files/ENCFF389WLJ/@@download/ENCFF389WLJ.bam hg19 released mild to moderate bottlenecking ENCFF341UEE bam alignments ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF768SQO, ENCFF807MUK, ENCFF998YDA 3762554628 ENCODE Processing Pipeline 8d41f97f617777e4f7b89a3f07c5ac96 https://www.encodeproject.org/files/ENCFF341UEE/@@download/ENCFF341UEE.bam hg19 released mild to moderate bottlenecking ENCFF993IXQ bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXD, ENCFF807MUK 795757913 ENCODE Processing Pipeline 580fad63b75b45f99aa3e199253e3cb5 https://www.encodeproject.org/files/ENCFF993IXQ/@@download/ENCFF993IXQ.bam hg19 released low read length ENCFF823OXL bam alignments ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXE, ENCFF807MUK 848780028 ENCODE Processing Pipeline b48c11d2ef177ff626657763ad0f9405 https://www.encodeproject.org/files/ENCFF823OXL/@@download/ENCFF823OXL.bam hg19 released low read length ENCFF974JDO bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 100 ENCFF187NIJ, ENCFF252HPP, ENCFF807MUK 4433087833 ENCODE Processing Pipeline 0cb53c143f05b3b0cd48e031ef5e511f https://www.encodeproject.org/files/ENCFF974JDO/@@download/ENCFF974JDO.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF720ZIN bam alignments ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 100 ENCFF610TGH, ENCFF807MUK, ENCFF976NWF 3988760237 ENCODE Processing Pipeline a2891e9b5373f7dfe5e339726c486b36 https://www.encodeproject.org/files/ENCFF720ZIN/@@download/ENCFF720ZIN.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF041VKO bam alignments ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 50 ENCFF419FJV, ENCFF807MUK 1072168504 ENCODE Processing Pipeline 20f0883729b92c2f6525691743cd0fff https://www.encodeproject.org/files/ENCFF041VKO/@@download/ENCFF041VKO.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF520SIO bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF064YHZ, ENCFF794GSX, ENCFF807MUK 4215145265 ENCODE Processing Pipeline 5af2bd48e5224e2b018fe2fc22354c00 https://www.encodeproject.org/files/ENCFF520SIO/@@download/ENCFF520SIO.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF805PAZ bam alignments ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF170QQM, ENCFF376TGF, ENCFF807MUK 4349828657 ENCODE Processing Pipeline 8c320acf9700b79a4e17e0f1739f0ad0 https://www.encodeproject.org/files/ENCFF805PAZ/@@download/ENCFF805PAZ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF687EVJ bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 76 ENCFF071BCK, ENCFF438UGJ, ENCFF807MUK, ENCFF842MOT, ENCFF953USV 1328490058 ENCODE Processing Pipeline 49076d079eba01246c68e848b100d813 https://www.encodeproject.org/files/ENCFF687EVJ/@@download/ENCFF687EVJ.bam hg19 released antibody characterized with exemption NTR biosample ENCFF365YNJ bam alignments ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 76 ENCFF146LUA, ENCFF414LTY, ENCFF807MUK 1194374916 ENCODE Processing Pipeline 6ef526439edaa88d2d28ef9375f6ddb3 https://www.encodeproject.org/files/ENCFF365YNJ/@@download/ENCFF365YNJ.bam hg19 released antibody characterized with exemption NTR biosample ENCFF056YEU bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF394OKZ, ENCFF579DKO, ENCFF807MUK 3069930850 ENCODE Processing Pipeline 658fbc654bf48964a185aee78ac59d83 https://www.encodeproject.org/files/ENCFF056YEU/@@download/ENCFF056YEU.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF688SSK bam alignments ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF691DSF, ENCFF807MUK, ENCFF810SJL 3064998527 ENCODE Processing Pipeline 8059b4367fdf2bf3e8603b71bf939228 https://www.encodeproject.org/files/ENCFF688SSK/@@download/ENCFF688SSK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF005DDP bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 100 ENCFF245NVS, ENCFF277DLT, ENCFF807MUK 3558174404 ENCODE Processing Pipeline 9edf4f5bf4d931d0bcf43ed088cf820e https://www.encodeproject.org/files/ENCFF005DDP/@@download/ENCFF005DDP.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF585JBT bam alignments ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 100 ENCFF239WHZ, ENCFF441EMM, ENCFF807MUK 6672108719 ENCODE Processing Pipeline 365c67c7d579471808a2827966314632 https://www.encodeproject.org/files/ENCFF585JBT/@@download/ENCFF585JBT.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF606POP bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 76 ENCFF066XNQ, ENCFF407ARC, ENCFF807MUK 1921042812 ENCODE Processing Pipeline 913e39e5e1aa4829b7de5b2155a59ec5 https://www.encodeproject.org/files/ENCFF606POP/@@download/ENCFF606POP.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF753PRR bam alignments ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 76 ENCFF636UQF, ENCFF807MUK, ENCFF907SOV 4568468125 ENCODE Processing Pipeline 861a94929b29b982250a3a598f4155de https://www.encodeproject.org/files/ENCFF753PRR/@@download/ENCFF753PRR.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF879SEB bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF408NSX, ENCFF807MUK, ENCFF877OHU 5662162359 ENCODE Processing Pipeline 35382fccfa3681243e8523ea70bd5524 https://www.encodeproject.org/files/ENCFF879SEB/@@download/ENCFF879SEB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF283HYB bam alignments ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF454MNE, ENCFF509PJP, ENCFF807MUK 5934258712 ENCODE Processing Pipeline 6cdcad9da27d4d64d5218dc334ee3524 https://www.encodeproject.org/files/ENCFF283HYB/@@download/ENCFF283HYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF606YTH bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF029HOW, ENCFF270PKY, ENCFF807MUK 2297081950 ENCODE Processing Pipeline f3676d69056250ecb5f912f4b89afb69 https://www.encodeproject.org/files/ENCFF606YTH/@@download/ENCFF606YTH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF105XTZ bam alignments ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF587AYW, ENCFF625HJX, ENCFF807MUK 3088621409 ENCODE Processing Pipeline fa44b66aca18378a29c61b2be22339c1 https://www.encodeproject.org/files/ENCFF105XTZ/@@download/ENCFF105XTZ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF889DCH bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 40 ENCFF486FVK, ENCFF807MUK 343831882 ENCODE Processing Pipeline b6d3da168c56665ede06974a7f5fcfb5 https://www.encodeproject.org/files/ENCFF889DCH/@@download/ENCFF889DCH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF103MEZ bam alignments ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 40 ENCFF308HCL, ENCFF807MUK 389864842 ENCODE Processing Pipeline fe5f0bfecd676a403f492db0ef9583ef https://www.encodeproject.org/files/ENCFF103MEZ/@@download/ENCFF103MEZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF934FGG bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF056SPK, ENCFF807MUK, ENCFF958CWG 4976105196 ENCODE Processing Pipeline 2c982c4407923f36d1d21182181ddaa6 https://www.encodeproject.org/files/ENCFF934FGG/@@download/ENCFF934FGG.bam hg19 released ENCFF931KUQ bam alignments ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF105UNR, ENCFF807MUK, ENCFF875MOP 3829564992 ENCODE Processing Pipeline fbaaab857efe86a81cb2732b6cc1891f https://www.encodeproject.org/files/ENCFF931KUQ/@@download/ENCFF931KUQ.bam hg19 released ENCFF931IXW bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPK, ENCFF002DUD, ENCFF807MUK 3196737589 ENCODE Processing Pipeline c75704f4d6e565fb1d0ddf92243dc0fc https://www.encodeproject.org/files/ENCFF931IXW/@@download/ENCFF931IXW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF909JKW bam alignments ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPR, ENCFF002EGN, ENCFF807MUK 5893009103 ENCODE Processing Pipeline 7e46a570e0f10577f208721131e0f549 https://www.encodeproject.org/files/ENCFF909JKW/@@download/ENCFF909JKW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF293ZMY bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF217XOV, ENCFF599IKS, ENCFF807MUK 3498520277 ENCODE Processing Pipeline 2238ea91437782a174b663c8d5151870 https://www.encodeproject.org/files/ENCFF293ZMY/@@download/ENCFF293ZMY.bam hg19 released low read depth ENCFF065XRG bam alignments ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF207NIS, ENCFF326BXX, ENCFF807MUK 3537256767 ENCODE Processing Pipeline 4b5c77541926fc1551c3053d5d03936c https://www.encodeproject.org/files/ENCFF065XRG/@@download/ENCFF065XRG.bam hg19 released low read depth ENCFF672FSO bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBI, ENCFF807MUK 838429818 ENCODE Processing Pipeline a26700ec2287ea9bdc67e5b161d291b1 https://www.encodeproject.org/files/ENCFF672FSO/@@download/ENCFF672FSO.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF177GPP bam alignments ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBK, ENCFF807MUK 860442904 ENCODE Processing Pipeline 0167cdd675db5b82b018267b99551e26 https://www.encodeproject.org/files/ENCFF177GPP/@@download/ENCFF177GPP.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF834MZI bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJY, ENCFF002EKG, ENCFF807MUK 5616613475 ENCODE Processing Pipeline 725b4d65029277247b9f0e28bd55d461 https://www.encodeproject.org/files/ENCFF834MZI/@@download/ENCFF834MZI.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF305PAV bam alignments ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKE, ENCFF002EKF, ENCFF807MUK 5524842002 ENCODE Processing Pipeline 87aa7709b374461b5a13925c1f5acfbc https://www.encodeproject.org/files/ENCFF305PAV/@@download/ENCFF305PAV.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF947NGO bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 3 ENCFF116EZS, ENCFF133ABX, ENCFF807MUK 917391405 ENCODE Processing Pipeline c9cfaf2f18ec1131e693969cd4156cb3 https://www.encodeproject.org/files/ENCFF947NGO/@@download/ENCFF947NGO.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF254TEL bam alignments ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF134EOW, ENCFF479NRX, ENCFF807MUK 1492832226 ENCODE Processing Pipeline ee1aaf308b4de52247ca09d8787ab56c https://www.encodeproject.org/files/ENCFF254TEL/@@download/ENCFF254TEL.bam hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF598OEP bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELN, ENCFF002ELO, ENCFF807MUK 3601484571 ENCODE Processing Pipeline ac31a56958304750a82a8f093cd39c2a https://www.encodeproject.org/files/ENCFF598OEP/@@download/ENCFF598OEP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456TDF bam alignments ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELG, ENCFF002ELH, ENCFF201POB, ENCFF722ZLB, ENCFF807MUK 4466481292 ENCODE Processing Pipeline 5a31d4e50ea6b2a7621c16fdb8d50d82 https://www.encodeproject.org/files/ENCFF456TDF/@@download/ENCFF456TDF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF969ZBO bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF293YFE, ENCFF330MCZ, ENCFF807MUK 4557108270 ENCODE Processing Pipeline 84ff0e945dcae564719cfc3d44cb4eb7 https://www.encodeproject.org/files/ENCFF969ZBO/@@download/ENCFF969ZBO.bam hg19 released ENCFF007UHY bam alignments ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF582IOZ, ENCFF807MUK, ENCFF957SQS 4202028100 ENCODE Processing Pipeline c9c5b7e03504fd26881273e6abb8f808 https://www.encodeproject.org/files/ENCFF007UHY/@@download/ENCFF007UHY.bam hg19 released ENCFF815FYD bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 100 ENCFF422BBZ, ENCFF580NZZ, ENCFF807MUK 4101068676 ENCODE Processing Pipeline d6e45c0abeae8112ecd06c314cc502e2 https://www.encodeproject.org/files/ENCFF815FYD/@@download/ENCFF815FYD.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF481IFQ bam alignments ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 100 ENCFF304NDL, ENCFF340BKZ, ENCFF807MUK 4586915517 ENCODE Processing Pipeline ddc63373fe0197c5615cfcfa20221ee7 https://www.encodeproject.org/files/ENCFF481IFQ/@@download/ENCFF481IFQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF678QLX bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 50 ENCFF245KJA, ENCFF807MUK 885498825 ENCODE Processing Pipeline 738a1025c977aebd8fc23437bb166140 https://www.encodeproject.org/files/ENCFF678QLX/@@download/ENCFF678QLX.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF136YSL bam alignments ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 50 ENCFF751TBY, ENCFF807MUK 1245539165 ENCODE Processing Pipeline a366d07c65ad2e863cf5493c7d691d9a https://www.encodeproject.org/files/ENCFF136YSL/@@download/ENCFF136YSL.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF000NJV bam alignments ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NKH 1456381639 Richard Myers, HAIB ad8a03537d7aa6bb31e3e268460e84ec https://www.encodeproject.org/files/ENCFF000NJV/@@download/ENCFF000NJV.bam hg19 released biological replicates with identical biosample ENCFF000NJW bam alignments ENCSR000BTT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NKK 1553106905 Richard Myers, HAIB b71e4855f8927feaee26ea3e0484733f https://www.encodeproject.org/files/ENCFF000NJW/@@download/ENCFF000NJW.bam hg19 released biological replicates with identical biosample ENCFF343GJG bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF002DOS, ENCFF002EIH, ENCFF807MUK 5630567667 ENCODE Processing Pipeline 77248fb99d490240d3caf7be55df4989 https://www.encodeproject.org/files/ENCFF343GJG/@@download/ENCFF343GJG.bam hg19 released experiment not submitted to GEO ENCFF345DEN bam alignments ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF121CLA, ENCFF679YFV, ENCFF807MUK 4828485353 ENCODE Processing Pipeline 0e70622a3b3f38aaeb535aa0ef53a181 https://www.encodeproject.org/files/ENCFF345DEN/@@download/ENCFF345DEN.bam hg19 released experiment not submitted to GEO ENCFF043GGB bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF796GTV, ENCFF807MUK 517371941 ENCODE Processing Pipeline 0bf1ca197a5dbed9ce194ca0a511945a https://www.encodeproject.org/files/ENCFF043GGB/@@download/ENCFF043GGB.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF053FUQ bam alignments ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF425JLP, ENCFF807MUK 981521713 ENCODE Processing Pipeline 58ab68dd26c211b9356de582aaf1ce32 https://www.encodeproject.org/files/ENCFF053FUQ/@@download/ENCFF053FUQ.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF091YMR bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF173JBW, ENCFF807MUK, ENCFF902JCN 4405488197 ENCODE Processing Pipeline a345e0d9a6cfb9533d2e1ce1f6c91975 https://www.encodeproject.org/files/ENCFF091YMR/@@download/ENCFF091YMR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF632BDC bam alignments ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF611UQT, ENCFF662MFL, ENCFF807MUK 5151573614 ENCODE Processing Pipeline 42bda5180b55a2d4d5c8a86267340c72 https://www.encodeproject.org/files/ENCFF632BDC/@@download/ENCFF632BDC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF053SKK bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF234NGI, ENCFF531KER, ENCFF807MUK 6122833273 ENCODE Processing Pipeline 002ac3341649c9cc9449f2e80efb04b2 https://www.encodeproject.org/files/ENCFF053SKK/@@download/ENCFF053SKK.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF527ONV bam alignments ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF315FTB, ENCFF807MUK, ENCFF863GPM 3915744041 ENCODE Processing Pipeline 5b5a069e1d6e1805715650b9030de4d1 https://www.encodeproject.org/files/ENCFF527ONV/@@download/ENCFF527ONV.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF666GAR bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 75 ENCFF561XFC, ENCFF807MUK 1416629118 ENCODE Processing Pipeline a878998dd9e0c4314c563fbbddc0cb92 https://www.encodeproject.org/files/ENCFF666GAR/@@download/ENCFF666GAR.bam hg19 released ENCFF965XIE bam alignments ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 76 ENCFF425QLF, ENCFF807MUK 1187859612 ENCODE Processing Pipeline 84842553ed9e716b73d56a3158fb018f https://www.encodeproject.org/files/ENCFF965XIE/@@download/ENCFF965XIE.bam hg19 released ENCFF198LHP bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJM, ENCFF002EJP, ENCFF807MUK 5587591205 ENCODE Processing Pipeline a030b60d4f40cb404d16f3ba5f2d0a36 https://www.encodeproject.org/files/ENCFF198LHP/@@download/ENCFF198LHP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF429SMO bam alignments ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJR, ENCFF002EJV, ENCFF807MUK 5292164071 ENCODE Processing Pipeline 4d2f3701ca7651cdd97d0c38d20b4336 https://www.encodeproject.org/files/ENCFF429SMO/@@download/ENCFF429SMO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF987CVS bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF220MRD, ENCFF498UTM, ENCFF807MUK 3038821813 ENCODE Processing Pipeline d4ec0076401e1b844a296cee09bd8471 https://www.encodeproject.org/files/ENCFF987CVS/@@download/ENCFF987CVS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF742YPV bam alignments ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF878ZEU, ENCFF899JOK 5248309703 ENCODE Processing Pipeline 356cc923e93b919a11dd37338768c77b https://www.encodeproject.org/files/ENCFF742YPV/@@download/ENCFF742YPV.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF085AZW bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF307XRL, ENCFF807MUK, ENCFF951ZXP 2627627872 ENCODE Processing Pipeline 895dfe0ff5c512cbe5f4e612ce2b2a87 https://www.encodeproject.org/files/ENCFF085AZW/@@download/ENCFF085AZW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF295OIX bam alignments ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF043SEF, ENCFF780EID, ENCFF807MUK 3837919076 ENCODE Processing Pipeline c8d8309740ffeb65815f1c649ff74fdc https://www.encodeproject.org/files/ENCFF295OIX/@@download/ENCFF295OIX.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF360QLH bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF465EOJ, ENCFF807MUK, ENCFF903BWT 4918990012 ENCODE Processing Pipeline 5b388a13b273f425022d75f6d29c6e7b https://www.encodeproject.org/files/ENCFF360QLH/@@download/ENCFF360QLH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF890KOK bam alignments ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF338YPL, ENCFF385MZK, ENCFF807MUK 5493729111 ENCODE Processing Pipeline 7e72a0228c65f28317ada5e237a2d628 https://www.encodeproject.org/files/ENCFF890KOK/@@download/ENCFF890KOK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF593DEU bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF002DTV, ENCFF002EHV, ENCFF807MUK 5561461906 ENCODE Processing Pipeline 49fb6b26934800b1ef79d8dc5a38cee3 https://www.encodeproject.org/files/ENCFF593DEU/@@download/ENCFF593DEU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF077BZZ bam alignments ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHT, ENCFF002EHX, ENCFF617KOF, ENCFF784VKF, ENCFF807MUK 4819659732 ENCODE Processing Pipeline d6d3c184cbf7effede2d0e7f11787407 https://www.encodeproject.org/files/ENCFF077BZZ/@@download/ENCFF077BZZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF973PTB bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF208FLC, ENCFF593NUK, ENCFF807MUK 4419480675 ENCODE Processing Pipeline 4e4d5761e9c35b156dad4f57a497b039 https://www.encodeproject.org/files/ENCFF973PTB/@@download/ENCFF973PTB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF416GTI bam alignments ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF039IGX, ENCFF176BPB, ENCFF807MUK 5504664779 ENCODE Processing Pipeline 6c47ca47d05b0acaf090d752169c46f0 https://www.encodeproject.org/files/ENCFF416GTI/@@download/ENCFF416GTI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF459WEJ bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF692TZI, ENCFF762YIW, ENCFF807MUK 4409714980 ENCODE Processing Pipeline 33ec928c9e2891dbb6d83a63ffd2c47b https://www.encodeproject.org/files/ENCFF459WEJ/@@download/ENCFF459WEJ.bam hg19 released mild to moderate bottlenecking ENCFF926PMG bam alignments ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF186GBM, ENCFF394CJB, ENCFF807MUK 5406362865 ENCODE Processing Pipeline f23b4d5ee3ab7f2700afdde546671261 https://www.encodeproject.org/files/ENCFF926PMG/@@download/ENCFF926PMG.bam hg19 released mild to moderate bottlenecking ENCFF539AVI bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 100 ENCFF771DFR, ENCFF807MUK, ENCFF931EDX 3108480001 ENCODE Processing Pipeline 559cb8bef608286d573c8e97b0c67455 https://www.encodeproject.org/files/ENCFF539AVI/@@download/ENCFF539AVI.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF288YZC bam alignments ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 100 ENCFF071FDG, ENCFF807MUK, ENCFF881HGO 3172366623 ENCODE Processing Pipeline 1bb95ea3d3d200acbdf6303a6c7d7a5d https://www.encodeproject.org/files/ENCFF288YZC/@@download/ENCFF288YZC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF696KXY bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 36 ENCFF002ACW, ENCFF807MUK 385490287 ENCODE Processing Pipeline 568a774ebf5d7f89dba14b9d8be2af59 https://www.encodeproject.org/files/ENCFF696KXY/@@download/ENCFF696KXY.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF199IID bam alignments ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 36 ENCFF807MUK, ENCFF854UWR, ENCFF989WYW 885692169 ENCODE Processing Pipeline 3335edf6d3c7f0aa345eccf6042ac757 https://www.encodeproject.org/files/ENCFF199IID/@@download/ENCFF199IID.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF502XEG bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 101 ENCFF070HUC, ENCFF791KUN, ENCFF807MUK 4172658572 ENCODE Processing Pipeline cdc727f919461a31fa484f9a2c32c918 https://www.encodeproject.org/files/ENCFF502XEG/@@download/ENCFF502XEG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF582WWH bam alignments ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 101 ENCFF171NPB, ENCFF655DBC, ENCFF807MUK 3804532027 ENCODE Processing Pipeline 7676473b47db1c176520fbd71c18d690 https://www.encodeproject.org/files/ENCFF582WWH/@@download/ENCFF582WWH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF978GRX bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 36 ENCFF657KNO, ENCFF807MUK 874033145 ENCODE Processing Pipeline 6d1f7ec354ad06e47c3edadbfc725de1 https://www.encodeproject.org/files/ENCFF978GRX/@@download/ENCFF978GRX.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF345ODT bam alignments ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 36 ENCFF144RFX, ENCFF807MUK 1138142570 ENCODE Processing Pipeline 1c8fe76e6d6f6e1faddded2030c0ec97 https://www.encodeproject.org/files/ENCFF345ODT/@@download/ENCFF345ODT.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF490FAT bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF394DER, ENCFF456OPD, ENCFF807MUK 2780047402 ENCODE Processing Pipeline 327d8bada50428b35682c3899d10e28e https://www.encodeproject.org/files/ENCFF490FAT/@@download/ENCFF490FAT.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF277EIF bam alignments ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF217XYK, ENCFF807MUK, ENCFF853FSA 3861142139 ENCODE Processing Pipeline a2c5e048e2a8c70cb54a6b40f742f909 https://www.encodeproject.org/files/ENCFF277EIF/@@download/ENCFF277EIF.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF420VDR bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF192LSU, ENCFF261LTR, ENCFF807MUK 4673872870 ENCODE Processing Pipeline 6d51cd6a60704932352202e93530d1f0 https://www.encodeproject.org/files/ENCFF420VDR/@@download/ENCFF420VDR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF402MTF bam alignments ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF233DTH, ENCFF650VLS, ENCFF807MUK 6972432935 ENCODE Processing Pipeline 94eaef8245654e104317f42d71a086bc https://www.encodeproject.org/files/ENCFF402MTF/@@download/ENCFF402MTF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF419WTW bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF610KRG, ENCFF807MUK, ENCFF859PAK 4972559644 ENCODE Processing Pipeline 2ec4b1b38141b5993f7b339b993edf7e https://www.encodeproject.org/files/ENCFF419WTW/@@download/ENCFF419WTW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF479DTT bam alignments ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF675CSM, ENCFF784RTY, ENCFF807MUK 5166262829 ENCODE Processing Pipeline b96069ba85054471782cc339f85a2881 https://www.encodeproject.org/files/ENCFF479DTT/@@download/ENCFF479DTT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF975BWD bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF014DZB, ENCFF363NUU, ENCFF807MUK 3860551278 ENCODE Processing Pipeline 6b056316c04af53bceb539291a46950e https://www.encodeproject.org/files/ENCFF975BWD/@@download/ENCFF975BWD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF667TBL bam alignments ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF322OHR, ENCFF807MUK, ENCFF930PJS 4982793512 ENCODE Processing Pipeline 617a0f858852f1250322f583347c4eed https://www.encodeproject.org/files/ENCFF667TBL/@@download/ENCFF667TBL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF327BYF bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKL, ENCFF002EKR, ENCFF807MUK 4173101310 ENCODE Processing Pipeline 97583b24bdf8164e16ccf3353485d032 https://www.encodeproject.org/files/ENCFF327BYF/@@download/ENCFF327BYF.bam hg19 released mild to moderate bottlenecking ENCFF288FXI bam alignments ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKK, ENCFF002EKO, ENCFF807MUK 4164373576 ENCODE Processing Pipeline 720c1767caa1da842d7401fbbb8f89b6 https://www.encodeproject.org/files/ENCFF288FXI/@@download/ENCFF288FXI.bam hg19 released mild to moderate bottlenecking ENCFF095UEF bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPH, ENCFF002EGD, ENCFF807MUK 4710573262 ENCODE Processing Pipeline 289be9e2f4d6e5696bd77514061b467f https://www.encodeproject.org/files/ENCFF095UEF/@@download/ENCFF095UEF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF481RQA bam alignments ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOZ, ENCFF002EGE, ENCFF807MUK 3463856910 ENCODE Processing Pipeline 7bf39f063f5593b11de418c5092cfece https://www.encodeproject.org/files/ENCFF481RQA/@@download/ENCFF481RQA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF712CHE bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 30 ENCFF000XLR, ENCFF807MUK 452964698 ENCODE Processing Pipeline 59139a40cf96dbba4ac3b11bd878bcd9 https://www.encodeproject.org/files/ENCFF712CHE/@@download/ENCFF712CHE.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF765DQW bam alignments ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 30 ENCFF000XLU, ENCFF807MUK 620143733 ENCODE Processing Pipeline 3f39b31c290e2dd729119fec890f049f https://www.encodeproject.org/files/ENCFF765DQW/@@download/ENCFF765DQW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF849ALO bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAV, ENCFF807MUK 867675059 ENCODE Processing Pipeline 11ebd368cf4b047f98d1fe7e0afe4b82 https://www.encodeproject.org/files/ENCFF849ALO/@@download/ENCFF849ALO.bam hg19 released low read length, low read depth ENCFF204YCT bam alignments ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EAR, ENCFF807MUK 777969751 ENCODE Processing Pipeline 963319c43327c76f214b0a274d5fc5bb https://www.encodeproject.org/files/ENCFF204YCT/@@download/ENCFF204YCT.bam hg19 released low read length, low read depth ENCFF320ABW bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 36 ENCFF750VZA, ENCFF807MUK 794361095 ENCODE Processing Pipeline f2dd195b93da35852db20f675de88d77 https://www.encodeproject.org/files/ENCFF320ABW/@@download/ENCFF320ABW.bam hg19 released low read length, mild to moderate bottlenecking ENCFF837FXP bam alignments ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 36 ENCFF215QNG, ENCFF807MUK, ENCFF989EPR 2241549272 ENCODE Processing Pipeline 475bb599cc0647f045bdf9ca5fea45d5 https://www.encodeproject.org/files/ENCFF837FXP/@@download/ENCFF837FXP.bam hg19 released low read length, mild to moderate bottlenecking ENCFF843XEZ bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF372SMO, ENCFF807MUK 942045270 ENCODE Processing Pipeline 744d54073dc9d0b5cfb1e3f729b87de9 https://www.encodeproject.org/files/ENCFF843XEZ/@@download/ENCFF843XEZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF709WTC bam alignments ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF360YKR, ENCFF807MUK 3836124845 ENCODE Processing Pipeline e1679f581f201ae574602bdcbff96a24 https://www.encodeproject.org/files/ENCFF709WTC/@@download/ENCFF709WTC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF771JAW bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF104PEG, ENCFF456XDQ, ENCFF807MUK 5296872218 ENCODE Processing Pipeline 537b9baf6660a9c85c8be10d15b7cbd6 https://www.encodeproject.org/files/ENCFF771JAW/@@download/ENCFF771JAW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF332MIA bam alignments ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF262SIO, ENCFF454CBQ, ENCFF807MUK 5229523311 ENCODE Processing Pipeline 685df57a290f4781d4710a9e5f4355d1 https://www.encodeproject.org/files/ENCFF332MIA/@@download/ENCFF332MIA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF102RWP bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 100 ENCFF025YQV, ENCFF572GPA, ENCFF807MUK 4450232867 ENCODE Processing Pipeline b3fdf126b153ac65a4488b4af6d015cb https://www.encodeproject.org/files/ENCFF102RWP/@@download/ENCFF102RWP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF758OOR bam alignments ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 100 ENCFF098JPF, ENCFF732PVD, ENCFF807MUK 5041061584 ENCODE Processing Pipeline a075fad4e871ff4f4666a0747c180dc4 https://www.encodeproject.org/files/ENCFF758OOR/@@download/ENCFF758OOR.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF965ZXK bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 50 ENCFF277ODW, ENCFF542BMY, ENCFF807MUK 1164273204 ENCODE Processing Pipeline 2d16b607a01377763cbfc10e610d2724 https://www.encodeproject.org/files/ENCFF965ZXK/@@download/ENCFF965ZXK.bam hg19 released missing genetic modification characterization ENCFF772MDW bam alignments ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 50 ENCFF006QJD, ENCFF765LUQ, ENCFF807MUK 1108593667 ENCODE Processing Pipeline e3221e11e300b67e9d28a807f3bfd762 https://www.encodeproject.org/files/ENCFF772MDW/@@download/ENCFF772MDW.bam hg19 released missing genetic modification characterization ENCFF338XLV bam alignments ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF074BZR, ENCFF177FJZ, ENCFF807MUK, ENCFF832NVU, ENCFF988YXY 7745373823 ENCODE Processing Pipeline 961f5e0ac47efbd6da6eeb3ee79ae924 https://www.encodeproject.org/files/ENCFF338XLV/@@download/ENCFF338XLV.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF843NNY bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF365YXG, ENCFF392CXN, ENCFF807MUK 4400774182 ENCODE Processing Pipeline cc957bc9ac3ad61d98f68ac1e1804761 https://www.encodeproject.org/files/ENCFF843NNY/@@download/ENCFF843NNY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF616KOM bam alignments ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF620OZQ, ENCFF807MUK, ENCFF889HHE 5405815553 ENCODE Processing Pipeline fc955c535f3d6eba4155f51a3c047fcb https://www.encodeproject.org/files/ENCFF616KOM/@@download/ENCFF616KOM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF448TVU bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIB, ENCFF807MUK 1296506873 ENCODE Processing Pipeline abe25ba4670746723789251d9e1a7139 https://www.encodeproject.org/files/ENCFF448TVU/@@download/ENCFF448TVU.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF711QEM bam alignments ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QID, ENCFF807MUK 1470601491 ENCODE Processing Pipeline dfb68d2387b539ec5079fb0b50671034 https://www.encodeproject.org/files/ENCFF711QEM/@@download/ENCFF711QEM.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF948XRU bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 100 ENCFF446XHP, ENCFF546YEQ, ENCFF807MUK 5337272684 ENCODE Processing Pipeline ab762f3901a29161882b66987fc05fbe https://www.encodeproject.org/files/ENCFF948XRU/@@download/ENCFF948XRU.bam hg19 released ENCFF921BVG bam alignments ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 100 ENCFF382GYA, ENCFF807MUK, ENCFF841ZHV 4237822844 ENCODE Processing Pipeline e826691c62ce1915a44f010746335089 https://www.encodeproject.org/files/ENCFF921BVG/@@download/ENCFF921BVG.bam hg19 released ENCFF253RUM bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 36 ENCFF606ZKP, ENCFF807MUK 560347862 ENCODE Processing Pipeline fbb7dfb26b19c10ec94433bcdb617237 https://www.encodeproject.org/files/ENCFF253RUM/@@download/ENCFF253RUM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF289HRS bam alignments ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 36 ENCFF805VUU, ENCFF807MUK 715805601 ENCODE Processing Pipeline d91ac3846607b3e4a427702d25e4e722 https://www.encodeproject.org/files/ENCFF289HRS/@@download/ENCFF289HRS.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF432WTX bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VVQ, ENCFF807MUK 617859854 ENCODE Processing Pipeline 2c4883e93297daa02e341fcdd31ea417 https://www.encodeproject.org/files/ENCFF432WTX/@@download/ENCFF432WTX.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF915EPF bam alignments ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VVP, ENCFF807MUK 895957440 ENCODE Processing Pipeline 7a7b988f59542bd129c8b6f2b0d9508b https://www.encodeproject.org/files/ENCFF915EPF/@@download/ENCFF915EPF.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF555IHR bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AWX, ENCFF807MUK 513809069 ENCODE Processing Pipeline 7c16da33417f478b4cadf8390108b380 https://www.encodeproject.org/files/ENCFF555IHR/@@download/ENCFF555IHR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF596CVC bam alignments ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AUH, ENCFF807MUK 869035148 ENCODE Processing Pipeline e470ac55b418ad6da67ca8424c59614f https://www.encodeproject.org/files/ENCFF596CVC/@@download/ENCFF596CVC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF088BUC bam alignments ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF384DGC, ENCFF445QWT, ENCFF807MUK 4272732409 ENCODE Processing Pipeline 152d64187edcd98ed24f38c360cdd7b6 https://www.encodeproject.org/files/ENCFF088BUC/@@download/ENCFF088BUC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF637PNR bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 4 100 ENCFF268JOY, ENCFF807MUK, ENCFF935GDU 3731919249 ENCODE Processing Pipeline a46d5faf54276324a80a93dc8cb45b9b https://www.encodeproject.org/files/ENCFF637PNR/@@download/ENCFF637PNR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF594JBQ bam alignments ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human DNA False 2017-03-16 ENCODE 3 100 ENCFF615SOF, ENCFF656UEH, ENCFF807MUK 3511379072 ENCODE Processing Pipeline 3f3c390476f41b44b047fabfa7f3cff8 https://www.encodeproject.org/files/ENCFF594JBQ/@@download/ENCFF594JBQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF845BWF bam alignments ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF043VXL, ENCFF807MUK, ENCFF837RUP 4031467848 ENCODE Processing Pipeline ff82c9896e9d462e8a778aa47cb826a4 https://www.encodeproject.org/files/ENCFF845BWF/@@download/ENCFF845BWF.bam hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF860FLL bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVS, ENCFF807MUK 742489020 ENCODE Processing Pipeline 201cca8ea9e86ce5d4f0a2320faebc01 https://www.encodeproject.org/files/ENCFF860FLL/@@download/ENCFF860FLL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF908WOK bam alignments ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVW, ENCFF807MUK 848458869 ENCODE Processing Pipeline f48eb83504eb2f5dc38d2a51e15641bc https://www.encodeproject.org/files/ENCFF908WOK/@@download/ENCFF908WOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF468BAA bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YSV, ENCFF807MUK 456657999 ENCODE Processing Pipeline 6ef33cc8aa983408d3e65c426013a9c0 https://www.encodeproject.org/files/ENCFF468BAA/@@download/ENCFF468BAA.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF741YEW bam alignments ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YTB, ENCFF807MUK 296026443 ENCODE Processing Pipeline 4478a676b204b1cb8a36715a6de60ccb https://www.encodeproject.org/files/ENCFF741YEW/@@download/ENCFF741YEW.bam hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF819KCS bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 100 ENCFF263QAS, ENCFF763NMB, ENCFF807MUK 4767066108 ENCODE Processing Pipeline 9b2a438e5fa80a2b7851b7cd515f9b72 https://www.encodeproject.org/files/ENCFF819KCS/@@download/ENCFF819KCS.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF608UCM bam alignments ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 100 ENCFF147CXN, ENCFF408SWF, ENCFF807MUK 7679608075 ENCODE Processing Pipeline da204060db0252c562ecc7488bfdc27b https://www.encodeproject.org/files/ENCFF608UCM/@@download/ENCFF608UCM.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF323PVX bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 50 ENCFF734FMD, ENCFF807MUK, ENCFF862UUB 1125719840 ENCODE Processing Pipeline 433d4ee6f9f589dd51d96625898e32ee https://www.encodeproject.org/files/ENCFF323PVX/@@download/ENCFF323PVX.bam hg19 released missing genetic modification characterization ENCFF133ZYE bam alignments ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 50 ENCFF807MUK, ENCFF962FCU, ENCFF994DBJ 1141658112 ENCODE Processing Pipeline baf7a6d7c1087c457d82f036f89b3800 https://www.encodeproject.org/files/ENCFF133ZYE/@@download/ENCFF133ZYE.bam hg19 released missing genetic modification characterization ENCFF459TVC bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPW, ENCFF807MUK 532915607 ENCODE Processing Pipeline 3fb9a0cd86bef37cadceb31bd726a1f3 https://www.encodeproject.org/files/ENCFF459TVC/@@download/ENCFF459TVC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF803DFL bam alignments ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQC, ENCFF807MUK 1002904752 ENCODE Processing Pipeline e32e54992339067250e1e10f62745557 https://www.encodeproject.org/files/ENCFF803DFL/@@download/ENCFF803DFL.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF010ZJB bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF304UHL, ENCFF449JTR, ENCFF807MUK 4164070461 ENCODE Processing Pipeline 3900005126e82daf3ec2667e20fe7fb3 https://www.encodeproject.org/files/ENCFF010ZJB/@@download/ENCFF010ZJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF030JHL bam alignments ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF063UGX, ENCFF442NIG, ENCFF807MUK 4585933192 ENCODE Processing Pipeline d7ff452f4a57330cd39a55d644efb211 https://www.encodeproject.org/files/ENCFF030JHL/@@download/ENCFF030JHL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF289IND bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF025PPV, ENCFF472OCU, ENCFF807MUK 2700745097 ENCODE Processing Pipeline 4a71b0d891086783a6da3930e009424f https://www.encodeproject.org/files/ENCFF289IND/@@download/ENCFF289IND.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF860NPU bam alignments ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 3 101 ENCFF278MPJ, ENCFF807MUK, ENCFF959SZB 3282971057 ENCODE Processing Pipeline ed4a1605b4272f0bd12032648d840a49 https://www.encodeproject.org/files/ENCFF860NPU/@@download/ENCFF860NPU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF894UUJ bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF807MUK, ENCFF835OOH, ENCFF931JHV 2800343109 ENCODE Processing Pipeline 455e045c1427b24af139887fffb7f687 https://www.encodeproject.org/files/ENCFF894UUJ/@@download/ENCFF894UUJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF113UPL bam alignments ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF180QIL, ENCFF374YOG, ENCFF807MUK 3786968287 ENCODE Processing Pipeline ee28aee20373b922fc6c99c72b645165 https://www.encodeproject.org/files/ENCFF113UPL/@@download/ENCFF113UPL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF856OQX bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 100 ENCFF124FJO, ENCFF497YJP, ENCFF807MUK 3897433966 ENCODE Processing Pipeline 1a0989f35386737443f0145873e0674a https://www.encodeproject.org/files/ENCFF856OQX/@@download/ENCFF856OQX.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF930YAS bam alignments ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 100 ENCFF187CTD, ENCFF300NMV, ENCFF807MUK 3371473135 ENCODE Processing Pipeline af563575e9e0191e2a46c6a225013d18 https://www.encodeproject.org/files/ENCFF930YAS/@@download/ENCFF930YAS.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF862OJR bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 100 ENCFF073TIY, ENCFF415BMN, ENCFF807MUK 4040105547 ENCODE Processing Pipeline 2bdebd3be7ad64f65d28ca66156302bc https://www.encodeproject.org/files/ENCFF862OJR/@@download/ENCFF862OJR.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF586ITU bam alignments ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 100 ENCFF556XCJ, ENCFF807MUK, ENCFF886VXN 4984107527 ENCODE Processing Pipeline fe0f1f5b3ee52a8315dc8c10d2a3eed4 https://www.encodeproject.org/files/ENCFF586ITU/@@download/ENCFF586ITU.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF419BCJ bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF031JCO, ENCFF579BJG, ENCFF807MUK 4056706019 ENCODE Processing Pipeline 8b26d8d5bfb17ee8c74086d8a48e15b1 https://www.encodeproject.org/files/ENCFF419BCJ/@@download/ENCFF419BCJ.bam hg19 released ENCFF275MTH bam alignments ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF290HFY, ENCFF389HJO, ENCFF807MUK 4123622959 ENCODE Processing Pipeline a39fcb88b4f6f23d2d715bd92c773588 https://www.encodeproject.org/files/ENCFF275MTH/@@download/ENCFF275MTH.bam hg19 released ENCFF423SVA bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAS, ENCFF807MUK 993114665 ENCODE Processing Pipeline 2d4b0645018d093f71c69fa900a56c77 https://www.encodeproject.org/files/ENCFF423SVA/@@download/ENCFF423SVA.bam hg19 released low read length ENCFF876KIY bam alignments ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAY, ENCFF807MUK 880139109 ENCODE Processing Pipeline 7bf0f2567c767ddef3f04624cce6e038 https://www.encodeproject.org/files/ENCFF876KIY/@@download/ENCFF876KIY.bam hg19 released low read length ENCFF124TQP bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF703DNA, ENCFF807MUK, ENCFF958CZA 3436790908 ENCODE Processing Pipeline 5f2d9e3bad6fa2d5ebaed8f7b481787d https://www.encodeproject.org/files/ENCFF124TQP/@@download/ENCFF124TQP.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF132XOC bam alignments ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF482ODR, ENCFF807MUK, ENCFF987YBA 3049261310 ENCODE Processing Pipeline 7c4e6ddf8559731a2f77f30f4ce263e6 https://www.encodeproject.org/files/ENCFF132XOC/@@download/ENCFF132XOC.bam hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF792KZU bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF199JYM, ENCFF699UWV, ENCFF807MUK 2758279333 ENCODE Processing Pipeline 38796987b97f933f37f27315269e6152 https://www.encodeproject.org/files/ENCFF792KZU/@@download/ENCFF792KZU.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF744LEM bam alignments ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF471LIQ, ENCFF807MUK, ENCFF868YNQ 4994157742 ENCODE Processing Pipeline 517de504b6006063140ff7b595ca5c94 https://www.encodeproject.org/files/ENCFF744LEM/@@download/ENCFF744LEM.bam hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF961IJK bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 3 36 ENCFF002EVX, ENCFF807MUK 926730349 ENCODE Processing Pipeline a8d2bd30864db11642b29a3c12c84efe https://www.encodeproject.org/files/ENCFF961IJK/@@download/ENCFF961IJK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF289XMH bam alignments ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EVO, ENCFF807MUK 704359438 ENCODE Processing Pipeline ff5c931567baecea61c4431209d923bd https://www.encodeproject.org/files/ENCFF289XMH/@@download/ENCFF289XMH.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF754GXN bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF328EBF, ENCFF654OPW, ENCFF807MUK 3442424605 ENCODE Processing Pipeline dae0d8e9eebd6b63a7dda99175cbb402 https://www.encodeproject.org/files/ENCFF754GXN/@@download/ENCFF754GXN.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF832LBH bam alignments ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF061PFW, ENCFF807MUK, ENCFF988RPN 4192325347 ENCODE Processing Pipeline 914880e2294abaf9c9724178dd290c61 https://www.encodeproject.org/files/ENCFF832LBH/@@download/ENCFF832LBH.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF975XPX bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 36 ENCFF160OSF, ENCFF807MUK 740507266 ENCODE Processing Pipeline 58489dd9a61cf05f96d9494d9f366231 https://www.encodeproject.org/files/ENCFF975XPX/@@download/ENCFF975XPX.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF938TLX bam alignments ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 36 ENCFF742IYU, ENCFF807MUK 812369930 ENCODE Processing Pipeline 69fb6b68d9d114b9045fda607fb906a9 https://www.encodeproject.org/files/ENCFF938TLX/@@download/ENCFF938TLX.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF967GZZ bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF218OLA, ENCFF482SYF, ENCFF807MUK 5284549252 ENCODE Processing Pipeline eec2f0fc865cf624a389a427a672df0e https://www.encodeproject.org/files/ENCFF967GZZ/@@download/ENCFF967GZZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF897XWU bam alignments ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF229CUE, ENCFF567XFI, ENCFF807MUK 5773356530 ENCODE Processing Pipeline f7f3706fbd7fb7e44eb6834174e2190e https://www.encodeproject.org/files/ENCFF897XWU/@@download/ENCFF897XWU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF221VQA bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF421SXH, ENCFF685PQB, ENCFF807MUK 6378811825 ENCODE Processing Pipeline 15a8cd2a14133539d838bd0a983553be https://www.encodeproject.org/files/ENCFF221VQA/@@download/ENCFF221VQA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF222FDM bam alignments ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 3 101 ENCFF311EFD, ENCFF629DEC, ENCFF807MUK 2339888170 ENCODE Processing Pipeline 74c3449b3731ed5accce2346a40c2cf3 https://www.encodeproject.org/files/ENCFF222FDM/@@download/ENCFF222FDM.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF376SUD bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF696YWZ, ENCFF742XIJ, ENCFF807MUK 4934566905 ENCODE Processing Pipeline e4712163ecbd1e24ec3e9a453996be39 https://www.encodeproject.org/files/ENCFF376SUD/@@download/ENCFF376SUD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF353HWN bam alignments ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF568TBG, ENCFF581XPH, ENCFF807MUK 9394132392 ENCODE Processing Pipeline 0d376f2e6a20d76c5ef8ff7dce784d95 https://www.encodeproject.org/files/ENCFF353HWN/@@download/ENCFF353HWN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF285JVV bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJN, ENCFF002EJU, ENCFF807MUK 5256604060 ENCODE Processing Pipeline a9d45ac7dd95e9757bda33ba2b2bb7c9 https://www.encodeproject.org/files/ENCFF285JVV/@@download/ENCFF285JVV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF717AOP bam alignments ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJK, ENCFF002EJO, ENCFF807MUK 4138866249 ENCODE Processing Pipeline 06607d96750ce3c014b8e1953505d44e https://www.encodeproject.org/files/ENCFF717AOP/@@download/ENCFF717AOP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF541UXW bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPP, ENCFF002EGO, ENCFF807MUK 5342016924 ENCODE Processing Pipeline 17777c98d6e0044395d20fe485ca784e https://www.encodeproject.org/files/ENCFF541UXW/@@download/ENCFF541UXW.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF545HSY bam alignments ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPL, ENCFF002EGC, ENCFF807MUK 2731161346 ENCODE Processing Pipeline bdaeb2893732e3beeed66a0485cdef51 https://www.encodeproject.org/files/ENCFF545HSY/@@download/ENCFF545HSY.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF485GAK bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF331FYR, ENCFF374FPM, ENCFF807MUK 5787330460 ENCODE Processing Pipeline ff39cbd865586530c50249a98de2068a https://www.encodeproject.org/files/ENCFF485GAK/@@download/ENCFF485GAK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF099KPK bam alignments ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF112OGR, ENCFF655ROQ, ENCFF807MUK 6653999850 ENCODE Processing Pipeline 2fd3105740a83e62f59a6ff5e3d41eb0 https://www.encodeproject.org/files/ENCFF099KPK/@@download/ENCFF099KPK.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF425DVG bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 100 ENCFF712YHQ, ENCFF764UGY, ENCFF807MUK 3698860775 ENCODE Processing Pipeline 92fb0e43dca786c8ff71a9a39ae09877 https://www.encodeproject.org/files/ENCFF425DVG/@@download/ENCFF425DVG.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF366IHT bam alignments ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 100 ENCFF224YLQ, ENCFF736AVM, ENCFF807MUK 4022646273 ENCODE Processing Pipeline eb1c393642f0d7dc422a5a9b3ffa546d https://www.encodeproject.org/files/ENCFF366IHT/@@download/ENCFF366IHT.bam hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF293UAO bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YRS, ENCFF807MUK 724423101 ENCODE Processing Pipeline 5259752700f489349571ea9b70b19c49 https://www.encodeproject.org/files/ENCFF293UAO/@@download/ENCFF293UAO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF389FCP bam alignments ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YRQ, ENCFF807MUK 564116556 ENCODE Processing Pipeline a74d920415de8ed0f2abe692b53052ea https://www.encodeproject.org/files/ENCFF389FCP/@@download/ENCFF389FCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF216GDM bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF615YUR, ENCFF807MUK, ENCFF841SOA 4543461209 ENCODE Processing Pipeline 87e66b0522b02395503d8f546627a011 https://www.encodeproject.org/files/ENCFF216GDM/@@download/ENCFF216GDM.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF853POP bam alignments ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF558UNF, ENCFF807MUK, ENCFF979GWR 5209154298 ENCODE Processing Pipeline 303be7b43c80c346bce11325ff858cee https://www.encodeproject.org/files/ENCFF853POP/@@download/ENCFF853POP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF721HXJ bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF054XLD, ENCFF299RKG, ENCFF807MUK 4284688711 ENCODE Processing Pipeline e96e8bcee79814ffb630107756c3cc75 https://www.encodeproject.org/files/ENCFF721HXJ/@@download/ENCFF721HXJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF076LCN bam alignments ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF056GFU, ENCFF680BLN, ENCFF807MUK 6162414857 ENCODE Processing Pipeline 37b24a076fd7db0d336b838fed96bdce https://www.encodeproject.org/files/ENCFF076LCN/@@download/ENCFF076LCN.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF828KIU bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 5 101 ENCFF807MUK, ENCFF864RUH, ENCFF950RDX 4769824839 ENCODE Processing Pipeline d8b2a34852d26f0d5cbed249bd80ed32 https://www.encodeproject.org/files/ENCFF828KIU/@@download/ENCFF828KIU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF803MSF bam alignments ENCSR321MSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB21-human DNA formaldehyde False 2017-03-07 ENCODE 4 101 ENCFF280GIQ, ENCFF384HTL, ENCFF807MUK 5012740896 ENCODE Processing Pipeline 7f2a0e1bb449f2b4f5e13475a946953e https://www.encodeproject.org/files/ENCFF803MSF/@@download/ENCFF803MSF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF460MGY bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF385QYN, ENCFF738AWV, ENCFF807MUK 2287880654 ENCODE Processing Pipeline 65b95ead5d4d67c1cea72c0fb5d706aa https://www.encodeproject.org/files/ENCFF460MGY/@@download/ENCFF460MGY.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF382ACR bam alignments ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF218PFQ, ENCFF349BCP, ENCFF807MUK 4474342297 ENCODE Processing Pipeline aa26b01fceb392c7e3aecc66abf82424 https://www.encodeproject.org/files/ENCFF382ACR/@@download/ENCFF382ACR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF365PEG bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF632RPD, ENCFF730SWR, ENCFF807MUK 4227550226 ENCODE Processing Pipeline aad74602774ccee046b1ad8937e17395 https://www.encodeproject.org/files/ENCFF365PEG/@@download/ENCFF365PEG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF654YPD bam alignments ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF142PPK, ENCFF586VYV, ENCFF807MUK 4418599436 ENCODE Processing Pipeline 55b784021f3b09867c88c93440e8a759 https://www.encodeproject.org/files/ENCFF654YPD/@@download/ENCFF654YPD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF000XZZ bam alignments ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YAL 811272334 Michael Snyder, Stanford 121f73f564048bc655996162a60362ca https://www.encodeproject.org/files/ENCFF000XZZ/@@download/ENCFF000XZZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAD bam alignments ENCSR000EFA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YAM 1214761930 Michael Snyder, Stanford 5e3a7ddf32770e7b28c4959c99e30604 https://www.encodeproject.org/files/ENCFF000YAD/@@download/ENCFF000YAD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF379RWQ bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 74 ENCFF717KPM, ENCFF807MUK 1986349372 ENCODE Processing Pipeline 4a091108d69ea3ea0904e076461a5b9c https://www.encodeproject.org/files/ENCFF379RWQ/@@download/ENCFF379RWQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF748HWO bam alignments ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF342XVP, ENCFF807MUK, ENCFF997NPD 2626459468 ENCODE Processing Pipeline 1bca76373be4d7580fd7649789f3e4c6 https://www.encodeproject.org/files/ENCFF748HWO/@@download/ENCFF748HWO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF536GEN bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF499TRH, ENCFF702LEK, ENCFF807MUK 5493650852 ENCODE Processing Pipeline 9faec36952a233a4c69f1d7456d9d1e9 https://www.encodeproject.org/files/ENCFF536GEN/@@download/ENCFF536GEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF429JNW bam alignments ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF145CLU, ENCFF684UWO, ENCFF807MUK 713345133 ENCODE Processing Pipeline fb00ce966369481093388775bad69d44 https://www.encodeproject.org/files/ENCFF429JNW/@@download/ENCFF429JNW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF229UUP bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 100 ENCFF290TCQ, ENCFF514DNW, ENCFF807MUK 4932554878 ENCODE Processing Pipeline 28c0a9ece10ce6ea9a7920a77b4d8105 https://www.encodeproject.org/files/ENCFF229UUP/@@download/ENCFF229UUP.bam hg19 released ENCFF159EUB bam alignments ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 100 ENCFF015SCZ, ENCFF580QBV, ENCFF807MUK 6753842824 ENCODE Processing Pipeline 317e5228ef353b9568bdbef3b371b537 https://www.encodeproject.org/files/ENCFF159EUB/@@download/ENCFF159EUB.bam hg19 released ENCFF916OWO bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDS, ENCFF807MUK 764192275 ENCODE Processing Pipeline 68954f7faa8dd1f83ba422315aa4315b https://www.encodeproject.org/files/ENCFF916OWO/@@download/ENCFF916OWO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF185JZF bam alignments ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDR, ENCFF807MUK 698587648 ENCODE Processing Pipeline 44e70fffbf2f7f20708d5d062660d076 https://www.encodeproject.org/files/ENCFF185JZF/@@download/ENCFF185JZF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF775NNT bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 100 ENCFF121HAM, ENCFF807MUK, ENCFF890FRG 3258855889 ENCODE Processing Pipeline 58e69a2e66b3aec2628895f6625c7d5d https://www.encodeproject.org/files/ENCFF775NNT/@@download/ENCFF775NNT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF006RYF bam alignments ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 100 ENCFF308CZX, ENCFF786NXV, ENCFF807MUK 5814668806 ENCODE Processing Pipeline 3da2d7fa815de7dc0c7c46e2ad4f53ec https://www.encodeproject.org/files/ENCFF006RYF/@@download/ENCFF006RYF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF689SLU bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 100 ENCFF354BWI, ENCFF464SOW, ENCFF807MUK 5143620677 ENCODE Processing Pipeline b1c26cfea6d9af8a8bf3f0d6b5e88a93 https://www.encodeproject.org/files/ENCFF689SLU/@@download/ENCFF689SLU.bam hg19 released duplicate lane review ENCFF368MQN bam alignments ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 3 100 ENCFF326JSE, ENCFF359EHT, ENCFF807MUK 6566968799 ENCODE Processing Pipeline 7765885cd8101a505d432aaac5e60bdb https://www.encodeproject.org/files/ENCFF368MQN/@@download/ENCFF368MQN.bam hg19 released duplicate lane review ENCFF927NKH bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELS, ENCFF002ELV, ENCFF807MUK 4251010962 ENCODE Processing Pipeline f5d64394378d504409e569b3608c3704 https://www.encodeproject.org/files/ENCFF927NKH/@@download/ENCFF927NKH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF105FME bam alignments ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELT, ENCFF002ELU, ENCFF357WIZ, ENCFF456LRP, ENCFF807MUK 5042931969 ENCODE Processing Pipeline 70b5574543b12899df6e126a5a6f71f8 https://www.encodeproject.org/files/ENCFF105FME/@@download/ENCFF105FME.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF242DVM bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PAI, ENCFF807MUK 1079615364 ENCODE Processing Pipeline c56c95a6ddeabb8e566494a6108bdc05 https://www.encodeproject.org/files/ENCFF242DVM/@@download/ENCFF242DVM.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF904LDR bam alignments ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PAH, ENCFF807MUK 1222220289 ENCODE Processing Pipeline 7107162899eb1d927088c7ceace97fbe https://www.encodeproject.org/files/ENCFF904LDR/@@download/ENCFF904LDR.bam hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF636GYT bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUK, ENCFF807MUK 1034920838 ENCODE Processing Pipeline 7e781bae7e942fc0379038f78f4f5373 https://www.encodeproject.org/files/ENCFF636GYT/@@download/ENCFF636GYT.bam hg19 released low read depth, antibody characterized with exemption ENCFF970YTT bam alignments ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF696VXH, ENCFF807MUK 1074861134 ENCODE Processing Pipeline 5ec7a3e024110ee86259720e498b3d12 https://www.encodeproject.org/files/ENCFF970YTT/@@download/ENCFF970YTT.bam hg19 released low read depth, antibody characterized with exemption ENCFF890OID bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF002EEK, ENCFF807MUK 796998509 ENCODE Processing Pipeline c838bca76f12095f6c534e188cfe1c9a https://www.encodeproject.org/files/ENCFF890OID/@@download/ENCFF890OID.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF460VLB bam alignments ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF002EEB, ENCFF807MUK 726426359 ENCODE Processing Pipeline 4e4c412254e8765d373bfa463564c689 https://www.encodeproject.org/files/ENCFF460VLB/@@download/ENCFF460VLB.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF290PNU bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF283OAI, ENCFF806EBY, ENCFF807MUK 4290231028 ENCODE Processing Pipeline b4b19ec756a4ed1143c0639e562f6359 https://www.encodeproject.org/files/ENCFF290PNU/@@download/ENCFF290PNU.bam hg19 released ENCFF540FMP bam alignments ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF323EKY, ENCFF546MGM, ENCFF807MUK 4283100419 ENCODE Processing Pipeline 0ea2aefdb2142c6d188d89733cfbb011 https://www.encodeproject.org/files/ENCFF540FMP/@@download/ENCFF540FMP.bam hg19 released ENCFF716EKQ bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 100 ENCFF498ERZ, ENCFF759CFO, ENCFF807MUK 4589205014 ENCODE Processing Pipeline e637fb59209cd0c649794ad7f6d72926 https://www.encodeproject.org/files/ENCFF716EKQ/@@download/ENCFF716EKQ.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF282DZQ bam alignments ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 100 ENCFF578AYF, ENCFF611IXQ, ENCFF807MUK 8488653283 ENCODE Processing Pipeline 6e26cfdaf4d347788e1cb901245e3812 https://www.encodeproject.org/files/ENCFF282DZQ/@@download/ENCFF282DZQ.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF751LWI bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF008YRO, ENCFF807MUK 849464128 ENCODE Processing Pipeline 4a0f82bac6b7479244504730802ce06f https://www.encodeproject.org/files/ENCFF751LWI/@@download/ENCFF751LWI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF755SZH bam alignments ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF442SBA, ENCFF807MUK 1027149820 ENCODE Processing Pipeline 58d34272bbc329e9a0609301e3a3b0fc https://www.encodeproject.org/files/ENCFF755SZH/@@download/ENCFF755SZH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF037HFH bam alignments ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF547FMQ, ENCFF706PQV, ENCFF807MUK 3406553166 ENCODE Processing Pipeline dbc8aba40f0b649d44aa4732540a08ab https://www.encodeproject.org/files/ENCFF037HFH/@@download/ENCFF037HFH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF541WBX bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF253CXQ, ENCFF381IRT, ENCFF807MUK 1506656284 ENCODE Processing Pipeline 8882cf9531b4d748d7b57d80e7d4a72d https://www.encodeproject.org/files/ENCFF541WBX/@@download/ENCFF541WBX.bam hg19 released missing genetic modification characterization ENCFF084TWW bam alignments ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF429QSN, ENCFF645REX, ENCFF807MUK 1366860714 ENCODE Processing Pipeline 6dd909888cd14107694a1e270d5063b4 https://www.encodeproject.org/files/ENCFF084TWW/@@download/ENCFF084TWW.bam hg19 released missing genetic modification characterization ENCFF961GDC bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF580YPG, ENCFF774QGH, ENCFF807MUK 1380941915 ENCODE Processing Pipeline 6f628b2585e68ff9f6725e380d525c01 https://www.encodeproject.org/files/ENCFF961GDC/@@download/ENCFF961GDC.bam hg19 released missing genetic modification characterization ENCFF606YNV bam alignments ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 50 ENCFF055TRX, ENCFF243CPL, ENCFF807MUK 1736443460 ENCODE Processing Pipeline 699ada53dca8107d24c3a0a334c6cbfe https://www.encodeproject.org/files/ENCFF606YNV/@@download/ENCFF606YNV.bam hg19 released missing genetic modification characterization ENCFF242TUC bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 36 ENCFF000NDF, ENCFF807MUK 496667094 ENCODE Processing Pipeline 9096cdfffd8298b020b057a294dcef9b https://www.encodeproject.org/files/ENCFF242TUC/@@download/ENCFF242TUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF130JET bam alignments ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 36 ENCFF000NDH, ENCFF807MUK 748921577 ENCODE Processing Pipeline c3a1f4b559facc9249699b4c484a11f5 https://www.encodeproject.org/files/ENCFF130JET/@@download/ENCFF130JET.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF271APY bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 100 ENCFF777VSO, ENCFF807MUK, ENCFF838CMG 7560679721 ENCODE Processing Pipeline 29c408b9d4344902e2c89ff49abc1e0d https://www.encodeproject.org/files/ENCFF271APY/@@download/ENCFF271APY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF713UQY bam alignments ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 100 ENCFF425NMS, ENCFF616TAT, ENCFF677OAS, ENCFF717IEJ, ENCFF807MUK 11527063340 ENCODE Processing Pipeline dea8fd4dd5b2ccdcc9b3a70ed3b75e2f https://www.encodeproject.org/files/ENCFF713UQY/@@download/ENCFF713UQY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF652MLY bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 4 ENCFF029VDC, ENCFF689PMN, ENCFF807MUK 1005922581 ENCODE Processing Pipeline d54f5f140db5c72d44d7c8bcece00b55 https://www.encodeproject.org/files/ENCFF652MLY/@@download/ENCFF652MLY.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF628WUH bam alignments ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human DNA False 2017-12-01 ENCODE 3 ENCFF552KRG, ENCFF639TAD, ENCFF807MUK 1331345266 ENCODE Processing Pipeline 2ce2a39c438aa3c4f12379023bddfa8d https://www.encodeproject.org/files/ENCFF628WUH/@@download/ENCFF628WUH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF729JBY bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 50 ENCFF588TEN, ENCFF807MUK, ENCFF923QSF 1122534872 ENCODE Processing Pipeline f1872cf15242969a45f68090c383b71e https://www.encodeproject.org/files/ENCFF729JBY/@@download/ENCFF729JBY.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF500XCK bam alignments ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 50 ENCFF168UBS, ENCFF807MUK, ENCFF971NWQ 731309708 ENCODE Processing Pipeline 91a45b86ef9a0dee91d3d9af7c67cea4 https://www.encodeproject.org/files/ENCFF500XCK/@@download/ENCFF500XCK.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF000XCZ bam alignments ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDF 962178552 Peggy Farnham, USC 49370012c559bd874874432c0bf860ea https://www.encodeproject.org/files/ENCFF000XCZ/@@download/ENCFF000XCZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDA bam alignments ENCSR000EVJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDG 1076353094 Peggy Farnham, USC 02d31daf49445e206e95ca185d6efef2 https://www.encodeproject.org/files/ENCFF000XDA/@@download/ENCFF000XDA.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF336DPP bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NUP, ENCFF807MUK 599972860 ENCODE Processing Pipeline de3fbd6fa17003548fd81a6525c7a16a https://www.encodeproject.org/files/ENCFF336DPP/@@download/ENCFF336DPP.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF069CYJ bam alignments ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NUV, ENCFF807MUK 1059531670 ENCODE Processing Pipeline fb9bf7af59c63d3cf24e264b3a7fad64 https://www.encodeproject.org/files/ENCFF069CYJ/@@download/ENCFF069CYJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF325ZZV bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEO, ENCFF807MUK 758123969 ENCODE Processing Pipeline 66c51935d94256da68254bb4526482d0 https://www.encodeproject.org/files/ENCFF325ZZV/@@download/ENCFF325ZZV.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF637BQA bam alignments ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEM, ENCFF807MUK 426428817 ENCODE Processing Pipeline b2f5219555d1abbea519e01bfccfc87c https://www.encodeproject.org/files/ENCFF637BQA/@@download/ENCFF637BQA.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF968BOJ bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 76 ENCFF807MUK, ENCFF971UJG 926952079 ENCODE Processing Pipeline a29881318eb216c02b7c0e410a4eac56 https://www.encodeproject.org/files/ENCFF968BOJ/@@download/ENCFF968BOJ.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF901HAO bam alignments ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 76 ENCFF068DPU, ENCFF807MUK 2299640247 ENCODE Processing Pipeline f123c72173c8c608a868f2c51424a307 https://www.encodeproject.org/files/ENCFF901HAO/@@download/ENCFF901HAO.bam hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF728PLX bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 50 ENCFF323JYW, ENCFF807MUK 1085353508 ENCODE Processing Pipeline dcb128edd2f7fef282c7dd32b9aeabd4 https://www.encodeproject.org/files/ENCFF728PLX/@@download/ENCFF728PLX.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF360HZC bam alignments ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 50 ENCFF338QMC, ENCFF807MUK 1380961502 ENCODE Processing Pipeline 3d77b5e6ad9ace25a1f5b90b6518a89e https://www.encodeproject.org/files/ENCFF360HZC/@@download/ENCFF360HZC.bam hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF722RLB bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOL, ENCFF002EHS, ENCFF807MUK 6908267504 ENCODE Processing Pipeline bea52de030784d17eb49c7a16af64327 https://www.encodeproject.org/files/ENCFF722RLB/@@download/ENCFF722RLB.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF457KTM bam alignments ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DON, ENCFF002EHQ, ENCFF807MUK 5397525423 ENCODE Processing Pipeline 6b149a520e587de422171c4134eef915 https://www.encodeproject.org/files/ENCFF457KTM/@@download/ENCFF457KTM.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF209SJM bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFK, ENCFF807MUK 1317947874 ENCODE Processing Pipeline 810097b2a3d3f3fb148e106e5eade5e9 https://www.encodeproject.org/files/ENCFF209SJM/@@download/ENCFF209SJM.bam hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF901ETI bam alignments ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFL, ENCFF807MUK 1296681228 ENCODE Processing Pipeline 35ba72acf22f34470001a2bdf0d546f5 https://www.encodeproject.org/files/ENCFF901ETI/@@download/ENCFF901ETI.bam hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF298RPP bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF349XHH, ENCFF807MUK, ENCFF998XOV 3568892989 ENCODE Processing Pipeline bb5c10aedf32596116d87b0e229a89e3 https://www.encodeproject.org/files/ENCFF298RPP/@@download/ENCFF298RPP.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF695INR bam alignments ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF195DWB, ENCFF703FVJ, ENCFF807MUK 4259733582 ENCODE Processing Pipeline 37985f249c9d73034ad12ced822324d7 https://www.encodeproject.org/files/ENCFF695INR/@@download/ENCFF695INR.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF145BKE bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJH, ENCFF807MUK 626519123 ENCODE Processing Pipeline ff819259551815e4b6ad50bc988c87fd https://www.encodeproject.org/files/ENCFF145BKE/@@download/ENCFF145BKE.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF733ZQG bam alignments ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJO, ENCFF807MUK 1584089321 ENCODE Processing Pipeline 2760655d872c93c044b5bb4211028435 https://www.encodeproject.org/files/ENCFF733ZQG/@@download/ENCFF733ZQG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF999JKD bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYB, ENCFF807MUK 405105902 ENCODE Processing Pipeline 62223eabbed131c3c16b9654a40bbc4a https://www.encodeproject.org/files/ENCFF999JKD/@@download/ENCFF999JKD.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF776OUN bam alignments ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RXX, ENCFF807MUK 483561758 ENCODE Processing Pipeline 9213018d67c6e9a0cb9e2476b66b3595 https://www.encodeproject.org/files/ENCFF776OUN/@@download/ENCFF776OUN.bam hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF457VAD bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 50 ENCFF153EWU, ENCFF807MUK 1059431046 ENCODE Processing Pipeline d228787f818823eabc76a8bf2cd9f2a4 https://www.encodeproject.org/files/ENCFF457VAD/@@download/ENCFF457VAD.bam hg19 released low read depth, antibody characterized with exemption ENCFF901MQU bam alignments ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 50 ENCFF204ZXN, ENCFF807MUK 973262674 ENCODE Processing Pipeline fd1fcbcdad6c90d52bbd82e93231a4b6 https://www.encodeproject.org/files/ENCFF901MQU/@@download/ENCFF901MQU.bam hg19 released low read depth, antibody characterized with exemption ENCFF492RDK bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCL, ENCFF807MUK 769555881 ENCODE Processing Pipeline d2ee4744b90bd41a0961e2c801a2acd0 https://www.encodeproject.org/files/ENCFF492RDK/@@download/ENCFF492RDK.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF675VLP bam alignments ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCO, ENCFF807MUK 777949300 ENCODE Processing Pipeline c830f1c2cc4d36eba8097303c81db27b https://www.encodeproject.org/files/ENCFF675VLP/@@download/ENCFF675VLP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF624TXF bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF009IPS, ENCFF738HHZ, ENCFF807MUK 2375151573 ENCODE Processing Pipeline be81f9e34dcb404729945d20fd42890b https://www.encodeproject.org/files/ENCFF624TXF/@@download/ENCFF624TXF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF492UHU bam alignments ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF042FDU, ENCFF343AWT, ENCFF807MUK 3578555319 ENCODE Processing Pipeline f450f312b6c40c3e0791d52726abceba https://www.encodeproject.org/files/ENCFF492UHU/@@download/ENCFF492UHU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF965IIX bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 3 100 ENCFF113QZV, ENCFF807MUK, ENCFF891LJI 2987738184 ENCODE Processing Pipeline 4b26c9a74ec8808cd5c4818486c2cc47 https://www.encodeproject.org/files/ENCFF965IIX/@@download/ENCFF965IIX.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF021QKM bam alignments ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF165JGK, ENCFF492UOJ, ENCFF807MUK 4559827782 ENCODE Processing Pipeline 83a1fa4884eb6bafd23d400c815d1cd8 https://www.encodeproject.org/files/ENCFF021QKM/@@download/ENCFF021QKM.bam hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF002JGD bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EKJ, ENCFF002EKT, ENCFF807MUK 3930497896 ENCODE Processing Pipeline 3bf546708f6c2602130f5add5e769911 https://www.encodeproject.org/files/ENCFF002JGD/@@download/ENCFF002JGD.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF931ITC bam alignments ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKI, ENCFF002EKM, ENCFF807MUK 3795961046 ENCODE Processing Pipeline 7beaa909df175c7779f182f1772e5967 https://www.encodeproject.org/files/ENCFF931ITC/@@download/ENCFF931ITC.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF198QUT bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 100 ENCFF308IIP, ENCFF724LAL, ENCFF807MUK 3088275087 ENCODE Processing Pipeline 6e7064729bca34ee338cbf28c70c0ca9 https://www.encodeproject.org/files/ENCFF198QUT/@@download/ENCFF198QUT.bam hg19 released borderline replicate concordance, low read depth ENCFF123UZJ bam alignments ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 100 ENCFF085YNE, ENCFF460NQX, ENCFF807MUK 2994440430 ENCODE Processing Pipeline 70d217edc9ea00915ff29e9f4e7bbddf https://www.encodeproject.org/files/ENCFF123UZJ/@@download/ENCFF123UZJ.bam hg19 released borderline replicate concordance, low read depth ENCFF503ZQQ bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTO, ENCFF807MUK 518679431 ENCODE Processing Pipeline 0d2a773496914faa4113d3cb9b66b3cd https://www.encodeproject.org/files/ENCFF503ZQQ/@@download/ENCFF503ZQQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF184JSZ bam alignments ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTR, ENCFF807MUK 601153343 ENCODE Processing Pipeline a5abdfa13c65f62179f0317a93ebd2f4 https://www.encodeproject.org/files/ENCFF184JSZ/@@download/ENCFF184JSZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF589BQJ bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBF, ENCFF807MUK 825488894 ENCODE Processing Pipeline 91280fd034e5aa558ff0569266920de5 https://www.encodeproject.org/files/ENCFF589BQJ/@@download/ENCFF589BQJ.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF509WOE bam alignments ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBM, ENCFF807MUK 746119387 ENCODE Processing Pipeline 5e2f4ecc2bea12793448debeac34c6ad https://www.encodeproject.org/files/ENCFF509WOE/@@download/ENCFF509WOE.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF371ZBY bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NVV, ENCFF807MUK 438392999 ENCODE Processing Pipeline 286b0efc48b9f1f8e9ba3faa161e3e9d https://www.encodeproject.org/files/ENCFF371ZBY/@@download/ENCFF371ZBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF477EHC bam alignments ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NVQ, ENCFF807MUK 474541605 ENCODE Processing Pipeline 6260e93f25984f6d00b70e88fac094a4 https://www.encodeproject.org/files/ENCFF477EHC/@@download/ENCFF477EHC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF630WRV bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLZ, ENCFF807MUK 613313326 ENCODE Processing Pipeline a0d99c2438e6fb9da877f46b82fcc81b https://www.encodeproject.org/files/ENCFF630WRV/@@download/ENCFF630WRV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF338LXS bam alignments ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMD, ENCFF807MUK 677454903 ENCODE Processing Pipeline 09e6803e6688e2bb8c410f0ecd0c3605 https://www.encodeproject.org/files/ENCFF338LXS/@@download/ENCFF338LXS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF563WQV bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 50 ENCFF583BRM, ENCFF807MUK 896436280 ENCODE Processing Pipeline c863e3c9a4b93c39d6f7b7955df320d7 https://www.encodeproject.org/files/ENCFF563WQV/@@download/ENCFF563WQV.bam hg19 released borderline replicate concordance ENCFF534KZJ bam alignments ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 50 ENCFF204SCC, ENCFF807MUK 1529926606 ENCODE Processing Pipeline 6cccf27645b6e4e60e6abe2e7729c540 https://www.encodeproject.org/files/ENCFF534KZJ/@@download/ENCFF534KZJ.bam hg19 released borderline replicate concordance ENCFF500QLL bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJC, ENCFF807MUK 345759427 ENCODE Processing Pipeline 1f31bdeaed8eef8565be54399b123754 https://www.encodeproject.org/files/ENCFF500QLL/@@download/ENCFF500QLL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF802GPW bam alignments ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJF, ENCFF807MUK 597549122 ENCODE Processing Pipeline 2e933005746da9b5994769479eab26a1 https://www.encodeproject.org/files/ENCFF802GPW/@@download/ENCFF802GPW.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF560JLB bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XPZ, ENCFF807MUK 908383857 ENCODE Processing Pipeline 31ee295e8701b9621ccc4a8cffd49d51 https://www.encodeproject.org/files/ENCFF560JLB/@@download/ENCFF560JLB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF668MHY bam alignments ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQB, ENCFF807MUK 1066499791 ENCODE Processing Pipeline 440d623ace309f1875957530f95a0ae1 https://www.encodeproject.org/files/ENCFF668MHY/@@download/ENCFF668MHY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF704WFR bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PBA, ENCFF807MUK 455965748 ENCODE Processing Pipeline af1caed98059c9aa67b1848556a51f93 https://www.encodeproject.org/files/ENCFF704WFR/@@download/ENCFF704WFR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF752STA bam alignments ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PBG, ENCFF807MUK 839767451 ENCODE Processing Pipeline 3b6ef9233118828f10113d72d013a644 https://www.encodeproject.org/files/ENCFF752STA/@@download/ENCFF752STA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF267EKF bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF807MUK, ENCFF837CJW 1197006611 ENCODE Processing Pipeline b89de83e8fc571eab5cda8b05ffa831c https://www.encodeproject.org/files/ENCFF267EKF/@@download/ENCFF267EKF.bam hg19 released low read depth ENCFF182CYB bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 ENCFF807MUK, ENCFF945WVN 990833683 ENCODE Processing Pipeline 0897c9e30bee2316802f4b65e0a57160 https://www.encodeproject.org/files/ENCFF182CYB/@@download/ENCFF182CYB.bam hg19 released low read depth ENCFF388AJM bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 50 ENCFF807MUK, ENCFF837CJW 1197006639 ENCODE Processing Pipeline a39959fe10304481284280185474db1d https://www.encodeproject.org/files/ENCFF388AJM/@@download/ENCFF388AJM.bam hg19 released low read depth ENCFF057WPZ bam alignments ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 3 50 ENCFF807MUK, ENCFF945WVN 990833712 ENCODE Processing Pipeline 378bea0563dbf50eebfa8eef9303708b https://www.encodeproject.org/files/ENCFF057WPZ/@@download/ENCFF057WPZ.bam hg19 released low read depth ENCFF511AXI bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF488YTE, ENCFF807HTB, ENCFF807MUK 1571114379 ENCODE Processing Pipeline b057ed66a6b1562e018509adcc0036e1 https://www.encodeproject.org/files/ENCFF511AXI/@@download/ENCFF511AXI.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF617BET bam alignments ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF570JXV, ENCFF807MUK, ENCFF869ZLB 1646937969 ENCODE Processing Pipeline 6cf056b31c6fd25f414d8fe49271c10b https://www.encodeproject.org/files/ENCFF617BET/@@download/ENCFF617BET.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF000YHG bam alignments ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YHY 174407334 Kevin Struhl, HMS 6da64e128bc85b81a9aca726c52d2e49 https://www.encodeproject.org/files/ENCFF000YHG/@@download/ENCFF000YHG.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YHH bam alignments ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHX 349721276 Kevin Struhl, HMS 79ff0c0fa0512e1340a9f8b125762807 https://www.encodeproject.org/files/ENCFF000YHH/@@download/ENCFF000YHH.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YGK bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YGP 287068036 Kevin Struhl, HMS cec4e8359801f6b2778d77857a5d1984 https://www.encodeproject.org/files/ENCFF000YGK/@@download/ENCFF000YGK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGL bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YGS 219679702 Kevin Struhl, HMS 7ef5e0a402350f666cb16497d825d0e7 https://www.encodeproject.org/files/ENCFF000YGL/@@download/ENCFF000YGL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGM bam alignments ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YGR 116977443 Kevin Struhl, HMS 73e014ea5121f7386d838bd76af92e09 https://www.encodeproject.org/files/ENCFF000YGM/@@download/ENCFF000YGM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF185VLH bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUH, ENCFF807MUK 555824232 ENCODE Processing Pipeline 9d2188afa1ea88f8c857b7d4a101f21a https://www.encodeproject.org/files/ENCFF185VLH/@@download/ENCFF185VLH.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF862AER bam alignments ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUF, ENCFF807MUK 667038765 ENCODE Processing Pipeline 67435f97e947ff7d9bca67cdfb14746e https://www.encodeproject.org/files/ENCFF862AER/@@download/ENCFF862AER.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF763XIK bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHU, ENCFF807MUK 573112581 ENCODE Processing Pipeline abba2cd6a46df9f9d407be158382912e https://www.encodeproject.org/files/ENCFF763XIK/@@download/ENCFF763XIK.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF015KCD bam alignments ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIE, ENCFF807MUK 1119270721 ENCODE Processing Pipeline 8199ec0ca5deabe808f71a0354b709fb https://www.encodeproject.org/files/ENCFF015KCD/@@download/ENCFF015KCD.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF798GTB bam alignments ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF272HAB, ENCFF763GOA, ENCFF807MUK 2899375957 ENCODE Processing Pipeline a692ea3b6558fb8c62c67753f4b0fdc3 https://www.encodeproject.org/files/ENCFF798GTB/@@download/ENCFF798GTB.bam hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF000NKC bam alignments ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NKP 1266696504 Richard Myers, HAIB 03d2486ca6df5ec60e7fc09f6b351a71 https://www.encodeproject.org/files/ENCFF000NKC/@@download/ENCFF000NKC.bam hg19 released biological replicates with identical biosample ENCFF000NKD bam alignments ENCSR000BUR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NKQ 1338676227 Richard Myers, HAIB 9060d9729a5ff9e240509f2d32207aff https://www.encodeproject.org/files/ENCFF000NKD/@@download/ENCFF000NKD.bam hg19 released biological replicates with identical biosample ENCFF860GRK bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 100 ENCFF477TYW, ENCFF807MUK, ENCFF875MPK 3938035522 ENCODE Processing Pipeline 7b392fca049476ad3fd424e5c6352e96 https://www.encodeproject.org/files/ENCFF860GRK/@@download/ENCFF860GRK.bam hg19 released mild to moderate bottlenecking ENCFF100APY bam alignments ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 100 ENCFF501GVP, ENCFF590GNR, ENCFF807MUK 5221055577 ENCODE Processing Pipeline 09e816e2755557751b092d0030c16348 https://www.encodeproject.org/files/ENCFF100APY/@@download/ENCFF100APY.bam hg19 released mild to moderate bottlenecking ENCFF368TVX bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 100 ENCFF527AMZ, ENCFF767SQO, ENCFF807MUK 3914290530 ENCODE Processing Pipeline 72c3cb7d489ceb1f052ae32fa9732dfc https://www.encodeproject.org/files/ENCFF368TVX/@@download/ENCFF368TVX.bam hg19 released borderline replicate concordance ENCFF564RWN bam alignments ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 100 ENCFF183SXO, ENCFF806SEC, ENCFF807MUK 4499389901 ENCODE Processing Pipeline 9d7f0b8d2c9b12fac9d19d700bbde7f8 https://www.encodeproject.org/files/ENCFF564RWN/@@download/ENCFF564RWN.bam hg19 released borderline replicate concordance ENCFF343GPD bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTM, ENCFF807MUK 518807282 ENCODE Processing Pipeline 1282e387f1d2ef192c447a6c3c4881d4 https://www.encodeproject.org/files/ENCFF343GPD/@@download/ENCFF343GPD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF047BBR bam alignments ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTK, ENCFF807MUK 550298134 ENCODE Processing Pipeline 77c3b3318712735a957dd113d6fe6204 https://www.encodeproject.org/files/ENCFF047BBR/@@download/ENCFF047BBR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF119LQA bam alignments ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF177KGH, ENCFF225AAI, ENCFF807MUK 3162628389 ENCODE Processing Pipeline d4511a746b6c9164207e6f4e25182294 https://www.encodeproject.org/files/ENCFF119LQA/@@download/ENCFF119LQA.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF401FGJ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEH, ENCFF807MUK 289075969 ENCODE Processing Pipeline 02004b0f9bffa2df63ba58d145018e79 https://www.encodeproject.org/files/ENCFF401FGJ/@@download/ENCFF401FGJ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF488TFQ bam alignments ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEJ, ENCFF807MUK 308022329 ENCODE Processing Pipeline 4259f9c32e7932259982651675d80c06 https://www.encodeproject.org/files/ENCFF488TFQ/@@download/ENCFF488TFQ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF028JOY bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NJU, ENCFF807MUK 824227963 ENCODE Processing Pipeline 3e83bc855f64a17ff9c98d494cd318f9 https://www.encodeproject.org/files/ENCFF028JOY/@@download/ENCFF028JOY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF664NJN bam alignments ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NJS, ENCFF807MUK 990879313 ENCODE Processing Pipeline 6dd30c113e14d0c2bf795961e6408892 https://www.encodeproject.org/files/ENCFF664NJN/@@download/ENCFF664NJN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF051QXN bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOI, ENCFF807MUK 1151726408 ENCODE Processing Pipeline c36660b42bd2af32d41c0ae1a23c89f3 https://www.encodeproject.org/files/ENCFF051QXN/@@download/ENCFF051QXN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF863SME bam alignments ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOH, ENCFF807MUK 709454701 ENCODE Processing Pipeline 1eb18431fde50fe184d4cf95b8356c23 https://www.encodeproject.org/files/ENCFF863SME/@@download/ENCFF863SME.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF907AFT bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF719VPQ, ENCFF807MUK, ENCFF816GRP 4270708243 ENCODE Processing Pipeline bfc24fe66c84497ad15c4dacfbddbcf1 https://www.encodeproject.org/files/ENCFF907AFT/@@download/ENCFF907AFT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF351PFE bam alignments ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF273IVY, ENCFF287QCC, ENCFF807MUK 4882581152 ENCODE Processing Pipeline bfe61fd71caaad4a3248c9ae4fb9d14d https://www.encodeproject.org/files/ENCFF351PFE/@@download/ENCFF351PFE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF518QII bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VOU, ENCFF807MUK 759736162 ENCODE Processing Pipeline 5ea02588889231693daf59f9cc6c5c98 https://www.encodeproject.org/files/ENCFF518QII/@@download/ENCFF518QII.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF471DSB bam alignments ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VOW, ENCFF807MUK 910459644 ENCODE Processing Pipeline 2c41cacd1be8ad1150250628f190d212 https://www.encodeproject.org/files/ENCFF471DSB/@@download/ENCFF471DSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF497SFX bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZOV, ENCFF807MUK 723694235 ENCODE Processing Pipeline def9e13f5bc47ccb67cade09023a2f16 https://www.encodeproject.org/files/ENCFF497SFX/@@download/ENCFF497SFX.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF462CTI bam alignments ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZOT, ENCFF807MUK 720819813 ENCODE Processing Pipeline dcfd346c60291e2b527d4340f2c0c010 https://www.encodeproject.org/files/ENCFF462CTI/@@download/ENCFF462CTI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF519LBB bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HLG, ENCFF807MUK 546116542 ENCODE Processing Pipeline 0c20df87ee1d3dd35efd8337e2fcfaac https://www.encodeproject.org/files/ENCFF519LBB/@@download/ENCFF519LBB.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF788YCK bam alignments ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HLI, ENCFF807MUK 1094549739 ENCODE Processing Pipeline 90ec69dce4bcc2343ae18d5fc44b638c https://www.encodeproject.org/files/ENCFF788YCK/@@download/ENCFF788YCK.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF242ZAW bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF260FNX, ENCFF807MUK, ENCFF959GCL 3859979321 ENCODE Processing Pipeline 1650a63bcbe4f60ca1f1e862d145d08b https://www.encodeproject.org/files/ENCFF242ZAW/@@download/ENCFF242ZAW.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF518UZH bam alignments ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF555ESZ, ENCFF807MUK, ENCFF948WTZ 4333270585 ENCODE Processing Pipeline 1400e992eae452db3a42eab839a53ffb https://www.encodeproject.org/files/ENCFF518UZH/@@download/ENCFF518UZH.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF000RSN bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RSR 327119292 Vishwanath Iyer, UTA 7b7e1ee1d1761a9bfce909a3b9457c92 https://www.encodeproject.org/files/ENCFF000RSN/@@download/ENCFF000RSN.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000RSO bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RST 335051238 Vishwanath Iyer, UTA 051d25b8dea30181a64ddc9e1088a9dc https://www.encodeproject.org/files/ENCFF000RSO/@@download/ENCFF000RSO.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF848YQQ bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RSR, ENCFF807MUK 270872121 ENCODE Processing Pipeline c84714c266e660776e9bd3362441874e https://www.encodeproject.org/files/ENCFF848YQQ/@@download/ENCFF848YQQ.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF826QDC bam alignments ENCSR000DLN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RST, ENCFF807MUK 271387919 ENCODE Processing Pipeline a17a24f8a16a26ae7b61c1f9157df007 https://www.encodeproject.org/files/ENCFF826QDC/@@download/ENCFF826QDC.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF814UHO bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 100 ENCFF469EAQ, ENCFF807MUK, ENCFF820AHB 3523253443 ENCODE Processing Pipeline 39614cc96bcc4067efa94085412bba25 https://www.encodeproject.org/files/ENCFF814UHO/@@download/ENCFF814UHO.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF949SZU bam alignments ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 3 101 ENCFF245SAZ, ENCFF807MUK, ENCFF952UEN 4200051124 ENCODE Processing Pipeline d0066360e1826dcb1f08e7b859832f0a https://www.encodeproject.org/files/ENCFF949SZU/@@download/ENCFF949SZU.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF092PCB bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDE, ENCFF807MUK 815079731 ENCODE Processing Pipeline 9956a09ac4299e145236b2edf3378ff0 https://www.encodeproject.org/files/ENCFF092PCB/@@download/ENCFF092PCB.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF952XCP bam alignments ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDG, ENCFF807MUK 738262639 ENCODE Processing Pipeline 6285ff2d25ecc11e6985924183911767 https://www.encodeproject.org/files/ENCFF952XCP/@@download/ENCFF952XCP.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF760RWX bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PST, ENCFF807MUK 372060688 ENCODE Processing Pipeline e7ee799b36cc4d7ecc115dfa18692364 https://www.encodeproject.org/files/ENCFF760RWX/@@download/ENCFF760RWX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF616LIW bam alignments ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSY, ENCFF807MUK 699668418 ENCODE Processing Pipeline 1b10803f83ff1f849cff7386c1a34db4 https://www.encodeproject.org/files/ENCFF616LIW/@@download/ENCFF616LIW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF575KJF bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF094RKI, ENCFF217CEA, ENCFF807MUK 5602740895 ENCODE Processing Pipeline 8ee47ed2aa623432296265842d141985 https://www.encodeproject.org/files/ENCFF575KJF/@@download/ENCFF575KJF.bam hg19 released borderline replicate concordance ENCFF828KQX bam alignments ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF287QDK, ENCFF592NQI, ENCFF807MUK 5854909207 ENCODE Processing Pipeline cb0ee1b778cbbf9df2331f5613284809 https://www.encodeproject.org/files/ENCFF828KQX/@@download/ENCFF828KQX.bam hg19 released borderline replicate concordance ENCFF993IJH bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RBN, ENCFF807MUK 535892345 ENCODE Processing Pipeline a5d82a8bc157aa10e19103ce4ca98926 https://www.encodeproject.org/files/ENCFF993IJH/@@download/ENCFF993IJH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF611YAM bam alignments ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RBS, ENCFF807MUK 1215420345 ENCODE Processing Pipeline a409f6a9251861e94206c11ae47d4c1f https://www.encodeproject.org/files/ENCFF611YAM/@@download/ENCFF611YAM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF368KYI bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 4 100 ENCFF031QKW, ENCFF473RLY, ENCFF807MUK 4271856692 ENCODE Processing Pipeline cbc301020f1ec24a5f54644b636f591d https://www.encodeproject.org/files/ENCFF368KYI/@@download/ENCFF368KYI.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF090JBA bam alignments ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-09-20 ENCODE 3 100 ENCFF207YQO, ENCFF493EZE, ENCFF807MUK 4745356928 ENCODE Processing Pipeline 821621910cf8cffcec17e4bd3078ca67 https://www.encodeproject.org/files/ENCFF090JBA/@@download/ENCFF090JBA.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF297DWV bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF349SST, ENCFF807MUK, ENCFF841LNZ 4526276930 ENCODE Processing Pipeline e86073529586390f82b838185b62a4ad https://www.encodeproject.org/files/ENCFF297DWV/@@download/ENCFF297DWV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF102PTL bam alignments ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204USM, ENCFF647EYX, ENCFF807MUK 5233173104 ENCODE Processing Pipeline 61800249dc469619816d72841f591af7 https://www.encodeproject.org/files/ENCFF102PTL/@@download/ENCFF102PTL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF766FGH bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 100 ENCFF349RWV, ENCFF463BOF, ENCFF807MUK 4019617462 ENCODE Processing Pipeline e535f3150ce86097115a0771708ffff9 https://www.encodeproject.org/files/ENCFF766FGH/@@download/ENCFF766FGH.bam hg19 released ENCFF207NEA bam alignments ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 100 ENCFF338EIM, ENCFF807MUK, ENCFF873VGP 4440683006 ENCODE Processing Pipeline b24933702356bb785de2ffd9711842e3 https://www.encodeproject.org/files/ENCFF207NEA/@@download/ENCFF207NEA.bam hg19 released ENCFF994SVB bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF062RFF, ENCFF807MUK 392702019 ENCODE Processing Pipeline ba6b370e34a6315085248f14f0fb87d5 https://www.encodeproject.org/files/ENCFF994SVB/@@download/ENCFF994SVB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF362LCQ bam alignments ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF343ZNR, ENCFF807MUK 533669744 ENCODE Processing Pipeline dc329a9b129af2f3c54d4ceb40960b8f https://www.encodeproject.org/files/ENCFF362LCQ/@@download/ENCFF362LCQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF000XFA bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XFS 444257078 Michael Snyder, Stanford d2eaee9cb031509db7ea7f6d6cbe5208 https://www.encodeproject.org/files/ENCFF000XFA/@@download/ENCFF000XFA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFF bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XFT 415662837 Michael Snyder, Stanford 61795b9d264890dcdbbb5c3c519be6be https://www.encodeproject.org/files/ENCFF000XFF/@@download/ENCFF000XFF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XFG bam alignments ENCSR000EDK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFU 587752429 Michael Snyder, Stanford 6ff1bd0e16594ce2454af6a1109e6a53 https://www.encodeproject.org/files/ENCFF000XFG/@@download/ENCFF000XFG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF708WIV bam alignments ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 36 ENCFF135UCD, ENCFF202YVD, ENCFF807MUK 1076982133 ENCODE Processing Pipeline 567d90bd3aaba1a41601a8b56f903fc0 https://www.encodeproject.org/files/ENCFF708WIV/@@download/ENCFF708WIV.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF839OMX bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 76 ENCFF533CYJ, ENCFF807MUK 1190867476 ENCODE Processing Pipeline 6f11fdef0995fb297e1fac3f7949a7c4 https://www.encodeproject.org/files/ENCFF839OMX/@@download/ENCFF839OMX.bam hg19 released ENCFF432IXF bam alignments ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 75 ENCFF807MUK, ENCFF846FJT 1698277334 ENCODE Processing Pipeline 819ffa3371289e53016648ce360cd402 https://www.encodeproject.org/files/ENCFF432IXF/@@download/ENCFF432IXF.bam hg19 released ENCFF278JXM bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 40 ENCFF422CIB, ENCFF807MUK 452537772 ENCODE Processing Pipeline 4e23cd89fbb6bd8d804eeb812a6dc986 https://www.encodeproject.org/files/ENCFF278JXM/@@download/ENCFF278JXM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF456RAQ bam alignments ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 40 ENCFF380WBW, ENCFF395MZU, ENCFF604MMC, ENCFF807MUK 613915978 ENCODE Processing Pipeline b02060f1f35053e4354c6d048380d2eb https://www.encodeproject.org/files/ENCFF456RAQ/@@download/ENCFF456RAQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF232HND bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZBH, ENCFF807MUK 815128030 ENCODE Processing Pipeline 9bcd68f523d0ee6019ce697c61ad0cd5 https://www.encodeproject.org/files/ENCFF232HND/@@download/ENCFF232HND.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF375HMX bam alignments ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBJ, ENCFF807MUK 1159869390 ENCODE Processing Pipeline 52376b4f687b8f6c25b27d39e4d11c75 https://www.encodeproject.org/files/ENCFF375HMX/@@download/ENCFF375HMX.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF147VCN bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEJ, ENCFF807MUK 907232879 ENCODE Processing Pipeline 03504027d6d2aec11a29cd4df610471d https://www.encodeproject.org/files/ENCFF147VCN/@@download/ENCFF147VCN.bam hg19 released low read length ENCFF852RLW bam alignments ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEC, ENCFF807MUK 1007981529 ENCODE Processing Pipeline 12e21b7f9d23c095f545dd9b734740f2 https://www.encodeproject.org/files/ENCFF852RLW/@@download/ENCFF852RLW.bam hg19 released low read length ENCFF271AEZ bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTS, ENCFF807MUK 603170242 ENCODE Processing Pipeline 56e941c40e60faefb4e3164e88a2bcc1 https://www.encodeproject.org/files/ENCFF271AEZ/@@download/ENCFF271AEZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF668ZBZ bam alignments ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTW, ENCFF807MUK 631163376 ENCODE Processing Pipeline 0430634ff39d897af72cf845b3c04ce8 https://www.encodeproject.org/files/ENCFF668ZBZ/@@download/ENCFF668ZBZ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF473GDU bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 100 ENCFF218VUS, ENCFF807MUK, ENCFF890WRL 3577773016 ENCODE Processing Pipeline 726306d79db0b32ea8d444adb0353649 https://www.encodeproject.org/files/ENCFF473GDU/@@download/ENCFF473GDU.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF607LWB bam alignments ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 100 ENCFF281JRR, ENCFF538IMN, ENCFF807MUK 5107935295 ENCODE Processing Pipeline 02355c46d4860dabe03f2f9275da922c https://www.encodeproject.org/files/ENCFF607LWB/@@download/ENCFF607LWB.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF977MAY bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 36 ENCFF002EXB, ENCFF807MUK 594411027 ENCODE Processing Pipeline e18cb4cbf91fb72dc20974e6371a92de https://www.encodeproject.org/files/ENCFF977MAY/@@download/ENCFF977MAY.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF947OYN bam alignments ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 36 ENCFF002EWZ, ENCFF807MUK 935537850 ENCODE Processing Pipeline 5213b4ec6c4394ec4d79f5acdfe19546 https://www.encodeproject.org/files/ENCFF947OYN/@@download/ENCFF947OYN.bam hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF707NXH bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMI, ENCFF807MUK 426451184 ENCODE Processing Pipeline 6f0fb1116e4a621b0373f83e79d3e3dd https://www.encodeproject.org/files/ENCFF707NXH/@@download/ENCFF707NXH.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF999PXI bam alignments ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HMK, ENCFF807MUK 782259883 ENCODE Processing Pipeline b77ca9440133e8c9cbd4e66a1f8846b0 https://www.encodeproject.org/files/ENCFF999PXI/@@download/ENCFF999PXI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF955GGR bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382AAJ, ENCFF807MUK, ENCFF991FZE 3776938779 ENCODE Processing Pipeline 290845663519f1502a9ed2bfe48914b8 https://www.encodeproject.org/files/ENCFF955GGR/@@download/ENCFF955GGR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF200VJD bam alignments ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF632OUF, ENCFF762MHK, ENCFF807MUK 4503640219 ENCODE Processing Pipeline eebc09c880b69353a871be7d73a83fa6 https://www.encodeproject.org/files/ENCFF200VJD/@@download/ENCFF200VJD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF249XQG bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECX, ENCFF807MUK 690113223 ENCODE Processing Pipeline 734f6a6b68d7dccb99e676330b7bbb2a https://www.encodeproject.org/files/ENCFF249XQG/@@download/ENCFF249XQG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF821WKC bam alignments ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EBS, ENCFF807MUK 518307101 ENCODE Processing Pipeline 63e1ac78539676d08c877be7c0d26810 https://www.encodeproject.org/files/ENCFF821WKC/@@download/ENCFF821WKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF660MJY bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EBP, ENCFF807MUK 641650610 ENCODE Processing Pipeline dcd263b32298109cdff9cc1a3af43525 https://www.encodeproject.org/files/ENCFF660MJY/@@download/ENCFF660MJY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF150PLO bam alignments ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EBV, ENCFF807MUK 813102768 ENCODE Processing Pipeline 39e7649a8f29ce153a68368580f7ef3b https://www.encodeproject.org/files/ENCFF150PLO/@@download/ENCFF150PLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF634EGZ bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF481RYD, ENCFF543WLX, ENCFF807MUK 4819764618 ENCODE Processing Pipeline f261c7599e55b1697f29556b390b505c https://www.encodeproject.org/files/ENCFF634EGZ/@@download/ENCFF634EGZ.bam hg19 released ENCFF602MLF bam alignments ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF317PWU, ENCFF764PRL, ENCFF807MUK 5202252790 ENCODE Processing Pipeline 1e8b12bd6455db483a0c6ff622139d88 https://www.encodeproject.org/files/ENCFF602MLF/@@download/ENCFF602MLF.bam hg19 released ENCFF717MOF bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 5 100 ENCFF294EUQ, ENCFF742VZZ, ENCFF807MUK 2332804641 ENCODE Processing Pipeline 91c6f1fa5f254480fd1009feea635e9b https://www.encodeproject.org/files/ENCFF717MOF/@@download/ENCFF717MOF.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF655HZW bam alignments ENCSR778UBR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARID3A-human DNA False 2017-01-31 ENCODE 6 100 ENCFF807MUK, ENCFF900RHA, ENCFF993KAU 2260662340 ENCODE Processing Pipeline b15c6064f68dee55a4a9bc9091f772ef https://www.encodeproject.org/files/ENCFF655HZW/@@download/ENCFF655HZW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF952RZS bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YBO, ENCFF807MUK 447073401 ENCODE Processing Pipeline 18b2cee1961137feba39ea8eeefa66ef https://www.encodeproject.org/files/ENCFF952RZS/@@download/ENCFF952RZS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF576ZHG bam alignments ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YBL, ENCFF807MUK 799929697 ENCODE Processing Pipeline e9f7334f7ec922ae614e80c0a79a29fb https://www.encodeproject.org/files/ENCFF576ZHG/@@download/ENCFF576ZHG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180XGD bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF352EJH, ENCFF574OQO, ENCFF807MUK 6008288174 ENCODE Processing Pipeline 55b7afcf39d165aa55ba45318a5ecab0 https://www.encodeproject.org/files/ENCFF180XGD/@@download/ENCFF180XGD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF787ENP bam alignments ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF692XUJ, ENCFF807MUK, ENCFF962YIK 5677353593 ENCODE Processing Pipeline 86c679940b58f30a2be1d0856a516764 https://www.encodeproject.org/files/ENCFF787ENP/@@download/ENCFF787ENP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF967XYK bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 3 100 ENCFF294CYY, ENCFF546WQO, ENCFF807MUK 5781604052 ENCODE Processing Pipeline a4b90b1706ebd6048e869e36b0866adf https://www.encodeproject.org/files/ENCFF967XYK/@@download/ENCFF967XYK.bam hg19 released ENCFF951UTH bam alignments ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 100 ENCFF807MUK, ENCFF931UCZ, ENCFF965QBT 6969495186 ENCODE Processing Pipeline 36411d45f3c050fd2771f5c95b160d57 https://www.encodeproject.org/files/ENCFF951UTH/@@download/ENCFF951UTH.bam hg19 released ENCFF074CIT bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLH, ENCFF807MUK 946050222 ENCODE Processing Pipeline 12b645184f9adeff5b845ff3bc3ad101 https://www.encodeproject.org/files/ENCFF074CIT/@@download/ENCFF074CIT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF072HKU bam alignments ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLC, ENCFF000YLF, ENCFF807MUK 664081610 ENCODE Processing Pipeline d0a1056f3968d4f8ac796a8c8de378e9 https://www.encodeproject.org/files/ENCFF072HKU/@@download/ENCFF072HKU.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF724ITL bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WVQ, ENCFF807MUK 718536511 ENCODE Processing Pipeline b463f8600bb9a70b0155f322a59b1fce https://www.encodeproject.org/files/ENCFF724ITL/@@download/ENCFF724ITL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF414KEO bam alignments ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WVR, ENCFF807MUK 1089495466 ENCODE Processing Pipeline 61002477de2de21fcdb66f265e02530d https://www.encodeproject.org/files/ENCFF414KEO/@@download/ENCFF414KEO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF465ENL bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF612DVW, ENCFF807MUK, ENCFF910KPS 3044517214 ENCODE Processing Pipeline 52ca06441c844be5f3d9832c2bd788c0 https://www.encodeproject.org/files/ENCFF465ENL/@@download/ENCFF465ENL.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF042HRP bam alignments ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF060OGJ, ENCFF391PZV, ENCFF807MUK 6064401763 ENCODE Processing Pipeline 9403ffff238deb12aee5af704db9fcc8 https://www.encodeproject.org/files/ENCFF042HRP/@@download/ENCFF042HRP.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF228QGC bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002EWI, ENCFF807MUK 744572778 ENCODE Processing Pipeline 8ddd526120c0afcda9f8454430b71259 https://www.encodeproject.org/files/ENCFF228QGC/@@download/ENCFF228QGC.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF745VHU bam alignments ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002EWA, ENCFF807MUK 832219385 ENCODE Processing Pipeline 4d630a3c3e5ca623c9639173857779b4 https://www.encodeproject.org/files/ENCFF745VHU/@@download/ENCFF745VHU.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF027SPN bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF518DXW, ENCFF807MUK, ENCFF923WIN 2689616992 ENCODE Processing Pipeline 4afbd0cf9e8fdbd58a0419e129fd9aaf https://www.encodeproject.org/files/ENCFF027SPN/@@download/ENCFF027SPN.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF092BEM bam alignments ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF728GHG, ENCFF807MUK, ENCFF909GZY 2826289500 ENCODE Processing Pipeline 311b3b75341083c234967bd0b8d8f2a3 https://www.encodeproject.org/files/ENCFF092BEM/@@download/ENCFF092BEM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF000PBC bam alignments ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PBK 1239952685 Richard Myers, HAIB 37b050486b92b34b920b47b023155269 https://www.encodeproject.org/files/ENCFF000PBC/@@download/ENCFF000PBC.bam hg19 released biological replicates with identical biosample ENCFF000PBE bam alignments ENCSR000BSB ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PBP 1611001083 Richard Myers, HAIB 1a34e6b99dffc25e91fa0ad6500c07cd https://www.encodeproject.org/files/ENCFF000PBE/@@download/ENCFF000PBE.bam hg19 released biological replicates with identical biosample ENCFF000VXL bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VYD 182771510 Sherman Weissman, Yale 561ae5ec116854778eeec37a5f868f8e https://www.encodeproject.org/files/ENCFF000VXL/@@download/ENCFF000VXL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VXM bam alignments ENCSR000EYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VYE 215980387 Sherman Weissman, Yale 8712f61f06f2f8e0bf618edd5edd36b0 https://www.encodeproject.org/files/ENCFF000VXM/@@download/ENCFF000VXM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF113NSD bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 36 ENCFF058HDH, ENCFF807MUK 625941748 ENCODE Processing Pipeline 2e74f006c872f627137234b100e96b27 https://www.encodeproject.org/files/ENCFF113NSD/@@download/ENCFF113NSD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF029WHD bam alignments ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 36 ENCFF547JWR, ENCFF807MUK 750515659 ENCODE Processing Pipeline 28fed679ec4ce48fc3bd7b24f353b787 https://www.encodeproject.org/files/ENCFF029WHD/@@download/ENCFF029WHD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF058VAL bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAB, ENCFF807MUK 216657710 ENCODE Processing Pipeline fd78fd9cc155a3733680efd72fd8020d https://www.encodeproject.org/files/ENCFF058VAL/@@download/ENCFF058VAL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF629CYS bam alignments ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZZ, ENCFF807MUK 372527851 ENCODE Processing Pipeline d6a06149bcf000de42f68f7103c39a20 https://www.encodeproject.org/files/ENCFF629CYS/@@download/ENCFF629CYS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF665XOJ bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNB, ENCFF807MUK 424502908 ENCODE Processing Pipeline 2ab44fe99bf1e8a97552d78ad2a4c389 https://www.encodeproject.org/files/ENCFF665XOJ/@@download/ENCFF665XOJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF033CIS bam alignments ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNF, ENCFF807MUK 553613500 ENCODE Processing Pipeline 4bcce1957dc6bb6a1cdb778ce7d8ce87 https://www.encodeproject.org/files/ENCFF033CIS/@@download/ENCFF033CIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF863GDL bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 101 ENCFF491FIO, ENCFF807MUK, ENCFF916RIL 3814154589 ENCODE Processing Pipeline 808d1a47865afa9712cd5431464dba2c https://www.encodeproject.org/files/ENCFF863GDL/@@download/ENCFF863GDL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF422QKP bam alignments ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 101 ENCFF052DGQ, ENCFF807MUK, ENCFF816PKD 4804983657 ENCODE Processing Pipeline 99a8966e0518c9bb7570502e4f4a4099 https://www.encodeproject.org/files/ENCFF422QKP/@@download/ENCFF422QKP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF594YRH bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF220JCD, ENCFF807MUK, ENCFF937ADB 4603249726 ENCODE Processing Pipeline fac466c3ab849fbebd46ca54503440de https://www.encodeproject.org/files/ENCFF594YRH/@@download/ENCFF594YRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF293YXI bam alignments ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF569SLS, ENCFF784JLB, ENCFF807MUK 4817668032 ENCODE Processing Pipeline 667214efb0716db24a4b1313787ff052 https://www.encodeproject.org/files/ENCFF293YXI/@@download/ENCFF293YXI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF413SDX bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF443JDD, ENCFF750PYC, ENCFF807MUK 5089887161 ENCODE Processing Pipeline ee0b56b8da7ded036c7180c84ba8c01c https://www.encodeproject.org/files/ENCFF413SDX/@@download/ENCFF413SDX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF905CTJ bam alignments ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF363NAP, ENCFF551AQH, ENCFF807MUK 4926782387 ENCODE Processing Pipeline a0a616c88bc5afdafab61ed879a6447c https://www.encodeproject.org/files/ENCFF905CTJ/@@download/ENCFF905CTJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF456GXY bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF126ZYT, ENCFF726VMX, ENCFF807MUK 5102688902 ENCODE Processing Pipeline bab004b7fc490c3658d3a7a2ddfe66e9 https://www.encodeproject.org/files/ENCFF456GXY/@@download/ENCFF456GXY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF098YMN bam alignments ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF204KLS, ENCFF807MUK, ENCFF952MEL 6216922209 ENCODE Processing Pipeline ba6cf82a1ca1618b30987302c58f190b https://www.encodeproject.org/files/ENCFF098YMN/@@download/ENCFF098YMN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF717UGN bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF183GXL, ENCFF428FMZ, ENCFF807MUK 4943003568 ENCODE Processing Pipeline 10a19691270d467c08552dc1ba2bf64e https://www.encodeproject.org/files/ENCFF717UGN/@@download/ENCFF717UGN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF529LRA bam alignments ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF090IMJ, ENCFF217XXN, ENCFF807MUK 6085560421 ENCODE Processing Pipeline c2a51bc8a01f2dabbebc3ccde0b8d6b2 https://www.encodeproject.org/files/ENCFF529LRA/@@download/ENCFF529LRA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF894WEU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 76 ENCFF203DJH, ENCFF807MUK 1974337654 ENCODE Processing Pipeline fc8890c92b8899a8327addfcc20cdfc0 https://www.encodeproject.org/files/ENCFF894WEU/@@download/ENCFF894WEU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF720WGU bam alignments ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 76 ENCFF374ENZ, ENCFF807MUK 2662308777 ENCODE Processing Pipeline f5f5d6c3c6db3d21862fc8b9e7a0ab74 https://www.encodeproject.org/files/ENCFF720WGU/@@download/ENCFF720WGU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF000XLK bam alignments ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XPK 636876575 Sherman Weissman, Yale f742e1698f224112ff3509a55ac88ad3 https://www.encodeproject.org/files/ENCFF000XLK/@@download/ENCFF000XLK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XLL bam alignments ENCSR000EZK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XPJ 617143214 Sherman Weissman, Yale 51fdc572d31224c1edba590f0ecae554 https://www.encodeproject.org/files/ENCFF000XLL/@@download/ENCFF000XLL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF714VYF bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PMN, ENCFF807MUK 456500596 ENCODE Processing Pipeline 0d769120b09893e49ec9ff6efe68c72e https://www.encodeproject.org/files/ENCFF714VYF/@@download/ENCFF714VYF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF967BLL bam alignments ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PMK, ENCFF807MUK 506627868 ENCODE Processing Pipeline 357e6eda9af1bb231e628e41baf26840 https://www.encodeproject.org/files/ENCFF967BLL/@@download/ENCFF967BLL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF221NPH bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DQA, ENCFF002EGQ, ENCFF807MUK 5581802842 ENCODE Processing Pipeline 2c4722455b9f1a3d899fc5d2b4c768e8 https://www.encodeproject.org/files/ENCFF221NPH/@@download/ENCFF221NPH.bam hg19 released mild to moderate bottlenecking ENCFF429HOM bam alignments ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPY, ENCFF002EGY, ENCFF807MUK 4989500683 ENCODE Processing Pipeline d45f8eae7d0577df2ca2c47873337b96 https://www.encodeproject.org/files/ENCFF429HOM/@@download/ENCFF429HOM.bam hg19 released mild to moderate bottlenecking ENCFF965SIW bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF025RHU, ENCFF562VET, ENCFF807MUK 3002077249 ENCODE Processing Pipeline 0342a0364865da554fc8e144475cdc21 https://www.encodeproject.org/files/ENCFF965SIW/@@download/ENCFF965SIW.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF254NNQ bam alignments ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF102DIC, ENCFF146EKI, ENCFF807MUK 4709764038 ENCODE Processing Pipeline da3da205c505170306315d618b18670b https://www.encodeproject.org/files/ENCFF254NNQ/@@download/ENCFF254NNQ.bam hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF670BCP bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NLI, ENCFF807MUK 500713755 ENCODE Processing Pipeline 3897e03663185763e5ec2d43fc6e1b4c https://www.encodeproject.org/files/ENCFF670BCP/@@download/ENCFF670BCP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF260DQF bam alignments ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NLK, ENCFF807MUK 719070058 ENCODE Processing Pipeline 2027875978427e38a244ed4e685236cb https://www.encodeproject.org/files/ENCFF260DQF/@@download/ENCFF260DQF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF823IRF bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF587GLI, ENCFF807MUK, ENCFF862OIP 4485775002 ENCODE Processing Pipeline 990951f94b29e6c9d6d51349e38e0d15 https://www.encodeproject.org/files/ENCFF823IRF/@@download/ENCFF823IRF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF753PKK bam alignments ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF120XAX, ENCFF499WBO, ENCFF807MUK 6272044251 ENCODE Processing Pipeline d6c56a414a21158990c9dc6c1131e24a https://www.encodeproject.org/files/ENCFF753PKK/@@download/ENCFF753PKK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF245TKJ bam alignments ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF807MUK, ENCFF862PPU, ENCFF944QTE 1782941098 ENCODE Processing Pipeline f1724207b8636c21e9456eceb035c561 https://www.encodeproject.org/files/ENCFF245TKJ/@@download/ENCFF245TKJ.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF781CQH bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF005EKN, ENCFF267OTO, ENCFF807MUK 5157733542 ENCODE Processing Pipeline 066eec71508354a07cbfcb05ec6147ac https://www.encodeproject.org/files/ENCFF781CQH/@@download/ENCFF781CQH.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF048LDJ bam alignments ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF060CVH, ENCFF364YNQ, ENCFF807MUK 6007021067 ENCODE Processing Pipeline 9570226528e2f6d5de8b610c50060e8c https://www.encodeproject.org/files/ENCFF048LDJ/@@download/ENCFF048LDJ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF438VAZ bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF150IYM, ENCFF724ABX, ENCFF807MUK 4652060372 ENCODE Processing Pipeline f31ac1a1884a5d21e613e81010face0d https://www.encodeproject.org/files/ENCFF438VAZ/@@download/ENCFF438VAZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF399JID bam alignments ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF112XWZ, ENCFF421MDM, ENCFF807MUK 6327313768 ENCODE Processing Pipeline b55f081ee4ff0c2d6f1c09148227ca0f https://www.encodeproject.org/files/ENCFF399JID/@@download/ENCFF399JID.bam hg19 released missing genetic modification characterization missing control alignments ENCFF313KHO bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 3 101 ENCFF128QVX, ENCFF807MUK, ENCFF920JRG 4446687963 ENCODE Processing Pipeline da674c1c0aad51cceef06cf2bb5a67f8 https://www.encodeproject.org/files/ENCFF313KHO/@@download/ENCFF313KHO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF809NQI bam alignments ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 101 ENCFF701LQT, ENCFF807MUK, ENCFF956FQW 4700025326 ENCODE Processing Pipeline a80a57192346040eff23b48572fede5e https://www.encodeproject.org/files/ENCFF809NQI/@@download/ENCFF809NQI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF555CXI bam alignments ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF778LRO, ENCFF807MUK, ENCFF858IOX 3499732595 ENCODE Processing Pipeline 6bb95cde992f5983aea398fd9d58dea6 https://www.encodeproject.org/files/ENCFF555CXI/@@download/ENCFF555CXI.bam hg19 released antibody characterized with exemption ENCFF806VEG bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 100 ENCFF622YPS, ENCFF807MUK, ENCFF859WEK 11928896802 ENCODE Processing Pipeline f9331c12559811dfba25b42fa51087ee https://www.encodeproject.org/files/ENCFF806VEG/@@download/ENCFF806VEG.bam hg19 released experiment not submitted to GEO ENCFF833VNH bam alignments ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 3 101 ENCFF807MUK, ENCFF901UJY, ENCFF959PBM 4721428009 ENCODE Processing Pipeline 078fa9ead15ee464b7f0447e43e66ab0 https://www.encodeproject.org/files/ENCFF833VNH/@@download/ENCFF833VNH.bam hg19 released experiment not submitted to GEO ENCFF819AJF bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF155GMC, ENCFF264WMA, ENCFF807MUK 3095087806 ENCODE Processing Pipeline 1a44be4cc2de1ff105c55e592d6cead8 https://www.encodeproject.org/files/ENCFF819AJF/@@download/ENCFF819AJF.bam hg19 released mild to moderate bottlenecking ENCFF342HIU bam alignments ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF340SQP, ENCFF587OVW, ENCFF807MUK 3906480223 ENCODE Processing Pipeline 1cc83c1f8e693477806e4c860921f409 https://www.encodeproject.org/files/ENCFF342HIU/@@download/ENCFF342HIU.bam hg19 released mild to moderate bottlenecking ENCFF320VTA bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF305DHD, ENCFF807MUK, ENCFF837EIC 5200461731 ENCODE Processing Pipeline 9c053327ce109a5f636138a561ea1f2e https://www.encodeproject.org/files/ENCFF320VTA/@@download/ENCFF320VTA.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF604EUT bam alignments ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF514FUK, ENCFF796PBA, ENCFF807MUK 4577653790 ENCODE Processing Pipeline f952ed9e672464ee2fa88fa33619ed35 https://www.encodeproject.org/files/ENCFF604EUT/@@download/ENCFF604EUT.bam hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF173XUI bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 101 ENCFF423IUW, ENCFF558LMK, ENCFF807MUK 6310942603 ENCODE Processing Pipeline b6245a223c2557e919de3398cc326c23 https://www.encodeproject.org/files/ENCFF173XUI/@@download/ENCFF173XUI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF548QML bam alignments ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 101 ENCFF461NQQ, ENCFF707AMG, ENCFF807MUK 8419860856 ENCODE Processing Pipeline 504c7107308de4f60dbef689f5e63ad5 https://www.encodeproject.org/files/ENCFF548QML/@@download/ENCFF548QML.bam hg19 released missing genetic modification characterization missing control alignments ENCFF143SQI bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF352QLC, ENCFF807MUK, ENCFF927JLA 4028917052 ENCODE Processing Pipeline 5f7e6e41252c03e63075262555cc188e https://www.encodeproject.org/files/ENCFF143SQI/@@download/ENCFF143SQI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF379HWR bam alignments ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF083PWC, ENCFF597BCH, ENCFF807MUK 4489232191 ENCODE Processing Pipeline c64a99bc6f43e2e727c107226977ae84 https://www.encodeproject.org/files/ENCFF379HWR/@@download/ENCFF379HWR.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF221MEC bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 100 ENCFF110AZC, ENCFF481UNM, ENCFF807MUK 5254508089 ENCODE Processing Pipeline d4eb0100259cc554d4b690ac014b4663 https://www.encodeproject.org/files/ENCFF221MEC/@@download/ENCFF221MEC.bam hg19 released borderline replicate concordance ENCFF316MDQ bam alignments ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 100 ENCFF807MUK, ENCFF906JOB, ENCFF992YHZ 6616495201 ENCODE Processing Pipeline 2af9514a6cbb7bf321bb93e5de34c251 https://www.encodeproject.org/files/ENCFF316MDQ/@@download/ENCFF316MDQ.bam hg19 released borderline replicate concordance ENCFF619MNG bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF081KQF, ENCFF763MGN, ENCFF807MUK 4536980931 ENCODE Processing Pipeline 570c873d087fe1697506b3b783f77422 https://www.encodeproject.org/files/ENCFF619MNG/@@download/ENCFF619MNG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF322EJB bam alignments ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF201QVE, ENCFF807MUK, ENCFF904BBB 4694441801 ENCODE Processing Pipeline 90853cf8bf853fcf419214bc75f3e44e https://www.encodeproject.org/files/ENCFF322EJB/@@download/ENCFF322EJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF038DTA bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XQW, ENCFF807MUK 877566076 ENCODE Processing Pipeline 2917d615642419876b08dce7eda06d60 https://www.encodeproject.org/files/ENCFF038DTA/@@download/ENCFF038DTA.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF751LSF bam alignments ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XQY, ENCFF807MUK 888914959 ENCODE Processing Pipeline 1559246cf5d90dfe12fba393291121c4 https://www.encodeproject.org/files/ENCFF751LSF/@@download/ENCFF751LSF.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF937ONB bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF228GOX, ENCFF807MUK 501490274 ENCODE Processing Pipeline 5bae9d2ff7f1e8b4434cd944cd9fa4f7 https://www.encodeproject.org/files/ENCFF937ONB/@@download/ENCFF937ONB.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF908KFH bam alignments ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF135WKL, ENCFF807MUK 582824748 ENCODE Processing Pipeline cb818bf8f44ff5ec46015a2325d8d6ee https://www.encodeproject.org/files/ENCFF908KFH/@@download/ENCFF908KFH.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF816IGR bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF027BOY, ENCFF661STW, ENCFF807MUK 4148906793 ENCODE Processing Pipeline 4dec1a2bd7ab69605a7db9c7eb8593b2 https://www.encodeproject.org/files/ENCFF816IGR/@@download/ENCFF816IGR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF215KGT bam alignments ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF257GIX, ENCFF296PDU, ENCFF807MUK 4668376996 ENCODE Processing Pipeline 1ef598c20fc6d6e645a45679dac6f470 https://www.encodeproject.org/files/ENCFF215KGT/@@download/ENCFF215KGT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF411OFR bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 100 ENCFF669OSV, ENCFF706KLP, ENCFF807MUK 3896067426 ENCODE Processing Pipeline 79bdc6e4953527be26e267547961263f https://www.encodeproject.org/files/ENCFF411OFR/@@download/ENCFF411OFR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF155TVA bam alignments ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 100 ENCFF283GNM, ENCFF451RCX, ENCFF807MUK 4345660446 ENCODE Processing Pipeline c42caf7d595fab6a417ef0c14717fc5c https://www.encodeproject.org/files/ENCFF155TVA/@@download/ENCFF155TVA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF209PKW bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF324UEF, ENCFF807MUK 2419783793 ENCODE Processing Pipeline 20b9fa4238217d3d463ee5777f9b21c5 https://www.encodeproject.org/files/ENCFF209PKW/@@download/ENCFF209PKW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF476MIY bam alignments ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF351GCF, ENCFF807MUK 743610639 ENCODE Processing Pipeline 1982bb0e0b0310d2d4162bda5b753734 https://www.encodeproject.org/files/ENCFF476MIY/@@download/ENCFF476MIY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF842XJL bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 100 ENCFF055CQR, ENCFF784TRG, ENCFF807MUK 5130249113 ENCODE Processing Pipeline b316bf0075d4364a34280c6a5d2b108a https://www.encodeproject.org/files/ENCFF842XJL/@@download/ENCFF842XJL.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF502QVA bam alignments ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 100 ENCFF807MUK, ENCFF909TZW, ENCFF999MLQ 5258568488 ENCODE Processing Pipeline 854ccb16c87ef1a9c87e8ecb23031739 https://www.encodeproject.org/files/ENCFF502QVA/@@download/ENCFF502QVA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF180CLD bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF601UZA, ENCFF807MUK, ENCFF895TXD 6369946823 ENCODE Processing Pipeline 4d6b70acebefd8d41b8cb57970d10c39 https://www.encodeproject.org/files/ENCFF180CLD/@@download/ENCFF180CLD.bam hg19 released ENCFF320TZV bam alignments ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF653QNP, ENCFF807MUK, ENCFF955QVT 6071159678 ENCODE Processing Pipeline 468fcb78d20150814fe2cdedcac96910 https://www.encodeproject.org/files/ENCFF320TZV/@@download/ENCFF320TZV.bam hg19 released ENCFF957IJL bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF002BBY, ENCFF807MUK 1304737031 ENCODE Processing Pipeline 76e8c2c0c03b5edfd9c85ee58ca02ce8 https://www.encodeproject.org/files/ENCFF957IJL/@@download/ENCFF957IJL.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF496TSK bam alignments ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF002ATD, ENCFF807MUK 642531533 ENCODE Processing Pipeline ee145fd1eff2444ceb737f4c9121095b https://www.encodeproject.org/files/ENCFF496TSK/@@download/ENCFF496TSK.bam hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF845YHI bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EET, ENCFF807MUK 950173273 ENCODE Processing Pipeline e3275b8eb5a30f4bdeb1e56d60815834 https://www.encodeproject.org/files/ENCFF845YHI/@@download/ENCFF845YHI.bam hg19 released low read length, low read depth ENCFF899GZH bam alignments ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EES, ENCFF807MUK 780721574 ENCODE Processing Pipeline 4be78d74dc41328f0db8180d9d159b9f https://www.encodeproject.org/files/ENCFF899GZH/@@download/ENCFF899GZH.bam hg19 released low read length, low read depth ENCFF581FCG bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 6 100 ENCFF044ZTQ, ENCFF119GEQ, ENCFF807MUK 2012324178 ENCODE Processing Pipeline c97865a67a8c9195574c03877d5a3a11 https://www.encodeproject.org/files/ENCFF581FCG/@@download/ENCFF581FCG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF514PZW bam alignments ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human DNA False 2017-01-31 ENCODE 5 100 ENCFF526SSV, ENCFF807MUK, ENCFF953OIR 1781225085 ENCODE Processing Pipeline bbe8c615efc2faa725f6a9a64d2b1367 https://www.encodeproject.org/files/ENCFF514PZW/@@download/ENCFF514PZW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF413UYN bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF385CVM, ENCFF807MUK, ENCFF838ILR 4957719538 ENCODE Processing Pipeline 02a55d7d096f626ddbf2e4c8ec9eaae1 https://www.encodeproject.org/files/ENCFF413UYN/@@download/ENCFF413UYN.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF314DOH bam alignments ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF144MVR, ENCFF549XBX, ENCFF807MUK 5116022440 ENCODE Processing Pipeline c3fe080dfb7662073fe385c2679dc234 https://www.encodeproject.org/files/ENCFF314DOH/@@download/ENCFF314DOH.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF766AOQ bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 36 ENCFF254OVT, ENCFF758IZH, ENCFF807MUK 1176658034 ENCODE Processing Pipeline d1ec8e4b827fc6db9a249b0569970875 https://www.encodeproject.org/files/ENCFF766AOQ/@@download/ENCFF766AOQ.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF394JPJ bam alignments ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 36 ENCFF807MUK, ENCFF922GDY 967704432 ENCODE Processing Pipeline 8a02154d7b4e571205a80b1217edf855 https://www.encodeproject.org/files/ENCFF394JPJ/@@download/ENCFF394JPJ.bam hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF820VHQ bam alignments ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF163KIH, ENCFF336GML, ENCFF807MUK 3081674956 ENCODE Processing Pipeline 09d6f6b0e95b04a2266c2dd3002e3367 https://www.encodeproject.org/files/ENCFF820VHQ/@@download/ENCFF820VHQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF270QLE bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGB, ENCFF807MUK 608017062 ENCODE Processing Pipeline 9c8c2ca9db9aca016e9ad628d0dc4f32 https://www.encodeproject.org/files/ENCFF270QLE/@@download/ENCFF270QLE.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF078MCO bam alignments ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGC, ENCFF807MUK 443226439 ENCODE Processing Pipeline bd85f3c6f86f8dc1636864c4231b5d18 https://www.encodeproject.org/files/ENCFF078MCO/@@download/ENCFF078MCO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780VWO bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 100 ENCFF599YET, ENCFF807MUK, ENCFF812RLF 2290410797 ENCODE Processing Pipeline 6977d9734da67ecdad52ddb133dccb5a https://www.encodeproject.org/files/ENCFF780VWO/@@download/ENCFF780VWO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF579YLW bam alignments ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 100 ENCFF636DBM, ENCFF803PGO, ENCFF807MUK 5148340015 ENCODE Processing Pipeline 4a885a41f1438019504d6c8444d1d962 https://www.encodeproject.org/files/ENCFF579YLW/@@download/ENCFF579YLW.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF239CYG bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 100 ENCFF149OFF, ENCFF199RYE, ENCFF807MUK 6937084760 ENCODE Processing Pipeline bd69446d9bfdfae2325fbc11b867bc58 https://www.encodeproject.org/files/ENCFF239CYG/@@download/ENCFF239CYG.bam hg19 released experiment not submitted to GEO ENCFF062EUT bam alignments ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF384KWM, ENCFF511CNY, ENCFF807MUK 5348612116 ENCODE Processing Pipeline ea25c0a6e21d7efc45e6fc460e8de6fc https://www.encodeproject.org/files/ENCFF062EUT/@@download/ENCFF062EUT.bam hg19 released experiment not submitted to GEO ENCFF139WHV bam alignments ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 76 ENCFF304ODL, ENCFF807MUK, ENCFF837GHV 2718898897 ENCODE Processing Pipeline 898f369971af9af4bff9ab82c747b01c https://www.encodeproject.org/files/ENCFF139WHV/@@download/ENCFF139WHV.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF947RUP bam alignments ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGS, ENCFF807MUK 305144329 ENCODE Processing Pipeline 034a481bf0fde8637d34261c27ecd28f https://www.encodeproject.org/files/ENCFF947RUP/@@download/ENCFF947RUP.bam hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF347OMX bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF204KOO, ENCFF668LKZ, ENCFF807MUK 4428555460 ENCODE Processing Pipeline c2d869f442ec1b3d5ff51190572b1878 https://www.encodeproject.org/files/ENCFF347OMX/@@download/ENCFF347OMX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF948BJB bam alignments ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF033ZFD, ENCFF753KIN, ENCFF807MUK 6146212057 ENCODE Processing Pipeline 20fc7f09dfe3d40e799055f8dd1350e4 https://www.encodeproject.org/files/ENCFF948BJB/@@download/ENCFF948BJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF046GTS bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 100 ENCFF460XNN, ENCFF807MUK, ENCFF924MPJ 5585705600 ENCODE Processing Pipeline 98cab4bb7628807db82a6113b02293d1 https://www.encodeproject.org/files/ENCFF046GTS/@@download/ENCFF046GTS.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF104TRE bam alignments ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 100 ENCFF572KOD, ENCFF807MUK, ENCFF860XRV 6322715885 ENCODE Processing Pipeline b6403961b83b488f21d502318cb3e4f1 https://www.encodeproject.org/files/ENCFF104TRE/@@download/ENCFF104TRE.bam hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF616FYK bam alignments ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 100 ENCFF246RFD, ENCFF641KSE, ENCFF807MUK 2827076655 ENCODE Processing Pipeline de98e02b8dd108a8b6c8e9dca4aa7220 https://www.encodeproject.org/files/ENCFF616FYK/@@download/ENCFF616FYK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NDC bam alignments ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NDP 1316465691 Richard Myers, HAIB 1be84dfb930067109b70f4dabf8d134d https://www.encodeproject.org/files/ENCFF000NDC/@@download/ENCFF000NDC.bam hg19 released biological replicates with identical biosample ENCFF000NDJ bam alignments ENCSR000BTJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NDT 1978098018 Richard Myers, HAIB 17562496b8f066c98adf304786b4b8a2 https://www.encodeproject.org/files/ENCFF000NDJ/@@download/ENCFF000NDJ.bam hg19 released biological replicates with identical biosample ENCFF475POO bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 100 ENCFF222FXU, ENCFF687HHR, ENCFF807MUK 2985622814 ENCODE Processing Pipeline 4b0204c763f02d336cf636618046ef54 https://www.encodeproject.org/files/ENCFF475POO/@@download/ENCFF475POO.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF572MZM bam alignments ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 100 ENCFF015LUT, ENCFF424OOE, ENCFF807MUK 3770325300 ENCODE Processing Pipeline af01170edff6dc5163e2d69bae7573e3 https://www.encodeproject.org/files/ENCFF572MZM/@@download/ENCFF572MZM.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF268VSP bam alignments ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF807MUK, ENCFF837IQA, ENCFF982FBQ 5726441242 ENCODE Processing Pipeline d4fcfd119bd877798b46db8c04b6e501 https://www.encodeproject.org/files/ENCFF268VSP/@@download/ENCFF268VSP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF931AAW bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDS, ENCFF807MUK 757712527 ENCODE Processing Pipeline b93e771c48c8c59a50cbbdbb7b925438 https://www.encodeproject.org/files/ENCFF931AAW/@@download/ENCFF931AAW.bam hg19 released low read length, low read depth ENCFF871YZO bam alignments ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDN, ENCFF807MUK 720560153 ENCODE Processing Pipeline 6afe7068cf8dcb8145d47288e2fa7402 https://www.encodeproject.org/files/ENCFF871YZO/@@download/ENCFF871YZO.bam hg19 released low read length, low read depth ENCFF394VHK bam alignments ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF071CTT, ENCFF174GER, ENCFF807MUK 3710557243 ENCODE Processing Pipeline 073f7f5c158ca5f6b2a4e76ec4fbc3b5 https://www.encodeproject.org/files/ENCFF394VHK/@@download/ENCFF394VHK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF386INF bam alignments ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 100 ENCFF099PGD, ENCFF404VFO, ENCFF724RNY, ENCFF807MUK, ENCFF922ULN 3353162817 ENCODE Processing Pipeline 3fa8aaa9bed1d14ca9d235f8a1af0876 https://www.encodeproject.org/files/ENCFF386INF/@@download/ENCFF386INF.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF171WZW bam alignments ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF509ERN, ENCFF807MUK, ENCFF943KNW 2895577346 ENCODE Processing Pipeline ece4e2b736fa8c72e6a7ac8b1bebd56d https://www.encodeproject.org/files/ENCFF171WZW/@@download/ENCFF171WZW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF036MJJ bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 36 ENCFF540AUD, ENCFF807MUK 544447933 ENCODE Processing Pipeline f25c8b78b0f6b87a9471194e6752b631 https://www.encodeproject.org/files/ENCFF036MJJ/@@download/ENCFF036MJJ.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF205MUK bam alignments ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 36 ENCFF036XWQ, ENCFF807MUK 533297632 ENCODE Processing Pipeline b20066159c96bb14d9cac1403238cc37 https://www.encodeproject.org/files/ENCFF205MUK/@@download/ENCFF205MUK.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF474MOK bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGR, ENCFF807MUK 597562496 ENCODE Processing Pipeline 62bb55934a2459aa37fb2a30281fab5b https://www.encodeproject.org/files/ENCFF474MOK/@@download/ENCFF474MOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF602BPO bam alignments ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGT, ENCFF807MUK 899936915 ENCODE Processing Pipeline e67e47937d43dff66a0f2f5c228ab1df https://www.encodeproject.org/files/ENCFF602BPO/@@download/ENCFF602BPO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF177TLU bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF414LZB, ENCFF785LEU, ENCFF807MUK 4445092180 ENCODE Processing Pipeline 2df5e29e7cf19b384e4e43c829d59d91 https://www.encodeproject.org/files/ENCFF177TLU/@@download/ENCFF177TLU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF026ARN bam alignments ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF497UCW, ENCFF807MUK, ENCFF852WDA 4593269719 ENCODE Processing Pipeline c448f1a6755096c42e19528242739402 https://www.encodeproject.org/files/ENCFF026ARN/@@download/ENCFF026ARN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF910PEO bam alignments ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF112BSI, ENCFF160QJZ, ENCFF807MUK 1545199710 ENCODE Processing Pipeline 975ceaf2f2906c68d63150766a7f4cf9 https://www.encodeproject.org/files/ENCFF910PEO/@@download/ENCFF910PEO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF671AZH bam alignments ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF510UIJ, ENCFF606RQN, ENCFF807MUK 4008251689 ENCODE Processing Pipeline 67b9491eca60d5f712944c4e557336f8 https://www.encodeproject.org/files/ENCFF671AZH/@@download/ENCFF671AZH.bam hg19 released antibody characterized with exemption ENCFF822IOM bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 100 ENCFF247EXO, ENCFF608KPI, ENCFF807MUK 4450536013 ENCODE Processing Pipeline 46768dbdda20494cf6df07968a3ae348 https://www.encodeproject.org/files/ENCFF822IOM/@@download/ENCFF822IOM.bam hg19 released ENCFF503QER bam alignments ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 100 ENCFF598JRF, ENCFF651TLL, ENCFF807MUK 4076940989 ENCODE Processing Pipeline fae25d1aab1ed9833b71a8a2385762f3 https://www.encodeproject.org/files/ENCFF503QER/@@download/ENCFF503QER.bam hg19 released ENCFF162VTZ bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF002BFE, ENCFF807MUK 992529429 ENCODE Processing Pipeline 57ad7a86e9d18a9391f565e89355ff08 https://www.encodeproject.org/files/ENCFF162VTZ/@@download/ENCFF162VTZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF373SVA bam alignments ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF002BFF, ENCFF807MUK 1506648939 ENCODE Processing Pipeline 4a3501f52eff5bbe52de34591e294b29 https://www.encodeproject.org/files/ENCFF373SVA/@@download/ENCFF373SVA.bam hg19 released low read depth, antibody characterized with exemption ENCFF241VLD bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 100 ENCFF481LLT, ENCFF807MUK, ENCFF887YKT 4250594376 ENCODE Processing Pipeline 448a7fe3846c8cad35e5b19f4716bae7 https://www.encodeproject.org/files/ENCFF241VLD/@@download/ENCFF241VLD.bam hg19 released ENCFF219QMR bam alignments ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF176ERK, ENCFF178JHO, ENCFF807MUK 4763958384 ENCODE Processing Pipeline e038f88a302588e8425a1b83a564f6dd https://www.encodeproject.org/files/ENCFF219QMR/@@download/ENCFF219QMR.bam hg19 released ENCFF779SGY bam alignments ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 100 ENCFF040PJI, ENCFF042GGM, ENCFF143XEG, ENCFF757JXI, ENCFF807MUK 8560220015 ENCODE Processing Pipeline 414e5f96ce0bbffbcaa6bdeca818ff96 https://www.encodeproject.org/files/ENCFF779SGY/@@download/ENCFF779SGY.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF921SZK bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GZJ, ENCFF807MUK 819293579 ENCODE Processing Pipeline dd2800e2199e0e6f388363cf0d2ea9ae https://www.encodeproject.org/files/ENCFF921SZK/@@download/ENCFF921SZK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF170UJD bam alignments ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GZI, ENCFF807MUK 775155459 ENCODE Processing Pipeline f992a1cf0db601221e44039cc98e3aa2 https://www.encodeproject.org/files/ENCFF170UJD/@@download/ENCFF170UJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF124FTL bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 100 ENCFF210SAO, ENCFF807MUK, ENCFF827KUP 4648289429 ENCODE Processing Pipeline 1ab0f8a2328a04478382657600971e6d https://www.encodeproject.org/files/ENCFF124FTL/@@download/ENCFF124FTL.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF251ZWC bam alignments ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 100 ENCFF595RYN, ENCFF753GKC, ENCFF807MUK 4603636434 ENCODE Processing Pipeline 88ec556cb9d1dd28d9fef814066b527c https://www.encodeproject.org/files/ENCFF251ZWC/@@download/ENCFF251ZWC.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF248VFM bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAD, ENCFF807MUK 1353040105 ENCODE Processing Pipeline ef2bb40ae907ad4c65c11066ee86657a https://www.encodeproject.org/files/ENCFF248VFM/@@download/ENCFF248VFM.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF628LRK bam alignments ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAB, ENCFF807MUK 1273091339 ENCODE Processing Pipeline 9f1151148893c1df0cb606c73b6da207 https://www.encodeproject.org/files/ENCFF628LRK/@@download/ENCFF628LRK.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF865GUF bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 36 ENCFF002EWX, ENCFF807MUK 480592807 ENCODE Processing Pipeline 6e9db848c29e647135bc7093416f09a5 https://www.encodeproject.org/files/ENCFF865GUF/@@download/ENCFF865GUF.bam hg19 released low read length, low read depth ENCFF312DGQ bam alignments ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 36 ENCFF002EXE, ENCFF807MUK 882163439 ENCODE Processing Pipeline 1f68b645b5a75e2760520facee322e5a https://www.encodeproject.org/files/ENCFF312DGQ/@@download/ENCFF312DGQ.bam hg19 released low read length, low read depth ENCFF523IZS bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF097PYZ, ENCFF528YMC, ENCFF807MUK 4463950105 ENCODE Processing Pipeline d31a48a8641ab6f096b63a325dae8e01 https://www.encodeproject.org/files/ENCFF523IZS/@@download/ENCFF523IZS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF223KZR bam alignments ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF044XFM, ENCFF807MUK, ENCFF939GNW 4579009658 ENCODE Processing Pipeline fdf85f01ea1021b0349bfd9cfd934489 https://www.encodeproject.org/files/ENCFF223KZR/@@download/ENCFF223KZR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF601YGX bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF648WWC, ENCFF807MUK, ENCFF869EFH 4264479876 ENCODE Processing Pipeline 900ef4bf5caa6fbe617d7f64a78b9d92 https://www.encodeproject.org/files/ENCFF601YGX/@@download/ENCFF601YGX.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF255GSR bam alignments ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF028VGN, ENCFF807MUK, ENCFF863FQO 6377314258 ENCODE Processing Pipeline edfa1838fe923f6ec7073dd9e7fd53c5 https://www.encodeproject.org/files/ENCFF255GSR/@@download/ENCFF255GSR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF000NNY bam alignments ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOM 1423008155 Richard Myers, HAIB ec085af9afcb3971c9114585050a7c22 https://www.encodeproject.org/files/ENCFF000NNY/@@download/ENCFF000NNY.bam hg19 released biological replicates with identical biosample ENCFF000NOA bam alignments ENCSR000BUU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOS 2080893374 Richard Myers, HAIB 9470cd4fc9606c84d7aa539aa209d20a https://www.encodeproject.org/files/ENCFF000NOA/@@download/ENCFF000NOA.bam hg19 released biological replicates with identical biosample ENCFF247KXK bam alignments ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF073GNS, ENCFF807MUK, ENCFF975DHQ 5334536698 ENCODE Processing Pipeline b15f096538dcb58077750e1aac2df707 https://www.encodeproject.org/files/ENCFF247KXK/@@download/ENCFF247KXK.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF985MWI bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 100 ENCFF158FFU, ENCFF646AFJ, ENCFF807MUK 4093992914 ENCODE Processing Pipeline cbb889c27743353c6b3eac5324505c19 https://www.encodeproject.org/files/ENCFF985MWI/@@download/ENCFF985MWI.bam hg19 released borderline replicate concordance ENCFF473JXX bam alignments ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 100 ENCFF807MUK, ENCFF911VAQ, ENCFF993ZYN 4084540406 ENCODE Processing Pipeline 109ae014d715dc0902c613223aea9a99 https://www.encodeproject.org/files/ENCFF473JXX/@@download/ENCFF473JXX.bam hg19 released borderline replicate concordance ENCFF614UDN bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF558BIU, ENCFF807MUK, ENCFF822SXZ 5069294781 ENCODE Processing Pipeline e5f613bc7e5a63ece10efe8b33cda304 https://www.encodeproject.org/files/ENCFF614UDN/@@download/ENCFF614UDN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF677ERR bam alignments ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF342RDH, ENCFF807MUK, ENCFF908JVL 4429269113 ENCODE Processing Pipeline 5104d3c131460072f49259c959485ba7 https://www.encodeproject.org/files/ENCFF677ERR/@@download/ENCFF677ERR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF140IKC bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 36 ENCFF002EVY, ENCFF807MUK 646419280 ENCODE Processing Pipeline 24d6d3d455541a4a2ed935d3e2596445 https://www.encodeproject.org/files/ENCFF140IKC/@@download/ENCFF140IKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF975QZH bam alignments ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 3 36 ENCFF002EWB, ENCFF807MUK 539503794 ENCODE Processing Pipeline 84d646a6382daa7d9ee7f2b3799dc971 https://www.encodeproject.org/files/ENCFF975QZH/@@download/ENCFF975QZH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF528XYJ bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF134EEH, ENCFF234GIA, ENCFF807MUK 5283227441 ENCODE Processing Pipeline 1c100ea67419628994659b73cb5a0bdf https://www.encodeproject.org/files/ENCFF528XYJ/@@download/ENCFF528XYJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF423BHL bam alignments ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF605WDX, ENCFF741TKM, ENCFF807MUK 5346674062 ENCODE Processing Pipeline 93d0f8b65f1f00d70186f60df6a22dc3 https://www.encodeproject.org/files/ENCFF423BHL/@@download/ENCFF423BHL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF942MNR bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAM, ENCFF807MUK 717215972 ENCODE Processing Pipeline c30723360c07f05b020df20d0ec755ba https://www.encodeproject.org/files/ENCFF942MNR/@@download/ENCFF942MNR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF278BHT bam alignments ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAU, ENCFF807MUK 803304959 ENCODE Processing Pipeline 9c3f3712b0bfc7b5508a3dd1e96b8150 https://www.encodeproject.org/files/ENCFF278BHT/@@download/ENCFF278BHT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF638LOJ bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF040FWR, ENCFF807MUK, ENCFF898JXS 4086589840 ENCODE Processing Pipeline 31d95da654d2437bf5ff97745a07997b https://www.encodeproject.org/files/ENCFF638LOJ/@@download/ENCFF638LOJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF842YIW bam alignments ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF251PNI, ENCFF807MUK, ENCFF860EDN 4132502181 ENCODE Processing Pipeline dda660d0c14de0b9c3a5e07bd1678df5 https://www.encodeproject.org/files/ENCFF842YIW/@@download/ENCFF842YIW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF224VJS bam alignments ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF010QKZ, ENCFF232BIX, ENCFF807MUK 4019085541 ENCODE Processing Pipeline 4fe15d0a6fcb0fb20cb636e7df94d1ba https://www.encodeproject.org/files/ENCFF224VJS/@@download/ENCFF224VJS.bam hg19 released antibody characterized with exemption ENCFF000XDY bam alignments ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XEI 294290615 Peggy Farnham, USC 780ae2365f8065b62e6c080ff595aaf0 https://www.encodeproject.org/files/ENCFF000XDY/@@download/ENCFF000XDY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEA bam alignments ENCSR000EVI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XEM 359081507 Peggy Farnham, USC d8198cea5e8bf31917b9fce31fdf012d https://www.encodeproject.org/files/ENCFF000XEA/@@download/ENCFF000XEA.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF723EYG bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF100DYO, ENCFF807MUK, ENCFF862UVE 4478891599 ENCODE Processing Pipeline 6f339204bb3d597064584f2a657d94d6 https://www.encodeproject.org/files/ENCFF723EYG/@@download/ENCFF723EYG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF617GJF bam alignments ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF616ZBL, ENCFF641THN, ENCFF807MUK 5404370971 ENCODE Processing Pipeline eb919d64998fc99a28f61ca96263c9c9 https://www.encodeproject.org/files/ENCFF617GJF/@@download/ENCFF617GJF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF712AJA bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 100 ENCFF807MUK, ENCFF969VJB, ENCFF971IAU 5387464619 ENCODE Processing Pipeline 72e637046005aa98341316e9e94ac0e9 https://www.encodeproject.org/files/ENCFF712AJA/@@download/ENCFF712AJA.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF020EIS bam alignments ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 100 ENCFF094OAY, ENCFF788CVF, ENCFF807MUK 6331599718 ENCODE Processing Pipeline 17719ea94da902f6b31a6425b9b70d30 https://www.encodeproject.org/files/ENCFF020EIS/@@download/ENCFF020EIS.bam hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF064TLT bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF439KQS, ENCFF784WEP, ENCFF807MUK 3943890673 ENCODE Processing Pipeline 474693cd55ceaf193b8aec379ecbdea7 https://www.encodeproject.org/files/ENCFF064TLT/@@download/ENCFF064TLT.bam hg19 released experiment not submitted to GEO ENCFF367DJA bam alignments ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 3 101 ENCFF531XCH, ENCFF807MUK, ENCFF914HTT 3884694510 ENCODE Processing Pipeline 2cddba8621c625889ede22954c35c2d6 https://www.encodeproject.org/files/ENCFF367DJA/@@download/ENCFF367DJA.bam hg19 released experiment not submitted to GEO ENCFF319QTJ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EAO, ENCFF807MUK 922732709 ENCODE Processing Pipeline 14690f3d5d16f6523798787c782a02b2 https://www.encodeproject.org/files/ENCFF319QTJ/@@download/ENCFF319QTJ.bam hg19 released low read length ENCFF370WJQ bam alignments ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAN, ENCFF807MUK 953526907 ENCODE Processing Pipeline 019e2b6dc8da51b97b6a0ce7a6988051 https://www.encodeproject.org/files/ENCFF370WJQ/@@download/ENCFF370WJQ.bam hg19 released low read length ENCFF542YIP bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF344XLB, ENCFF444LAR, ENCFF807MUK 3377503030 ENCODE Processing Pipeline 92ab8fccacd995c5c195846ecbc3b275 https://www.encodeproject.org/files/ENCFF542YIP/@@download/ENCFF542YIP.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF593HGL bam alignments ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF189ZSY, ENCFF262XBU, ENCFF807MUK 4056124465 ENCODE Processing Pipeline 67d659fe1d32eb9d8bef289920787618 https://www.encodeproject.org/files/ENCFF593HGL/@@download/ENCFF593HGL.bam hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF324BHS bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF015KAY, ENCFF414KXU, ENCFF807MUK 5572435017 ENCODE Processing Pipeline dd1a6e90ad5cddb04e02cb3569066a9b https://www.encodeproject.org/files/ENCFF324BHS/@@download/ENCFF324BHS.bam hg19 released ENCFF867YPG bam alignments ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF035BJT, ENCFF778EKH, ENCFF807MUK 5310895400 ENCODE Processing Pipeline 55ae938fcc7c00af25ba647926305736 https://www.encodeproject.org/files/ENCFF867YPG/@@download/ENCFF867YPG.bam hg19 released ENCFF204XLM bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 100 ENCFF077SPQ, ENCFF383EJJ, ENCFF807MUK 4564416436 ENCODE Processing Pipeline 71f5335d0d8406345f879f3227e8f545 https://www.encodeproject.org/files/ENCFF204XLM/@@download/ENCFF204XLM.bam hg19 released ENCFF158LEE bam alignments ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 100 ENCFF086VLI, ENCFF397FZD, ENCFF807MUK 4318343333 ENCODE Processing Pipeline 3a2b441dbf101330824363504ddf2bf8 https://www.encodeproject.org/files/ENCFF158LEE/@@download/ENCFF158LEE.bam hg19 released ENCFF572HWU bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 100 ENCFF807MUK, ENCFF843QDR, ENCFF929RZN 4271305115 ENCODE Processing Pipeline e7d53a9d3b3d90e5fff1ee0c5489d9d0 https://www.encodeproject.org/files/ENCFF572HWU/@@download/ENCFF572HWU.bam hg19 released borderline replicate concordance ENCFF824TEZ bam alignments ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 100 ENCFF461VFX, ENCFF588IKS, ENCFF807MUK 5136765649 ENCODE Processing Pipeline b50b54586734c44b4fdc9eab54559d25 https://www.encodeproject.org/files/ENCFF824TEZ/@@download/ENCFF824TEZ.bam hg19 released borderline replicate concordance ENCFF736OGN bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 76 ENCFF807MUK, ENCFF965ZWE 1219914247 ENCODE Processing Pipeline dfa22dc33fd495303e71327590f07b24 https://www.encodeproject.org/files/ENCFF736OGN/@@download/ENCFF736OGN.bam hg19 released borderline replicate concordance ENCFF035LOI bam alignments ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 75 ENCFF100FQP, ENCFF807MUK 1515046762 ENCODE Processing Pipeline 444eb0c4359be4c60bc34b8887b5b53b https://www.encodeproject.org/files/ENCFF035LOI/@@download/ENCFF035LOI.bam hg19 released borderline replicate concordance ENCFF525DEV bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKM, ENCFF807MUK 453272785 ENCODE Processing Pipeline d88afa83d2ef99db0c1600d37134f0ec https://www.encodeproject.org/files/ENCFF525DEV/@@download/ENCFF525DEV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF656BEN bam alignments ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKL, ENCFF807MUK 527379667 ENCODE Processing Pipeline 0f1f62598cf379166116639429821da5 https://www.encodeproject.org/files/ENCFF656BEN/@@download/ENCFF656BEN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF742ATC bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 50 ENCFF040XLF, ENCFF807MUK 1280192595 ENCODE Processing Pipeline 24690e671e00a0aedade454c7a4f4a6a https://www.encodeproject.org/files/ENCFF742ATC/@@download/ENCFF742ATC.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF629SZV bam alignments ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 50 ENCFF300NGT, ENCFF807MUK 759028555 ENCODE Processing Pipeline ddc715907acfed09a1f86ead24a9a447 https://www.encodeproject.org/files/ENCFF629SZV/@@download/ENCFF629SZV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF917NVM bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDK, ENCFF807MUK 937589188 ENCODE Processing Pipeline 913a75da3b0b9927cc8dcb5a3ac6635d https://www.encodeproject.org/files/ENCFF917NVM/@@download/ENCFF917NVM.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF604LKK bam alignments ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDM, ENCFF807MUK 840982575 ENCODE Processing Pipeline 36d1b54c652b08b80a0cc649089dcd0e https://www.encodeproject.org/files/ENCFF604LKK/@@download/ENCFF604LKK.bam hg19 released low read length, borderline replicate concordance, low read depth ENCFF735MSB bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OUX, ENCFF807MUK 368670106 ENCODE Processing Pipeline 721ecca1b71e307e8f383f5a46a6bb89 https://www.encodeproject.org/files/ENCFF735MSB/@@download/ENCFF735MSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF714CGS bam alignments ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OUU, ENCFF807MUK 554170145 ENCODE Processing Pipeline 0e265c6a3802cf99c64a6c768a9abf5e https://www.encodeproject.org/files/ENCFF714CGS/@@download/ENCFF714CGS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF051LGR bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEF, ENCFF807MUK 633038741 ENCODE Processing Pipeline dff0f81cdc41b536b232db8e327ece8a https://www.encodeproject.org/files/ENCFF051LGR/@@download/ENCFF051LGR.bam hg19 released low read length, low read depth ENCFF313JJC bam alignments ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEA, ENCFF807MUK 746449740 ENCODE Processing Pipeline c74a9d76ff211b8a04526e39d14c3df2 https://www.encodeproject.org/files/ENCFF313JJC/@@download/ENCFF313JJC.bam hg19 released low read length, low read depth ENCFF262KHM bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 50 ENCFF324QQE, ENCFF807MUK 1033909070 ENCODE Processing Pipeline e03bd99038584a1d067d42071b11741d https://www.encodeproject.org/files/ENCFF262KHM/@@download/ENCFF262KHM.bam hg19 released low read depth, antibody characterized with exemption ENCFF437VCI bam alignments ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 50 ENCFF188ZWJ, ENCFF807MUK 1203001510 ENCODE Processing Pipeline 444dad331cc493aa1a3a0e1a0f91737c https://www.encodeproject.org/files/ENCFF437VCI/@@download/ENCFF437VCI.bam hg19 released low read depth, antibody characterized with exemption ENCFF000XWK bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XWT 83822666 Sherman Weissman, Yale 6246b73cfc265ef307969c4bb47580b5 https://www.encodeproject.org/files/ENCFF000XWK/@@download/ENCFF000XWK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWM bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWW 151857179 Sherman Weissman, Yale 3c167e6efd76782a5f4ca43915f4f602 https://www.encodeproject.org/files/ENCFF000XWM/@@download/ENCFF000XWM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XWO bam alignments ENCSR000EZQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XWV 213225436 Sherman Weissman, Yale 47ddd5e1cde6222ed772bc1eeb7a2768 https://www.encodeproject.org/files/ENCFF000XWO/@@download/ENCFF000XWO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF424VMX bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 36 ENCFF002EVQ, ENCFF807MUK 885256915 ENCODE Processing Pipeline 1e5ec1a996dc81bf8823bfae8920507c https://www.encodeproject.org/files/ENCFF424VMX/@@download/ENCFF424VMX.bam hg19 released low read length, low read depth ENCFF451LLN bam alignments ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 36 ENCFF002EVN, ENCFF807MUK 712308081 ENCODE Processing Pipeline b9b8faa619043959c5f3e555f8178370 https://www.encodeproject.org/files/ENCFF451LLN/@@download/ENCFF451LLN.bam hg19 released low read length, low read depth ENCFF003ABO bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF443KQR, ENCFF807MUK, ENCFF862RDJ 6728766503 ENCODE Processing Pipeline 6b39b2c0ff2ced048947041a9fb973da https://www.encodeproject.org/files/ENCFF003ABO/@@download/ENCFF003ABO.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF794JSD bam alignments ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF728MYT, ENCFF807MUK, ENCFF834FPN 6307414135 ENCODE Processing Pipeline 5c95da17a34e7c809c9c02848ba8302d https://www.encodeproject.org/files/ENCFF794JSD/@@download/ENCFF794JSD.bam hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF714MWU bam alignments ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF454XVM, ENCFF807MUK, ENCFF895LBD 3924718920 ENCODE Processing Pipeline 6a211702e694c9668389c6451b285006 https://www.encodeproject.org/files/ENCFF714MWU/@@download/ENCFF714MWU.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF584BRF bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VUU, ENCFF807MUK 304486465 ENCODE Processing Pipeline e605631568877c1172825b6dabc03f5a https://www.encodeproject.org/files/ENCFF584BRF/@@download/ENCFF584BRF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF119SGJ bam alignments ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VUW, ENCFF807MUK 538888360 ENCODE Processing Pipeline 23a5e8faa711ac4c449e7a135b621adc https://www.encodeproject.org/files/ENCFF119SGJ/@@download/ENCFF119SGJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF332ZMN bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 36 ENCFF799AHQ, ENCFF807MUK 577949912 ENCODE Processing Pipeline a6bf839511a7ff367e227cd1e4cde733 https://www.encodeproject.org/files/ENCFF332ZMN/@@download/ENCFF332ZMN.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF463DEV bam alignments ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 36 ENCFF807MUK, ENCFF909CPR 544042009 ENCODE Processing Pipeline 8f397e7a0450701f6e3a57ab3e9ed1ff https://www.encodeproject.org/files/ENCFF463DEV/@@download/ENCFF463DEV.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF373IJK bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF176RUD, ENCFF793URQ, ENCFF807MUK 2603051587 ENCODE Processing Pipeline 2e09ab178a7d229421b1120bd114b79c https://www.encodeproject.org/files/ENCFF373IJK/@@download/ENCFF373IJK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF810SIO bam alignments ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF410UIX, ENCFF807MUK, ENCFF932THV 3664764124 ENCODE Processing Pipeline 348f39e6abf9a2abbd8ecc08aafb9df5 https://www.encodeproject.org/files/ENCFF810SIO/@@download/ENCFF810SIO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF927PKK bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 100 ENCFF576EVC, ENCFF805AVF, ENCFF807MUK 3844588516 ENCODE Processing Pipeline fa33526f8aa55345a67204b8f8dcbc9b https://www.encodeproject.org/files/ENCFF927PKK/@@download/ENCFF927PKK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF593YDQ bam alignments ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 100 ENCFF231TGV, ENCFF276RGL, ENCFF807MUK 4283040091 ENCODE Processing Pipeline a942f1b8451bd8f935549f17f7bc455a https://www.encodeproject.org/files/ENCFF593YDQ/@@download/ENCFF593YDQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF283OJW bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF279ILV, ENCFF622VFM, ENCFF807MUK 3767899679 ENCODE Processing Pipeline cb65799fc49c071ffaad93109639e4b5 https://www.encodeproject.org/files/ENCFF283OJW/@@download/ENCFF283OJW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF458NRE bam alignments ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF586TBV, ENCFF807MUK, ENCFF889XNL 7579306749 ENCODE Processing Pipeline b42ff516e79d69f417468feece97d64e https://www.encodeproject.org/files/ENCFF458NRE/@@download/ENCFF458NRE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF299MOY bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 3 100 ENCFF163KYP, ENCFF479BPN, ENCFF807MUK 2911570029 ENCODE Processing Pipeline 27220b9b10d7b68c2e7fb04d6fe9963f https://www.encodeproject.org/files/ENCFF299MOY/@@download/ENCFF299MOY.bam hg19 released low read depth ENCFF891VNH bam alignments ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF361RFX, ENCFF786WVF, ENCFF807MUK 5465801656 ENCODE Processing Pipeline 722b97daacede759fe34a8347c1b7616 https://www.encodeproject.org/files/ENCFF891VNH/@@download/ENCFF891VNH.bam hg19 released low read depth ENCFF628YUZ bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 100 ENCFF181GHZ, ENCFF421JAE, ENCFF807MUK 5000664165 ENCODE Processing Pipeline 380d9699d359e99c553707ddd501b36a https://www.encodeproject.org/files/ENCFF628YUZ/@@download/ENCFF628YUZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF580MYI bam alignments ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 3 101 ENCFF308STS, ENCFF312YAG, ENCFF807MUK 4480170587 ENCODE Processing Pipeline 58f243eb55a109cd8bf6f1dc1a772edf https://www.encodeproject.org/files/ENCFF580MYI/@@download/ENCFF580MYI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF770FOE bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 100 ENCFF654EXQ, ENCFF807MUK, ENCFF996BVX 5811273006 ENCODE Processing Pipeline c6cf2eec682891f43f26e4248cd0ae0c https://www.encodeproject.org/files/ENCFF770FOE/@@download/ENCFF770FOE.bam hg19 released ENCFF978JTT bam alignments ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 3 100 ENCFF228EWB, ENCFF807MUK, ENCFF922VLO 5117185192 ENCODE Processing Pipeline 668425614033a147a739237807434f83 https://www.encodeproject.org/files/ENCFF978JTT/@@download/ENCFF978JTT.bam hg19 released ENCFF027GJA bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUD, ENCFF807MUK 960290199 ENCODE Processing Pipeline 89fd5f4b7dc18f2dceb31934b30a8aef https://www.encodeproject.org/files/ENCFF027GJA/@@download/ENCFF027GJA.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF656QRB bam alignments ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUO, ENCFF807MUK 2008057553 ENCODE Processing Pipeline 466d6fd64590e1facd80e73bd440312a https://www.encodeproject.org/files/ENCFF656QRB/@@download/ENCFF656QRB.bam hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF560UCX bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF752NOE, ENCFF807MUK, ENCFF856HJS 4959514440 ENCODE Processing Pipeline e9868cab7c8985a6ccd06cfa6a56ca9d https://www.encodeproject.org/files/ENCFF560UCX/@@download/ENCFF560UCX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF181SRH bam alignments ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF429EZN, ENCFF767SIE, ENCFF807MUK 5050560025 ENCODE Processing Pipeline fdc55ed0eaf61eaa70f2fd8597b04004 https://www.encodeproject.org/files/ENCFF181SRH/@@download/ENCFF181SRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF647YII bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWI, ENCFF807MUK 273529919 ENCODE Processing Pipeline cddd502e10e38a2f27fc28c4103951d7 https://www.encodeproject.org/files/ENCFF647YII/@@download/ENCFF647YII.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF784IKK bam alignments ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWK, ENCFF807MUK 873525993 ENCODE Processing Pipeline bf9c133eb736c1e2c22608e6108fbb5b https://www.encodeproject.org/files/ENCFF784IKK/@@download/ENCFF784IKK.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF579IUE bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWJ, ENCFF807MUK 435387015 ENCODE Processing Pipeline a43e608109766041372e4eb2b4135475 https://www.encodeproject.org/files/ENCFF579IUE/@@download/ENCFF579IUE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF729BKM bam alignments ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWE, ENCFF807MUK 837177050 ENCODE Processing Pipeline af7fbe940e1e536e17c75e495d48e9a0 https://www.encodeproject.org/files/ENCFF729BKM/@@download/ENCFF729BKM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF548ORK bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF522KRF, ENCFF807MUK, ENCFF891NFG 4383020422 ENCODE Processing Pipeline f46db7792fc52f371b3837112b66a158 https://www.encodeproject.org/files/ENCFF548ORK/@@download/ENCFF548ORK.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF607MTM bam alignments ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF438QQH, ENCFF807MUK, ENCFF933DHP 5504896896 ENCODE Processing Pipeline f6a9a63fe3229bc561cdc47e15f0bf0d https://www.encodeproject.org/files/ENCFF607MTM/@@download/ENCFF607MTM.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF690URW bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF165NJF, ENCFF226TLO, ENCFF807MUK 3508571922 ENCODE Processing Pipeline 9f9fbf81b0778a45d498f71db3b5ee60 https://www.encodeproject.org/files/ENCFF690URW/@@download/ENCFF690URW.bam hg19 released low read depth ENCFF208HMF bam alignments ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF033TZD, ENCFF137DWP, ENCFF807MUK 2580706789 ENCODE Processing Pipeline 51e9c1adc7202e6097699440744bd042 https://www.encodeproject.org/files/ENCFF208HMF/@@download/ENCFF208HMF.bam hg19 released low read depth ENCFF707DVP bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEE, ENCFF807MUK 681503456 ENCODE Processing Pipeline 282af5c3477638886bacfcc0166486ae https://www.encodeproject.org/files/ENCFF707DVP/@@download/ENCFF707DVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF729TUK bam alignments ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002EEI, ENCFF807MUK 769830242 ENCODE Processing Pipeline 1380c0428e1571342261d1a1af5bf14a https://www.encodeproject.org/files/ENCFF729TUK/@@download/ENCFF729TUK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF992FMF bam alignments ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 76 ENCFF201HJY, ENCFF807MUK 1879711232 ENCODE Processing Pipeline 57c2cf3139e6e8c39230b8cc750fbd14 https://www.encodeproject.org/files/ENCFF992FMF/@@download/ENCFF992FMF.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF174JQR bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF605MPT, ENCFF807MUK 409127334 ENCODE Processing Pipeline ba896bbea206066fcc0a5ff9161aa631 https://www.encodeproject.org/files/ENCFF174JQR/@@download/ENCFF174JQR.bam hg19 released low read length, low read depth missing control alignments ENCFF455VOE bam alignments ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF233QNF, ENCFF807MUK 405743468 ENCODE Processing Pipeline 09379e98854321321805ac69b47f4734 https://www.encodeproject.org/files/ENCFF455VOE/@@download/ENCFF455VOE.bam hg19 released low read length, low read depth missing control alignments ENCFF883INN bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 101 ENCFF513LZV, ENCFF755CGW, ENCFF807MUK 5980597572 ENCODE Processing Pipeline 673cdc09711fc0b4a7e89f91de32d03e https://www.encodeproject.org/files/ENCFF883INN/@@download/ENCFF883INN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF937IZT bam alignments ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 101 ENCFF720SPJ, ENCFF726QBO, ENCFF807MUK 5273607966 ENCODE Processing Pipeline 602fdde81eeaf4a65852fcd0800c1e65 https://www.encodeproject.org/files/ENCFF937IZT/@@download/ENCFF937IZT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF489VWP bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF681LCG, ENCFF807MUK, ENCFF871JTS 5065740515 ENCODE Processing Pipeline 72e3a1b1146fd2821169f70c7367aa30 https://www.encodeproject.org/files/ENCFF489VWP/@@download/ENCFF489VWP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF075MEV bam alignments ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF168WHE, ENCFF546URX, ENCFF807MUK 5589155723 ENCODE Processing Pipeline 518d0d8967980a59065fb9f20279e4c5 https://www.encodeproject.org/files/ENCFF075MEV/@@download/ENCFF075MEV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF654YMV bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF807MUK, ENCFF975GAK 473393847 ENCODE Processing Pipeline c8730e0e828099d92eac748388954279 https://www.encodeproject.org/files/ENCFF654YMV/@@download/ENCFF654YMV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF369VLT bam alignments ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF466DOW, ENCFF807MUK 600731496 ENCODE Processing Pipeline 5322988bac926ea7bbe1f01dd0883220 https://www.encodeproject.org/files/ENCFF369VLT/@@download/ENCFF369VLT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155XUI bam alignments ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF182BFU, ENCFF807MUK, ENCFF967GHE 3544028161 ENCODE Processing Pipeline 159b16e15cc0bbcee66d86cfa40065d2 https://www.encodeproject.org/files/ENCFF155XUI/@@download/ENCFF155XUI.bam hg19 released antibody characterized with exemption ENCFF064TXC bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF647OXS, ENCFF781NWB, ENCFF807MUK 3003869900 ENCODE Processing Pipeline 9fedb6f9358907f942aea0fc8490c1bf https://www.encodeproject.org/files/ENCFF064TXC/@@download/ENCFF064TXC.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF262FGR bam alignments ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF064VRM, ENCFF108LQS, ENCFF807MUK 3796975811 ENCODE Processing Pipeline 46f7b7102b79b9442e8eacbad993759d https://www.encodeproject.org/files/ENCFF262FGR/@@download/ENCFF262FGR.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF012OUS bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 76 ENCFF280KFA, ENCFF679UZB, ENCFF807MUK 3196478364 ENCODE Processing Pipeline 0a645d44a4da500b221bdb46d1823c48 https://www.encodeproject.org/files/ENCFF012OUS/@@download/ENCFF012OUS.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF121HVG bam alignments ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 76 ENCFF438KUW, ENCFF580FWH, ENCFF807MUK 2781305684 ENCODE Processing Pipeline 18b53984a41ee14c0f0c090c1d405788 https://www.encodeproject.org/files/ENCFF121HVG/@@download/ENCFF121HVG.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF998RRV bam alignments ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVH, ENCFF807MUK 664927102 ENCODE Processing Pipeline ff5e5d859c9611b2ddbc3088dca7f74a https://www.encodeproject.org/files/ENCFF998RRV/@@download/ENCFF998RRV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF833TQH bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 100 ENCFF067QCH, ENCFF474NLU, ENCFF807MUK 4693736246 ENCODE Processing Pipeline 25fc298edbb7a4e7dbf349738d1742f2 https://www.encodeproject.org/files/ENCFF833TQH/@@download/ENCFF833TQH.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF807RZI bam alignments ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 100 ENCFF242LHV, ENCFF439QJV, ENCFF807MUK 6093603032 ENCODE Processing Pipeline 5a70aa15da576a42fdbb2b3c3d982188 https://www.encodeproject.org/files/ENCFF807RZI/@@download/ENCFF807RZI.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF000XDH bam alignments ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDN 452038066 Peggy Farnham, USC a907681742a86f57cc8552d770cfa4f4 https://www.encodeproject.org/files/ENCFF000XDH/@@download/ENCFF000XDH.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDI bam alignments ENCSR000EVK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F6-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDX 732485594 Peggy Farnham, USC a119d62e67d72c6d3a22e36a70f54862 https://www.encodeproject.org/files/ENCFF000XDI/@@download/ENCFF000XDI.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF559SOB bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 100 ENCFF262QVS, ENCFF743IYA, ENCFF807MUK 7437321992 ENCODE Processing Pipeline 2feb6171b4d3249c4da94c8ac10a0340 https://www.encodeproject.org/files/ENCFF559SOB/@@download/ENCFF559SOB.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF011USL bam alignments ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 100 ENCFF066XRO, ENCFF807MUK, ENCFF860SCI 7010387342 ENCODE Processing Pipeline b0a00bd8525be4bb77e133eadee800e8 https://www.encodeproject.org/files/ENCFF011USL/@@download/ENCFF011USL.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF269TSX bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 3 101 ENCFF147AFV, ENCFF807MUK, ENCFF809LBJ 3277796505 ENCODE Processing Pipeline 45db1e2977f04f49d9da1383ab6f00aa https://www.encodeproject.org/files/ENCFF269TSX/@@download/ENCFF269TSX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF662JMK bam alignments ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 100 ENCFF124VKG, ENCFF287GOE, ENCFF807MUK 3287250564 ENCODE Processing Pipeline f25893f9733e70c041f0f9d867c71064 https://www.encodeproject.org/files/ENCFF662JMK/@@download/ENCFF662JMK.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF400XIQ bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF921ZXR 1091498564 ENCODE Processing Pipeline 9acb7085fba767e97578990129c68970 https://www.encodeproject.org/files/ENCFF400XIQ/@@download/ENCFF400XIQ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF039BUJ bam alignments ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 50 ENCFF570BZB, ENCFF807MUK 1909161854 ENCODE Processing Pipeline 5e890c143f9116edabdd878ad49d0cde https://www.encodeproject.org/files/ENCFF039BUJ/@@download/ENCFF039BUJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF861YTF bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF297TMP, ENCFF673KNX, ENCFF807MUK 3546358726 ENCODE Processing Pipeline a2390fd72ec30b593e33916e440fb46b https://www.encodeproject.org/files/ENCFF861YTF/@@download/ENCFF861YTF.bam hg19 released ENCFF295CQL bam alignments ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF520UHF, ENCFF687MII, ENCFF807MUK 5017115670 ENCODE Processing Pipeline 98135f564a77b04c052c6fd81e783702 https://www.encodeproject.org/files/ENCFF295CQL/@@download/ENCFF295CQL.bam hg19 released ENCFF089CVW bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 101 ENCFF577UHT, ENCFF793GUD, ENCFF807MUK 4410898561 ENCODE Processing Pipeline a51351b359f7e57f9ce9ae0d56386be2 https://www.encodeproject.org/files/ENCFF089CVW/@@download/ENCFF089CVW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF333HHV bam alignments ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 101 ENCFF213ENW, ENCFF683HBT, ENCFF807MUK 5074679499 ENCODE Processing Pipeline ad504b8b70adc8c0f28383f704ae1f2c https://www.encodeproject.org/files/ENCFF333HHV/@@download/ENCFF333HHV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF056GKK bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF256RPR, ENCFF807MUK, ENCFF870RNA 5091285882 ENCODE Processing Pipeline cbb855c5a0145ad3d3abaaedd57f6ac1 https://www.encodeproject.org/files/ENCFF056GKK/@@download/ENCFF056GKK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF052TDK bam alignments ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF238UVA, ENCFF483BRW, ENCFF807MUK 4146676086 ENCODE Processing Pipeline 52aaa89b8cba086315e8c7a36e667275 https://www.encodeproject.org/files/ENCFF052TDK/@@download/ENCFF052TDK.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF570TFE bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 100 ENCFF392GKJ, ENCFF699NLS, ENCFF807MUK 4734044300 ENCODE Processing Pipeline 405b3f9bad05d0de8c3ee127fa26db34 https://www.encodeproject.org/files/ENCFF570TFE/@@download/ENCFF570TFE.bam hg19 released antibody characterized with exemption ENCFF612QPQ bam alignments ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 100 ENCFF770SQJ, ENCFF807MUK, ENCFF984URP 5947196426 ENCODE Processing Pipeline 8346fc4ec6cc4b1737d8ba302177a4c6 https://www.encodeproject.org/files/ENCFF612QPQ/@@download/ENCFF612QPQ.bam hg19 released antibody characterized with exemption ENCFF635IBY bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PQE, ENCFF807MUK 541087843 ENCODE Processing Pipeline 78f8d33313ae4b6816b3bf7222b08a0f https://www.encodeproject.org/files/ENCFF635IBY/@@download/ENCFF635IBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF417XUU bam alignments ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PQJ, ENCFF807MUK 1283408178 ENCODE Processing Pipeline 96ac535e7110c3bb9b9b1e3dd8b6986c https://www.encodeproject.org/files/ENCFF417XUU/@@download/ENCFF417XUU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF081JMB bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF356DMG, ENCFF807MUK 477463928 ENCODE Processing Pipeline 1b1271acf74ba208c467b108d423046f https://www.encodeproject.org/files/ENCFF081JMB/@@download/ENCFF081JMB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF766UVZ bam alignments ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF450ZOR, ENCFF807MUK 414407290 ENCODE Processing Pipeline 7baa26e0f37a561a02cb547b3b46808f https://www.encodeproject.org/files/ENCFF766UVZ/@@download/ENCFF766UVZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF427GLC bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF321VUE, ENCFF807MUK 412287405 ENCODE Processing Pipeline 883163a183b5f2ff0d6f029ca25a975f https://www.encodeproject.org/files/ENCFF427GLC/@@download/ENCFF427GLC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF995FJU bam alignments ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF292OSF, ENCFF807MUK 399504468 ENCODE Processing Pipeline 46fda4a53c96426fa8475c942130b7ea https://www.encodeproject.org/files/ENCFF995FJU/@@download/ENCFF995FJU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF749CGY bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OKD, ENCFF807MUK 652291534 ENCODE Processing Pipeline 66325c346328f860bf40382a705bc6f1 https://www.encodeproject.org/files/ENCFF749CGY/@@download/ENCFF749CGY.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF100AQB bam alignments ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OKG, ENCFF807MUK 887311453 ENCODE Processing Pipeline 6d7d89ffb6587ac4cc2b717d4ff67150 https://www.encodeproject.org/files/ENCFF100AQB/@@download/ENCFF100AQB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF940TNY bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 100 ENCFF090VRQ, ENCFF256ZUF, ENCFF807MUK 4287809086 ENCODE Processing Pipeline 083dc96d7281cb51c7bbe61b62a09d28 https://www.encodeproject.org/files/ENCFF940TNY/@@download/ENCFF940TNY.bam hg19 released ENCFF758IAE bam alignments ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 100 ENCFF203LDU, ENCFF238IYZ, ENCFF807MUK 5179970495 ENCODE Processing Pipeline ec006c07f19a7286528c56eb7d3d210c https://www.encodeproject.org/files/ENCFF758IAE/@@download/ENCFF758IAE.bam hg19 released ENCFF400GIP bam alignments ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF435KUB, ENCFF807MUK, ENCFF999VOH 2666299787 ENCODE Processing Pipeline b2afab611ff09bcf2e0b5c7df0a04985 https://www.encodeproject.org/files/ENCFF400GIP/@@download/ENCFF400GIP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF243VKO bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 3 100 ENCFF324OEM, ENCFF807MUK, ENCFF812LUV 3714472856 ENCODE Processing Pipeline 3a0ca5302007a4bf91f53075ec774020 https://www.encodeproject.org/files/ENCFF243VKO/@@download/ENCFF243VKO.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF562COY bam alignments ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 100 ENCFF640JQI, ENCFF765ZNI, ENCFF807MUK 4307263026 ENCODE Processing Pipeline dc48cd119b6e6cb168a0cb2c24c29302 https://www.encodeproject.org/files/ENCFF562COY/@@download/ENCFF562COY.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF874VLY bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIX, ENCFF807MUK 850508700 ENCODE Processing Pipeline 47b75eca26ceec6851596e66983c85d3 https://www.encodeproject.org/files/ENCFF874VLY/@@download/ENCFF874VLY.bam hg19 released low read length biological replicates with identical biosample ENCFF963XWS bam alignments ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIY, ENCFF807MUK 832326223 ENCODE Processing Pipeline c4d6cfef39eaacd4e20e595d401cb911 https://www.encodeproject.org/files/ENCFF963XWS/@@download/ENCFF963XWS.bam hg19 released low read length biological replicates with identical biosample ENCFF740PUZ bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF892EKB 1842143132 ENCODE Processing Pipeline 3a3d05726102ce212242ca2141fa27a0 https://www.encodeproject.org/files/ENCFF740PUZ/@@download/ENCFF740PUZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF223CHE bam alignments ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 76 ENCFF336VLV, ENCFF807MUK 1519151208 ENCODE Processing Pipeline 94a1f77e21a0c3df5e1e01b1d62a72f9 https://www.encodeproject.org/files/ENCFF223CHE/@@download/ENCFF223CHE.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF438KPT bam alignments ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 100 ENCFF621DYS, ENCFF800IPM, ENCFF807MUK 2363307337 ENCODE Processing Pipeline c354ec07f88cfcc3f26d44bc3f5f2a73 https://www.encodeproject.org/files/ENCFF438KPT/@@download/ENCFF438KPT.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF904EON bam alignments ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF570FCV, ENCFF713HTL, ENCFF807MUK 3303522906 ENCODE Processing Pipeline af29bff1fb8f6a9a9877be8ac79bba6d https://www.encodeproject.org/files/ENCFF904EON/@@download/ENCFF904EON.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF992GXV bam alignments ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF356QEU, ENCFF759FBS, ENCFF807MUK 4006655353 ENCODE Processing Pipeline 8e847e80e7238f5cbcda401ed601f303 https://www.encodeproject.org/files/ENCFF992GXV/@@download/ENCFF992GXV.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF424FQK bam alignments ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF278XHE, ENCFF807MUK, ENCFF869NYZ 3499038051 ENCODE Processing Pipeline 8cf7f0d150f546c7e1b7601259422913 https://www.encodeproject.org/files/ENCFF424FQK/@@download/ENCFF424FQK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF422HPM bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF115AGC, ENCFF807MUK 796949069 ENCODE Processing Pipeline 14c776b194dc9faa1c6bf0c64451c4f7 https://www.encodeproject.org/files/ENCFF422HPM/@@download/ENCFF422HPM.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF392VDD bam alignments ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF991ROT 400863879 ENCODE Processing Pipeline fdaaedca0176909b0ecefd03c3873946 https://www.encodeproject.org/files/ENCFF392VDD/@@download/ENCFF392VDD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF529FSM bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFY, ENCFF807MUK 272968981 ENCODE Processing Pipeline 374418505d032b4f967593887dff6739 https://www.encodeproject.org/files/ENCFF529FSM/@@download/ENCFF529FSM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF498PCU bam alignments ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PGB, ENCFF807MUK 678419576 ENCODE Processing Pipeline 0907a67103816d668a17dc757866f5c7 https://www.encodeproject.org/files/ENCFF498PCU/@@download/ENCFF498PCU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF944SJF bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSA, ENCFF807MUK 464404189 ENCODE Processing Pipeline 04ee2be1929f9b781024dd5ae569f28e https://www.encodeproject.org/files/ENCFF944SJF/@@download/ENCFF944SJF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF746RLX bam alignments ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSG, ENCFF807MUK 1301082160 ENCODE Processing Pipeline c0d4bb6cdc5e945ea32ea3f58e6c81a4 https://www.encodeproject.org/files/ENCFF746RLX/@@download/ENCFF746RLX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF152YRC bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF164NLU, ENCFF762OUK, ENCFF807MUK 5526568143 ENCODE Processing Pipeline 5ee48ad0eb31cb536b68a548a617f9bc https://www.encodeproject.org/files/ENCFF152YRC/@@download/ENCFF152YRC.bam hg19 released ENCFF279CMU bam alignments ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF076CUB, ENCFF160GSI, ENCFF807MUK 5486539485 ENCODE Processing Pipeline 621c5869629cffe9ff7cabb12adef119 https://www.encodeproject.org/files/ENCFF279CMU/@@download/ENCFF279CMU.bam hg19 released ENCFF205RMR bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VXD, ENCFF807MUK 493320684 ENCODE Processing Pipeline 445adae8bfe5c17c9dac401c0d8b0a0e https://www.encodeproject.org/files/ENCFF205RMR/@@download/ENCFF205RMR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF083VSQ bam alignments ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VXI, ENCFF807MUK 669689385 ENCODE Processing Pipeline b583afe624ddb0aab2f099ea62fae064 https://www.encodeproject.org/files/ENCFF083VSQ/@@download/ENCFF083VSQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF844VCV bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF114TJN, ENCFF628HBL, ENCFF807MUK 2700404609 ENCODE Processing Pipeline 34f0fef1fa5961d1e8a2d96f85b6d7ff https://www.encodeproject.org/files/ENCFF844VCV/@@download/ENCFF844VCV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF064POH bam alignments ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF798AFN, ENCFF807MUK, ENCFF940DHI 3409160303 ENCODE Processing Pipeline 3fdf3a6216b7719dbb18e33cc8269cba https://www.encodeproject.org/files/ENCFF064POH/@@download/ENCFF064POH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF410WSQ bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 100 ENCFF122AVV, ENCFF807MUK, ENCFF956NJR 3961577359 ENCODE Processing Pipeline 06d65bebffdc9ad10384322a01b7446b https://www.encodeproject.org/files/ENCFF410WSQ/@@download/ENCFF410WSQ.bam hg19 released mild to moderate bottlenecking ENCFF871PMM bam alignments ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 100 ENCFF483YZA, ENCFF570GLE, ENCFF807MUK 4314774383 ENCODE Processing Pipeline 50ebc7770f813f20767c95720b6b6614 https://www.encodeproject.org/files/ENCFF871PMM/@@download/ENCFF871PMM.bam hg19 released mild to moderate bottlenecking ENCFF317UJS bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 100 ENCFF045QIG, ENCFF807MUK, ENCFF871VWH 3825961591 ENCODE Processing Pipeline 604f41d0c5388385fed8506147f690d8 https://www.encodeproject.org/files/ENCFF317UJS/@@download/ENCFF317UJS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF798EEI bam alignments ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 100 ENCFF025AGM, ENCFF751XCN, ENCFF807MUK 5431747534 ENCODE Processing Pipeline 8239008e740bc503debbd64791caa238 https://www.encodeproject.org/files/ENCFF798EEI/@@download/ENCFF798EEI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF255PIM bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPS, ENCFF807MUK 657938634 ENCODE Processing Pipeline dd979bff0c28be79c1c75eac4c244284 https://www.encodeproject.org/files/ENCFF255PIM/@@download/ENCFF255PIM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF694EPR bam alignments ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPZ, ENCFF807MUK 736479403 ENCODE Processing Pipeline 0382220721ed84cc609fe8a2adbc0731 https://www.encodeproject.org/files/ENCFF694EPR/@@download/ENCFF694EPR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF224XOE bam alignments ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF438UOR, ENCFF478FFG, ENCFF807MUK 2700946960 ENCODE Processing Pipeline 3b723b43f68d05d0bdd1ab5f20d24f86 https://www.encodeproject.org/files/ENCFF224XOE/@@download/ENCFF224XOE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF745ITX bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF327EZT, ENCFF534JQE, ENCFF807MUK 4288264985 ENCODE Processing Pipeline e3caa800046da0c390dc492e11fcba4a https://www.encodeproject.org/files/ENCFF745ITX/@@download/ENCFF745ITX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF575OIR bam alignments ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF585TRE, ENCFF735ESZ, ENCFF807MUK 4627741811 ENCODE Processing Pipeline bd43df6bf2d4216ac6fa5f4c18548dda https://www.encodeproject.org/files/ENCFF575OIR/@@download/ENCFF575OIR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF000XNC bam alignments ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOE 353885516 Michael Snyder, Stanford 2a08f8108a463554e1d4a8bd89dc5963 https://www.encodeproject.org/files/ENCFF000XNC/@@download/ENCFF000XNC.bam hg19 released low read length biological replicates with identical biosample ENCFF000XND bam alignments ENCSR000ECW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XOI 389595340 Michael Snyder, Stanford 1ec0748bb0295d16abeaa44a1798d90f https://www.encodeproject.org/files/ENCFF000XND/@@download/ENCFF000XND.bam hg19 released low read length biological replicates with identical biosample ENCFF594WOK bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF807MUK, ENCFF996EOY 302639949 ENCODE Processing Pipeline e6890d78095efb500910db03bcda928f https://www.encodeproject.org/files/ENCFF594WOK/@@download/ENCFF594WOK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF957SXO bam alignments ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF320DMB, ENCFF807MUK 383945707 ENCODE Processing Pipeline 436735e18271c1f6bc2b928f9a11121d https://www.encodeproject.org/files/ENCFF957SXO/@@download/ENCFF957SXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF098EOS bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF438OBK, ENCFF807MUK 438308238 ENCODE Processing Pipeline 5fea5c8f5ed8ec485dfd2b6f41cf1d2c https://www.encodeproject.org/files/ENCFF098EOS/@@download/ENCFF098EOS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF140KEX bam alignments ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF118JPH, ENCFF807MUK, ENCFF926CUN 404890070 ENCODE Processing Pipeline 7de55b79a6a26cc50e9310512bad11fe https://www.encodeproject.org/files/ENCFF140KEX/@@download/ENCFF140KEX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF067NIX bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF002DPG, ENCFF002EFW, ENCFF807MUK 5417281731 ENCODE Processing Pipeline 3d7eda0874607c086e4b7aabdc5dcf27 https://www.encodeproject.org/files/ENCFF067NIX/@@download/ENCFF067NIX.bam hg19 released mild to moderate bottlenecking ENCFF642HGZ bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 3 101 ENCFF807MUK, ENCFF809IJU, ENCFF894NUI 5551099504 ENCODE Processing Pipeline 6cd78fc49e0e979a38db8f285a602247 https://www.encodeproject.org/files/ENCFF642HGZ/@@download/ENCFF642HGZ.bam hg19 released mild to moderate bottlenecking ENCFF256EDM bam alignments ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 100 ENCFF002DPG, ENCFF002EFW, ENCFF807MUK 5417281757 ENCODE Processing Pipeline 149ac0e9c434cbfe71da540a1d07cc6f https://www.encodeproject.org/files/ENCFF256EDM/@@download/ENCFF256EDM.bam hg19 released mild to moderate bottlenecking ENCFF528MPO bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF419KZP, ENCFF481UQC, ENCFF807MUK 3971860786 ENCODE Processing Pipeline c38440a7fd5913e5d252ebafa144509c https://www.encodeproject.org/files/ENCFF528MPO/@@download/ENCFF528MPO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF286WTH bam alignments ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF811KIP, ENCFF815ZVG 4132124749 ENCODE Processing Pipeline ae0a5b9a5a05d7c7700887ff7678716d https://www.encodeproject.org/files/ENCFF286WTH/@@download/ENCFF286WTH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF541CNR bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF781UOJ, ENCFF807MUK, ENCFF858OMD 5163097789 ENCODE Processing Pipeline f610229cc466c9b8167d8b5afa21f821 https://www.encodeproject.org/files/ENCFF541CNR/@@download/ENCFF541CNR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF579WVJ bam alignments ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF539QEY, ENCFF709VMO, ENCFF807MUK 6763195815 ENCODE Processing Pipeline f8df62a137d8ae57e4dc7fedb6c7984b https://www.encodeproject.org/files/ENCFF579WVJ/@@download/ENCFF579WVJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF241OMA bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF359XBS, ENCFF807MUK 746538381 ENCODE Processing Pipeline eec6103b478a3f1dafa1c6b6db205123 https://www.encodeproject.org/files/ENCFF241OMA/@@download/ENCFF241OMA.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF157JVZ bam alignments ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF088HIS, ENCFF807MUK 855049897 ENCODE Processing Pipeline c21875e6e673a9cfd15a37dbe11b8b06 https://www.encodeproject.org/files/ENCFF157JVZ/@@download/ENCFF157JVZ.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF093ATD bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF394TEH, ENCFF807MUK, ENCFF914JSK 4292849395 ENCODE Processing Pipeline ef72fbb0565fbeeb524a41bb1df31def https://www.encodeproject.org/files/ENCFF093ATD/@@download/ENCFF093ATD.bam hg19 released mild to moderate bottlenecking ENCFF869BJB bam alignments ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF172ORI, ENCFF258XJK, ENCFF807MUK 5433620911 ENCODE Processing Pipeline 943e016f126c602ae61af91418eee130 https://www.encodeproject.org/files/ENCFF869BJB/@@download/ENCFF869BJB.bam hg19 released mild to moderate bottlenecking ENCFF445HJT bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF016JYN, ENCFF807MUK, ENCFF904ZYJ 4902283071 ENCODE Processing Pipeline c35489a16fb1b12f6dd0e0ab0b3c5453 https://www.encodeproject.org/files/ENCFF445HJT/@@download/ENCFF445HJT.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF574BHM bam alignments ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF152PSJ, ENCFF807MUK, ENCFF956EJH 3662946721 ENCODE Processing Pipeline 087c8f4fe9f9f3c6963027605389e4ad https://www.encodeproject.org/files/ENCFF574BHM/@@download/ENCFF574BHM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF787PBQ bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF611LYK, ENCFF774LQB, ENCFF807MUK 2922772549 ENCODE Processing Pipeline 7111a72087a9b34f3d23c4c6952aea9f https://www.encodeproject.org/files/ENCFF787PBQ/@@download/ENCFF787PBQ.bam hg19 released low read depth ENCFF287PVI bam alignments ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF482CBA, ENCFF580EKN, ENCFF807MUK 3082523942 ENCODE Processing Pipeline 38527d4d21c4569a77d748309685161a https://www.encodeproject.org/files/ENCFF287PVI/@@download/ENCFF287PVI.bam hg19 released low read depth ENCFF192PYQ bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 3 36 ENCFF002EWD, ENCFF807MUK 522078556 ENCODE Processing Pipeline f7d4922838165066e3fd3ff1a61c4303 https://www.encodeproject.org/files/ENCFF192PYQ/@@download/ENCFF192PYQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF844JHW bam alignments ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EWC, ENCFF807MUK 776509522 ENCODE Processing Pipeline 73d621af138ddd1e40fdc622fce8344f https://www.encodeproject.org/files/ENCFF844JHW/@@download/ENCFF844JHW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF864HWM bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 100 ENCFF108LDP, ENCFF340SRU, ENCFF807MUK 7738823060 ENCODE Processing Pipeline 70cd5b1c099e7dd455444be1d6ff9ddc https://www.encodeproject.org/files/ENCFF864HWM/@@download/ENCFF864HWM.bam hg19 released antibody characterized with exemption NTR biosample ENCFF577USD bam alignments ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 100 ENCFF292UBY, ENCFF664IIE, ENCFF807MUK 9639703690 ENCODE Processing Pipeline bd2c96dd7b6c0fe89d2124575d26b772 https://www.encodeproject.org/files/ENCFF577USD/@@download/ENCFF577USD.bam hg19 released antibody characterized with exemption NTR biosample ENCFF581FMD bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF809ESS 527374620 ENCODE Processing Pipeline 91a62fa8d3d71e660945535119051aea https://www.encodeproject.org/files/ENCFF581FMD/@@download/ENCFF581FMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF562BIX bam alignments ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF566HIZ, ENCFF807MUK 640091502 ENCODE Processing Pipeline d5e810338e9f7d6360ebc0ca084b926c https://www.encodeproject.org/files/ENCFF562BIX/@@download/ENCFF562BIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF054MPE bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 50 ENCFF699XDW, ENCFF807MUK 874608334 ENCODE Processing Pipeline 524edd686b0a85189637ee543f3c37a1 https://www.encodeproject.org/files/ENCFF054MPE/@@download/ENCFF054MPE.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF968PCC bam alignments ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 50 ENCFF470IAE, ENCFF807MUK 909534840 ENCODE Processing Pipeline 7a6ffc4b65485a82d1a68afa9a795535 https://www.encodeproject.org/files/ENCFF968PCC/@@download/ENCFF968PCC.bam hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF840CEN bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF807MUK, ENCFF830GPY, ENCFF912ESY 5425905632 ENCODE Processing Pipeline 9a94ecc4cd35aba2aff49074d0553aca https://www.encodeproject.org/files/ENCFF840CEN/@@download/ENCFF840CEN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF844SVF bam alignments ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF212ALP, ENCFF555XUI, ENCFF807MUK 6769863698 ENCODE Processing Pipeline 18cab7a4c3b2158ad1cd51ca2a95d54c https://www.encodeproject.org/files/ENCFF844SVF/@@download/ENCFF844SVF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF011CRJ bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 36 ENCFF582BLP, ENCFF807MUK 2415748471 ENCODE Processing Pipeline 41bd17f7663bcd50f72126df80137bc2 https://www.encodeproject.org/files/ENCFF011CRJ/@@download/ENCFF011CRJ.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF450BPA bam alignments ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 36 ENCFF344KYL, ENCFF674DQN, ENCFF807MUK, ENCFF908KEB 1517630603 ENCODE Processing Pipeline 4cf54206c1ce9e6a13fb3043b7beae57 https://www.encodeproject.org/files/ENCFF450BPA/@@download/ENCFF450BPA.bam hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF537VTS bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 36 ENCFF002EWM, ENCFF807MUK 641770979 ENCODE Processing Pipeline 9f8bacddad08c5b5f163351fda9cc829 https://www.encodeproject.org/files/ENCFF537VTS/@@download/ENCFF537VTS.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF698CGK bam alignments ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 36 ENCFF002EWV, ENCFF807MUK 857821994 ENCODE Processing Pipeline 8a247fbf795b14aa997f8923dc5cc368 https://www.encodeproject.org/files/ENCFF698CGK/@@download/ENCFF698CGK.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF954JCE bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF631JSV, ENCFF715KYL, ENCFF807MUK 6807177607 ENCODE Processing Pipeline 06f540cc77d093365e9bcd64308457d3 https://www.encodeproject.org/files/ENCFF954JCE/@@download/ENCFF954JCE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF799SDQ bam alignments ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF002OWA, ENCFF807MUK, ENCFF833BQT 6570595075 ENCODE Processing Pipeline 9c5e18689e8f49911b0f6a2d0f5d729a https://www.encodeproject.org/files/ENCFF799SDQ/@@download/ENCFF799SDQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF004XRU bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF571HFF, ENCFF807MUK, ENCFF961HCT 2824789415 ENCODE Processing Pipeline 4e0fa6edf1e346fb76eea9be385cb08d https://www.encodeproject.org/files/ENCFF004XRU/@@download/ENCFF004XRU.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF802VUL bam alignments ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF332WPE, ENCFF807MUK, ENCFF818OPZ 4150861572 ENCODE Processing Pipeline 0ef73df9f5a38e3322da6772e3f07df6 https://www.encodeproject.org/files/ENCFF802VUL/@@download/ENCFF802VUL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF159KKU bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF460GBK, ENCFF653BTH, ENCFF807MUK 3917299676 ENCODE Processing Pipeline 3ca6098161ae128622aad0f386538990 https://www.encodeproject.org/files/ENCFF159KKU/@@download/ENCFF159KKU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF440OEL bam alignments ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF688XKX, ENCFF742FEB, ENCFF807MUK 4782786434 ENCODE Processing Pipeline 3d09de8c958e963a3f8082b8e1bb658f https://www.encodeproject.org/files/ENCFF440OEL/@@download/ENCFF440OEL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF856TQX bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF807MUK, ENCFF876PMY, ENCFF912QAD 4007336017 ENCODE Processing Pipeline 4d1c7ba80fa6fce383e85b81facf3cdd https://www.encodeproject.org/files/ENCFF856TQX/@@download/ENCFF856TQX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF216HOT bam alignments ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF352PQY, ENCFF586BYR, ENCFF807MUK 4583893523 ENCODE Processing Pipeline 01d76e9f444b5816597fc19b918f6363 https://www.encodeproject.org/files/ENCFF216HOT/@@download/ENCFF216HOT.bam hg19 released missing genetic modification characterization missing control alignments ENCFF903MUJ bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 100 ENCFF383AYS, ENCFF710PPD, ENCFF807MUK 3569626603 ENCODE Processing Pipeline e272bcda146924e2b1688e89bfa6928e https://www.encodeproject.org/files/ENCFF903MUJ/@@download/ENCFF903MUJ.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF308WNU bam alignments ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 100 ENCFF238TRM, ENCFF447WZH, ENCFF807MUK 3890881191 ENCODE Processing Pipeline 55bd3b4deb0e1a75a3735a5d828f86d6 https://www.encodeproject.org/files/ENCFF308WNU/@@download/ENCFF308WNU.bam hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF509PRR bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF079PYC, ENCFF807MUK, ENCFF909OVD 4416626145 ENCODE Processing Pipeline 8fcd8f57e65018389ec7781c3ba5352f https://www.encodeproject.org/files/ENCFF509PRR/@@download/ENCFF509PRR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF869CLO bam alignments ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF011GGX, ENCFF183DJQ, ENCFF807MUK 3973663115 ENCODE Processing Pipeline fa6a7a7b680778a5f3db85004f1a3dd7 https://www.encodeproject.org/files/ENCFF869CLO/@@download/ENCFF869CLO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF142DHE bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 36 ENCFF002EWL, ENCFF807MUK 684222439 ENCODE Processing Pipeline 827004a5833f37a501dddab4137ad654 https://www.encodeproject.org/files/ENCFF142DHE/@@download/ENCFF142DHE.bam hg19 released low read length, low read depth ENCFF169POV bam alignments ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 36 ENCFF002EWQ, ENCFF807MUK 637993501 ENCODE Processing Pipeline c58cddb267ce40bcf76573d0e831a443 https://www.encodeproject.org/files/ENCFF169POV/@@download/ENCFF169POV.bam hg19 released low read length, low read depth ENCFF982YZF bam alignments ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF385KCF, ENCFF807MUK, ENCFF897CNI 2171122455 ENCODE Processing Pipeline aab67379275e700556ec1226c4cee92d https://www.encodeproject.org/files/ENCFF982YZF/@@download/ENCFF982YZF.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF214PDY bam alignments ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF095ZXW, ENCFF218LAW, ENCFF807MUK 4016400460 ENCODE Processing Pipeline 85d30f17aaa9e63b4463bf1ad782f3b8 https://www.encodeproject.org/files/ENCFF214PDY/@@download/ENCFF214PDY.bam hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF033PRP bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF489DPL, ENCFF807MUK, ENCFF999EFL 4734403641 ENCODE Processing Pipeline 6fd95bebbabf4a1020edcf8cd37a61f0 https://www.encodeproject.org/files/ENCFF033PRP/@@download/ENCFF033PRP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF877LYM bam alignments ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF523ULM, ENCFF552ETP, ENCFF807MUK 5237793483 ENCODE Processing Pipeline 1898399971e3e1a35d441953721dc9a9 https://www.encodeproject.org/files/ENCFF877LYM/@@download/ENCFF877LYM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF804JJB bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF602URB, ENCFF618GBB, ENCFF807MUK 4923227133 ENCODE Processing Pipeline fb2f9c5a2a48cb429ca927834417708a https://www.encodeproject.org/files/ENCFF804JJB/@@download/ENCFF804JJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF114YKN bam alignments ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF306YKT, ENCFF802KGS, ENCFF807MUK 3946393213 ENCODE Processing Pipeline c7e2a0f67eba1d22b32a9d76b3b35c6e https://www.encodeproject.org/files/ENCFF114YKN/@@download/ENCFF114YKN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF373PZM bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 76 ENCFF042JKC, ENCFF224PDC, ENCFF807MUK 5113817530 ENCODE Processing Pipeline ba5c3283eed44c51c58f636f56f03c6a https://www.encodeproject.org/files/ENCFF373PZM/@@download/ENCFF373PZM.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF216LIY bam alignments ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 76 ENCFF257CEN, ENCFF807MUK, ENCFF838ZUT 3266749350 ENCODE Processing Pipeline c98b3013c6c0f615b3fc98165e1128b3 https://www.encodeproject.org/files/ENCFF216LIY/@@download/ENCFF216LIY.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF558XCY bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023BWP, ENCFF041PSD, ENCFF807MUK 3489702951 ENCODE Processing Pipeline 21a92b027233fdb287e9b718886ea073 https://www.encodeproject.org/files/ENCFF558XCY/@@download/ENCFF558XCY.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF675CIQ bam alignments ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2018-01-26 ENCODE 4 100 ENCFF004DQS, ENCFF806CEC, ENCFF807MUK 3276801956 ENCODE Processing Pipeline 3bb76470b8fdf4455df912c28186a389 https://www.encodeproject.org/files/ENCFF675CIQ/@@download/ENCFF675CIQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF502AYE bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 100 ENCFF571BGG, ENCFF686DFA, ENCFF807MUK 5245554267 ENCODE Processing Pipeline 2bed5da5cc6adf7de9c51958dcd5b44d https://www.encodeproject.org/files/ENCFF502AYE/@@download/ENCFF502AYE.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF497YCG bam alignments ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 3 101 ENCFF807ATT, ENCFF807MUK, ENCFF938LON 3932055552 ENCODE Processing Pipeline f0c5abe3f8aaec232c8d57f5e68f39a0 https://www.encodeproject.org/files/ENCFF497YCG/@@download/ENCFF497YCG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF791XQO bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF070OBA, ENCFF807MUK, ENCFF932JXG 3661782619 ENCODE Processing Pipeline 5bf642119f8cfc455453e9b17e874782 https://www.encodeproject.org/files/ENCFF791XQO/@@download/ENCFF791XQO.bam hg19 released low read depth, antibody characterized with exemption ENCFF357FKU bam alignments ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF132GWN, ENCFF456MJL, ENCFF807MUK 3358306386 ENCODE Processing Pipeline 42af36af156e1540cfb597156e1a2f47 https://www.encodeproject.org/files/ENCFF357FKU/@@download/ENCFF357FKU.bam hg19 released low read depth, antibody characterized with exemption ENCFF554KBV bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 100 ENCFF678SZB, ENCFF807MUK, ENCFF864KXI 4204910819 ENCODE Processing Pipeline 7adfcc4afd59c694a1038382bc1598bf https://www.encodeproject.org/files/ENCFF554KBV/@@download/ENCFF554KBV.bam hg19 released borderline replicate concordance, low read depth ENCFF324TIY bam alignments ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 100 ENCFF253FCU, ENCFF379LAP, ENCFF807MUK 3639622578 ENCODE Processing Pipeline e8654f2fe2fd3c47b94f4ecbe8eb1f86 https://www.encodeproject.org/files/ENCFF324TIY/@@download/ENCFF324TIY.bam hg19 released borderline replicate concordance, low read depth ENCFF144XUD bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF531POO, ENCFF807MUK, ENCFF992OBB 507768465 ENCODE Processing Pipeline 10b9e3ae964a69fb56dbbc0d449ff659 https://www.encodeproject.org/files/ENCFF144XUD/@@download/ENCFF144XUD.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF885UDL bam alignments ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF586ZST, ENCFF744SCS, ENCFF807MUK 535973885 ENCODE Processing Pipeline b2829b31ca67c4d3a7de59e828319ce6 https://www.encodeproject.org/files/ENCFF885UDL/@@download/ENCFF885UDL.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272YQK bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 40 ENCFF746USU, ENCFF807MUK 933333977 ENCODE Processing Pipeline 0936655c8185ae01de61eb777a10baa9 https://www.encodeproject.org/files/ENCFF272YQK/@@download/ENCFF272YQK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF012EGY bam alignments ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 40 ENCFF072TOT, ENCFF807MUK 695110525 ENCODE Processing Pipeline 3ba0fa0c864a9d96c41070ed03b73142 https://www.encodeproject.org/files/ENCFF012EGY/@@download/ENCFF012EGY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF922YTF bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF544CJY, ENCFF807MUK, ENCFF810COJ 6552040595 ENCODE Processing Pipeline db23d6fa5b6bf7e52af77b06ffa88a83 https://www.encodeproject.org/files/ENCFF922YTF/@@download/ENCFF922YTF.bam hg19 released borderline replicate concordance ENCFF993THI bam alignments ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF382VVC, ENCFF383NLP, ENCFF807MUK 7389355184 ENCODE Processing Pipeline 303fc14ffabcb3d3d8305c714603160f https://www.encodeproject.org/files/ENCFF993THI/@@download/ENCFF993THI.bam hg19 released borderline replicate concordance ENCFF594IKC bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF807MUK, ENCFF999VUF 501564193 ENCODE Processing Pipeline 65a1c84412f2255d5e03eeedada58074 https://www.encodeproject.org/files/ENCFF594IKC/@@download/ENCFF594IKC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF870AMF bam alignments ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF753OYD, ENCFF807MUK 551254873 ENCODE Processing Pipeline 405cf588abfaa5efa1b5dc776d808bae https://www.encodeproject.org/files/ENCFF870AMF/@@download/ENCFF870AMF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF339ZHE bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF017YSG, ENCFF691KWL, ENCFF807MUK 4451042718 ENCODE Processing Pipeline d05ee88bd39e21c07c8ef8410c8ea018 https://www.encodeproject.org/files/ENCFF339ZHE/@@download/ENCFF339ZHE.bam hg19 released mild to moderate bottlenecking ENCFF068ELI bam alignments ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF613WSV, ENCFF807MUK, ENCFF809EPG 5280813302 ENCODE Processing Pipeline df3790cac6f639e3bcbf88c4ca547fea https://www.encodeproject.org/files/ENCFF068ELI/@@download/ENCFF068ELI.bam hg19 released mild to moderate bottlenecking ENCFF355PVS bam alignments ENCSR153AGA ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF223FTQ, ENCFF346MYJ, ENCFF807MUK 3658163389 ENCODE Processing Pipeline cb6cffa0abb6e7728be6910fe3fa77eb https://www.encodeproject.org/files/ENCFF355PVS/@@download/ENCFF355PVS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity ENCFF688XDE bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDB, ENCFF807MUK 522494891 ENCODE Processing Pipeline 42f067dc855f6b99bda9cb57c48ae3e0 https://www.encodeproject.org/files/ENCFF688XDE/@@download/ENCFF688XDE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF370YOR bam alignments ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDC, ENCFF807MUK 783455395 ENCODE Processing Pipeline 4f469c02debe083f58593471e22d9853 https://www.encodeproject.org/files/ENCFF370YOR/@@download/ENCFF370YOR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF765AHP bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF390IPW, ENCFF645XVN, ENCFF807MUK 5137447333 ENCODE Processing Pipeline 0a53d0da34f88967fce6ed0eff06a66a https://www.encodeproject.org/files/ENCFF765AHP/@@download/ENCFF765AHP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF371EAK bam alignments ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF167QBT, ENCFF515XEA, ENCFF807MUK 5532522782 ENCODE Processing Pipeline bac455ddab50e19712808c7437f2f801 https://www.encodeproject.org/files/ENCFF371EAK/@@download/ENCFF371EAK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF061MPQ bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EME, ENCFF002EMH, ENCFF807MUK 6208290542 ENCODE Processing Pipeline b6d60e7bc33af6dc7b3f2f955b7dc65d https://www.encodeproject.org/files/ENCFF061MPQ/@@download/ENCFF061MPQ.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF425GKU bam alignments ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMI, ENCFF002EMK, ENCFF807MUK 6941929400 ENCODE Processing Pipeline 0f0ae01933dce6b4aab1f2661b561539 https://www.encodeproject.org/files/ENCFF425GKU/@@download/ENCFF425GKU.bam hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF679QQL bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF181KEE, ENCFF807MUK, ENCFF901AEL 5009877886 ENCODE Processing Pipeline c99b2b20988dbaa239279e36813ae3d6 https://www.encodeproject.org/files/ENCFF679QQL/@@download/ENCFF679QQL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF233AQD bam alignments ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 3 101 ENCFF075NLI, ENCFF705CNE, ENCFF807MUK 5340587888 ENCODE Processing Pipeline 24581d9998178308aa917506c2f594d4 https://www.encodeproject.org/files/ENCFF233AQD/@@download/ENCFF233AQD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF156RXB bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF203JRY, ENCFF343SQT, ENCFF807MUK 5753271889 ENCODE Processing Pipeline 5fef984c116ece24b3a9ce28282e0422 https://www.encodeproject.org/files/ENCFF156RXB/@@download/ENCFF156RXB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF996TTV bam alignments ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF161OGL, ENCFF522WIQ, ENCFF807MUK 5766914668 ENCODE Processing Pipeline 182df267e8512d9c750b334f57a3a9bb https://www.encodeproject.org/files/ENCFF996TTV/@@download/ENCFF996TTV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF750PMI bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 100 ENCFF244ECJ, ENCFF335ZAN, ENCFF807MUK 3310221844 ENCODE Processing Pipeline f48ee944d1bec217c4b4e04a202246e4 https://www.encodeproject.org/files/ENCFF750PMI/@@download/ENCFF750PMI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF510XHR bam alignments ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 100 ENCFF196AKS, ENCFF642JVD, ENCFF807MUK 3967412478 ENCODE Processing Pipeline bcfab615b550faa4733ab5cbf79768d4 https://www.encodeproject.org/files/ENCFF510XHR/@@download/ENCFF510XHR.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF869KUX bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF168ZLV, ENCFF807MUK, ENCFF829LEL 6867999007 ENCODE Processing Pipeline 13f7cd1b26a29f3269795cdad65d1035 https://www.encodeproject.org/files/ENCFF869KUX/@@download/ENCFF869KUX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF829MEE bam alignments ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF217JJM, ENCFF424HPQ, ENCFF807MUK 4649347597 ENCODE Processing Pipeline 6bc631cafbc1e87bf5ec73ea2699e46d https://www.encodeproject.org/files/ENCFF829MEE/@@download/ENCFF829MEE.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF634ELX bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 36 ENCFF807MUK, ENCFF818LOF 613962324 ENCODE Processing Pipeline cb83ce5e763a74e401d877d14b87bba5 https://www.encodeproject.org/files/ENCFF634ELX/@@download/ENCFF634ELX.bam hg19 released low read length, low read depth ENCFF464GJM bam alignments ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 3 36 ENCFF079VLS, ENCFF807MUK 1130557828 ENCODE Processing Pipeline a3409f564b1044a95b71eba44771f46d https://www.encodeproject.org/files/ENCFF464GJM/@@download/ENCFF464GJM.bam hg19 released low read length, low read depth ENCFF338OPD bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF029VAX, ENCFF251KLG, ENCFF807MUK 5617424938 ENCODE Processing Pipeline 4117fc9f49dfed0d711c6aa83e15dc0a https://www.encodeproject.org/files/ENCFF338OPD/@@download/ENCFF338OPD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF642PIG bam alignments ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF202RSF, ENCFF783NLA, ENCFF807MUK 6749449237 ENCODE Processing Pipeline d90107573f4c77fd6c6f260988e75d27 https://www.encodeproject.org/files/ENCFF642PIG/@@download/ENCFF642PIG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF331VSA bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 100 ENCFF234PZS, ENCFF758VSS, ENCFF807MUK 4823353553 ENCODE Processing Pipeline c3e8c2163f517f0ad54f0ffa3b268242 https://www.encodeproject.org/files/ENCFF331VSA/@@download/ENCFF331VSA.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF817XAJ bam alignments ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 100 ENCFF275AJE, ENCFF807MUK, ENCFF939BBH 5203169099 ENCODE Processing Pipeline 12277ca989dc808dccc82d216424409c https://www.encodeproject.org/files/ENCFF817XAJ/@@download/ENCFF817XAJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF584YHO bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 3 100 ENCFF037ZGC, ENCFF807MUK, ENCFF850KNY 3956033575 ENCODE Processing Pipeline b9119e94f1746d3348b99fb68f38dffa https://www.encodeproject.org/files/ENCFF584YHO/@@download/ENCFF584YHO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF890PMJ bam alignments ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2017-05-17 ENCODE 4 100 ENCFF087CSK, ENCFF660QON, ENCFF807MUK 4762761081 ENCODE Processing Pipeline 6ce5eda8f92bad464a098c283692fea6 https://www.encodeproject.org/files/ENCFF890PMJ/@@download/ENCFF890PMJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF407ZMZ bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDD, ENCFF807MUK 910437904 ENCODE Processing Pipeline ab78e7d7d00a745af9181c4d2f6e4f85 https://www.encodeproject.org/files/ENCFF407ZMZ/@@download/ENCFF407ZMZ.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF252WWC bam alignments ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDL, ENCFF807MUK 789020340 ENCODE Processing Pipeline 47918ce17d6fe257c312a800260a5c78 https://www.encodeproject.org/files/ENCFF252WWC/@@download/ENCFF252WWC.bam hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF132TRH bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF051TFE, ENCFF102GYW, ENCFF807MUK 4693486893 ENCODE Processing Pipeline ef0d1381032962bd42c91548357d4a78 https://www.encodeproject.org/files/ENCFF132TRH/@@download/ENCFF132TRH.bam hg19 released missing genetic modification characterization missing control alignments ENCFF422TQA bam alignments ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF525CDJ, ENCFF807MUK, ENCFF991IIZ 5453255915 ENCODE Processing Pipeline 27eab9fb645512069d9dc9075023cbc1 https://www.encodeproject.org/files/ENCFF422TQA/@@download/ENCFF422TQA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF827OOM bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAF, ENCFF807MUK 809675850 ENCODE Processing Pipeline 24fa2284ed8d6b08a59590f234a9be9c https://www.encodeproject.org/files/ENCFF827OOM/@@download/ENCFF827OOM.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF466OCY bam alignments ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAE, ENCFF807MUK 881539143 ENCODE Processing Pipeline 2eea011a0000403933e3311c630c022a https://www.encodeproject.org/files/ENCFF466OCY/@@download/ENCFF466OCY.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF623SOH bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 101 ENCFF305RJU, ENCFF807MUK, ENCFF903QJF 4897864211 ENCODE Processing Pipeline 180567a9f2dbbd7a9a8d65dcc1dfce03 https://www.encodeproject.org/files/ENCFF623SOH/@@download/ENCFF623SOH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF946UWI bam alignments ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 3 101 ENCFF642UJL, ENCFF807MUK, ENCFF842HVL 4687923922 ENCODE Processing Pipeline 2b41033d6dba4d01db92388e8de5d7ae https://www.encodeproject.org/files/ENCFF946UWI/@@download/ENCFF946UWI.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF760BKV bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF105RCC, ENCFF569UHH, ENCFF807MUK 4990150879 ENCODE Processing Pipeline 33e3cfe20f560ec9c83bdbf874c8e045 https://www.encodeproject.org/files/ENCFF760BKV/@@download/ENCFF760BKV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF413KOS bam alignments ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF729ADA, ENCFF807MUK, ENCFF951MCE 5236217079 ENCODE Processing Pipeline 2116a572cb2e8b668cba8046c7037472 https://www.encodeproject.org/files/ENCFF413KOS/@@download/ENCFF413KOS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF265BKP bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPT, ENCFF002EGM, ENCFF807MUK 5794354327 ENCODE Processing Pipeline b8a858bcfc92e2b0174ac4b872b9afce https://www.encodeproject.org/files/ENCFF265BKP/@@download/ENCFF265BKP.bam hg19 released mild to moderate bottlenecking ENCFF701AFL bam alignments ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPQ, ENCFF002EGU, ENCFF807MUK 6417680920 ENCODE Processing Pipeline f8fc56d2422a2631c8df8b5ca600f8f4 https://www.encodeproject.org/files/ENCFF701AFL/@@download/ENCFF701AFL.bam hg19 released mild to moderate bottlenecking ENCFF171DED bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF438IPE, ENCFF664BVY, ENCFF807MUK 4512941101 ENCODE Processing Pipeline 488bb42904d3aec848c6380310e8a034 https://www.encodeproject.org/files/ENCFF171DED/@@download/ENCFF171DED.bam hg19 released missing genetic modification characterization missing control alignments ENCFF485MII bam alignments ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF317VCZ, ENCFF807MUK, ENCFF830YAY 3973944582 ENCODE Processing Pipeline 9f26dc520ac034ce3841cee47161613c https://www.encodeproject.org/files/ENCFF485MII/@@download/ENCFF485MII.bam hg19 released missing genetic modification characterization missing control alignments ENCFF197XMF bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 100 ENCFF020AAA, ENCFF807MUK, ENCFF993JOH 5231648211 ENCODE Processing Pipeline 076b50e92036e0555fc56b417e956e4e https://www.encodeproject.org/files/ENCFF197XMF/@@download/ENCFF197XMF.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF013XVD bam alignments ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 100 ENCFF031GLY, ENCFF807MUK, ENCFF835JHL 5540672195 ENCODE Processing Pipeline cc0df5a9a88b7467866661e82e418bc2 https://www.encodeproject.org/files/ENCFF013XVD/@@download/ENCFF013XVD.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF721SJQ bam alignments ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF442EWW, ENCFF604ERM, ENCFF807MUK 2744694457 ENCODE Processing Pipeline bbd8b3ed3a7afe55661be664d0a721f8 https://www.encodeproject.org/files/ENCFF721SJQ/@@download/ENCFF721SJQ.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF494YCC bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 101 ENCFF734ILU, ENCFF807MUK, ENCFF936XZX 3682972834 ENCODE Processing Pipeline f0c25fdbe2a221985d8999733b36351d https://www.encodeproject.org/files/ENCFF494YCC/@@download/ENCFF494YCC.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF571UJH bam alignments ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 101 ENCFF052DTI, ENCFF160WFY, ENCFF807MUK 5201367451 ENCODE Processing Pipeline 1d907d5a3e4116123bbe307fd84a0712 https://www.encodeproject.org/files/ENCFF571UJH/@@download/ENCFF571UJH.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF687COF bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF163OQM, ENCFF633IRT, ENCFF807MUK 3697397365 ENCODE Processing Pipeline 8bd22e32d82ed2aac0c7b05f5d8f8f0b https://www.encodeproject.org/files/ENCFF687COF/@@download/ENCFF687COF.bam hg19 released ENCFF403JKC bam alignments ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF484GUE, ENCFF539DMV, ENCFF807MUK 5398740748 ENCODE Processing Pipeline d6e141fce46bb243d377319a13513410 https://www.encodeproject.org/files/ENCFF403JKC/@@download/ENCFF403JKC.bam hg19 released ENCFF599UMI bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF260CTF, ENCFF807MUK, ENCFF959CFI 3328064038 ENCODE Processing Pipeline dd163be14c67ac70ccb4b736f4185bd5 https://www.encodeproject.org/files/ENCFF599UMI/@@download/ENCFF599UMI.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF928REO bam alignments ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF164JCA, ENCFF344DMA, ENCFF807MUK 3267135358 ENCODE Processing Pipeline ef18442585702fcf79cdf5c60033b16e https://www.encodeproject.org/files/ENCFF928REO/@@download/ENCFF928REO.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF531OJP bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 4 100 ENCFF473SIW, ENCFF807MUK, ENCFF993SXO 6215617125 ENCODE Processing Pipeline a293db540e0b76b79a77618df1859cec https://www.encodeproject.org/files/ENCFF531OJP/@@download/ENCFF531OJP.bam hg19 released borderline replicate concordance ENCFF407PCP bam alignments ENCSR210ZYL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NBN-human DNA False 2017-05-18 ENCODE 3 100 ENCFF501XST, ENCFF563CUE, ENCFF807MUK 7343210581 ENCODE Processing Pipeline 3fd48717ea28215f784d76336b70d7b2 https://www.encodeproject.org/files/ENCFF407PCP/@@download/ENCFF407PCP.bam hg19 released borderline replicate concordance ENCFF779HOG bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 76 ENCFF137XSL, ENCFF807MUK 1156158119 ENCODE Processing Pipeline e04f1a8e938fbec6e3d5d97820b96b8f https://www.encodeproject.org/files/ENCFF779HOG/@@download/ENCFF779HOG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF357QDN bam alignments ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 76 ENCFF240SSO, ENCFF807MUK 4109266070 ENCODE Processing Pipeline 03fbccc5a59aeb3bba5420d5e635c559 https://www.encodeproject.org/files/ENCFF357QDN/@@download/ENCFF357QDN.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF261NWL bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF695ICE, ENCFF807MUK, ENCFF962THE 4839799875 ENCODE Processing Pipeline 552e6e4844fcae1cf4965a57c92a8213 https://www.encodeproject.org/files/ENCFF261NWL/@@download/ENCFF261NWL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF478KXP bam alignments ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF174BEA, ENCFF710WZA, ENCFF807MUK 4908488036 ENCODE Processing Pipeline 148e555051607beb0e377eedaf9e5516 https://www.encodeproject.org/files/ENCFF478KXP/@@download/ENCFF478KXP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF393RUJ bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 50 ENCFF395VGH, ENCFF807MUK 864622523 ENCODE Processing Pipeline 92bf620f4587a56ef9bd2e00dae9973d https://www.encodeproject.org/files/ENCFF393RUJ/@@download/ENCFF393RUJ.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF085FPP bam alignments ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 50 ENCFF807MUK, ENCFF967ZPY 880022900 ENCODE Processing Pipeline b5908fcff7fa702d28cb963132e16d17 https://www.encodeproject.org/files/ENCFF085FPP/@@download/ENCFF085FPP.bam hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF469URD bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF038XSJ, ENCFF185DEL, ENCFF807MUK 4470779841 ENCODE Processing Pipeline 64f451c9676667d18785ce80d74eb42e https://www.encodeproject.org/files/ENCFF469URD/@@download/ENCFF469URD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF150NDP bam alignments ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF652POL, ENCFF725NIO, ENCFF807MUK 3730658736 ENCODE Processing Pipeline 2620df45c47706eecac8c685538e4a56 https://www.encodeproject.org/files/ENCFF150NDP/@@download/ENCFF150NDP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF786QGA bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF848FCP 1011446693 ENCODE Processing Pipeline 4cd0ceebdb0b580492e2b103f18803fb https://www.encodeproject.org/files/ENCFF786QGA/@@download/ENCFF786QGA.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF261DNQ bam alignments ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 50 ENCFF186UNP, ENCFF807MUK 1389118489 ENCODE Processing Pipeline 76bed7723d23a5f8673037f510ffd5bf https://www.encodeproject.org/files/ENCFF261DNQ/@@download/ENCFF261DNQ.bam hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF806CJS bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF641MET, ENCFF807MUK, ENCFF889CIT 430948053 ENCODE Processing Pipeline b97a2819a9129a4accd263b32d58f77a https://www.encodeproject.org/files/ENCFF806CJS/@@download/ENCFF806CJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF119AKS bam alignments ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF481WGG, ENCFF644FQD, ENCFF807MUK 400961139 ENCODE Processing Pipeline 7f086fec185ed6473a6414ca3b06b55f https://www.encodeproject.org/files/ENCFF119AKS/@@download/ENCFF119AKS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF380DQS bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 3 ENCFF180XGO, ENCFF807MUK, ENCFF988NSQ 1076891192 ENCODE Processing Pipeline 4536f8285bdeb1de706beabc4213f491 https://www.encodeproject.org/files/ENCFF380DQS/@@download/ENCFF380DQS.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF487EDR bam alignments ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human DNA False 2017-12-01 ENCODE 4 ENCFF166AWJ, ENCFF358JWM, ENCFF807MUK 1290696666 ENCODE Processing Pipeline 356c38ae1f7b804628d0a3bf9a0c7065 https://www.encodeproject.org/files/ENCFF487EDR/@@download/ENCFF487EDR.bam hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF606EGM bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 100 ENCFF089HED, ENCFF807MUK, ENCFF841ZWA 4561963669 ENCODE Processing Pipeline 2b7d55163ed79bc5fff1833b03e98d15 https://www.encodeproject.org/files/ENCFF606EGM/@@download/ENCFF606EGM.bam hg19 released mild to moderate bottlenecking ENCFF799UMW bam alignments ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 100 ENCFF035MMH, ENCFF800CLX, ENCFF807MUK 5676426005 ENCODE Processing Pipeline 8f2f98d1e656c323681af81789c59649 https://www.encodeproject.org/files/ENCFF799UMW/@@download/ENCFF799UMW.bam hg19 released mild to moderate bottlenecking ENCFF152TEK bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 40 ENCFF405TWQ, ENCFF539SVN, ENCFF807MUK 413729962 ENCODE Processing Pipeline d2e401d1b0d7c5a3348cd237c2b7f59a https://www.encodeproject.org/files/ENCFF152TEK/@@download/ENCFF152TEK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF584SKU bam alignments ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 40 ENCFF426HJF, ENCFF455MEZ, ENCFF807MUK 372645427 ENCODE Processing Pipeline b8875887b69057cbe546b12a7c9056a2 https://www.encodeproject.org/files/ENCFF584SKU/@@download/ENCFF584SKU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF070IDW bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 101 ENCFF600HHA, ENCFF807MUK, ENCFF965WYW 4773838516 ENCODE Processing Pipeline 4d0b717a3c00c609d0fbda505b0da57b https://www.encodeproject.org/files/ENCFF070IDW/@@download/ENCFF070IDW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF347ZFD bam alignments ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 101 ENCFF319JUQ, ENCFF481WSE, ENCFF807MUK 7223264466 ENCODE Processing Pipeline 00b5ae691ed8fae46abb1d593de6fa23 https://www.encodeproject.org/files/ENCFF347ZFD/@@download/ENCFF347ZFD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF252NHP bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF044LTS, ENCFF531UQG, ENCFF807MUK 3001222249 ENCODE Processing Pipeline 254263894d22164fa5676905536f9120 https://www.encodeproject.org/files/ENCFF252NHP/@@download/ENCFF252NHP.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF037RQQ bam alignments ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF317NXG, ENCFF741BVE, ENCFF807MUK 3006665060 ENCODE Processing Pipeline 70d5bf2c52433d3e9d38e40a4a22e08a https://www.encodeproject.org/files/ENCFF037RQQ/@@download/ENCFF037RQQ.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF747PCD bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOX, ENCFF002EFV, ENCFF807MUK 4592581668 ENCODE Processing Pipeline 6b7cf9f68fe1cd540ecb9abed51eec8a https://www.encodeproject.org/files/ENCFF747PCD/@@download/ENCFF747PCD.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF558XOV bam alignments ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOY, ENCFF002DUB, ENCFF807MUK 3483369737 ENCODE Processing Pipeline 8d2aca8ca825423d0b8cc9da8853b4e9 https://www.encodeproject.org/files/ENCFF558XOV/@@download/ENCFF558XOV.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF600TNX bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF161FHO, ENCFF807MUK 540523904 ENCODE Processing Pipeline a37e4a0e1741cf4e8dde712ae3e2ce0b https://www.encodeproject.org/files/ENCFF600TNX/@@download/ENCFF600TNX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF720XTH bam alignments ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF127HYV, ENCFF807MUK 401466469 ENCODE Processing Pipeline 4f9f132604d64478cf78abc4aa405338 https://www.encodeproject.org/files/ENCFF720XTH/@@download/ENCFF720XTH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF352OYX bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF707YEY, ENCFF807MUK 1023716075 ENCODE Processing Pipeline ed60c5d9d6efc627e9cc39fbc261d2fe https://www.encodeproject.org/files/ENCFF352OYX/@@download/ENCFF352OYX.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF069NTQ bam alignments ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF690UNT, ENCFF807MUK 756925775 ENCODE Processing Pipeline 7f41d85f8de80becef44fd328366101f https://www.encodeproject.org/files/ENCFF069NTQ/@@download/ENCFF069NTQ.bam hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF928QMZ bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 4 100 ENCFF103BRX, ENCFF643QTB, ENCFF807MUK 4918527323 ENCODE Processing Pipeline 6b8e971b6ef311f9090ccb4570bbbe24 https://www.encodeproject.org/files/ENCFF928QMZ/@@download/ENCFF928QMZ.bam hg19 released mild to moderate bottlenecking ENCFF550WAC bam alignments ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human DNA False 2016-07-05 ENCODE 3 100 ENCFF211HML, ENCFF238ZLM, ENCFF807MUK 5183070486 ENCODE Processing Pipeline 6d82c59db6318be7e0944ec7adcce6d1 https://www.encodeproject.org/files/ENCFF550WAC/@@download/ENCFF550WAC.bam hg19 released mild to moderate bottlenecking ENCFF377NHQ bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF148YZK, ENCFF807MUK, ENCFF839AXL 5359063638 ENCODE Processing Pipeline 8155d6e8c942e76638c53bf639fc60c2 https://www.encodeproject.org/files/ENCFF377NHQ/@@download/ENCFF377NHQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF060RLW bam alignments ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF150KCT, ENCFF807MUK, ENCFF961HPB 5449406355 ENCODE Processing Pipeline 1c88b460c67aa7427b03f2edce7f975a https://www.encodeproject.org/files/ENCFF060RLW/@@download/ENCFF060RLW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF847CAU bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF110KHM, ENCFF807MUK, ENCFF861XPL 6057518590 ENCODE Processing Pipeline 642480c71ab8dfbfdd9fc3a309f9e7a1 https://www.encodeproject.org/files/ENCFF847CAU/@@download/ENCFF847CAU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF180VNC bam alignments ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246IMR, ENCFF691EHP, ENCFF807MUK 7401355686 ENCODE Processing Pipeline 5421e5cf7c832ba4b4d91302121b82da https://www.encodeproject.org/files/ENCFF180VNC/@@download/ENCFF180VNC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF990UBY bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 100 ENCFF046BNP, ENCFF673POI, ENCFF807MUK 2427558169 ENCODE Processing Pipeline b82ee0e39d49b4b9256780f1ba57a5bb https://www.encodeproject.org/files/ENCFF990UBY/@@download/ENCFF990UBY.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF978HGN bam alignments ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 3 101 ENCFF061LQH, ENCFF294AIF, ENCFF807MUK 4978857912 ENCODE Processing Pipeline 50166d70fd53e28881f70f3d0d527c5d https://www.encodeproject.org/files/ENCFF978HGN/@@download/ENCFF978HGN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF094UHU bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF268OZO, ENCFF286NOT, ENCFF807MUK 3841218256 ENCODE Processing Pipeline 5aed8267fed692adf868b878426dc4d7 https://www.encodeproject.org/files/ENCFF094UHU/@@download/ENCFF094UHU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF387CIP bam alignments ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF015NKR, ENCFF336XLE, ENCFF807MUK 4816317905 ENCODE Processing Pipeline aed2555ce4ed0c6cbe8d56e20bf78f6b https://www.encodeproject.org/files/ENCFF387CIP/@@download/ENCFF387CIP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF808IEJ bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 100 ENCFF746KTH, ENCFF749IGF, ENCFF807MUK 6210597113 ENCODE Processing Pipeline fdb93a161772e5349283aac7dbb7cee8 https://www.encodeproject.org/files/ENCFF808IEJ/@@download/ENCFF808IEJ.bam hg19 released ENCFF523AHK bam alignments ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 100 ENCFF009QNH, ENCFF089RFH, ENCFF807MUK 5334395788 ENCODE Processing Pipeline 8abe68fea25c76fd5ee627dcbdb63c9a https://www.encodeproject.org/files/ENCFF523AHK/@@download/ENCFF523AHK.bam hg19 released ENCFF384ART bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF522POF, ENCFF807MUK, ENCFF926PZX 4046947695 ENCODE Processing Pipeline 97607807c48e16caffc8cd81f90613af https://www.encodeproject.org/files/ENCFF384ART/@@download/ENCFF384ART.bam hg19 released missing genetic modification characterization missing control alignments ENCFF229ETI bam alignments ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF210PVG, ENCFF438MFB, ENCFF807MUK 4559356952 ENCODE Processing Pipeline dc3d5ec881fc7b5ddd360c6582f575a3 https://www.encodeproject.org/files/ENCFF229ETI/@@download/ENCFF229ETI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF746MMS bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF807MUK, ENCFF817VCN, ENCFF947BPK 5071212190 ENCODE Processing Pipeline bdbaba8bc3dc5059aeefc693887d3d23 https://www.encodeproject.org/files/ENCFF746MMS/@@download/ENCFF746MMS.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF968SMN bam alignments ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF466RJA, ENCFF548XLM, ENCFF807MUK 4062031294 ENCODE Processing Pipeline 37d0c49610ba06f535a835a7917a1af3 https://www.encodeproject.org/files/ENCFF968SMN/@@download/ENCFF968SMN.bam hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204DQZ bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 100 ENCFF214MWL, ENCFF664YJD, ENCFF807MUK 4867192478 ENCODE Processing Pipeline 1166992b99b8f16793987b404670ebda https://www.encodeproject.org/files/ENCFF204DQZ/@@download/ENCFF204DQZ.bam hg19 released ENCFF073BGI bam alignments ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 100 ENCFF324VNE, ENCFF598OBQ, ENCFF807MUK 3928499421 ENCODE Processing Pipeline a9d4533d0f50b42c5715d8d6d0bc436e https://www.encodeproject.org/files/ENCFF073BGI/@@download/ENCFF073BGI.bam hg19 released ENCFF352KPP bam alignments ENCSR175BVD ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF068NIQ, ENCFF229BOO, ENCFF599ZRC, ENCFF807MUK, ENCFF844DFN 5040450900 ENCODE Processing Pipeline 2251cfdd890f2f4de9b0419900137a0d https://www.encodeproject.org/files/ENCFF352KPP/@@download/ENCFF352KPP.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF989OSX bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF429KAX, ENCFF807MUK, ENCFF887TVH 3202535359 ENCODE Processing Pipeline 45b9f6977ba52a1c75d0bebbb9678ad8 https://www.encodeproject.org/files/ENCFF989OSX/@@download/ENCFF989OSX.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF853EMP bam alignments ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF583IRH, ENCFF600EDO, ENCFF807MUK 3401950065 ENCODE Processing Pipeline 6eae94a18a68352a92be423af4199b14 https://www.encodeproject.org/files/ENCFF853EMP/@@download/ENCFF853EMP.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF763YKD bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 3 100 ENCFF023JKK, ENCFF807MUK, ENCFF882DKX 3369954043 ENCODE Processing Pipeline bf18b624fca8d9582d1a24b416c6b4c4 https://www.encodeproject.org/files/ENCFF763YKD/@@download/ENCFF763YKD.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF988PYL bam alignments ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 100 ENCFF378WJL, ENCFF718GJY, ENCFF807MUK 5133059846 ENCODE Processing Pipeline 34393d649335746fbd7c416a4ad19d9d https://www.encodeproject.org/files/ENCFF988PYL/@@download/ENCFF988PYL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF884VSM bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF644SON, ENCFF693AUP, ENCFF807MUK 3661651480 ENCODE Processing Pipeline a7b3ab5328155a5cb62b237a9ffba332 https://www.encodeproject.org/files/ENCFF884VSM/@@download/ENCFF884VSM.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF789HSB bam alignments ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF101WQA, ENCFF778REX, ENCFF807MUK 3565954778 ENCODE Processing Pipeline 5bb4cdd6a1510c7a8fb2fedd4217e5b4 https://www.encodeproject.org/files/ENCFF789HSB/@@download/ENCFF789HSB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF880EQU bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 40 ENCFF462CQQ, ENCFF807MUK 457664659 ENCODE Processing Pipeline 811115829e7951f9c8769b5f7906b9e7 https://www.encodeproject.org/files/ENCFF880EQU/@@download/ENCFF880EQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF221UBB bam alignments ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 40 ENCFF400OAC, ENCFF807MUK 587757813 ENCODE Processing Pipeline a7184fbe6e54e4356308244610d4b6a1 https://www.encodeproject.org/files/ENCFF221UBB/@@download/ENCFF221UBB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF424DRA bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF413POC, ENCFF807MUK, ENCFF943NZH 3144941761 ENCODE Processing Pipeline 2cf554e1e60c403cf05e1f281dacb21c https://www.encodeproject.org/files/ENCFF424DRA/@@download/ENCFF424DRA.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF063SNY bam alignments ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF211WHO, ENCFF589GMJ, ENCFF807MUK 5491282953 ENCODE Processing Pipeline 1da73ae829ec17cd9fa65d40e3827686 https://www.encodeproject.org/files/ENCFF063SNY/@@download/ENCFF063SNY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF527XRI bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF645KVH, ENCFF807MUK 674807359 ENCODE Processing Pipeline 87ec28539e47a2fa33d6d13b07122da6 https://www.encodeproject.org/files/ENCFF527XRI/@@download/ENCFF527XRI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF447XXO bam alignments ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF807MUK, ENCFF960VKG 653190197 ENCODE Processing Pipeline f81e92f31837545e882cc88e02369ffe https://www.encodeproject.org/files/ENCFF447XXO/@@download/ENCFF447XXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF132OWJ bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 76 ENCFF440WEY, ENCFF807MUK 1735183324 ENCODE Processing Pipeline 9fe1392f35d8ef4cb519c34166f69820 https://www.encodeproject.org/files/ENCFF132OWJ/@@download/ENCFF132OWJ.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF044VWD bam alignments ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 76 ENCFF371AJH, ENCFF807MUK, ENCFF855FAY 1313952349 ENCODE Processing Pipeline 830ab558eba326d415345807179102a9 https://www.encodeproject.org/files/ENCFF044VWD/@@download/ENCFF044VWD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF146EZL bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 100 ENCFF016LTD, ENCFF517FFT, ENCFF807MUK 5254021264 ENCODE Processing Pipeline 7352af532b9174262bc87b357ceef087 https://www.encodeproject.org/files/ENCFF146EZL/@@download/ENCFF146EZL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF823JVZ bam alignments ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 4 101 ENCFF222LNP, ENCFF561NID, ENCFF807MUK 5410949542 ENCODE Processing Pipeline a9201c29bf684387ae8ad6e261528983 https://www.encodeproject.org/files/ENCFF823JVZ/@@download/ENCFF823JVZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF392OKA bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF011RLG, ENCFF268FKS, ENCFF807MUK 5435432590 ENCODE Processing Pipeline e921a38955c523863c4f3ff90ca38361 https://www.encodeproject.org/files/ENCFF392OKA/@@download/ENCFF392OKA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF478LIY bam alignments ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF237ACY, ENCFF258AHN, ENCFF807MUK 6223585302 ENCODE Processing Pipeline 4f4fb72a11c67847dad40c752d53db83 https://www.encodeproject.org/files/ENCFF478LIY/@@download/ENCFF478LIY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF789IXD bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 36 ENCFF015DNC, ENCFF807MUK 621916170 ENCODE Processing Pipeline bcc9149b6d6eb00cf8c4c98af6afa95a https://www.encodeproject.org/files/ENCFF789IXD/@@download/ENCFF789IXD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF787LCO bam alignments ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 36 ENCFF318EXS, ENCFF807MUK 606109653 ENCODE Processing Pipeline a3bc43d5f809d1b0c30ac3c778069d03 https://www.encodeproject.org/files/ENCFF787LCO/@@download/ENCFF787LCO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF216EBS bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF807MUK, ENCFF983DFB 400538142 ENCODE Processing Pipeline 2293c54b3d0e35f1ce374b1d6663e4d8 https://www.encodeproject.org/files/ENCFF216EBS/@@download/ENCFF216EBS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF165COO bam alignments ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF590TBW, ENCFF807MUK 410975526 ENCODE Processing Pipeline 601572b8fae36b61c40322024b6dd204 https://www.encodeproject.org/files/ENCFF165COO/@@download/ENCFF165COO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF376ISC bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 100 ENCFF025MOI, ENCFF608JOK, ENCFF807MUK 3752858471 ENCODE Processing Pipeline 7b138886894ac422a02e509ae549d3ab https://www.encodeproject.org/files/ENCFF376ISC/@@download/ENCFF376ISC.bam hg19 released borderline replicate concordance, low read depth ENCFF359CBG bam alignments ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 100 ENCFF282GIL, ENCFF356VYM, ENCFF807MUK 5348158669 ENCODE Processing Pipeline 1a6b3999a0be816e6508c4cd370d0497 https://www.encodeproject.org/files/ENCFF359CBG/@@download/ENCFF359CBG.bam hg19 released borderline replicate concordance, low read depth ENCFF658UTU bam alignments ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF650USF, ENCFF807MUK, ENCFF837BCE 1770871078 ENCODE Processing Pipeline e7f92d6cbce3e6f59e8f5e121c640602 https://www.encodeproject.org/files/ENCFF658UTU/@@download/ENCFF658UTU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF463TFB bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 100 ENCFF158WAX, ENCFF280MUX, ENCFF807MUK 5866524695 ENCODE Processing Pipeline 8462bfd8661da836ef80dbb493333ace https://www.encodeproject.org/files/ENCFF463TFB/@@download/ENCFF463TFB.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF377LXP bam alignments ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 100 ENCFF274BMI, ENCFF692YLS, ENCFF807MUK 6319015355 ENCODE Processing Pipeline 0b57acabd7d0697c97d025244cb55906 https://www.encodeproject.org/files/ENCFF377LXP/@@download/ENCFF377LXP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF431VZN bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 4 100 ENCFF216ZWY, ENCFF438VPJ, ENCFF807MUK 2377933318 ENCODE Processing Pipeline 0ff95db1abec2bfec31e52bbf3b1bf4c https://www.encodeproject.org/files/ENCFF431VZN/@@download/ENCFF431VZN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF720VMA bam alignments ENCSR987MTA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA False 2017-01-31 ENCODE 5 100 ENCFF542AWV, ENCFF588AQE, ENCFF807MUK 2783670571 ENCODE Processing Pipeline 3b3e3ec67d9dc808dd26b1891a9b0c59 https://www.encodeproject.org/files/ENCFF720VMA/@@download/ENCFF720VMA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth duplicate lane review ENCFF228BXR bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 76 ENCFF248HFJ, ENCFF411AYK, ENCFF807MUK 1671033518 ENCODE Processing Pipeline c4e1307dd51fcd7073e155f29a815b1a https://www.encodeproject.org/files/ENCFF228BXR/@@download/ENCFF228BXR.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF609XOY bam alignments ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 76 ENCFF807MUK, ENCFF932CIF 1697645646 ENCODE Processing Pipeline 8d033673aa47ef80dde21c715cabecfa https://www.encodeproject.org/files/ENCFF609XOY/@@download/ENCFF609XOY.bam hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF648UKL bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF034WZZ, ENCFF350AMO, ENCFF807MUK 5771070157 ENCODE Processing Pipeline ffa58bb0007d33052218511d7b051ccd https://www.encodeproject.org/files/ENCFF648UKL/@@download/ENCFF648UKL.bam hg19 released borderline replicate concordance ENCFF808HEF bam alignments ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF077DIB, ENCFF807MUK, ENCFF829YQD 5627213225 ENCODE Processing Pipeline c361910b4e5b23ba73b3c3fe2a59ccfb https://www.encodeproject.org/files/ENCFF808HEF/@@download/ENCFF808HEF.bam hg19 released borderline replicate concordance ENCFF791YJK bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEG, ENCFF807MUK 1061498700 ENCODE Processing Pipeline 427d87371e59c873ad6e54381a95e79e https://www.encodeproject.org/files/ENCFF791YJK/@@download/ENCFF791YJK.bam hg19 released low read length, borderline replicate concordance ENCFF990TGI bam alignments ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EEH, ENCFF807MUK 918759662 ENCODE Processing Pipeline 8a5eeeaa4621bff5b64f94d41f6678cf https://www.encodeproject.org/files/ENCFF990TGI/@@download/ENCFF990TGI.bam hg19 released low read length, borderline replicate concordance ENCFF002SPV bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002EDF, ENCFF807MUK 949063660 ENCODE Processing Pipeline d7acef6d19483afc748b16abb4fda67a https://www.encodeproject.org/files/ENCFF002SPV/@@download/ENCFF002SPV.bam hg19 released low read length ENCFF226KER bam alignments ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDH, ENCFF807MUK 1065080686 ENCODE Processing Pipeline a9936175408974600f64fc18aa957090 https://www.encodeproject.org/files/ENCFF226KER/@@download/ENCFF226KER.bam hg19 released low read length ENCFF588SWK bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF332FPJ, ENCFF807MUK 706562332 ENCODE Processing Pipeline 2a00894787c908c6a9ecf0498461185b https://www.encodeproject.org/files/ENCFF588SWK/@@download/ENCFF588SWK.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF929MTA bam alignments ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 36 ENCFF452HXG, ENCFF497MMJ, ENCFF807MUK 1391430997 ENCODE Processing Pipeline 13a13830a72a4d77aa3177ca15fc449a https://www.encodeproject.org/files/ENCFF929MTA/@@download/ENCFF929MTA.bam hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF021FPF bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF069MUW, ENCFF807MUK, ENCFF965LJP 3957269805 ENCODE Processing Pipeline ecd4c63785ae968017126b12012da3fb https://www.encodeproject.org/files/ENCFF021FPF/@@download/ENCFF021FPF.bam hg19 released missing genetic modification characterization missing control alignments ENCFF902WES bam alignments ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF382DBU, ENCFF807MUK, ENCFF923CFU 3815643618 ENCODE Processing Pipeline c6eb5d57cf9134e56604bc6c259b61cb https://www.encodeproject.org/files/ENCFF902WES/@@download/ENCFF902WES.bam hg19 released missing genetic modification characterization missing control alignments ENCFF125BUA bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147RGY, ENCFF413XPW, ENCFF807MUK 3913483807 ENCODE Processing Pipeline 0d0bf2349ec92f8ef6abd6419253b29f https://www.encodeproject.org/files/ENCFF125BUA/@@download/ENCFF125BUA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF573RBP bam alignments ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF139YAL, ENCFF238JFX, ENCFF807MUK 4508377356 ENCODE Processing Pipeline 9b5fe2f22ad6ee3b692aeff9a5c5648f https://www.encodeproject.org/files/ENCFF573RBP/@@download/ENCFF573RBP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF573GQJ bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002ECY, ENCFF807MUK 721756844 ENCODE Processing Pipeline ec60e61ed6eb416cc1af11832bc196db https://www.encodeproject.org/files/ENCFF573GQJ/@@download/ENCFF573GQJ.bam hg19 released low read length, low read depth ENCFF707LIB bam alignments ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDA, ENCFF807MUK 570933506 ENCODE Processing Pipeline 77aa19a4f0d5db98b70b971c47e7268d https://www.encodeproject.org/files/ENCFF707LIB/@@download/ENCFF707LIB.bam hg19 released low read length, low read depth ENCFF044MLU bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF017HJV, ENCFF575ZZC, ENCFF807MUK 450248431 ENCODE Processing Pipeline 03a0b51540cb6dc793ca77ec01910509 https://www.encodeproject.org/files/ENCFF044MLU/@@download/ENCFF044MLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF353XLY bam alignments ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF891ODG, ENCFF941PUJ 410591625 ENCODE Processing Pipeline 1246520b65a0c66e92f2e1f7ff3e77cb https://www.encodeproject.org/files/ENCFF353XLY/@@download/ENCFF353XLY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF750OED bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 3 100 ENCFF002EKY, ENCFF002ELC, ENCFF807MUK 4498058693 ENCODE Processing Pipeline db12297dbdb73737b404efbbfed07062 https://www.encodeproject.org/files/ENCFF750OED/@@download/ENCFF750OED.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF963AMS bam alignments ENCSR785OKZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RB1-human DNA formaldehyde False 2017-06-07 ENCODE 4 101 ENCFF212KHQ, ENCFF441MWI, ENCFF807MUK 6364770670 ENCODE Processing Pipeline 4ee72f4e128b61c0ee1d3803dabf54c3 https://www.encodeproject.org/files/ENCFF963AMS/@@download/ENCFF963AMS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF366PYR bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF223XLR, ENCFF238LLZ, ENCFF807MUK 556161727 ENCODE Processing Pipeline 42a3358ec6a87830aabc4e9c139d696f https://www.encodeproject.org/files/ENCFF366PYR/@@download/ENCFF366PYR.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF910NGM bam alignments ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF774WWF, ENCFF807MUK, ENCFF915BDU 524809132 ENCODE Processing Pipeline 224c6ba5a7bebb4eb199fbb01f8178f2 https://www.encodeproject.org/files/ENCFF910NGM/@@download/ENCFF910NGM.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF827QKJ bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF246YGR, ENCFF312XEN, ENCFF807MUK 4757188496 ENCODE Processing Pipeline 91764807bc100c7801b1a538fa6f0b31 https://www.encodeproject.org/files/ENCFF827QKJ/@@download/ENCFF827QKJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF388FXV bam alignments ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF426NQH, ENCFF807MUK, ENCFF957AJG 5562299569 ENCODE Processing Pipeline d86bbda9e2cedb2351f9a2969f19cf96 https://www.encodeproject.org/files/ENCFF388FXV/@@download/ENCFF388FXV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF759NKM bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF292BLL, ENCFF485SUN, ENCFF807MUK 4623723614 ENCODE Processing Pipeline 0db9a7cda5fbf4681b4825dc90c3a0db https://www.encodeproject.org/files/ENCFF759NKM/@@download/ENCFF759NKM.bam hg19 released missing genetic modification characterization missing control alignments ENCFF004WBX bam alignments ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF548NUZ, ENCFF800BVA, ENCFF807MUK 5270877086 ENCODE Processing Pipeline cb21f603d35b663fd6d2ace81af76168 https://www.encodeproject.org/files/ENCFF004WBX/@@download/ENCFF004WBX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF652BBA bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPZ, ENCFF002EGP, ENCFF807MUK 5796726074 ENCODE Processing Pipeline 0c4bdf2983f6aa7e1e48f7e8e5411c6a https://www.encodeproject.org/files/ENCFF652BBA/@@download/ENCFF652BBA.bam hg19 released antibody characterized with exemption ENCFF734GEN bam alignments ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPX, ENCFF002EGR, ENCFF807MUK 5441673160 ENCODE Processing Pipeline 9ae8bad051aa79e0a39cadfd9e722ec6 https://www.encodeproject.org/files/ENCFF734GEN/@@download/ENCFF734GEN.bam hg19 released antibody characterized with exemption ENCFF077LKL bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJL, ENCFF002EJS, ENCFF807MUK 5426634887 ENCODE Processing Pipeline a6c672bb4d719f48629ad87b3589a550 https://www.encodeproject.org/files/ENCFF077LKL/@@download/ENCFF077LKL.bam hg19 released antibody characterized with exemption ENCFF204XJS bam alignments ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EJQ, ENCFF002EJT, ENCFF807MUK 5380722249 ENCODE Processing Pipeline aa88107de96e61c5821435895e4499d8 https://www.encodeproject.org/files/ENCFF204XJS/@@download/ENCFF204XJS.bam hg19 released antibody characterized with exemption ENCFF486NOF bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF783FYL, ENCFF807MUK, ENCFF923XLP 6762554719 ENCODE Processing Pipeline 4f98ddf13fb98db928c4cbb41c1fcbf3 https://www.encodeproject.org/files/ENCFF486NOF/@@download/ENCFF486NOF.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF794TKO bam alignments ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF108FHI, ENCFF807MUK, ENCFF863MQV 7599465720 ENCODE Processing Pipeline 9c2f0abb8e648c335c7cc2c703d6c4d6 https://www.encodeproject.org/files/ENCFF794TKO/@@download/ENCFF794TKO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF933BLG bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 36 ENCFF101CQF, ENCFF629YQE, ENCFF807MUK 1363362824 ENCODE Processing Pipeline 3d21138eb5d91e99ab3c99cda0bd8035 https://www.encodeproject.org/files/ENCFF933BLG/@@download/ENCFF933BLG.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF753PJC bam alignments ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 36 ENCFF655GMJ, ENCFF807MUK 915842398 ENCODE Processing Pipeline 1567fa06cc6a21fae2b7c3cb16ce0db8 https://www.encodeproject.org/files/ENCFF753PJC/@@download/ENCFF753PJC.bam hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF367QVT bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 100 ENCFF109UIV, ENCFF748SHJ, ENCFF807MUK 4809740889 ENCODE Processing Pipeline 1200d62c19cc16131d98b8dd15321260 https://www.encodeproject.org/files/ENCFF367QVT/@@download/ENCFF367QVT.bam hg19 released mild to moderate bottlenecking ENCFF518IYV bam alignments ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 100 ENCFF126ENC, ENCFF198XWC, ENCFF807MUK 3934006731 ENCODE Processing Pipeline 9fc1d99c720498045a1f4b29616e10b0 https://www.encodeproject.org/files/ENCFF518IYV/@@download/ENCFF518IYV.bam hg19 released mild to moderate bottlenecking ENCFF194ECV bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 100 ENCFF120ALM, ENCFF140LSM, ENCFF807MUK 2916995781 ENCODE Processing Pipeline fe96a4a74d623d12ecbe40c2f67c8392 https://www.encodeproject.org/files/ENCFF194ECV/@@download/ENCFF194ECV.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF148ROD bam alignments ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 100 ENCFF233XOC, ENCFF439BDU, ENCFF807MUK 3860258647 ENCODE Processing Pipeline 6241195932b68086a9d2acd99b407f84 https://www.encodeproject.org/files/ENCFF148ROD/@@download/ENCFF148ROD.bam hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF080JID bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 4 36 ENCFF002ECD, ENCFF807MUK 873799080 ENCODE Processing Pipeline b67e0a8d2465045cde5bbf7ebefa983c https://www.encodeproject.org/files/ENCFF080JID/@@download/ENCFF080JID.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF517IMC bam alignments ENCSR900XDB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 5 36 ENCFF002ECH, ENCFF807MUK 906767182 ENCODE Processing Pipeline 2c25c5de03fcb6a411aefbf346749b90 https://www.encodeproject.org/files/ENCFF517IMC/@@download/ENCFF517IMC.bam hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF773HIM bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 76 ENCFF409OHJ, ENCFF727LRA, ENCFF807MUK 3829003132 ENCODE Processing Pipeline b7d19b2d2790c1f5a3025f9b682dbe4f https://www.encodeproject.org/files/ENCFF773HIM/@@download/ENCFF773HIM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF257GMX bam alignments ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 76 ENCFF268HPC, ENCFF499UAP, ENCFF807MUK 4030094729 ENCODE Processing Pipeline f755715de2554f37d40d4a04169e2afa https://www.encodeproject.org/files/ENCFF257GMX/@@download/ENCFF257GMX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF013TMF bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF872IMK 519299257 ENCODE Processing Pipeline fbbeece12e4de0d43bf4940523c8e4ad https://www.encodeproject.org/files/ENCFF013TMF/@@download/ENCFF013TMF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF968IOT bam alignments ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF080YDK, ENCFF640TPX, ENCFF807MUK 529841452 ENCODE Processing Pipeline 1a29f71c22660c335f34180e4bbdd6da https://www.encodeproject.org/files/ENCFF968IOT/@@download/ENCFF968IOT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF643GJU bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 36 ENCFF001YXJ, ENCFF807MUK 826898891 ENCODE Processing Pipeline ad84cdff685e1d5ba02899863cc307bf https://www.encodeproject.org/files/ENCFF643GJU/@@download/ENCFF643GJU.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF241DWU bam alignments ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 36 ENCFF001YXI, ENCFF807MUK 904218958 ENCODE Processing Pipeline 111f1e229e926a53604d5b1c997db660 https://www.encodeproject.org/files/ENCFF241DWU/@@download/ENCFF241DWU.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF050MYB bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF409HCF, ENCFF435DON, ENCFF807MUK 4421316995 ENCODE Processing Pipeline b0b28670319486c7396e5a0785af4c7b https://www.encodeproject.org/files/ENCFF050MYB/@@download/ENCFF050MYB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF008HXJ bam alignments ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF495GCB, ENCFF794VUU, ENCFF807MUK 5257371334 ENCODE Processing Pipeline 0265afbb382832c216bb9e4e7790e276 https://www.encodeproject.org/files/ENCFF008HXJ/@@download/ENCFF008HXJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF431ABA bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 40 ENCFF807MUK, ENCFF891VEX 473462771 ENCODE Processing Pipeline 70a2031dd1d76a5e789c9ff7786321f0 https://www.encodeproject.org/files/ENCFF431ABA/@@download/ENCFF431ABA.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF836GWP bam alignments ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 40 ENCFF354BZE, ENCFF807MUK, ENCFF870TNG 556365235 ENCODE Processing Pipeline 85f7199386dca476d701e10372c18941 https://www.encodeproject.org/files/ENCFF836GWP/@@download/ENCFF836GWP.bam hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF767TZS bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 100 ENCFF347VNR, ENCFF756MPL, ENCFF807MUK 4874021482 ENCODE Processing Pipeline 72f070a4c5927a5a251df263cc4aa6ce https://www.encodeproject.org/files/ENCFF767TZS/@@download/ENCFF767TZS.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF011MCR bam alignments ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 100 ENCFF139CLF, ENCFF807MUK, ENCFF945QMW 5428997410 ENCODE Processing Pipeline b97fed0de7f8a91458e40d253bd4a82d https://www.encodeproject.org/files/ENCFF011MCR/@@download/ENCFF011MCR.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF759DNX bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 40 ENCFF807MUK, ENCFF840WPW, ENCFF957HCW 545728639 ENCODE Processing Pipeline a641b96bfc4b204da0e84a2f79da98d8 https://www.encodeproject.org/files/ENCFF759DNX/@@download/ENCFF759DNX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF019SDP bam alignments ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 40 ENCFF103IDD, ENCFF530XYO, ENCFF807MUK 580573981 ENCODE Processing Pipeline 1ae17c4dc45afc969be64738b1d9be00 https://www.encodeproject.org/files/ENCFF019SDP/@@download/ENCFF019SDP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF355RGO bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEX, ENCFF807MUK 830360165 ENCODE Processing Pipeline 9585cb1ef9f7ecc6e3cd52706bfbb946 https://www.encodeproject.org/files/ENCFF355RGO/@@download/ENCFF355RGO.bam hg19 released low read length, borderline replicate concordance ENCFF136XHP bam alignments ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEY, ENCFF807MUK 951731022 ENCODE Processing Pipeline e1a5dc84147aeef7d01f31849fdf3e5a https://www.encodeproject.org/files/ENCFF136XHP/@@download/ENCFF136XHP.bam hg19 released low read length, borderline replicate concordance ENCFF059GQB bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 4 100 ENCFF746FPW, ENCFF807MUK, ENCFF822RJX 5266992966 ENCODE Processing Pipeline e00c99c00ef07247dfcbb7c56b8bdbd2 https://www.encodeproject.org/files/ENCFF059GQB/@@download/ENCFF059GQB.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF443ESH bam alignments ENCSR950NAZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens LCORL-human DNA False 2017-07-28 ENCODE 3 100 ENCFF089HKF, ENCFF405NMN, ENCFF807MUK 5707697833 ENCODE Processing Pipeline a961cc4abd2245d7653a60923e949d21 https://www.encodeproject.org/files/ENCFF443ESH/@@download/ENCFF443ESH.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF911ZWN bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 76 ENCFF567HEJ, ENCFF807MUK 602796725 ENCODE Processing Pipeline 7606738becb3f0503cd894e6d5a4aea9 https://www.encodeproject.org/files/ENCFF911ZWN/@@download/ENCFF911ZWN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF659TLW bam alignments ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 76 ENCFF137ISZ, ENCFF807MUK 678460790 ENCODE Processing Pipeline 9b1a8d1b1855ce1bf7f09b675572d3c5 https://www.encodeproject.org/files/ENCFF659TLW/@@download/ENCFF659TLW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF986RIG bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 100 ENCFF156KWQ, ENCFF385BNN, ENCFF807MUK 3193155806 ENCODE Processing Pipeline 062909f89701baeddaa3e727bb4d0be8 https://www.encodeproject.org/files/ENCFF986RIG/@@download/ENCFF986RIG.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF638SXI bam alignments ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 100 ENCFF009PBB, ENCFF713GZG, ENCFF807MUK 3358236632 ENCODE Processing Pipeline 9a6e64e13e728fd1e3392c30748bd165 https://www.encodeproject.org/files/ENCFF638SXI/@@download/ENCFF638SXI.bam hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF304KBG bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF305TCY, ENCFF588QLY, ENCFF807MUK 5228054786 ENCODE Processing Pipeline 7fc3402df336099799864bd9bc63374d https://www.encodeproject.org/files/ENCFF304KBG/@@download/ENCFF304KBG.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF851EXP bam alignments ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF113SKG, ENCFF151IBJ, ENCFF807MUK 6699765013 ENCODE Processing Pipeline cf8c63286e218991f45c1f89fe6a5228 https://www.encodeproject.org/files/ENCFF851EXP/@@download/ENCFF851EXP.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF796HOG bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DOR, ENCFF002EIJ, ENCFF807MUK 5737596169 ENCODE Processing Pipeline 231e80e7db419207a15df492e565caae https://www.encodeproject.org/files/ENCFF796HOG/@@download/ENCFF796HOG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF838YGO bam alignments ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOV, ENCFF002DTY, ENCFF807MUK 3973743130 ENCODE Processing Pipeline 0915bd4befaccde6935d0184f603492e https://www.encodeproject.org/files/ENCFF838YGO/@@download/ENCFF838YGO.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF528VXT bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 100 ENCFF182MTO, ENCFF807MUK, ENCFF949NMY 4147694795 ENCODE Processing Pipeline 4c6f735db482b3dd93d76883912b96d4 https://www.encodeproject.org/files/ENCFF528VXT/@@download/ENCFF528VXT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF023ADT bam alignments ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 4 101 ENCFF656SJN, ENCFF807MUK, ENCFF871MFF 3472279666 ENCODE Processing Pipeline f6a180acdbe4f0ee94d79b99c0b130c5 https://www.encodeproject.org/files/ENCFF023ADT/@@download/ENCFF023ADT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF180WYS bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 40 ENCFF752TPO, ENCFF800WHJ, ENCFF807MUK 607333013 ENCODE Processing Pipeline 97c7386fb6c8aea10907d8d8ac1e44dd https://www.encodeproject.org/files/ENCFF180WYS/@@download/ENCFF180WYS.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF214QGI bam alignments ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 40 ENCFF079IZF, ENCFF562ZMN, ENCFF807MUK 666709848 ENCODE Processing Pipeline b937bc05097341abb01e5c83960e4464 https://www.encodeproject.org/files/ENCFF214QGI/@@download/ENCFF214QGI.bam hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF218HKO bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 40 ENCFF293GKY, ENCFF306RZC, ENCFF807MUK 549407225 ENCODE Processing Pipeline 2ab4f4c3ccbc985a21ce85e1af2ccabb https://www.encodeproject.org/files/ENCFF218HKO/@@download/ENCFF218HKO.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF655VZE bam alignments ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 40 ENCFF108VEJ, ENCFF769MBT, ENCFF807MUK 517322460 ENCODE Processing Pipeline 022f9bc4b7af69715047acec75e634f0 https://www.encodeproject.org/files/ENCFF655VZE/@@download/ENCFF655VZE.bam hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF217RCW bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXI, ENCFF807MUK 370623871 ENCODE Processing Pipeline 891a0c483edbd41e16d81a2c986f2ceb https://www.encodeproject.org/files/ENCFF217RCW/@@download/ENCFF217RCW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF004OMB bam alignments ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXJ, ENCFF807MUK 454961588 ENCODE Processing Pipeline 9267613d3e949981ea290686dc91060c https://www.encodeproject.org/files/ENCFF004OMB/@@download/ENCFF004OMB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF730MQF bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 36 ENCFF508FCI, ENCFF807MUK 919358687 ENCODE Processing Pipeline a3ac9e67a2e01c1806a24b59a28ac97e https://www.encodeproject.org/files/ENCFF730MQF/@@download/ENCFF730MQF.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF467JND bam alignments ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 36 ENCFF345KQX, ENCFF807MUK 1052846717 ENCODE Processing Pipeline daf022eeaefeeef1407bc76ba4ee4dea https://www.encodeproject.org/files/ENCFF467JND/@@download/ENCFF467JND.bam hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF641XRH bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF229WFY, ENCFF432ZKW, ENCFF807MUK 6204396797 ENCODE Processing Pipeline e7b0abf46050a069601c4d3648732cfa https://www.encodeproject.org/files/ENCFF641XRH/@@download/ENCFF641XRH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF555DYC bam alignments ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF229VLS, ENCFF647FLX, ENCFF807MUK 5036887195 ENCODE Processing Pipeline 3f8a5339b21f56f0e1b8ad72355084d3 https://www.encodeproject.org/files/ENCFF555DYC/@@download/ENCFF555DYC.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF409MLU bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 100 ENCFF373VCW, ENCFF489ABL, ENCFF807MUK 4868673905 ENCODE Processing Pipeline a1248edfe9d178f75a3f2b6ee82eddcd https://www.encodeproject.org/files/ENCFF409MLU/@@download/ENCFF409MLU.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF863CKR bam alignments ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 3 100 ENCFF807MUK, ENCFF884TDT, ENCFF961XAS 6231348392 ENCODE Processing Pipeline 6ad96b8648ef9952860c859a37bccd3f https://www.encodeproject.org/files/ENCFF863CKR/@@download/ENCFF863CKR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF138BUP bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EHZ, ENCFF002EIE, ENCFF807MUK 5948103223 ENCODE Processing Pipeline 4c62fa5ba6fd1e83cd03dad9acecfe34 https://www.encodeproject.org/files/ENCFF138BUP/@@download/ENCFF138BUP.bam hg19 released mild to moderate bottlenecking ENCFF046BMR bam alignments ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DOU, ENCFF002EHY, ENCFF807MUK 6225309619 ENCODE Processing Pipeline 43c7d8bfabb953bec0be617cb8c1b2af https://www.encodeproject.org/files/ENCFF046BMR/@@download/ENCFF046BMR.bam hg19 released mild to moderate bottlenecking ENCFF225FNQ bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF138BLI, ENCFF807MUK, ENCFF866JOT 3738465864 ENCODE Processing Pipeline 6d50dbe56ab8f13c0195e385b7f2ef58 https://www.encodeproject.org/files/ENCFF225FNQ/@@download/ENCFF225FNQ.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF095GKP bam alignments ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF367FUJ, ENCFF807MUK, ENCFF863JNZ 3679269961 ENCODE Processing Pipeline accc8bed08877240fe8448e86d853e78 https://www.encodeproject.org/files/ENCFF095GKP/@@download/ENCFF095GKP.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF946OHC bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 50 ENCFF463YWP, ENCFF807MUK 1560076585 ENCODE Processing Pipeline fbc4716f63bde1393de28cb4330a051f https://www.encodeproject.org/files/ENCFF946OHC/@@download/ENCFF946OHC.bam hg19 released low read depth, missing genetic modification characterization ENCFF873PTI bam alignments ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 3 50 ENCFF198ANV, ENCFF807MUK 905670424 ENCODE Processing Pipeline 8a0c662a10848120be38bf6e578eada3 https://www.encodeproject.org/files/ENCFF873PTI/@@download/ENCFF873PTI.bam hg19 released low read depth, missing genetic modification characterization ENCFF356LRY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 50 ENCFF076JZZ, ENCFF717YOH, ENCFF807MUK 1322244002 ENCODE Processing Pipeline b756590c127e1c790ba9201e2e4f294a https://www.encodeproject.org/files/ENCFF356LRY/@@download/ENCFF356LRY.bam hg19 released missing genetic modification characterization ENCFF284BJY bam alignments ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 50 ENCFF019ZET, ENCFF748PBU, ENCFF807MUK 934467817 ENCODE Processing Pipeline 05cbf4958b1a804f78bdcf74bb33d070 https://www.encodeproject.org/files/ENCFF284BJY/@@download/ENCFF284BJY.bam hg19 released missing genetic modification characterization ENCFF600JYB bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 100 ENCFF700HES, ENCFF766JQJ, ENCFF807MUK 4326883005 ENCODE Processing Pipeline de16793e05358b5d73382c39a1f8a386 https://www.encodeproject.org/files/ENCFF600JYB/@@download/ENCFF600JYB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF257CJR bam alignments ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 100 ENCFF655ZKU, ENCFF807MUK, ENCFF998ZXC 5457190557 ENCODE Processing Pipeline 022a95b4408885460df1fc62289c9712 https://www.encodeproject.org/files/ENCFF257CJR/@@download/ENCFF257CJR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF464JHD bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF147LKM, ENCFF319KBV, ENCFF807MUK 4591302109 ENCODE Processing Pipeline 3a3acaf17fe8727438f5cd2775691562 https://www.encodeproject.org/files/ENCFF464JHD/@@download/ENCFF464JHD.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF010NVQ bam alignments ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF282WYC, ENCFF807MUK, ENCFF945NKO 5485965312 ENCODE Processing Pipeline 59b27d0b13b51f63c32b47c52bd384e0 https://www.encodeproject.org/files/ENCFF010NVQ/@@download/ENCFF010NVQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF286VPW bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF468WIR, ENCFF593YWJ, ENCFF807MUK 3466226393 ENCODE Processing Pipeline 1e879c30d072de86be22d0f8b71f9fa2 https://www.encodeproject.org/files/ENCFF286VPW/@@download/ENCFF286VPW.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF514JGR bam alignments ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 3 101 ENCFF377KMZ, ENCFF608LSC, ENCFF807MUK 4723963490 ENCODE Processing Pipeline bb3a73a9e3a0cbed5b5f2474127efc97 https://www.encodeproject.org/files/ENCFF514JGR/@@download/ENCFF514JGR.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF824EPV bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF193OEU, ENCFF314RZT, ENCFF807MUK 3817483428 ENCODE Processing Pipeline dc9dc8c1279a617a5dfe99f31fb5a72a https://www.encodeproject.org/files/ENCFF824EPV/@@download/ENCFF824EPV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF340ZCE bam alignments ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF348DMK, ENCFF508MSA, ENCFF807MUK 3981093645 ENCODE Processing Pipeline 71b4d554afe17b7f1c0dcb38e5bf6811 https://www.encodeproject.org/files/ENCFF340ZCE/@@download/ENCFF340ZCE.bam hg19 released missing genetic modification characterization missing control alignments ENCFF949FMK bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF752WRF, ENCFF761OSS, ENCFF807MUK 3780307148 ENCODE Processing Pipeline 0f8d3fa5769f1bf2118efc819984427e https://www.encodeproject.org/files/ENCFF949FMK/@@download/ENCFF949FMK.bam hg19 released experiment not submitted to GEO ENCFF468MXQ bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 3 101 ENCFF412VSI, ENCFF684YTI, ENCFF807MUK 6528672768 ENCODE Processing Pipeline d5d92b6829b1027cc521557a5de9462d https://www.encodeproject.org/files/ENCFF468MXQ/@@download/ENCFF468MXQ.bam hg19 released experiment not submitted to GEO ENCFF098RVJ bam alignments ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 100 ENCFF752WRF, ENCFF761OSS, ENCFF807MUK 3780307176 ENCODE Processing Pipeline b2fa64dc8e9179e757bd17c0d3997e39 https://www.encodeproject.org/files/ENCFF098RVJ/@@download/ENCFF098RVJ.bam hg19 released experiment not submitted to GEO ENCFF297BVZ bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF519KJL, ENCFF610VOU, ENCFF807MUK 4033600948 ENCODE Processing Pipeline a9ec52f28e8ae5d0c74b371417c604b9 https://www.encodeproject.org/files/ENCFF297BVZ/@@download/ENCFF297BVZ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF864CXQ bam alignments ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF213PFC, ENCFF253DEI, ENCFF807MUK 4343372968 ENCODE Processing Pipeline 97b9f327c9df1e9f6481ba73e3d51509 https://www.encodeproject.org/files/ENCFF864CXQ/@@download/ENCFF864CXQ.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF640ZFH bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 100 ENCFF551RMT, ENCFF807MUK, ENCFF881YFO 3018905780 ENCODE Processing Pipeline c4173ed7bfe1d56d8f90e32d3850a69e https://www.encodeproject.org/files/ENCFF640ZFH/@@download/ENCFF640ZFH.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF921QCO bam alignments ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 100 ENCFF315WXD, ENCFF807MUK, ENCFF849OLW 2067515529 ENCODE Processing Pipeline 77f9d4cb0733a81085f625135a384d33 https://www.encodeproject.org/files/ENCFF921QCO/@@download/ENCFF921QCO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF931MGR bam alignments ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF433MXK, ENCFF807MUK 914824159 ENCODE Processing Pipeline 702c49382d21e87f0cf0605015dcae48 https://www.encodeproject.org/files/ENCFF931MGR/@@download/ENCFF931MGR.bam hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF966KGE bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 100 ENCFF272CZX, ENCFF738QTE, ENCFF807MUK 3673118268 ENCODE Processing Pipeline 35058e1673487dc9115e49dda3fd39b1 https://www.encodeproject.org/files/ENCFF966KGE/@@download/ENCFF966KGE.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF606MZP bam alignments ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 100 ENCFF152QAM, ENCFF251YCF, ENCFF807MUK 3554519636 ENCODE Processing Pipeline 0132486641e0cec2bac7abec18093874 https://www.encodeproject.org/files/ENCFF606MZP/@@download/ENCFF606MZP.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF707OMI bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF176QOJ, ENCFF677QBQ, ENCFF807MUK 3550287306 ENCODE Processing Pipeline 948fb7a57b801714a2632faf8aa9f731 https://www.encodeproject.org/files/ENCFF707OMI/@@download/ENCFF707OMI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF512NLI bam alignments ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF198ZVP, ENCFF436WRK, ENCFF807MUK 3997507732 ENCODE Processing Pipeline e3bbce0bed4ee8dd66bb57be3f1a2fdc https://www.encodeproject.org/files/ENCFF512NLI/@@download/ENCFF512NLI.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF537OYZ bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 100 ENCFF389LWM, ENCFF807MUK, ENCFF878ZAA 3546713231 ENCODE Processing Pipeline 95dc36e9e0006d63fc331eec778476d6 https://www.encodeproject.org/files/ENCFF537OYZ/@@download/ENCFF537OYZ.bam hg19 released low read depth experiment not submitted to GEO ENCFF592CXW bam alignments ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 3 101 ENCFF273PTZ, ENCFF745JUW, ENCFF807MUK 6171928984 ENCODE Processing Pipeline b70d001a74e212ef43db837140333dee https://www.encodeproject.org/files/ENCFF592CXW/@@download/ENCFF592CXW.bam hg19 released low read depth experiment not submitted to GEO ENCFF640FIB bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF233EXE, ENCFF708EDK, ENCFF807MUK 3654698745 ENCODE Processing Pipeline cfc89bfa48484bd2076697738ce75e97 https://www.encodeproject.org/files/ENCFF640FIB/@@download/ENCFF640FIB.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF972MSK bam alignments ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF051EDJ, ENCFF807MUK, ENCFF849GAI 5301139338 ENCODE Processing Pipeline 04183fe8d8f86a1160ecd3d14fc8933f https://www.encodeproject.org/files/ENCFF972MSK/@@download/ENCFF972MSK.bam hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF884CLL bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 100 ENCFF299PPE, ENCFF388IIQ, ENCFF807MUK 3554288740 ENCODE Processing Pipeline a45ce5eeb67338aa6ad3c8f29349bbf8 https://www.encodeproject.org/files/ENCFF884CLL/@@download/ENCFF884CLL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF958YKJ bam alignments ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 100 ENCFF064JDQ, ENCFF807MUK, ENCFF964JRV 3738783733 ENCODE Processing Pipeline 36c76c36ee6e4831aff8ec7fa29986a6 https://www.encodeproject.org/files/ENCFF958YKJ/@@download/ENCFF958YKJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF341NRI bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 36 ENCFF489BCK, ENCFF807MUK 798394873 ENCODE Processing Pipeline 297179566c02b82ef7a25893fd80cdf0 https://www.encodeproject.org/files/ENCFF341NRI/@@download/ENCFF341NRI.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF977OUD bam alignments ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 36 ENCFF171CHB, ENCFF367CZA, ENCFF389MUN, ENCFF512JLH, ENCFF807MUK 1859144067 ENCODE Processing Pipeline 4d21f5a7cb47c8ddeab27dae2c0676bb https://www.encodeproject.org/files/ENCFF977OUD/@@download/ENCFF977OUD.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF296AFI bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF093AOC, ENCFF146YVN, ENCFF807MUK 4693726598 ENCODE Processing Pipeline 5c8f425853f8de148aa150d0dcf34be3 https://www.encodeproject.org/files/ENCFF296AFI/@@download/ENCFF296AFI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF137ZVN bam alignments ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF360SUA, ENCFF807MUK, ENCFF899ZUF 4920754353 ENCODE Processing Pipeline d7f56bf597190854cc5083bd9593b8c2 https://www.encodeproject.org/files/ENCFF137ZVN/@@download/ENCFF137ZVN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF518YKF bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 101 ENCFF240PRL, ENCFF665UFI, ENCFF807MUK 4792166661 ENCODE Processing Pipeline 94977639d6b9572a016bfb24217d53e7 https://www.encodeproject.org/files/ENCFF518YKF/@@download/ENCFF518YKF.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF036FAR bam alignments ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 101 ENCFF573IJP, ENCFF800JZM, ENCFF807MUK 5452212618 ENCODE Processing Pipeline c0fd9b389ea07705fd340826b7d9411e https://www.encodeproject.org/files/ENCFF036FAR/@@download/ENCFF036FAR.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF201XXY bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF354SEG, ENCFF807MUK, ENCFF841UXT 2877654363 ENCODE Processing Pipeline 2efbae672aadcdccc4d6f06bc7642e18 https://www.encodeproject.org/files/ENCFF201XXY/@@download/ENCFF201XXY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF182IWX bam alignments ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF226SDV, ENCFF693QBS, ENCFF807MUK 2676130725 ENCODE Processing Pipeline f0d88e705c232f0e8981baaff94507a6 https://www.encodeproject.org/files/ENCFF182IWX/@@download/ENCFF182IWX.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF631GFV bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF807MUK, ENCFF916UAH, ENCFF988TNQ 5107308595 ENCODE Processing Pipeline a0b9381e29bcd0df6aa281ae66e3dabb https://www.encodeproject.org/files/ENCFF631GFV/@@download/ENCFF631GFV.bam hg19 released missing genetic modification characterization missing control alignments ENCFF305MAN bam alignments ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF017EAR, ENCFF795EIH, ENCFF807MUK 5653738763 ENCODE Processing Pipeline 8449994f4e27151ed2b60e6fab576486 https://www.encodeproject.org/files/ENCFF305MAN/@@download/ENCFF305MAN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF360QES bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 100 ENCFF640CBP, ENCFF807MUK, ENCFF960TNP 4506516425 ENCODE Processing Pipeline da6b65a21e1f899cc48bf9bf8cf8390d https://www.encodeproject.org/files/ENCFF360QES/@@download/ENCFF360QES.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF769NOS bam alignments ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 3 100 ENCFF246DIP, ENCFF616WSS, ENCFF807MUK 5613697645 ENCODE Processing Pipeline 4f839c5cb982c5a4d863e574d8a309eb https://www.encodeproject.org/files/ENCFF769NOS/@@download/ENCFF769NOS.bam hg19 released mild to moderate bottlenecking mismatched file status ENCFF093DMB bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF255DCC, ENCFF651FCK, ENCFF807MUK 3552254533 ENCODE Processing Pipeline db647d8d0112e75a8f0a5d05b7eb351b https://www.encodeproject.org/files/ENCFF093DMB/@@download/ENCFF093DMB.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF236UXG bam alignments ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF460ZPX, ENCFF688OBA, ENCFF807MUK 4731796382 ENCODE Processing Pipeline b16a5fdbfac751ec37b655304028eca3 https://www.encodeproject.org/files/ENCFF236UXG/@@download/ENCFF236UXG.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF422DHE bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 36 ENCFF002EVU, ENCFF807MUK 426019463 ENCODE Processing Pipeline ea85d342e759492cfd7714a1ff8e5a31 https://www.encodeproject.org/files/ENCFF422DHE/@@download/ENCFF422DHE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF505MRY bam alignments ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 36 ENCFF002EVT, ENCFF807MUK 804457823 ENCODE Processing Pipeline d30e42aa59c62f892058a7e70c2949b4 https://www.encodeproject.org/files/ENCFF505MRY/@@download/ENCFF505MRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF335UKS bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QLT, ENCFF807MUK 760013781 ENCODE Processing Pipeline f0d969e8f574012e6fb4afa6da702e7b https://www.encodeproject.org/files/ENCFF335UKS/@@download/ENCFF335UKS.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF754DME bam alignments ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QLW, ENCFF807MUK 1276541128 ENCODE Processing Pipeline 84826ea47b7d83ca8e1da1915c50ef73 https://www.encodeproject.org/files/ENCFF754DME/@@download/ENCFF754DME.bam hg19 released mild to moderate bottlenecking, low read depth ENCFF513QSD bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 76 ENCFF807MUK, ENCFF892UWM 1802999774 ENCODE Processing Pipeline 5d95e1cbe2124ad26ce64b076a1477c8 https://www.encodeproject.org/files/ENCFF513QSD/@@download/ENCFF513QSD.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF725YPX bam alignments ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 76 ENCFF190QDZ, ENCFF807MUK 3105739134 ENCODE Processing Pipeline 50497daaabe7a01cf99088d27d639ad8 https://www.encodeproject.org/files/ENCFF725YPX/@@download/ENCFF725YPX.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF206ISZ bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 36 ENCFF002AUR, ENCFF263HKF, ENCFF320OAN, ENCFF807MUK 1130259670 ENCODE Processing Pipeline 5fa5b348caca47c295577615a10ebfc3 https://www.encodeproject.org/files/ENCFF206ISZ/@@download/ENCFF206ISZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF852USD bam alignments ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 36 ENCFF752EVM, ENCFF807MUK 944553528 ENCODE Processing Pipeline 0b1adf27cd74b72a6743426c6565c225 https://www.encodeproject.org/files/ENCFF852USD/@@download/ENCFF852USD.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF295KFF bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEP, ENCFF807MUK 719002595 ENCODE Processing Pipeline cee112f369e8035b3c5b052084a40008 https://www.encodeproject.org/files/ENCFF295KFF/@@download/ENCFF295KFF.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF592VTW bam alignments ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEL, ENCFF807MUK 408815981 ENCODE Processing Pipeline a5054411d3fb3ae2ffb8ff6563cd00ae https://www.encodeproject.org/files/ENCFF592VTW/@@download/ENCFF592VTW.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF833DBR bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 36 ENCFF002EWU, ENCFF807MUK 663405732 ENCODE Processing Pipeline 89b4f9ecac3017fb913b29765e8370ef https://www.encodeproject.org/files/ENCFF833DBR/@@download/ENCFF833DBR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF508MJP bam alignments ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 36 ENCFF002EWK, ENCFF807MUK 659820289 ENCODE Processing Pipeline db2ca2eeb841c2ec5565a743ec168037 https://www.encodeproject.org/files/ENCFF508MJP/@@download/ENCFF508MJP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF204XOT bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 100 ENCFF277XRY, ENCFF807MUK, ENCFF931OID 6134521386 ENCODE Processing Pipeline 0fb8e7f4697dae2b1ba826cc2a82f1e1 https://www.encodeproject.org/files/ENCFF204XOT/@@download/ENCFF204XOT.bam hg19 released borderline replicate concordance ENCFF477KIN bam alignments ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 100 ENCFF398BFN, ENCFF590PTX, ENCFF807MUK 5879060198 ENCODE Processing Pipeline 1b007f9a796e3624e28fcea8ab230ffd https://www.encodeproject.org/files/ENCFF477KIN/@@download/ENCFF477KIN.bam hg19 released borderline replicate concordance ENCFF938VGO bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF416FTW, ENCFF608PZD, ENCFF807MUK 3517400022 ENCODE Processing Pipeline 24a0b3c07458850c7c0502e943985eaf https://www.encodeproject.org/files/ENCFF938VGO/@@download/ENCFF938VGO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF607AVR bam alignments ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF070SVK, ENCFF807MUK, ENCFF917ZPE 5301865862 ENCODE Processing Pipeline 9b20f64ffd7127ec76cee044d52c8625 https://www.encodeproject.org/files/ENCFF607AVR/@@download/ENCFF607AVR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF907MBX bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 36 ENCFF021NRK, ENCFF807MUK 811402230 ENCODE Processing Pipeline 96ab669dba0c48be5f9373d1474048aa https://www.encodeproject.org/files/ENCFF907MBX/@@download/ENCFF907MBX.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF431XOH bam alignments ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 36 ENCFF026SYW, ENCFF807MUK 987877967 ENCODE Processing Pipeline 78194c9fdae492d664a7dd69975d4970 https://www.encodeproject.org/files/ENCFF431XOH/@@download/ENCFF431XOH.bam hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF293RDA bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF364UFN, ENCFF601NHF, ENCFF807MUK 3535584200 ENCODE Processing Pipeline 4c8a2f3d2af236e07fc9b3de5ab100ad https://www.encodeproject.org/files/ENCFF293RDA/@@download/ENCFF293RDA.bam hg19 released low read depth ENCFF451IIX bam alignments ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 100 ENCFF541INS, ENCFF806WBE, ENCFF807MUK 3190805931 ENCODE Processing Pipeline 62cb1df561a6d7b6d8041cd85f32f5af https://www.encodeproject.org/files/ENCFF451IIX/@@download/ENCFF451IIX.bam hg19 released low read depth ENCFF140LQJ bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF117CBN, ENCFF807MUK, ENCFF881GTO 1861509883 ENCODE Processing Pipeline 75fc991b0867705b81c53a4d335cef23 https://www.encodeproject.org/files/ENCFF140LQJ/@@download/ENCFF140LQJ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF591HDZ bam alignments ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF321KTO, ENCFF668FXA, ENCFF807MUK 1878627508 ENCODE Processing Pipeline aed1266cab03e89f392b62bd193f667b https://www.encodeproject.org/files/ENCFF591HDZ/@@download/ENCFF591HDZ.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF366BIR bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 40 ENCFF807MUK, ENCFF985NRQ 1118005485 ENCODE Processing Pipeline 5380a250c74f1b65399025407b889d25 https://www.encodeproject.org/files/ENCFF366BIR/@@download/ENCFF366BIR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF431QLB bam alignments ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 40 ENCFF587OZE, ENCFF807MUK, ENCFF840RGL, ENCFF924MON 1797912386 ENCODE Processing Pipeline d7b35373ff9bf96041df45825408e907 https://www.encodeproject.org/files/ENCFF431QLB/@@download/ENCFF431QLB.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF998OHX bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF132YCG, ENCFF707MCD, ENCFF807MUK 4267937400 ENCODE Processing Pipeline c35496455863d49a4c94b2b30fed589b https://www.encodeproject.org/files/ENCFF998OHX/@@download/ENCFF998OHX.bam hg19 released missing genetic modification characterization missing control alignments ENCFF391ZJP bam alignments ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF022TFF, ENCFF807MUK, ENCFF960UFT 4065504625 ENCODE Processing Pipeline 514316c90921ecc162883bab5544e306 https://www.encodeproject.org/files/ENCFF391ZJP/@@download/ENCFF391ZJP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF560YXG bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 100 ENCFF237IMG, ENCFF571ZGV, ENCFF807MUK 7631797913 ENCODE Processing Pipeline 558dc7d851dcbd938462032e426f059f https://www.encodeproject.org/files/ENCFF560YXG/@@download/ENCFF560YXG.bam hg19 released ENCFF404RJD bam alignments ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 100 ENCFF490PRK, ENCFF807MUK, ENCFF871PJG 8107432188 ENCODE Processing Pipeline 0423447a257d94ab0c5c5f49db10f60a https://www.encodeproject.org/files/ENCFF404RJD/@@download/ENCFF404RJD.bam hg19 released ENCFF602LPS bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF103HSX, ENCFF143DZT, ENCFF807MUK 2839500040 ENCODE Processing Pipeline a3f0a3ed60ae3763d0c36bc05094df9c https://www.encodeproject.org/files/ENCFF602LPS/@@download/ENCFF602LPS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF548EUS bam alignments ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF083CVO, ENCFF163PCX, ENCFF807MUK 3661761079 ENCODE Processing Pipeline 9d6c7a76e7e09c75c00f9ca4fcd9a853 https://www.encodeproject.org/files/ENCFF548EUS/@@download/ENCFF548EUS.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF343RSJ bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF253QUP, ENCFF743IFE, ENCFF807MUK 4603837806 ENCODE Processing Pipeline b376faa5149e0a9b4eb952ebdf819881 https://www.encodeproject.org/files/ENCFF343RSJ/@@download/ENCFF343RSJ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF923TZZ bam alignments ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF115RSO, ENCFF146VSJ, ENCFF807MUK 4200618100 ENCODE Processing Pipeline cd9ff0b0308591c86d9c1ecd55150e05 https://www.encodeproject.org/files/ENCFF923TZZ/@@download/ENCFF923TZZ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF053WUE bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 101 ENCFF330LTF, ENCFF453SOG, ENCFF807MUK 4942991053 ENCODE Processing Pipeline 4f8953b61388ceb95201691ad199b34b https://www.encodeproject.org/files/ENCFF053WUE/@@download/ENCFF053WUE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF151XJE bam alignments ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 101 ENCFF185TWT, ENCFF696BLE, ENCFF807MUK 4613629853 ENCODE Processing Pipeline bc4d317191306b7e9ce2f46f928a44ef https://www.encodeproject.org/files/ENCFF151XJE/@@download/ENCFF151XJE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF222WFW bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 100 ENCFF671RFK, ENCFF801JGP, ENCFF807MUK 2273379195 ENCODE Processing Pipeline a164556d66313afe9558557256312f12 https://www.encodeproject.org/files/ENCFF222WFW/@@download/ENCFF222WFW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF929KZG bam alignments ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 100 ENCFF088PAW, ENCFF418JIM, ENCFF807MUK 4252088580 ENCODE Processing Pipeline 4a6d5bf7e6da6b12540cac2188786430 https://www.encodeproject.org/files/ENCFF929KZG/@@download/ENCFF929KZG.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF080KBG bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF413RLX, ENCFF807MUK, ENCFF940QRR 5043477594 ENCODE Processing Pipeline d32e02095b1da8ef943e128e74dc09b0 https://www.encodeproject.org/files/ENCFF080KBG/@@download/ENCFF080KBG.bam hg19 released missing genetic modification characterization missing control alignments ENCFF180OJS bam alignments ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF569ROF, ENCFF708AQI, ENCFF807MUK 6071482032 ENCODE Processing Pipeline 23878e425e357c862031567fa698dba6 https://www.encodeproject.org/files/ENCFF180OJS/@@download/ENCFF180OJS.bam hg19 released missing genetic modification characterization missing control alignments ENCFF838ZQW bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 100 ENCFF212GZO, ENCFF480SOQ, ENCFF807MUK 4712027242 ENCODE Processing Pipeline 383f7624a8ac2145bfaa68e4c50d365f https://www.encodeproject.org/files/ENCFF838ZQW/@@download/ENCFF838ZQW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF639RIW bam alignments ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 3 101 ENCFF473SFU, ENCFF713VLK, ENCFF807MUK 5639361993 ENCODE Processing Pipeline a4d6dea9056b29b877205f44f74f4ce7 https://www.encodeproject.org/files/ENCFF639RIW/@@download/ENCFF639RIW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF959KSA bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF025TUY, ENCFF708BOT, ENCFF807MUK 4651934731 ENCODE Processing Pipeline 80dbf56e81bfa8a07b70efa1345bd6a6 https://www.encodeproject.org/files/ENCFF959KSA/@@download/ENCFF959KSA.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF404VIO bam alignments ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF379KSR, ENCFF441WIT, ENCFF807MUK 4330864677 ENCODE Processing Pipeline f055d79c105759e0b19f6ead66343556 https://www.encodeproject.org/files/ENCFF404VIO/@@download/ENCFF404VIO.bam hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF746YDX bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF019KRR, ENCFF690LCG, ENCFF807MUK 6009581100 ENCODE Processing Pipeline 67554948fa0de34f25c2208e28a9be24 https://www.encodeproject.org/files/ENCFF746YDX/@@download/ENCFF746YDX.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF330CTW bam alignments ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF088UFA, ENCFF807MUK, ENCFF918XGV 6243354059 ENCODE Processing Pipeline dd6ebafcaf524cc257a5f90f95b6c985 https://www.encodeproject.org/files/ENCFF330CTW/@@download/ENCFF330CTW.bam hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF828PXU bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF104INT, ENCFF807MUK, ENCFF832UNH 2812596587 ENCODE Processing Pipeline c2445defae6d3f0a4e08eba2bf456b31 https://www.encodeproject.org/files/ENCFF828PXU/@@download/ENCFF828PXU.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF329FLI bam alignments ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF204KUD, ENCFF619CUO, ENCFF807MUK 4184929012 ENCODE Processing Pipeline 138f38e738412197dbe460dcd4aefa33 https://www.encodeproject.org/files/ENCFF329FLI/@@download/ENCFF329FLI.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF818PEY bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF413PLS, ENCFF807MUK, ENCFF972SBT 4947858633 ENCODE Processing Pipeline 2d38fba2b3dde73fa861d59a617e70d5 https://www.encodeproject.org/files/ENCFF818PEY/@@download/ENCFF818PEY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF847GYW bam alignments ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF231IQH, ENCFF807MUK, ENCFF809WZP 4858410657 ENCODE Processing Pipeline 17eb018ebb4d2cd3a9d9826ae1b1daf2 https://www.encodeproject.org/files/ENCFF847GYW/@@download/ENCFF847GYW.bam hg19 released missing genetic modification characterization missing control alignments ENCFF014SGL bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF271YPD, ENCFF456PAU, ENCFF807MUK 5171581198 ENCODE Processing Pipeline 0f84bd10c4a3cc82ba46fbd641f46ade https://www.encodeproject.org/files/ENCFF014SGL/@@download/ENCFF014SGL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF332OVN bam alignments ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF031VYK, ENCFF723NCL, ENCFF807MUK 4700745123 ENCODE Processing Pipeline e8542c35dc806823185369a1e8a8d710 https://www.encodeproject.org/files/ENCFF332OVN/@@download/ENCFF332OVN.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF231LLP bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF359NBE, ENCFF640PHT, ENCFF807MUK 4895548961 ENCODE Processing Pipeline 625c56d1760854a6955e20774b061dd4 https://www.encodeproject.org/files/ENCFF231LLP/@@download/ENCFF231LLP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF914AEL bam alignments ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF436WIC, ENCFF716DCY, ENCFF807MUK 5873393383 ENCODE Processing Pipeline 09edc17721d5016f77facd4e67e55cbf https://www.encodeproject.org/files/ENCFF914AEL/@@download/ENCFF914AEL.bam hg19 released missing genetic modification characterization missing control alignments ENCFF111WZN bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 36 ENCFF002EVM, ENCFF807MUK 604891610 ENCODE Processing Pipeline d7c1ac163f3ce5287d365b0d2803338e https://www.encodeproject.org/files/ENCFF111WZN/@@download/ENCFF111WZN.bam hg19 released low read length, low read depth duplicate lane review ENCFF677SXP bam alignments ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 36 ENCFF002EVP, ENCFF807MUK 663192682 ENCODE Processing Pipeline 526888016a16955b6edc57a37566e3c2 https://www.encodeproject.org/files/ENCFF677SXP/@@download/ENCFF677SXP.bam hg19 released low read length, low read depth duplicate lane review ENCFF416JQZ bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 100 ENCFF455ZRR, ENCFF807MUK, ENCFF899JCN 4393457590 ENCODE Processing Pipeline 79a869dd95a68c2ca52364c4ae9e7211 https://www.encodeproject.org/files/ENCFF416JQZ/@@download/ENCFF416JQZ.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF860EBI bam alignments ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 100 ENCFF222CTH, ENCFF807MUK, ENCFF908NRM 5234048696 ENCODE Processing Pipeline be1cdf6a81db41ad91317e183e278148 https://www.encodeproject.org/files/ENCFF860EBI/@@download/ENCFF860EBI.bam hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF668PAZ bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 100 ENCFF109JFR, ENCFF119WDG, ENCFF807MUK 4096265737 ENCODE Processing Pipeline 7d793e0d66148674c3ca3e2a3f33d7e4 https://www.encodeproject.org/files/ENCFF668PAZ/@@download/ENCFF668PAZ.bam hg19 released mild to moderate bottlenecking ENCFF339RIH bam alignments ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 100 ENCFF279YEI, ENCFF807MUK, ENCFF898GAP 5071968434 ENCODE Processing Pipeline 332061cc191298b71e01cb6825ce7a47 https://www.encodeproject.org/files/ENCFF339RIH/@@download/ENCFF339RIH.bam hg19 released mild to moderate bottlenecking ENCFF983AFA bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 36 ENCFF358EYL, ENCFF369UQZ, ENCFF678IIJ, ENCFF807MUK 651950218 ENCODE Processing Pipeline 3e733419fb07baab7195f9c8774b431b https://www.encodeproject.org/files/ENCFF983AFA/@@download/ENCFF983AFA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF396EHK bam alignments ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 36 ENCFF315NSQ, ENCFF358QXO, ENCFF417PYP, ENCFF807MUK 2467110254 ENCODE Processing Pipeline ff5d40f3ff8466a36407fdc6b8be640f https://www.encodeproject.org/files/ENCFF396EHK/@@download/ENCFF396EHK.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF091BWQ bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF807MUK, ENCFF858GIB, ENCFF950MHM 4462607880 ENCODE Processing Pipeline 03e4223b5b96e667fb9dca25e8777372 https://www.encodeproject.org/files/ENCFF091BWQ/@@download/ENCFF091BWQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF136WLN bam alignments ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF199YWX, ENCFF807MUK, ENCFF857ZPD 7442027124 ENCODE Processing Pipeline 75e7194e2fab591c51a8c71d0430048c https://www.encodeproject.org/files/ENCFF136WLN/@@download/ENCFF136WLN.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF753SVR bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF027IUI, ENCFF209LAN, ENCFF807MUK 4924751558 ENCODE Processing Pipeline 661cfd7fa488adb0b1761200cb375291 https://www.encodeproject.org/files/ENCFF753SVR/@@download/ENCFF753SVR.bam hg19 released missing genetic modification characterization missing control alignments ENCFF680DKU bam alignments ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF382JJC, ENCFF441XRJ, ENCFF807MUK 5016173362 ENCODE Processing Pipeline addbe4f3c2fe38ece29918865f43c355 https://www.encodeproject.org/files/ENCFF680DKU/@@download/ENCFF680DKU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF737QLL bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 100 ENCFF256BLE, ENCFF513AFY, ENCFF807MUK 3013115466 ENCODE Processing Pipeline 177612309f4c13c4f497fd2a078e8bce https://www.encodeproject.org/files/ENCFF737QLL/@@download/ENCFF737QLL.bam hg19 released low read depth, antibody characterized with exemption ENCFF606HVQ bam alignments ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 100 ENCFF112IGA, ENCFF302OWI, ENCFF807MUK 4598364230 ENCODE Processing Pipeline bb1726a42f98048a56f582105d8eee32 https://www.encodeproject.org/files/ENCFF606HVQ/@@download/ENCFF606HVQ.bam hg19 released low read depth, antibody characterized with exemption ENCFF487QNN bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 101 ENCFF060CCV, ENCFF352ZKQ, ENCFF807MUK 5055981662 ENCODE Processing Pipeline 2644de22bcae5bab1889181e60ac2c51 https://www.encodeproject.org/files/ENCFF487QNN/@@download/ENCFF487QNN.bam hg19 released missing genetic modification characterization missing control alignments ENCFF416AHQ bam alignments ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 101 ENCFF189SGX, ENCFF355BXZ, ENCFF807MUK 5888577747 ENCODE Processing Pipeline c4060d04f0aadf1d8db5cb709a662a70 https://www.encodeproject.org/files/ENCFF416AHQ/@@download/ENCFF416AHQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF481EUA bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EJZ, ENCFF002EKA, ENCFF807MUK 2903232470 ENCODE Processing Pipeline bcbde95328c05d71ce914c8ca4dbbbf0 https://www.encodeproject.org/files/ENCFF481EUA/@@download/ENCFF481EUA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF102NUJ bam alignments ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EKB, ENCFF002EKC, ENCFF807MUK 2685016742 ENCODE Processing Pipeline 2c8a8bff35f4f446ac686ed1cd6edd83 https://www.encodeproject.org/files/ENCFF102NUJ/@@download/ENCFF102NUJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF453BFT bam redacted alignments ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 36 ENCFF807MUK, ENCFF885MZT 596988417 ENCODE Processing Pipeline c85ba1c9bfcd0282b0efafdff542bc7b https://www.encodeproject.org/files/ENCFF453BFT/@@download/ENCFF453BFT.bam hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF114GGP bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002DPS, ENCFF002EGS, ENCFF807MUK 6942020510 ENCODE Processing Pipeline 07a34adbcaeb2873fdd5ec44f615f278 https://www.encodeproject.org/files/ENCFF114GGP/@@download/ENCFF114GGP.bam hg19 released ENCFF059RII bam alignments ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002DPO, ENCFF002EGK, ENCFF807MUK 4832650658 ENCODE Processing Pipeline 633358a5f8d67fb8b096041efcc78e3b https://www.encodeproject.org/files/ENCFF059RII/@@download/ENCFF059RII.bam hg19 released ENCFF181DZU bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EDY, ENCFF807MUK 1072622952 ENCODE Processing Pipeline f9012d0a422567df7f75a4bfae176852 https://www.encodeproject.org/files/ENCFF181DZU/@@download/ENCFF181DZU.bam hg19 released low read length ENCFF785DZS bam alignments ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EDW, ENCFF807MUK 931191157 ENCODE Processing Pipeline 8f0cd65687b3be591944bff93b3b448c https://www.encodeproject.org/files/ENCFF785DZS/@@download/ENCFF785DZS.bam hg19 released low read length ENCFF035OKO bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EAB, ENCFF807MUK 728740191 ENCODE Processing Pipeline c0eedd991d6737dc326b1e67258de368 https://www.encodeproject.org/files/ENCFF035OKO/@@download/ENCFF035OKO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF378MVM bam alignments ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZZ, ENCFF807MUK 532887530 ENCODE Processing Pipeline d9ad097e8f6d4c8b0d81a8d43ab48013 https://www.encodeproject.org/files/ENCFF378MVM/@@download/ENCFF378MVM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF135DLX bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 100 ENCFF807MUK, ENCFF862EVT, ENCFF917SHU 4651421090 ENCODE Processing Pipeline a772c931ec31ea9dce161dd765c10848 https://www.encodeproject.org/files/ENCFF135DLX/@@download/ENCFF135DLX.bam hg19 released ENCFF094VXQ bam alignments ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 100 ENCFF489LNL, ENCFF807MUK, ENCFF974DWD 5237817881 ENCODE Processing Pipeline 8694fce17383d09fbb5d2f7996a0dabc https://www.encodeproject.org/files/ENCFF094VXQ/@@download/ENCFF094VXQ.bam hg19 released ENCFF629LJM bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 101 ENCFF525HHM, ENCFF790RTP, ENCFF807MUK 4471484902 ENCODE Processing Pipeline f5d485c870cd6f464df02decbc745296 https://www.encodeproject.org/files/ENCFF629LJM/@@download/ENCFF629LJM.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF265DSL bam alignments ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 101 ENCFF191HHO, ENCFF701UNE, ENCFF807MUK 4578801950 ENCODE Processing Pipeline cc0dd2d505beef4cf9b8fe9d43655aa3 https://www.encodeproject.org/files/ENCFF265DSL/@@download/ENCFF265DSL.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF707EHW bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 36 ENCFF458VHP, ENCFF807MUK 703147728 ENCODE Processing Pipeline 9596037bb7e04ef32cc31b12d3a60c89 https://www.encodeproject.org/files/ENCFF707EHW/@@download/ENCFF707EHW.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF832OJP bam alignments ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 36 ENCFF807MUK, ENCFF917UJR 798988230 ENCODE Processing Pipeline 3a303a892c712511796c31d62be10c41 https://www.encodeproject.org/files/ENCFF832OJP/@@download/ENCFF832OJP.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF519ODA bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF407FUY, ENCFF807MUK, ENCFF936RHD 4584887323 ENCODE Processing Pipeline 881aa6c005ba2eb15ab8a02c2de6064b https://www.encodeproject.org/files/ENCFF519ODA/@@download/ENCFF519ODA.bam hg19 released missing genetic modification characterization missing control alignments ENCFF916SIK bam alignments ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF447WRG, ENCFF807MUK, ENCFF909UDE 4778758234 ENCODE Processing Pipeline 65c6e7938349812d8bc8a8cb6f469cc5 https://www.encodeproject.org/files/ENCFF916SIK/@@download/ENCFF916SIK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF641GTE bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 50 ENCFF712JVW, ENCFF807MUK 1256730872 ENCODE Processing Pipeline a4635287a94d67c055ac920292ab7522 https://www.encodeproject.org/files/ENCFF641GTE/@@download/ENCFF641GTE.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF361MQC bam alignments ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 50 ENCFF407SOA, ENCFF807MUK 1417944994 ENCODE Processing Pipeline dc16a25569d233535d3cd2826a7eee90 https://www.encodeproject.org/files/ENCFF361MQC/@@download/ENCFF361MQC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF115VTJ bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF183QKB, ENCFF807MUK 970730340 ENCODE Processing Pipeline f1128a5d9508a94affb8eee8d33bc7ac https://www.encodeproject.org/files/ENCFF115VTJ/@@download/ENCFF115VTJ.bam hg19 released low read depth, antibody characterized with exemption ENCFF131HAH bam alignments ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF281EIK, ENCFF807MUK 1376328635 ENCODE Processing Pipeline 7be3e1f3ec3d7673c1b8a5a150cf21d8 https://www.encodeproject.org/files/ENCFF131HAH/@@download/ENCFF131HAH.bam hg19 released low read depth, antibody characterized with exemption ENCFF252WJR bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 36 ENCFF002EEN, ENCFF807MUK 528229056 ENCODE Processing Pipeline 6730353cb78bc9568ed4cb4156f3b64e https://www.encodeproject.org/files/ENCFF252WJR/@@download/ENCFF252WJR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF032JWA bam alignments ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002EEQ, ENCFF807MUK 732122949 ENCODE Processing Pipeline b8f8aee503fd73ad8ec77495365b083d https://www.encodeproject.org/files/ENCFF032JWA/@@download/ENCFF032JWA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF024GDR bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF121UFD, ENCFF373PXQ, ENCFF807MUK 4058049109 ENCODE Processing Pipeline ccf584caa8f44b4242771586adbe16d6 https://www.encodeproject.org/files/ENCFF024GDR/@@download/ENCFF024GDR.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF224RMN bam alignments ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF276YLX, ENCFF556HOO, ENCFF807MUK 8383904294 ENCODE Processing Pipeline 2ed9e21ca7482d5eb57fc11657819e80 https://www.encodeproject.org/files/ENCFF224RMN/@@download/ENCFF224RMN.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF758FKR bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF223ZOA, ENCFF807MUK, ENCFF936JQM 5635160827 ENCODE Processing Pipeline a3bc20bada5b60fc0efed70cf8f71f66 https://www.encodeproject.org/files/ENCFF758FKR/@@download/ENCFF758FKR.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF799DEL bam alignments ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF430LVJ, ENCFF689RWF, ENCFF807MUK 10055773344 ENCODE Processing Pipeline 9a14296c1e7c1285b84f585665b99863 https://www.encodeproject.org/files/ENCFF799DEL/@@download/ENCFF799DEL.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF072HUA bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 50 ENCFF101KOG, ENCFF807MUK 1243926251 ENCODE Processing Pipeline 84cebc34c1184189a9b1cb9c45cd7844 https://www.encodeproject.org/files/ENCFF072HUA/@@download/ENCFF072HUA.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF996GBL bam alignments ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 50 ENCFF807MUK, ENCFF948IGU 1303889288 ENCODE Processing Pipeline 209f60ceaf566dd626b38d1e0ab7981c https://www.encodeproject.org/files/ENCFF996GBL/@@download/ENCFF996GBL.bam hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF440TNK bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF155JSY, ENCFF795PET, ENCFF807MUK 5689514574 ENCODE Processing Pipeline d0cd9c0eedc84a883f55ef3091812310 https://www.encodeproject.org/files/ENCFF440TNK/@@download/ENCFF440TNK.bam hg19 released missing genetic modification characterization missing control alignments ENCFF109PJP bam alignments ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF524NND, ENCFF665GYY, ENCFF807MUK 5440645946 ENCODE Processing Pipeline 19be7a4aea3a880a127d73ee41bde480 https://www.encodeproject.org/files/ENCFF109PJP/@@download/ENCFF109PJP.bam hg19 released missing genetic modification characterization missing control alignments ENCFF613ITI bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 100 ENCFF516QHN, ENCFF807MUK, ENCFF943CAF 3569550645 ENCODE Processing Pipeline 7d59da154e7bb99f3ca44464904ab67b https://www.encodeproject.org/files/ENCFF613ITI/@@download/ENCFF613ITI.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF881KLW bam alignments ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 3 101 ENCFF439UCU, ENCFF807MUK, ENCFF822VOO 3507161365 ENCODE Processing Pipeline b6c67d7e88e2b5dbf6e450033f33e30d https://www.encodeproject.org/files/ENCFF881KLW/@@download/ENCFF881KLW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF874XYT bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 100 ENCFF804SDU, ENCFF807MUK, ENCFF841EZY 4545847603 ENCODE Processing Pipeline 3f480e988222f63c4bedc1a98aeb7831 https://www.encodeproject.org/files/ENCFF874XYT/@@download/ENCFF874XYT.bam hg19 released ENCFF006NUZ bam alignments ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 100 ENCFF220OFM, ENCFF653KYN, ENCFF807MUK 5075042659 ENCODE Processing Pipeline 4fe13e909b6a390a26c756dbc2b7ef78 https://www.encodeproject.org/files/ENCFF006NUZ/@@download/ENCFF006NUZ.bam hg19 released ENCFF936RIU bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF004IXE, ENCFF488GZC, ENCFF807MUK 5855315735 ENCODE Processing Pipeline fbf07e099d54d9fb88c28f4b5c06e262 https://www.encodeproject.org/files/ENCFF936RIU/@@download/ENCFF936RIU.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF573QVR bam alignments ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF238CVL, ENCFF807MUK, ENCFF964ENU 6602304366 ENCODE Processing Pipeline 6a0bb3450d22277c119cc1e7f6248f43 https://www.encodeproject.org/files/ENCFF573QVR/@@download/ENCFF573QVR.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF404GUE bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF019YFW, ENCFF807MUK, ENCFF904VSC 3854703399 ENCODE Processing Pipeline 20666916718642ce30e407f9777cae8f https://www.encodeproject.org/files/ENCFF404GUE/@@download/ENCFF404GUE.bam hg19 released ENCFF736VZV bam alignments ENCSR449UFF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZKSCAN1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF133BYL, ENCFF173ENM, ENCFF807MUK 4855861662 ENCODE Processing Pipeline 638a3702433e03511b1b3bcaaf4b07e2 https://www.encodeproject.org/files/ENCFF736VZV/@@download/ENCFF736VZV.bam hg19 released ENCFF837GFI bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF082BKZ, ENCFF126QCL, ENCFF807MUK 3884718671 ENCODE Processing Pipeline 65f9356524b57e956927d531eb3f09bf https://www.encodeproject.org/files/ENCFF837GFI/@@download/ENCFF837GFI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF239MAH bam alignments ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 3 100 ENCFF149QCK, ENCFF191MNL, ENCFF807MUK 7365242455 ENCODE Processing Pipeline 45a382044b26c1005e702a99713d77fb https://www.encodeproject.org/files/ENCFF239MAH/@@download/ENCFF239MAH.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF902IUI bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 100 ENCFF352BSY, ENCFF354AKN, ENCFF807MUK 6516760709 ENCODE Processing Pipeline c2f78a2f2b6e4eb7c01feb62ffb65a48 https://www.encodeproject.org/files/ENCFF902IUI/@@download/ENCFF902IUI.bam hg19 released mild to moderate bottlenecking ENCFF041GWT bam alignments ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 3 100 ENCFF213VGJ, ENCFF424RZZ, ENCFF807MUK 5275540644 ENCODE Processing Pipeline 1b147679199ca78f944b62f6356d696e https://www.encodeproject.org/files/ENCFF041GWT/@@download/ENCFF041GWT.bam hg19 released mild to moderate bottlenecking ENCFF029BWR bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 100 ENCFF064WNX, ENCFF753IGR, ENCFF807MUK 6599334442 ENCODE Processing Pipeline f8d6ec8621d6a0486ae81fba0c702cfd https://www.encodeproject.org/files/ENCFF029BWR/@@download/ENCFF029BWR.bam hg19 released ENCFF244LMD bam alignments ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 100 ENCFF039DVL, ENCFF103YIS, ENCFF807MUK 6583553272 ENCODE Processing Pipeline e0b66aed38350c33b0f21da5fe0713d6 https://www.encodeproject.org/files/ENCFF244LMD/@@download/ENCFF244LMD.bam hg19 released ENCFF652ORT bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 101 ENCFF327HOL, ENCFF489SBU, ENCFF807MUK 3153565048 ENCODE Processing Pipeline f748caad54c5351d0a13c0454091ef50 https://www.encodeproject.org/files/ENCFF652ORT/@@download/ENCFF652ORT.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF171TVX bam alignments ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 101 ENCFF070RBE, ENCFF322UTY, ENCFF807MUK 3934933415 ENCODE Processing Pipeline bfe0a136e48bb7bb35c3dd20fac73ea6 https://www.encodeproject.org/files/ENCFF171TVX/@@download/ENCFF171TVX.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF720NRD bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF355VVD, ENCFF807MUK 406036861 ENCODE Processing Pipeline 8cbf7a399af737664ead695b2dfda74a https://www.encodeproject.org/files/ENCFF720NRD/@@download/ENCFF720NRD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF958KLM bam alignments ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF356RYY, ENCFF807MUK 373777524 ENCODE Processing Pipeline fdb33ce0c1a240c009150516caf595c8 https://www.encodeproject.org/files/ENCFF958KLM/@@download/ENCFF958KLM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF089CUH bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 101 ENCFF561ORG, ENCFF807MUK, ENCFF855LGC 6770351274 ENCODE Processing Pipeline 657a5e45fde6b708edbf36af23299a08 https://www.encodeproject.org/files/ENCFF089CUH/@@download/ENCFF089CUH.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF335RUN bam alignments ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 101 ENCFF158KLD, ENCFF807MUK, ENCFF933FSS 8322744723 ENCODE Processing Pipeline e72dc6fc15c5df68506ab621670d56ec https://www.encodeproject.org/files/ENCFF335RUN/@@download/ENCFF335RUN.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF607CWP bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF469HPU, ENCFF807MUK, ENCFF944NFT 2464377778 ENCODE Processing Pipeline c8c3395589f8805bad955a151358ad0c https://www.encodeproject.org/files/ENCFF607CWP/@@download/ENCFF607CWP.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF545NUA bam alignments ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF463FLS, ENCFF590EUS, ENCFF807MUK 5748090708 ENCODE Processing Pipeline f5fce8b18caf0ef1c58c8749e7c4c930 https://www.encodeproject.org/files/ENCFF545NUA/@@download/ENCFF545NUA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF950GGY bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EIN, ENCFF002EIS, ENCFF807MUK 3133213178 ENCODE Processing Pipeline 5789ae9c77f65bc6dd1e3510d0abc3cc https://www.encodeproject.org/files/ENCFF950GGY/@@download/ENCFF950GGY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF274ZBZ bam alignments ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002EIQ, ENCFF002EIT, ENCFF807MUK 3285979011 ENCODE Processing Pipeline 03f485c4b71346a05e59663038e1b86b https://www.encodeproject.org/files/ENCFF274ZBZ/@@download/ENCFF274ZBZ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF270HZT bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 50 ENCFF671BGZ, ENCFF807MUK 1747599538 ENCODE Processing Pipeline 816f9a1b387b2952975006ca0f90432e https://www.encodeproject.org/files/ENCFF270HZT/@@download/ENCFF270HZT.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF821FIW bam alignments ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 50 ENCFF164ZCN, ENCFF807MUK 1641032399 ENCODE Processing Pipeline 07f769a64523a51a2c435aa8e035c9e6 https://www.encodeproject.org/files/ENCFF821FIW/@@download/ENCFF821FIW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF000NKW bam alignments ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NLO 1644510091 Richard Myers, HAIB e1a544cdb8de8f399e05cab0157e97d2 https://www.encodeproject.org/files/ENCFF000NKW/@@download/ENCFF000NKW.bam hg19 released biological replicates with identical biosample ENCFF000NKX bam alignments ENCSR000BSQ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NLH 1461669146 Richard Myers, HAIB 2a2722274d0408e5db0e4e4d7bfd189e https://www.encodeproject.org/files/ENCFF000NKX/@@download/ENCFF000NKX.bam hg19 released biological replicates with identical biosample ENCFF000NRC bam alignments ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRK 1093244046 Richard Myers, HAIB 5dd79f7d56e7f6d1002e892c508b5558 https://www.encodeproject.org/files/ENCFF000NRC/@@download/ENCFF000NRC.bam hg19 released biological replicates with identical biosample ENCFF000NRE bam alignments ENCSR000BSY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRQ 1462535158 Richard Myers, HAIB 3e26b244d51856fb8a626f80e3dcfec1 https://www.encodeproject.org/files/ENCFF000NRE/@@download/ENCFF000NRE.bam hg19 released biological replicates with identical biosample ENCFF287GUR bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIB, ENCFF807MUK 209093780 ENCODE Processing Pipeline d6fb4df0de636dfbac8058a69765e455 https://www.encodeproject.org/files/ENCFF287GUR/@@download/ENCFF287GUR.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF013JXB bam alignments ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIE, ENCFF807MUK 292034579 ENCODE Processing Pipeline 537f61b5912a744a8afca0b6239fdd0e https://www.encodeproject.org/files/ENCFF013JXB/@@download/ENCFF013JXB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF426PHO bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF466DJP, ENCFF684UVH, ENCFF807MUK 4394601980 ENCODE Processing Pipeline 3ca01d3c4067b97e6d675ae6b836555b https://www.encodeproject.org/files/ENCFF426PHO/@@download/ENCFF426PHO.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF256BSJ bam alignments ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF140JKY, ENCFF691JKH, ENCFF807MUK 5653693338 ENCODE Processing Pipeline 0f6363e57e6b0bc68d925a4228b8840b https://www.encodeproject.org/files/ENCFF256BSJ/@@download/ENCFF256BSJ.bam hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF764WTL bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECI, ENCFF807MUK 926912629 ENCODE Processing Pipeline 3fe9e1dbca03e580538346cb0e6f26e4 https://www.encodeproject.org/files/ENCFF764WTL/@@download/ENCFF764WTL.bam hg19 released low read length, antibody characterized with exemption ENCFF366XGP bam alignments ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECK, ENCFF807MUK 931529385 ENCODE Processing Pipeline d08a438563d9cc648f521f4ae8d572f1 https://www.encodeproject.org/files/ENCFF366XGP/@@download/ENCFF366XGP.bam hg19 released low read length, antibody characterized with exemption ENCFF994WEA bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 101 ENCFF139RTA, ENCFF538ENA, ENCFF807MUK 3843778300 ENCODE Processing Pipeline 50f09be68deba3790c51614607c58a7a https://www.encodeproject.org/files/ENCFF994WEA/@@download/ENCFF994WEA.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF449TVZ bam alignments ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 101 ENCFF491BNX, ENCFF807MUK, ENCFF815AHV 5262302090 ENCODE Processing Pipeline d66b0b8d6275a0a79018cb8485bb3935 https://www.encodeproject.org/files/ENCFF449TVZ/@@download/ENCFF449TVZ.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF604MCO bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF307HHE, ENCFF807MUK, ENCFF946JCU 3614728616 ENCODE Processing Pipeline 08d376f750ec8fd4b5c13e84eca3f56e https://www.encodeproject.org/files/ENCFF604MCO/@@download/ENCFF604MCO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF105YMD bam alignments ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF420BRV, ENCFF548XKA, ENCFF807MUK 4082519061 ENCODE Processing Pipeline d14d2d9bdc671ea55662fd4a8a7250a1 https://www.encodeproject.org/files/ENCFF105YMD/@@download/ENCFF105YMD.bam hg19 released missing genetic modification characterization missing control alignments ENCFF247XNT bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 3 100 ENCFF002EMA, ENCFF002EMB, ENCFF807MUK 7240266264 ENCODE Processing Pipeline 9526461c06454f3d21c3d9c44645c942 https://www.encodeproject.org/files/ENCFF247XNT/@@download/ENCFF247XNT.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF803KOJ bam alignments ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 100 ENCFF002ELY, ENCFF002ELZ, ENCFF807MUK 5414633028 ENCODE Processing Pipeline bb9b6cbadeee98a0b9d226aa2377ec60 https://www.encodeproject.org/files/ENCFF803KOJ/@@download/ENCFF803KOJ.bam hg19 released experiment not submitted to GEO partially characterized antibody ENCFF583PRY bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF768RZW, ENCFF779JEY, ENCFF807MUK 3501485997 ENCODE Processing Pipeline 52d57a31242beaf30928548e45c58606 https://www.encodeproject.org/files/ENCFF583PRY/@@download/ENCFF583PRY.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF492TFL bam alignments ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF354KYI, ENCFF807MUK, ENCFF952XTB 4520673993 ENCODE Processing Pipeline ad654af43d6eae9c19ef6cfd57432054 https://www.encodeproject.org/files/ENCFF492TFL/@@download/ENCFF492TFL.bam hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF133FDE bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF080EPR, ENCFF807MUK, ENCFF858BWH 4515784754 ENCODE Processing Pipeline d72f6ab9abe5fc3749eea5c7ff8de757 https://www.encodeproject.org/files/ENCFF133FDE/@@download/ENCFF133FDE.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF698JDD bam alignments ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF110HEA, ENCFF528TQX, ENCFF807MUK 5273117009 ENCODE Processing Pipeline 52d2c14b9baca898d29fdc6b4ff67d4e https://www.encodeproject.org/files/ENCFF698JDD/@@download/ENCFF698JDD.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF499NJO bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 101 ENCFF292AJW, ENCFF513JDU, ENCFF807MUK 4580827608 ENCODE Processing Pipeline 5e14459149e15074d8df4e8c1c6b53af https://www.encodeproject.org/files/ENCFF499NJO/@@download/ENCFF499NJO.bam hg19 released missing genetic modification characterization missing control alignments ENCFF985SIU bam alignments ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 101 ENCFF706OYX, ENCFF754UWT, ENCFF807MUK 5026257737 ENCODE Processing Pipeline 1d5302be447ade72dc34d829568d004d https://www.encodeproject.org/files/ENCFF985SIU/@@download/ENCFF985SIU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF060YYI bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 101 ENCFF410UBV, ENCFF807MUK, ENCFF986WDC 4881520945 ENCODE Processing Pipeline 0acd3653f11cee2399bd9efc20126916 https://www.encodeproject.org/files/ENCFF060YYI/@@download/ENCFF060YYI.bam hg19 released missing genetic modification characterization missing control alignments ENCFF605IDQ bam alignments ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 101 ENCFF495EOX, ENCFF505LMS, ENCFF807MUK 6288718521 ENCODE Processing Pipeline e16ee393cdc6ab36ddc6a7db4fd55af1 https://www.encodeproject.org/files/ENCFF605IDQ/@@download/ENCFF605IDQ.bam hg19 released missing genetic modification characterization missing control alignments ENCFF934QBD bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF601GHH, ENCFF733LFK, ENCFF807MUK 1374455592 ENCODE Processing Pipeline a5b8750687dc7ea3c49ba137de26b70a https://www.encodeproject.org/files/ENCFF934QBD/@@download/ENCFF934QBD.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF228HDI bam alignments ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF807MUK, ENCFF855LSJ, ENCFF983UPK 4302666504 ENCODE Processing Pipeline 6b00f888614673382e6b3ca29bdafe0a https://www.encodeproject.org/files/ENCFF228HDI/@@download/ENCFF228HDI.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF000YZD bam alignments ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YZT 888150945 Kevin Struhl, HMS f89edea95e1d8af854421e90b6842d7a https://www.encodeproject.org/files/ENCFF000YZD/@@download/ENCFF000YZD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YZE bam alignments ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YZS 850930514 Kevin Struhl, HMS 19b5db27dc65d827df791f5268d62140 https://www.encodeproject.org/files/ENCFF000YZE/@@download/ENCFF000YZE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF995SUS bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF357EHL, ENCFF603IPW, ENCFF807MUK 3902590516 ENCODE Processing Pipeline d7266e88e779cd6c1f900865517b9a91 https://www.encodeproject.org/files/ENCFF995SUS/@@download/ENCFF995SUS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF604AUO bam alignments ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF264DQN, ENCFF775QDK, ENCFF807MUK 3659185500 ENCODE Processing Pipeline d13b503978a124f06fe8dc56e2946f15 https://www.encodeproject.org/files/ENCFF604AUO/@@download/ENCFF604AUO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF541GVQ bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF183BQH, ENCFF807MUK 449089321 ENCODE Processing Pipeline b4b9a5f3f489abc3a5e1f44ccf138a43 https://www.encodeproject.org/files/ENCFF541GVQ/@@download/ENCFF541GVQ.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF703DOA bam alignments ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF136VQP, ENCFF807MUK 512025706 ENCODE Processing Pipeline 69519343284f633ceac9ff3ba2077c6c https://www.encodeproject.org/files/ENCFF703DOA/@@download/ENCFF703DOA.bam hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF538ZFY bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF895HBS 1126004109 ENCODE Processing Pipeline de74a2225ee5ea7ea8c508547b51bfb0 https://www.encodeproject.org/files/ENCFF538ZFY/@@download/ENCFF538ZFY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF124AKH bam alignments ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF958ONK 1168946231 ENCODE Processing Pipeline b355b063655ec498c3c72c84108aee79 https://www.encodeproject.org/files/ENCFF124AKH/@@download/ENCFF124AKH.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF961FJC bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 76 ENCFF536WLP, ENCFF807MUK 1962691199 ENCODE Processing Pipeline 0c73b8bf90361d4a8b5972afe5f138ab https://www.encodeproject.org/files/ENCFF961FJC/@@download/ENCFF961FJC.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF681XFM bam alignments ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 76 ENCFF117DNV, ENCFF807MUK 2236473683 ENCODE Processing Pipeline 338bd6ec80b5f6c661fffa9f01d1660b https://www.encodeproject.org/files/ENCFF681XFM/@@download/ENCFF681XFM.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF247DGL bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 3 36 ENCFF002EWN, ENCFF807MUK 732759358 ENCODE Processing Pipeline 9e2384986e29eeea839d4d9e1ab8e65d https://www.encodeproject.org/files/ENCFF247DGL/@@download/ENCFF247DGL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF588CRQ bam alignments ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 36 ENCFF002EWT, ENCFF807MUK 649847687 ENCODE Processing Pipeline 78981bf98cd3ab319341ee8c2987f289 https://www.encodeproject.org/files/ENCFF588CRQ/@@download/ENCFF588CRQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF336QNE bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 50 ENCFF237FXB, ENCFF807MUK 1018402347 ENCODE Processing Pipeline e7e0381615b82c04b00ffb62726ca653 https://www.encodeproject.org/files/ENCFF336QNE/@@download/ENCFF336QNE.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF645WBK bam alignments ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 50 ENCFF214CAS, ENCFF807MUK 1240891913 ENCODE Processing Pipeline 68663c68d73eb09c4872e51c4bd89ae8 https://www.encodeproject.org/files/ENCFF645WBK/@@download/ENCFF645WBK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF000QOZ bam alignments ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPK 1126416927 Richard Myers, HAIB 417e70dd0963608a0b7cae2aca89c211 https://www.encodeproject.org/files/ENCFF000QOZ/@@download/ENCFF000QOZ.bam hg19 released biological replicates with identical biosample ENCFF000QPA bam alignments ENCSR000BTR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPP 1703545319 Richard Myers, HAIB 272a84888069c2dd2859c3a58e29a64c https://www.encodeproject.org/files/ENCFF000QPA/@@download/ENCFF000QPA.bam hg19 released biological replicates with identical biosample ENCFF000XYT bam alignments ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYV 532758487 Peggy Farnham, USC 175c2e7a5216d2d1fb98be81513a7fba https://www.encodeproject.org/files/ENCFF000XYT/@@download/ENCFF000XYT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XZA bam alignments ENCSR000EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYX 424218296 Peggy Farnham, USC 5d52c20579c7604aff3c1758bd6dfd2c https://www.encodeproject.org/files/ENCFF000XZA/@@download/ENCFF000XZA.bam hg19 released low read length biological replicates with identical biosample ENCFF659YOC bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PGI, ENCFF807MUK 370569309 ENCODE Processing Pipeline 3b27311eeefb188f5d11ff47973f0140 https://www.encodeproject.org/files/ENCFF659YOC/@@download/ENCFF659YOC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF275GCD bam alignments ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PGG, ENCFF807MUK 485691004 ENCODE Processing Pipeline dabfb694f12ae1a1f7a7e232041ccca4 https://www.encodeproject.org/files/ENCFF275GCD/@@download/ENCFF275GCD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF000XZN bam alignments ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XZX 177017072 Peggy Farnham, USC dc0c8348f23be838f028c1f0bf4564a6 https://www.encodeproject.org/files/ENCFF000XZN/@@download/ENCFF000XZN.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZP bam alignments ENCSR000EVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XZW 473852311 Peggy Farnham, USC c15dd02fc153d832c4397caf7e4a70e3 https://www.encodeproject.org/files/ENCFF000XZP/@@download/ENCFF000XZP.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF963NKM bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHX, ENCFF807MUK 661608896 ENCODE Processing Pipeline facc4d813825f77f913b714408132973 https://www.encodeproject.org/files/ENCFF963NKM/@@download/ENCFF963NKM.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF918QFL bam alignments ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHV, ENCFF807MUK 582838291 ENCODE Processing Pipeline 67bf4eb9e268e82fad1efb8a7faf1306 https://www.encodeproject.org/files/ENCFF918QFL/@@download/ENCFF918QFL.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NNR bam alignments ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOD 1949847924 Richard Myers, HAIB 31267373c06e3daf653014c1d8a85011 https://www.encodeproject.org/files/ENCFF000NNR/@@download/ENCFF000NNR.bam hg19 released biological replicates with identical biosample ENCFF000NNU bam alignments ENCSR000BUT ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOH 2209195528 Richard Myers, HAIB 39d0ed25e83ee02e90badcf5a148426f https://www.encodeproject.org/files/ENCFF000NNU/@@download/ENCFF000NNU.bam hg19 released biological replicates with identical biosample ENCFF789JGE bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF482UZA, ENCFF807MUK 1417263718 ENCODE Processing Pipeline 5cf8e9879518d5f04d3a3961221fde34 https://www.encodeproject.org/files/ENCFF789JGE/@@download/ENCFF789JGE.bam hg19 released ENCFF541NSS bam alignments ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF587OYH, ENCFF807MUK 4148255494 ENCODE Processing Pipeline 712e47b72b59aaba16a78c2f024db578 https://www.encodeproject.org/files/ENCFF541NSS/@@download/ENCFF541NSS.bam hg19 released ENCFF000QRO bam alignments ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QSI 1894076359 Richard Myers, HAIB 296bd1904da5ed960a0f156cdd3832aa https://www.encodeproject.org/files/ENCFF000QRO/@@download/ENCFF000QRO.bam hg19 released biological replicates with identical biosample ENCFF000QRP bam alignments ENCSR000BUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QSB 1070199199 Richard Myers, HAIB a5a6d40a74d428016dc55ac7d610fe04 https://www.encodeproject.org/files/ENCFF000QRP/@@download/ENCFF000QRP.bam hg19 released biological replicates with identical biosample ENCFF000QQN bam alignments ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QQU 1356180605 Richard Myers, HAIB f96478a75a4ddb548eda2834718039bd https://www.encodeproject.org/files/ENCFF000QQN/@@download/ENCFF000QQN.bam hg19 released biological replicates with identical biosample ENCFF000QQO bam alignments ENCSR000BUM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QQX 2307264302 Richard Myers, HAIB b8d9a4a6e0f3f173d325a549faab9f20 https://www.encodeproject.org/files/ENCFF000QQO/@@download/ENCFF000QQO.bam hg19 released biological replicates with identical biosample ENCFF000QPG bam alignments ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPV 1983141893 Richard Myers, HAIB 8af832e5b3ce6783770f0c987660a2ca https://www.encodeproject.org/files/ENCFF000QPG/@@download/ENCFF000QPG.bam hg19 released biological replicates with identical biosample ENCFF000QPL bam alignments ENCSR000BUZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PML-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPW 1668834195 Richard Myers, HAIB 6bc75b5a9251cc66b8e213ff09a89c21 https://www.encodeproject.org/files/ENCFF000QPL/@@download/ENCFF000QPL.bam hg19 released biological replicates with identical biosample ENCFF730KGN bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF121HEJ, ENCFF807MUK 878468497 ENCODE Processing Pipeline f182aafd81d12d5c2b66546fc8e764d6 https://www.encodeproject.org/files/ENCFF730KGN/@@download/ENCFF730KGN.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF806BMO bam alignments ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF892BYO 2100244523 ENCODE Processing Pipeline 3379626ce940354a7d44ef9a4bf6b1ea https://www.encodeproject.org/files/ENCFF806BMO/@@download/ENCFF806BMO.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF515NFA bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 76 ENCFF807MUK, ENCFF883YYR 1266783533 ENCODE Processing Pipeline 250c47e42295b821aa8b174caac2bb4c https://www.encodeproject.org/files/ENCFF515NFA/@@download/ENCFF515NFA.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF355VOF bam alignments ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 76 ENCFF564QJZ, ENCFF807MUK 1992650714 ENCODE Processing Pipeline 2c2f9cad174803e3d8099ebf4370bdc6 https://www.encodeproject.org/files/ENCFF355VOF/@@download/ENCFF355VOF.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF000NPA bam alignments ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NPL 1771053127 Richard Myers, HAIB c45848e1a9708a67cc35c16c04ac3dea https://www.encodeproject.org/files/ENCFF000NPA/@@download/ENCFF000NPA.bam hg19 released biological replicates with identical biosample ENCFF000NPC bam alignments ENCSR000BTU ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NPJ 1187802135 Richard Myers, HAIB 8663d923fbec45b87b0c76364af4d8e3 https://www.encodeproject.org/files/ENCFF000NPC/@@download/ENCFF000NPC.bam hg19 released biological replicates with identical biosample ENCFF415ELX bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF002XBK, ENCFF807MUK 1044519136 ENCODE Processing Pipeline 13e6683d64d2588547b5a1eb39ee29d3 https://www.encodeproject.org/files/ENCFF415ELX/@@download/ENCFF415ELX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF273TMW bam alignments ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF379ZPU, ENCFF807MUK 1148336341 ENCODE Processing Pipeline e5f429085ec94ae3ee92992d61f14d79 https://www.encodeproject.org/files/ENCFF273TMW/@@download/ENCFF273TMW.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF552ZAM bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF780YNX, ENCFF807MUK 1204041905 ENCODE Processing Pipeline f4187135a13359593d445c4a8a434b1d https://www.encodeproject.org/files/ENCFF552ZAM/@@download/ENCFF552ZAM.bam hg19 released antibody characterized with exemption ENCFF574HZP bam alignments ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108ORY, ENCFF807MUK 1090911474 ENCODE Processing Pipeline 08f8be8a02132ba39d41dde577cc914a https://www.encodeproject.org/files/ENCFF574HZP/@@download/ENCFF574HZP.bam hg19 released antibody characterized with exemption ENCFF467TEV bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 100 ENCFF260XVE, ENCFF390ZPT, ENCFF807MUK 4691945473 ENCODE Processing Pipeline b1f41cbad0d99709da786f52ab3dd7f1 https://www.encodeproject.org/files/ENCFF467TEV/@@download/ENCFF467TEV.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF258YYG bam alignments ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 100 ENCFF204LGU, ENCFF807MUK, ENCFF895OQI 4231183045 ENCODE Processing Pipeline a1bc9d5896dfad782184a1c27dbefa10 https://www.encodeproject.org/files/ENCFF258YYG/@@download/ENCFF258YYG.bam hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF599WUT bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HKU, ENCFF807MUK 496083916 ENCODE Processing Pipeline f5395db0ff67d0d83155d708848c16fc https://www.encodeproject.org/files/ENCFF599WUT/@@download/ENCFF599WUT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF650OIZ bam alignments ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HKV, ENCFF807MUK 589040946 ENCODE Processing Pipeline b64f3b7a991d321e9d60cb209b95aaec https://www.encodeproject.org/files/ENCFF650OIZ/@@download/ENCFF650OIZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF774TIB bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 76 ENCFF371NAN, ENCFF807MUK 1269894450 ENCODE Processing Pipeline 7a23ee176f78414cd117b84d1c135b82 https://www.encodeproject.org/files/ENCFF774TIB/@@download/ENCFF774TIB.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF463MDN bam alignments ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 76 ENCFF345EHR, ENCFF807MUK 1464181818 ENCODE Processing Pipeline 1cc146778f6363c8d960c7abf6c7489a https://www.encodeproject.org/files/ENCFF463MDN/@@download/ENCFF463MDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF153RSF bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJP, ENCFF807MUK 272164452 ENCODE Processing Pipeline d976a07ec19edb56e96f7e0366112db1 https://www.encodeproject.org/files/ENCFF153RSF/@@download/ENCFF153RSF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF037EJX bam alignments ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJQ, ENCFF807MUK 467349798 ENCODE Processing Pipeline 2a7abbe7157faa227c6082e26b556b12 https://www.encodeproject.org/files/ENCFF037EJX/@@download/ENCFF037EJX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF753SCW bam alignments ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 76 ENCFF109ZTA, ENCFF807MUK 1051336298 ENCODE Processing Pipeline 53aa0fe93da0af07e4a1a6f2f9bb5245 https://www.encodeproject.org/files/ENCFF753SCW/@@download/ENCFF753SCW.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF508WWL bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 76 ENCFF777KUN, ENCFF807MUK 992388802 ENCODE Processing Pipeline 56c9e95c3d83f87eece9a0097cc7e041 https://www.encodeproject.org/files/ENCFF508WWL/@@download/ENCFF508WWL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF389WAT bam alignments ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 76 ENCFF257STC, ENCFF807MUK 1053727661 ENCODE Processing Pipeline e6e055de137a9a229ec02f99f309c2b7 https://www.encodeproject.org/files/ENCFF389WAT/@@download/ENCFF389WAT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF043VGV bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF215BOJ, ENCFF416JNG, ENCFF807MUK 6495987313 ENCODE Processing Pipeline f0bef2ec6e65ca90b3bac4c5f2c2133d https://www.encodeproject.org/files/ENCFF043VGV/@@download/ENCFF043VGV.bam hg19 released borderline replicate concordance ENCFF828SPJ bam alignments ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF604CSF, ENCFF807MUK, ENCFF863ZBO 4275802176 ENCODE Processing Pipeline 39ddc67bd26a9a8fd73a17dda3a2f39a https://www.encodeproject.org/files/ENCFF828SPJ/@@download/ENCFF828SPJ.bam hg19 released borderline replicate concordance ENCFF262QTI bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF162GLI, ENCFF807MUK 1101901833 ENCODE Processing Pipeline 4aa5e53470067523250ffdeb35bd6318 https://www.encodeproject.org/files/ENCFF262QTI/@@download/ENCFF262QTI.bam hg19 released low read depth, antibody characterized with exemption ENCFF396PIB bam alignments ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF658DDY, ENCFF807MUK 937152709 ENCODE Processing Pipeline 83e2f8d1849bff512a2af490aa1b7468 https://www.encodeproject.org/files/ENCFF396PIB/@@download/ENCFF396PIB.bam hg19 released low read depth, antibody characterized with exemption ENCFF548BKE bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKJ, ENCFF807MUK 656860782 ENCODE Processing Pipeline 9bce647b573f52055112bf4638dd530e https://www.encodeproject.org/files/ENCFF548BKE/@@download/ENCFF548BKE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF674MDC bam alignments ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKH, ENCFF807MUK 956914143 ENCODE Processing Pipeline e26f3b49412f2d81544acb1eeeae4299 https://www.encodeproject.org/files/ENCFF674MDC/@@download/ENCFF674MDC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF448PML bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SCV, ENCFF807MUK 384620522 ENCODE Processing Pipeline 3f9d91ceaf53ec05e52ac63ee734ec57 https://www.encodeproject.org/files/ENCFF448PML/@@download/ENCFF448PML.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF455HQY bam alignments ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SCQ, ENCFF807MUK 336307595 ENCODE Processing Pipeline 8d652cc202825c46bdcb7efa16540393 https://www.encodeproject.org/files/ENCFF455HQY/@@download/ENCFF455HQY.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF448TOS bam alignments ENCSR097EEA ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 100 ENCFF082IYB, ENCFF331BQR, ENCFF545SYX, ENCFF807MUK, ENCFF972WGI 4314173526 ENCODE Processing Pipeline dffdd65a70554a2af9a258358b7bfa50 https://www.encodeproject.org/files/ENCFF448TOS/@@download/ENCFF448TOS.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF702MHE bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 100 ENCFF043MCW, ENCFF520WVU, ENCFF807MUK 4231217857 ENCODE Processing Pipeline 9d4b2abefc11c63a92eefa59b4c65ceb https://www.encodeproject.org/files/ENCFF702MHE/@@download/ENCFF702MHE.bam hg19 released antibody characterized with exemption ENCFF652SID bam alignments ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 100 ENCFF007HDS, ENCFF807MUK, ENCFF873EXA 4867175121 ENCODE Processing Pipeline a77229da3814d471aef0810cd3a9213e https://www.encodeproject.org/files/ENCFF652SID/@@download/ENCFF652SID.bam hg19 released antibody characterized with exemption ENCFF187ZIE bam alignments ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF763EWZ, ENCFF807MUK, ENCFF828DEK 2005657106 ENCODE Processing Pipeline 008a658604e7fdf31adfc80edf139994 https://www.encodeproject.org/files/ENCFF187ZIE/@@download/ENCFF187ZIE.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF209ZGU bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF724GZW, ENCFF807MUK 529683442 ENCODE Processing Pipeline 76c14e99fd81bf4d47a29fe91895ed79 https://www.encodeproject.org/files/ENCFF209ZGU/@@download/ENCFF209ZGU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF426UGN bam alignments ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF251XXO, ENCFF807MUK 554783135 ENCODE Processing Pipeline db49b93e4ca2fd74ff47707c3df229e3 https://www.encodeproject.org/files/ENCFF426UGN/@@download/ENCFF426UGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF187YDX bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZH, ENCFF807MUK 309178351 ENCODE Processing Pipeline 0c58dd0be7608af3d9c84b4dd1f1ba83 https://www.encodeproject.org/files/ENCFF187YDX/@@download/ENCFF187YDX.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF234DXO bam alignments ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZG, ENCFF807MUK 597556285 ENCODE Processing Pipeline 0d0d50c13ac18ccee1fbf4878e8be6b7 https://www.encodeproject.org/files/ENCFF234DXO/@@download/ENCFF234DXO.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF262VNS bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 76 ENCFF062BQQ, ENCFF807MUK 758457044 ENCODE Processing Pipeline 6f1f783fddd6e9691777a40a6afa9461 https://www.encodeproject.org/files/ENCFF262VNS/@@download/ENCFF262VNS.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF156ZIB bam alignments ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 76 ENCFF319DTT, ENCFF807MUK 4259203035 ENCODE Processing Pipeline aaf7ccd508c7af829a1d10241c5810ff https://www.encodeproject.org/files/ENCFF156ZIB/@@download/ENCFF156ZIB.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF208FMF bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 100 ENCFF163AGA, ENCFF352NWK, ENCFF807MUK 3943203361 ENCODE Processing Pipeline 2a0ab4f554555910ce80e1819ade9553 https://www.encodeproject.org/files/ENCFF208FMF/@@download/ENCFF208FMF.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF421LSY bam alignments ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 100 ENCFF007RQD, ENCFF106LFT, ENCFF807MUK 3778326135 ENCODE Processing Pipeline e2e5c0566cd420f6cc4c78e615b3826a https://www.encodeproject.org/files/ENCFF421LSY/@@download/ENCFF421LSY.bam hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF953SAQ bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 50 ENCFF088CRF, ENCFF807MUK 780951289 ENCODE Processing Pipeline ee706d0402732860923e0e4c17ca8622 https://www.encodeproject.org/files/ENCFF953SAQ/@@download/ENCFF953SAQ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF144CPG bam alignments ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 50 ENCFF052ZGR, ENCFF807MUK 1259652794 ENCODE Processing Pipeline 1772459f11ec738d641217228bd94ae5 https://www.encodeproject.org/files/ENCFF144CPG/@@download/ENCFF144CPG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF055EFE bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 100 ENCFF605PXJ, ENCFF807MUK, ENCFF815CWB 4687423666 ENCODE Processing Pipeline 40e90ef0726e0f0258ec85784e2faa1f https://www.encodeproject.org/files/ENCFF055EFE/@@download/ENCFF055EFE.bam hg19 released ENCFF240UFD bam alignments ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 100 ENCFF527JAY, ENCFF662WYC, ENCFF807MUK 4799216350 ENCODE Processing Pipeline 32973e74e10cf20a95b865ba0603f919 https://www.encodeproject.org/files/ENCFF240UFD/@@download/ENCFF240UFD.bam hg19 released ENCFF646VJD bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 4 100 ENCFF045KIH, ENCFF432IRL, ENCFF807MUK 2740059921 ENCODE Processing Pipeline 0c2570eeabe864dbf8b07d2d1bdb5eca https://www.encodeproject.org/files/ENCFF646VJD/@@download/ENCFF646VJD.bam hg19 released low read depth ENCFF648VRU bam alignments ENCSR391JII ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RCOR1-human DNA False 2016-06-14 ENCODE 3 100 ENCFF693IXS, ENCFF720JCW, ENCFF807MUK 5095133938 ENCODE Processing Pipeline 67beac12962aa33c0f026772a3a99b72 https://www.encodeproject.org/files/ENCFF648VRU/@@download/ENCFF648VRU.bam hg19 released low read depth ENCFF094XLP bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUJ, ENCFF807MUK 638865506 ENCODE Processing Pipeline 8ca71bfb977d134f7f990af016b99212 https://www.encodeproject.org/files/ENCFF094XLP/@@download/ENCFF094XLP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF976PFK bam alignments ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUK, ENCFF807MUK 720157305 ENCODE Processing Pipeline 888bffe649a940164ffdd258f037d7c4 https://www.encodeproject.org/files/ENCFF976PFK/@@download/ENCFF976PFK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF780HMW bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WGX, ENCFF807MUK 612165360 ENCODE Processing Pipeline 8094fa9f81ae140cd792a6dfc09a7b26 https://www.encodeproject.org/files/ENCFF780HMW/@@download/ENCFF780HMW.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF737NXE bam alignments ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WGW, ENCFF807MUK 478522616 ENCODE Processing Pipeline a99090c574b45c8b431e53b57f05ed85 https://www.encodeproject.org/files/ENCFF737NXE/@@download/ENCFF737NXE.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000VZF bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000VZN 302546889 Michael Snyder, Stanford f4f6cd23620e64e1d11ef30807a97f65 https://www.encodeproject.org/files/ENCFF000VZF/@@download/ENCFF000VZF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZG bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000VZW 531699913 Michael Snyder, Stanford 6cef37b54577399d804794bd49f4f946 https://www.encodeproject.org/files/ENCFF000VZG/@@download/ENCFF000VZG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZI bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 3 ENCFF000WAK 776778422 Michael Snyder, Stanford 6bbdb30bedc30b87a0fea555bbca64bf https://www.encodeproject.org/files/ENCFF000VZI/@@download/ENCFF000VZI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VZJ bam alignments ENCSR000EAG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2012-05-14 ENCODE 4 ENCFF000WBF 818431727 Michael Snyder, Stanford 6da37769c2ef666c4e8150817e89ab36 https://www.encodeproject.org/files/ENCFF000VZJ/@@download/ENCFF000VZJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF223OSD bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBF, ENCFF807MUK 186675455 ENCODE Processing Pipeline 716cc41f3ddaa5e4b271843ab07be7d0 https://www.encodeproject.org/files/ENCFF223OSD/@@download/ENCFF223OSD.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF379XXZ bam alignments ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QBN, ENCFF807MUK 929699971 ENCODE Processing Pipeline 964a9d9f9ffdb00a58498f0dbcd5be60 https://www.encodeproject.org/files/ENCFF379XXZ/@@download/ENCFF379XXZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF225AWF bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHV, ENCFF807MUK 887667431 ENCODE Processing Pipeline 883b4fa1b59093541292b91a0376a36c https://www.encodeproject.org/files/ENCFF225AWF/@@download/ENCFF225AWF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF535SPI bam alignments ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHY, ENCFF807MUK 976440852 ENCODE Processing Pipeline b467bab79361638347c1afaaf2d6cd62 https://www.encodeproject.org/files/ENCFF535SPI/@@download/ENCFF535SPI.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF226UHN bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKG, ENCFF807MUK 1169023823 ENCODE Processing Pipeline 75063bf2175de890b9953b28c408b2cb https://www.encodeproject.org/files/ENCFF226UHN/@@download/ENCFF226UHN.bam hg19 released low read length biological replicates with identical biosample ENCFF613UOL bam alignments ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKB, ENCFF807MUK 1095754081 ENCODE Processing Pipeline f4cc302dfb6a37af54800f984c6a83da https://www.encodeproject.org/files/ENCFF613UOL/@@download/ENCFF613UOL.bam hg19 released low read length biological replicates with identical biosample ENCFF919KWN bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRY, ENCFF807MUK 542363441 ENCODE Processing Pipeline fbb3761397410432c37312f01bf44e47 https://www.encodeproject.org/files/ENCFF919KWN/@@download/ENCFF919KWN.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF178SLS bam alignments ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HSF, ENCFF807MUK 916128146 ENCODE Processing Pipeline 2d148ddd7b95e2e81c987a02ca5ab640 https://www.encodeproject.org/files/ENCFF178SLS/@@download/ENCFF178SLS.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF000NNJ bam alignments ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NNX 1789773248 Richard Myers, HAIB 1b5d6655fe108eee61ba5aebe6d3a0e3 https://www.encodeproject.org/files/ENCFF000NNJ/@@download/ENCFF000NNJ.bam hg19 released biological replicates with identical biosample ENCFF000NNQ bam alignments ENCSR000BTY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NNZ 1913031341 Richard Myers, HAIB 9cf7ae05d7e932b8f76847445455a6d2 https://www.encodeproject.org/files/ENCFF000NNQ/@@download/ENCFF000NNQ.bam hg19 released biological replicates with identical biosample ENCFF000YFF bam alignments ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000YFC 620600383 Kevin Struhl, HMS 39b0e9a06a04b0271929092b25490f4c https://www.encodeproject.org/files/ENCFF000YFF/@@download/ENCFF000YFF.bam hg19 released low read length biological replicates with identical biosample ENCFF000YFI bam alignments ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000YFE 687640730 Kevin Struhl, HMS 9e5ea5e2246e678839920cb827ae472e https://www.encodeproject.org/files/ENCFF000YFI/@@download/ENCFF000YFI.bam hg19 released low read length biological replicates with identical biosample ENCFF275SJP bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSD, ENCFF807MUK 703903213 ENCODE Processing Pipeline fe36f6f3e9b60c683a39f2685d62c3b7 https://www.encodeproject.org/files/ENCFF275SJP/@@download/ENCFF275SJP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF934ZAX bam alignments ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSF, ENCFF807MUK 874471660 ENCODE Processing Pipeline c271e39f80602e4f7aa3584441dda643 https://www.encodeproject.org/files/ENCFF934ZAX/@@download/ENCFF934ZAX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF060JAA bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HOQ, ENCFF807MUK 537836576 ENCODE Processing Pipeline 74847caac8fc3fbbda202b9396071e2b https://www.encodeproject.org/files/ENCFF060JAA/@@download/ENCFF060JAA.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF580BHF bam alignments ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HOR, ENCFF807MUK 715748358 ENCODE Processing Pipeline afa0f0627846cef3df5427b93d0b1dff https://www.encodeproject.org/files/ENCFF580BHF/@@download/ENCFF580BHF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF463UJR bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RAT, ENCFF807MUK 484930120 ENCODE Processing Pipeline 1854e1fd83708304d7fb17ae170b2d48 https://www.encodeproject.org/files/ENCFF463UJR/@@download/ENCFF463UJR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF541WKG bam alignments ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RAW, ENCFF807MUK 723765570 ENCODE Processing Pipeline 634ac0e06bf8884c16ee83e6caa410b0 https://www.encodeproject.org/files/ENCFF541WKG/@@download/ENCFF541WKG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF514GQU bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNY, ENCFF807MUK 756814153 ENCODE Processing Pipeline 7c1055129961c02cac0e4167ccaa7abd https://www.encodeproject.org/files/ENCFF514GQU/@@download/ENCFF514GQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF977AXY bam alignments ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNW, ENCFF807MUK 655914006 ENCODE Processing Pipeline 6c53651177f60ce4793e3d344fc46617 https://www.encodeproject.org/files/ENCFF977AXY/@@download/ENCFF977AXY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF922XZM bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QDH, ENCFF807MUK 838568154 ENCODE Processing Pipeline 83f43f6128f5f6870423375e7c88aa36 https://www.encodeproject.org/files/ENCFF922XZM/@@download/ENCFF922XZM.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF183MYT bam alignments ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QDJ, ENCFF807MUK 834574217 ENCODE Processing Pipeline 96ce150872f7d4e1af336fa348ef2772 https://www.encodeproject.org/files/ENCFF183MYT/@@download/ENCFF183MYT.bam hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF000NMN bam alignments ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NNH 1617747605 Richard Myers, HAIB 540283b4285598a5d9c8323209ffd83d https://www.encodeproject.org/files/ENCFF000NMN/@@download/ENCFF000NMN.bam hg19 released biological replicates with identical biosample ENCFF000NMO bam alignments ENCSR000BUS ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NNC 1138592048 Richard Myers, HAIB 17056588af2cf3cae2499eb9169c291a https://www.encodeproject.org/files/ENCFF000NMO/@@download/ENCFF000NMO.bam hg19 released biological replicates with identical biosample ENCFF395SCA bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF001RUN, ENCFF807MUK 1443391646 ENCODE Processing Pipeline 5f6584251153262f49201dc8121e3b05 https://www.encodeproject.org/files/ENCFF395SCA/@@download/ENCFF395SCA.bam hg19 released low read depth, antibody characterized with exemption ENCFF545MBO bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF001RUJ, ENCFF807MUK 1066478481 ENCODE Processing Pipeline 686787c7d09a8992f3636a6cde1915b7 https://www.encodeproject.org/files/ENCFF545MBO/@@download/ENCFF545MBO.bam hg19 released low read depth, antibody characterized with exemption ENCFF727QOD bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 50 ENCFF001RUJ, ENCFF807MUK 1066478509 ENCODE Processing Pipeline 8861d827b4a30e606583ca8c7b9c05ed https://www.encodeproject.org/files/ENCFF727QOD/@@download/ENCFF727QOD.bam hg19 released low read depth, antibody characterized with exemption ENCFF103CZU bam alignments ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 50 ENCFF001RUN, ENCFF807MUK 1443391674 ENCODE Processing Pipeline c74c7ca7e3c86fce1221bad9bf2922f4 https://www.encodeproject.org/files/ENCFF103CZU/@@download/ENCFF103CZU.bam hg19 released low read depth, antibody characterized with exemption ENCFF306XER bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 50 ENCFF251YFI, ENCFF807MUK 806395489 ENCODE Processing Pipeline 9e82ebf237d5944758c27905cc96f527 https://www.encodeproject.org/files/ENCFF306XER/@@download/ENCFF306XER.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF054RVU bam alignments ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 50 ENCFF471BMT, ENCFF718QVM, ENCFF807MUK 1433880391 ENCODE Processing Pipeline bb85e933ff96e6f2f6ad7ac1fcfbc13f https://www.encodeproject.org/files/ENCFF054RVU/@@download/ENCFF054RVU.bam hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF426NNP bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWO, ENCFF807MUK 350839452 ENCODE Processing Pipeline bc797ddb2afbf4c25b14701f0559339e https://www.encodeproject.org/files/ENCFF426NNP/@@download/ENCFF426NNP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF454STL bam alignments ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWS, ENCFF807MUK 771152448 ENCODE Processing Pipeline 29c2e61b664d9712c9711789e7aca064 https://www.encodeproject.org/files/ENCFF454STL/@@download/ENCFF454STL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF764OCO bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 34 ENCFF000WUJ, ENCFF807MUK 215045748 ENCODE Processing Pipeline f0fad1a6fcea821dedc832876dafe1c4 https://www.encodeproject.org/files/ENCFF764OCO/@@download/ENCFF764OCO.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF481XFG bam alignments ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 34 ENCFF000WUH, ENCFF807MUK 186060623 ENCODE Processing Pipeline 9e41a856c83022188560555f8f40d309 https://www.encodeproject.org/files/ENCFF481XFG/@@download/ENCFF481XFG.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF866PHS bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 100 ENCFF007LTF, ENCFF167VUS, ENCFF807MUK 2595980328 ENCODE Processing Pipeline 799a859df2feaff6aaa6d0683bdcf68a https://www.encodeproject.org/files/ENCFF866PHS/@@download/ENCFF866PHS.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF350LLA bam alignments ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 100 ENCFF749GVI, ENCFF807MUK, ENCFF888ZYM 3335272985 ENCODE Processing Pipeline c7fc5797a90b189078834f96f7da93a4 https://www.encodeproject.org/files/ENCFF350LLA/@@download/ENCFF350LLA.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF362ALG bam alignments ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 100 ENCFF353IIG, ENCFF807MUK, ENCFF843LGK 4123282272 ENCODE Processing Pipeline 0cd2aa3fa337ec09f3056196c30d59a8 https://www.encodeproject.org/files/ENCFF362ALG/@@download/ENCFF362ALG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF254KBN bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 100 ENCFF354UBV, ENCFF600KXI, ENCFF807MUK 3533250682 ENCODE Processing Pipeline 6c89022e08fee3bec3e38172c72ec927 https://www.encodeproject.org/files/ENCFF254KBN/@@download/ENCFF254KBN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF650WIA bam alignments ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 100 ENCFF273REO, ENCFF807MUK, ENCFF809ISJ 3278333178 ENCODE Processing Pipeline 3b8d5597c7dd0b6de73dedc3b2f9aa75 https://www.encodeproject.org/files/ENCFF650WIA/@@download/ENCFF650WIA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF000NOG bam alignments ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NOT 1440534138 Richard Myers, HAIB 7ab2451816b63d40c2355f1c63640ed8 https://www.encodeproject.org/files/ENCFF000NOG/@@download/ENCFF000NOG.bam hg19 released biological replicates with identical biosample ENCFF000NOK bam alignments ENCSR000BUE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NOX 1404326119 Richard Myers, HAIB 80d4bc68bcddd61b11523d0adef20ae8 https://www.encodeproject.org/files/ENCFF000NOK/@@download/ENCFF000NOK.bam hg19 released biological replicates with identical biosample ENCFF347PVY bam alignments ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 100 ENCFF229DMT, ENCFF262KPJ, ENCFF807MUK 2535686027 ENCODE Processing Pipeline 1d8e0ded069ae659f7407766f35f665d https://www.encodeproject.org/files/ENCFF347PVY/@@download/ENCFF347PVY.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF272RAF bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF807MUK, ENCFF891KUP, ENCFF964ODQ 6161595250 ENCODE Processing Pipeline 4060449e9dbeb8eadfd350856268410e https://www.encodeproject.org/files/ENCFF272RAF/@@download/ENCFF272RAF.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF031AVI bam alignments ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF201EHD, ENCFF807MUK, ENCFF890MKU 7133038059 ENCODE Processing Pipeline c5ce65d6bc4fc127800cab2e37fb727b https://www.encodeproject.org/files/ENCFF031AVI/@@download/ENCFF031AVI.bam hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF488TLJ bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF002DZU, ENCFF807MUK 747026823 ENCODE Processing Pipeline 93c44ebd20e703cfd33d8f9a329ca222 https://www.encodeproject.org/files/ENCFF488TLJ/@@download/ENCFF488TLJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF416AFC bam alignments ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF002DZV, ENCFF807MUK 812112185 ENCODE Processing Pipeline 3ac89abd5915983a9e1167c4564f5601 https://www.encodeproject.org/files/ENCFF416AFC/@@download/ENCFF416AFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF454MRU bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOS, ENCFF807MUK 288508382 ENCODE Processing Pipeline f65bde2aeaeca820f1ef260f590fe269 https://www.encodeproject.org/files/ENCFF454MRU/@@download/ENCFF454MRU.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF466HUV bam alignments ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOU, ENCFF807MUK 294656434 ENCODE Processing Pipeline f93925a7b402301128eee01b9fc5f91b https://www.encodeproject.org/files/ENCFF466HUV/@@download/ENCFF466HUV.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF078WRQ bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 100 ENCFF248HYP, ENCFF807MUK, ENCFF824XIN 2455063764 ENCODE Processing Pipeline 706d81dde39328f151d7f6cdad70c021 https://www.encodeproject.org/files/ENCFF078WRQ/@@download/ENCFF078WRQ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF669HLL bam alignments ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 100 ENCFF432GOG, ENCFF580CTA, ENCFF807MUK 2520532581 ENCODE Processing Pipeline 7b1aea01dcfed52a4f32f6c7df8693de https://www.encodeproject.org/files/ENCFF669HLL/@@download/ENCFF669HLL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF288XGA bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTL, ENCFF807MUK 288418113 ENCODE Processing Pipeline de5cff384c79044d71cf40d3569e9cac https://www.encodeproject.org/files/ENCFF288XGA/@@download/ENCFF288XGA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF032GHF bam alignments ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTN, ENCFF807MUK 562707311 ENCODE Processing Pipeline 7eab4857a7a7dfa7117daed7623e4339 https://www.encodeproject.org/files/ENCFF032GHF/@@download/ENCFF032GHF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF085VSJ bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF243UPQ, ENCFF301GHT, ENCFF807MUK 3713415003 ENCODE Processing Pipeline f6ee85d38c5d20cb3b0b8d0d4fbfc43d https://www.encodeproject.org/files/ENCFF085VSJ/@@download/ENCFF085VSJ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF924KFO bam alignments ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF603CIN, ENCFF772FZX, ENCFF807MUK 2953462026 ENCODE Processing Pipeline ccfe849e43262a008a8b93e007922262 https://www.encodeproject.org/files/ENCFF924KFO/@@download/ENCFF924KFO.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF102JFM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NNM, ENCFF807MUK 591773368 ENCODE Processing Pipeline 082d838537191d4d1e387750c4315e1d https://www.encodeproject.org/files/ENCFF102JFM/@@download/ENCFF102JFM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF174UCM bam alignments ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NNN, ENCFF807MUK 556291517 ENCODE Processing Pipeline 51f67e120b1fc56ddb937a76a2b8ca78 https://www.encodeproject.org/files/ENCFF174UCM/@@download/ENCFF174UCM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF862PGC bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 50 ENCFF305ZJL, ENCFF807MUK 797758164 ENCODE Processing Pipeline 730e57e0dd12b37196b89632e0b4ab8b https://www.encodeproject.org/files/ENCFF862PGC/@@download/ENCFF862PGC.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF768AST bam alignments ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 50 ENCFF089FKI, ENCFF283JZA, ENCFF807MUK 1572917829 ENCODE Processing Pipeline 76b87b1a132892bcd037de51e8cc3cc6 https://www.encodeproject.org/files/ENCFF768AST/@@download/ENCFF768AST.bam hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF708IMW bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 50 ENCFF189KOF, ENCFF705GVK, ENCFF807MUK 1104510332 ENCODE Processing Pipeline 333e9bec291567977cc179022a3e4dd3 https://www.encodeproject.org/files/ENCFF708IMW/@@download/ENCFF708IMW.bam hg19 released missing genetic modification characterization ENCFF509LLL bam alignments ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 50 ENCFF807MUK, ENCFF829DHH, ENCFF937AKL 1511111931 ENCODE Processing Pipeline 47e27cafbda53762777d0604f6980cb5 https://www.encodeproject.org/files/ENCFF509LLL/@@download/ENCFF509LLL.bam hg19 released missing genetic modification characterization ENCFF875UQI bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 100 ENCFF730DID, ENCFF807MUK, ENCFF907WUT 3522040864 ENCODE Processing Pipeline 1312fdcb151c4c02d72b8ed14d2303cb https://www.encodeproject.org/files/ENCFF875UQI/@@download/ENCFF875UQI.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF901AKT bam alignments ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 100 ENCFF399SYU, ENCFF560UZF, ENCFF807MUK 3394920920 ENCODE Processing Pipeline 549c06c2712bbb06b9b23c388bf82305 https://www.encodeproject.org/files/ENCFF901AKT/@@download/ENCFF901AKT.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF532CDZ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFP, ENCFF807MUK 613824617 ENCODE Processing Pipeline 70db697e3f270019cf5551d36f8aee85 https://www.encodeproject.org/files/ENCFF532CDZ/@@download/ENCFF532CDZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF498BXQ bam alignments ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFQ, ENCFF807MUK 598054346 ENCODE Processing Pipeline bb56840a7baa1cd0fa790a0db697fc35 https://www.encodeproject.org/files/ENCFF498BXQ/@@download/ENCFF498BXQ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF877TJY bam alignments ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF624PVA, ENCFF807MUK, ENCFF827MSA 2932990302 ENCODE Processing Pipeline cabec61a75b0ea82cd15238459cc29aa https://www.encodeproject.org/files/ENCFF877TJY/@@download/ENCFF877TJY.bam hg19 released antibody characterized with exemption ENCFF396RJB bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF534EOG, ENCFF543YKB, ENCFF807MUK 4440516158 ENCODE Processing Pipeline 54a2bed36b5c831e359ebebc321a12c0 https://www.encodeproject.org/files/ENCFF396RJB/@@download/ENCFF396RJB.bam hg19 released missing genetic modification characterization missing control alignments ENCFF999XUY bam alignments ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF298JQC, ENCFF723BUN, ENCFF807MUK 4393325235 ENCODE Processing Pipeline fa39f3a750ad3c77f856eefd8fc9f693 https://www.encodeproject.org/files/ENCFF999XUY/@@download/ENCFF999XUY.bam hg19 released missing genetic modification characterization missing control alignments ENCFF000OAO bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000OBB 1291463709 Richard Myers, HAIB dbdc8e6f75c73c64ccac21113c418b9a https://www.encodeproject.org/files/ENCFF000OAO/@@download/ENCFF000OAO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000OAR bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBE 1304539164 Richard Myers, HAIB 4349753a4fcaa55782ece69642933bcd https://www.encodeproject.org/files/ENCFF000OAR/@@download/ENCFF000OAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865BUP bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OBB, ENCFF807MUK 730991573 ENCODE Processing Pipeline ea451bf9500b1027f5336de0adf709f7 https://www.encodeproject.org/files/ENCFF865BUP/@@download/ENCFF865BUP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF591BQK bam alignments ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OBE, ENCFF807MUK 752226113 ENCODE Processing Pipeline e5ae3519b6a9f8488912e3e192b6c7f6 https://www.encodeproject.org/files/ENCFF591BQK/@@download/ENCFF591BQK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF742LFF bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEM, ENCFF807MUK 521460178 ENCODE Processing Pipeline 1c172268dbb400b25a706fe1e09141dc https://www.encodeproject.org/files/ENCFF742LFF/@@download/ENCFF742LFF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF647PGL bam alignments ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEQ, ENCFF807MUK 460341992 ENCODE Processing Pipeline aa54304f99bdfb2e662585a16cfa9c9e https://www.encodeproject.org/files/ENCFF647PGL/@@download/ENCFF647PGL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF131TEK bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXC, ENCFF807MUK 691733608 ENCODE Processing Pipeline b55b61fdc7825c0672dcbae2e1ab7fde https://www.encodeproject.org/files/ENCFF131TEK/@@download/ENCFF131TEK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF846YRS bam alignments ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXB, ENCFF807MUK 840853005 ENCODE Processing Pipeline 86b49d9b22952f931d86f6f90bf420a4 https://www.encodeproject.org/files/ENCFF846YRS/@@download/ENCFF846YRS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF644FRD bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HJI, ENCFF807MUK 478483874 ENCODE Processing Pipeline 85b19156ca6efaa26bd8381dc1328d5e https://www.encodeproject.org/files/ENCFF644FRD/@@download/ENCFF644FRD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF600BAG bam alignments ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJH, ENCFF807MUK 526772337 ENCODE Processing Pipeline 184beb8013ad8ac5ee7ccb3096296527 https://www.encodeproject.org/files/ENCFF600BAG/@@download/ENCFF600BAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF359UWD bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YZX, ENCFF807MUK 358598104 ENCODE Processing Pipeline 8b698d83db0f9f6187e6aaeb3e097c77 https://www.encodeproject.org/files/ENCFF359UWD/@@download/ENCFF359UWD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF845WVY bam alignments ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YZY, ENCFF807MUK 443970675 ENCODE Processing Pipeline 1476bc4c93496a9f50f06dd5c9f1f44f https://www.encodeproject.org/files/ENCFF845WVY/@@download/ENCFF845WVY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF134HTY bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 100 ENCFF513NXC, ENCFF672NIZ, ENCFF807MUK 3706560681 ENCODE Processing Pipeline 5f051d201019b9932c94b120dbba4d75 https://www.encodeproject.org/files/ENCFF134HTY/@@download/ENCFF134HTY.bam hg19 released low read depth ENCFF518TII bam alignments ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 100 ENCFF005PFF, ENCFF499ADG, ENCFF807MUK 4740574128 ENCODE Processing Pipeline f882fef081b87eb3baf64940ce105b95 https://www.encodeproject.org/files/ENCFF518TII/@@download/ENCFF518TII.bam hg19 released low read depth ENCFF620XKU bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 100 ENCFF310JLM, ENCFF670FTR, ENCFF807MUK 4677992197 ENCODE Processing Pipeline 8f9a227ce782a30192d7d2f3b95b4618 https://www.encodeproject.org/files/ENCFF620XKU/@@download/ENCFF620XKU.bam hg19 released ENCFF676EUR bam alignments ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 100 ENCFF444MWP, ENCFF793GYQ, ENCFF807MUK 3573168723 ENCODE Processing Pipeline 2bf8ad7ca019beb129d1f774f03044ef https://www.encodeproject.org/files/ENCFF676EUR/@@download/ENCFF676EUR.bam hg19 released ENCFF074APO bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RND, ENCFF807MUK 880376856 ENCODE Processing Pipeline b98c60d20b677cbbfed2b6de41d926bb https://www.encodeproject.org/files/ENCFF074APO/@@download/ENCFF074APO.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF440WDV bam alignments ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNB, ENCFF807MUK 929118082 ENCODE Processing Pipeline 5dff134fdabec0333e6fafb7013014e6 https://www.encodeproject.org/files/ENCFF440WDV/@@download/ENCFF440WDV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF773QXS bam alignments ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF644NPE, ENCFF794FMB, ENCFF807MUK 2911933885 ENCODE Processing Pipeline b11149252c40b45d4bf400b745093b98 https://www.encodeproject.org/files/ENCFF773QXS/@@download/ENCFF773QXS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF210YHD bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OFK, ENCFF807MUK 626297927 ENCODE Processing Pipeline b32491c135796fb886d2bafb7b375020 https://www.encodeproject.org/files/ENCFF210YHD/@@download/ENCFF210YHD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF187ZGJ bam alignments ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OFM, ENCFF807MUK 690261890 ENCODE Processing Pipeline 176e0fbfda4e10e02d4d148ab203fcfe https://www.encodeproject.org/files/ENCFF187ZGJ/@@download/ENCFF187ZGJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF115WLQ bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 100 ENCFF531SYI, ENCFF615EVJ, ENCFF807MUK 3844067971 ENCODE Processing Pipeline e0b7f26ffdcb5bc0aea3e2b7da04be9f https://www.encodeproject.org/files/ENCFF115WLQ/@@download/ENCFF115WLQ.bam hg19 released mild to moderate bottlenecking ENCFF868URB bam alignments ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 100 ENCFF034ESF, ENCFF668WFT, ENCFF807MUK 3819756270 ENCODE Processing Pipeline f9bc088cd6904defad61fd60e82d9ddc https://www.encodeproject.org/files/ENCFF868URB/@@download/ENCFF868URB.bam hg19 released mild to moderate bottlenecking ENCFF000NQL bam alignments ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRB 1739768130 Richard Myers, HAIB 3c5f13557bf07e5d73b942928d768a39 https://www.encodeproject.org/files/ENCFF000NQL/@@download/ENCFF000NQL.bam hg19 released biological replicates with identical biosample ENCFF000NQM bam alignments ENCSR000BSW ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRA 1654569366 Richard Myers, HAIB c4098a65eefb0fd5a08c6f39f71c03dc https://www.encodeproject.org/files/ENCFF000NQM/@@download/ENCFF000NQM.bam hg19 released biological replicates with identical biosample ENCFF698NVU bam alignments ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 76 ENCFF471FTR, ENCFF807MUK, ENCFF918QWX 3461342070 ENCODE Processing Pipeline 4c3cd832d6ed2fc6d26c0adf2a2dfd45 https://www.encodeproject.org/files/ENCFF698NVU/@@download/ENCFF698NVU.bam hg19 released antibody characterized with exemption ENCFF100HQM bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPL, ENCFF807MUK 527381795 ENCODE Processing Pipeline 151e54dd73f349e4b8ab5e7c33f8b001 https://www.encodeproject.org/files/ENCFF100HQM/@@download/ENCFF100HQM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF244KNV bam alignments ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPS, ENCFF807MUK 914041967 ENCODE Processing Pipeline 4c35fd9fa66522cd4ef581551aa50e5d https://www.encodeproject.org/files/ENCFF244KNV/@@download/ENCFF244KNV.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF793JQM bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHY, ENCFF807MUK 323760310 ENCODE Processing Pipeline 6de5fe187e6b49fff81f4d43b94fc6f4 https://www.encodeproject.org/files/ENCFF793JQM/@@download/ENCFF793JQM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF587IJL bam alignments ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIB, ENCFF807MUK 528808734 ENCODE Processing Pipeline d7f3da992071c0e9027568acc7abaf94 https://www.encodeproject.org/files/ENCFF587IJL/@@download/ENCFF587IJL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF289RZG bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFR, ENCFF807MUK 483140887 ENCODE Processing Pipeline ff4513f2424297334965ebc18e248462 https://www.encodeproject.org/files/ENCFF289RZG/@@download/ENCFF289RZG.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF236GMW bam alignments ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFZ, ENCFF807MUK 616683061 ENCODE Processing Pipeline d5c79d04eace36d8c32c2673de0a8bbd https://www.encodeproject.org/files/ENCFF236GMW/@@download/ENCFF236GMW.bam hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF522BQD bam alignments ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUW, ENCFF807MUK 729798514 ENCODE Processing Pipeline e4d46ddac407128098ee5b2c05850a27 https://www.encodeproject.org/files/ENCFF522BQD/@@download/ENCFF522BQD.bam hg19 released low read length, low read depth ENCFF651UZJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXA, ENCFF807MUK 284898385 ENCODE Processing Pipeline 2dcece7fa644c33b3c9ec91a7faf6918 https://www.encodeproject.org/files/ENCFF651UZJ/@@download/ENCFF651UZJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF659SUJ bam alignments ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXC, ENCFF807MUK 408553237 ENCODE Processing Pipeline 0b9a0c159415516cfd2c386b184fc260 https://www.encodeproject.org/files/ENCFF659SUJ/@@download/ENCFF659SUJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NEB bam alignments ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NEY 2042702154 Richard Myers, HAIB 5a8a9840535d1e51f69e76fabe51a50e https://www.encodeproject.org/files/ENCFF000NEB/@@download/ENCFF000NEB.bam hg19 released biological replicates with identical biosample ENCFF000NED bam alignments ENCSR000BTN ChIP-seq EFO:0001086 A549 cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NEP 1835334200 Richard Myers, HAIB 6dc15fa03cf2702d656e350440f26c30 https://www.encodeproject.org/files/ENCFF000NED/@@download/ENCFF000NED.bam hg19 released biological replicates with identical biosample ENCFF000XMY bam alignments ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNI 1051694615 Peggy Farnham, USC aa38dedde915852fe43ccfb5b900d5d8 https://www.encodeproject.org/files/ENCFF000XMY/@@download/ENCFF000XMY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XMZ bam alignments ENCSR000EVN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNF 978734134 Peggy Farnham, USC 7e14564056405e5d0f31919a7be9cdbe https://www.encodeproject.org/files/ENCFF000XMZ/@@download/ENCFF000XMZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000WNK bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WNR 186269262 Michael Snyder, Stanford 0ab5ab8e2a7765699fa824de77b00c9e https://www.encodeproject.org/files/ENCFF000WNK/@@download/ENCFF000WNK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNL bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WOA 982408577 Michael Snyder, Stanford 0d39ef7706e26073452908d25b5e9f65 https://www.encodeproject.org/files/ENCFF000WNL/@@download/ENCFF000WNL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNM bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WNZ 380109862 Michael Snyder, Stanford f18b040f0c9d61b553a1a20d684d4b81 https://www.encodeproject.org/files/ENCFF000WNM/@@download/ENCFF000WNM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNO bam alignments ENCSR000EBD ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WOD 722997710 Michael Snyder, Stanford 6846f416f2d16b56b9ca96909d81b409 https://www.encodeproject.org/files/ENCFF000WNO/@@download/ENCFF000WNO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF455VKD bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRJ, ENCFF807MUK 507868592 ENCODE Processing Pipeline e2223999b5e531a4be148630f2b74e6c https://www.encodeproject.org/files/ENCFF455VKD/@@download/ENCFF455VKD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF353IXR bam alignments ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRL, ENCFF807MUK 1076633212 ENCODE Processing Pipeline d2a72b4d0b1594b88fc5a24875d7f6ee https://www.encodeproject.org/files/ENCFF353IXR/@@download/ENCFF353IXR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF875XTU bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF095DPD, ENCFF807MUK 944850440 ENCODE Processing Pipeline 63cf815bf509ea91b361efb619ca8d07 https://www.encodeproject.org/files/ENCFF875XTU/@@download/ENCFF875XTU.bam hg19 released low read depth, antibody characterized with exemption ENCFF584YAE bam alignments ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF087LWV, ENCFF807MUK 1198640942 ENCODE Processing Pipeline 6fb515641c762da6db4a4031f8135307 https://www.encodeproject.org/files/ENCFF584YAE/@@download/ENCFF584YAE.bam hg19 released low read depth, antibody characterized with exemption ENCFF936IVO bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOX, ENCFF807MUK 227983430 ENCODE Processing Pipeline e99a9b1672584bbc0b01ff63244853ed https://www.encodeproject.org/files/ENCFF936IVO/@@download/ENCFF936IVO.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF972AYH bam alignments ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOZ, ENCFF807MUK 340325442 ENCODE Processing Pipeline 2f727d7f01af337ea49666821fec34ad https://www.encodeproject.org/files/ENCFF972AYH/@@download/ENCFF972AYH.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF430WVD bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 100 ENCFF264CHQ, ENCFF807MUK, ENCFF880UNP 5425510416 ENCODE Processing Pipeline 4502420105934849598fa3ff22fd1cac https://www.encodeproject.org/files/ENCFF430WVD/@@download/ENCFF430WVD.bam hg19 released ENCFF544MAP bam alignments ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 100 ENCFF082KHS, ENCFF118URY, ENCFF807MUK 4889208053 ENCODE Processing Pipeline 01a244d31b828f3d10188e2018ec397e https://www.encodeproject.org/files/ENCFF544MAP/@@download/ENCFF544MAP.bam hg19 released ENCFF468DTD bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAK, ENCFF807MUK 686222853 ENCODE Processing Pipeline 20411cd7c4b7b0c71330e62d79b9db23 https://www.encodeproject.org/files/ENCFF468DTD/@@download/ENCFF468DTD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF856ODM bam alignments ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAL, ENCFF807MUK 479225484 ENCODE Processing Pipeline aa0efa41e4f5ce70d965efbfe00fe0bd https://www.encodeproject.org/files/ENCFF856ODM/@@download/ENCFF856ODM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF135ZFA bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 76 ENCFF006ALN, ENCFF807MUK 1288712963 ENCODE Processing Pipeline 14aeec745be9da6d89ab94c50b51b57d https://www.encodeproject.org/files/ENCFF135ZFA/@@download/ENCFF135ZFA.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF466RAE bam alignments ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF824RXN 1455453441 ENCODE Processing Pipeline d0283caa39f550888936683fe0da7558 https://www.encodeproject.org/files/ENCFF466RAE/@@download/ENCFF466RAE.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF214RUL bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXW, ENCFF807MUK 1009716777 ENCODE Processing Pipeline 17cc91e4ed261e46815cf9cd818e46b9 https://www.encodeproject.org/files/ENCFF214RUL/@@download/ENCFF214RUL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF867LOD bam alignments ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYB, ENCFF807MUK 1164055608 ENCODE Processing Pipeline 300ab185e0711db6216286eece31479d https://www.encodeproject.org/files/ENCFF867LOD/@@download/ENCFF867LOD.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF176QWX bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 100 ENCFF447QOS, ENCFF807MUK, ENCFF979JXL 3323065121 ENCODE Processing Pipeline 930479be585aa9115ae9bc1d280ccf14 https://www.encodeproject.org/files/ENCFF176QWX/@@download/ENCFF176QWX.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF880BYE bam alignments ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 100 ENCFF054XVE, ENCFF556DXX, ENCFF807MUK 4968086902 ENCODE Processing Pipeline 231c0c602e0a2b4dbde9b973997c4a4c https://www.encodeproject.org/files/ENCFF880BYE/@@download/ENCFF880BYE.bam hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF000WKO bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WKY 193360681 Michael Snyder, Stanford 8b1299e1dd79ed8b023bd80d4b22d112 https://www.encodeproject.org/files/ENCFF000WKO/@@download/ENCFF000WKO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKP bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WLB 206408201 Michael Snyder, Stanford 4f8627064e48e5e6aa23aacb4259903c https://www.encodeproject.org/files/ENCFF000WKP/@@download/ENCFF000WKP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WKQ bam alignments ENCSR000EAR ChIP-seq EFO:0005347 GM15510 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WKT 157126439 Michael Snyder, Stanford e70b7515b864ff31cc66615ed51fc169 https://www.encodeproject.org/files/ENCFF000WKQ/@@download/ENCFF000WKQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF039HBE bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCY, ENCFF807MUK 810519020 ENCODE Processing Pipeline 80dc16cd0ee9ec8ded03c81b8c2bd7a1 https://www.encodeproject.org/files/ENCFF039HBE/@@download/ENCFF039HBE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF038LCM bam alignments ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YDA, ENCFF807MUK 728648445 ENCODE Processing Pipeline 41b3df03be1366cd189283b9d134de1a https://www.encodeproject.org/files/ENCFF038LCM/@@download/ENCFF038LCM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF044UKM bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HGY, ENCFF807MUK 254403739 ENCODE Processing Pipeline 5dc16db53ae69247c25d085e54313b4b https://www.encodeproject.org/files/ENCFF044UKM/@@download/ENCFF044UKM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF035XEM bam alignments ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHG, ENCFF807MUK 453164893 ENCODE Processing Pipeline d95c2d9b01428b4c1b963f6cec172139 https://www.encodeproject.org/files/ENCFF035XEM/@@download/ENCFF035XEM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF797IAR bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OEP, ENCFF807MUK 431191759 ENCODE Processing Pipeline 24203cd7cd0e3c4610b17fba128869fd https://www.encodeproject.org/files/ENCFF797IAR/@@download/ENCFF797IAR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF060XMV bam alignments ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OEQ, ENCFF807MUK 492749729 ENCODE Processing Pipeline 88eba33a2c5c1b551d5388e818528b52 https://www.encodeproject.org/files/ENCFF060XMV/@@download/ENCFF060XMV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF322TLP bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 100 ENCFF645XNK, ENCFF807MUK, ENCFF950ZQE 4137927770 ENCODE Processing Pipeline 947f677cf24c7a23f532db76da9ba4d7 https://www.encodeproject.org/files/ENCFF322TLP/@@download/ENCFF322TLP.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF328GEU bam alignments ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 100 ENCFF359DZE, ENCFF807MUK, ENCFF970AND 4803859558 ENCODE Processing Pipeline 435b0d32288f0eefce54851580dc3136 https://www.encodeproject.org/files/ENCFF328GEU/@@download/ENCFF328GEU.bam hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF000OWM bam alignments ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OWZ 1359576465 Richard Myers, HAIB 58c5237db477f98ece3ab35285443e9f https://www.encodeproject.org/files/ENCFF000OWM/@@download/ENCFF000OWM.bam hg19 released biological replicates with identical biosample ENCFF000OWQ bam alignments ENCSR000BTV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OXC 2097212135 Richard Myers, HAIB d5de509c457da3e047933ea13202d6d2 https://www.encodeproject.org/files/ENCFF000OWQ/@@download/ENCFF000OWQ.bam hg19 released biological replicates with identical biosample ENCFF355LBA bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BHT, ENCFF807MUK 1096167702 ENCODE Processing Pipeline 9f50e847d8666f5a29943310b3bc4a51 https://www.encodeproject.org/files/ENCFF355LBA/@@download/ENCFF355LBA.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF840LUZ bam alignments ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BHU, ENCFF807MUK 1292013768 ENCODE Processing Pipeline e3988f6a1dd95c86fde6f066ac47a082 https://www.encodeproject.org/files/ENCFF840LUZ/@@download/ENCFF840LUZ.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF697CIN bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 76 ENCFF782RSZ, ENCFF807MUK 1239739508 ENCODE Processing Pipeline 9a89a3c0fbb1e4118ef234ad4f1f9892 https://www.encodeproject.org/files/ENCFF697CIN/@@download/ENCFF697CIN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF829CNY bam alignments ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 76 ENCFF460NRJ, ENCFF807MUK 1977215143 ENCODE Processing Pipeline 391d2eead985a48fd7383f370cea93aa https://www.encodeproject.org/files/ENCFF829CNY/@@download/ENCFF829CNY.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF377MEH bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YHO, ENCFF807MUK 1026732870 ENCODE Processing Pipeline 1cfd31e22dde2f2d2c47aac97d302b5a https://www.encodeproject.org/files/ENCFF377MEH/@@download/ENCFF377MEH.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF353HYR bam alignments ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YHM, ENCFF807MUK 1210457188 ENCODE Processing Pipeline e7e1fd0b4375683b36b5f9d04956a7e4 https://www.encodeproject.org/files/ENCFF353HYR/@@download/ENCFF353HYR.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF917NZU bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZO, ENCFF807MUK 535314901 ENCODE Processing Pipeline 2b1b473378d01e79b18b4728235ab282 https://www.encodeproject.org/files/ENCFF917NZU/@@download/ENCFF917NZU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF512AMK bam alignments ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZQ, ENCFF807MUK 506623907 ENCODE Processing Pipeline 5cb23442e8156f5df610311a5bb9bfbb https://www.encodeproject.org/files/ENCFF512AMK/@@download/ENCFF512AMK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF214OIG bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MWR, ENCFF807MUK 936042068 ENCODE Processing Pipeline 9ecf1c2e567e6168404e607a36f2663f https://www.encodeproject.org/files/ENCFF214OIG/@@download/ENCFF214OIG.bam hg19 released low read length biological replicates with identical biosample ENCFF488IBU bam alignments ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MWV, ENCFF807MUK 1291191700 ENCODE Processing Pipeline f322b755b94ffb769f18ea0e2c9ab0e4 https://www.encodeproject.org/files/ENCFF488IBU/@@download/ENCFF488IBU.bam hg19 released low read length biological replicates with identical biosample ENCFF697DRW bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF928MCL 1252951867 ENCODE Processing Pipeline 50608a61416fc596aa32335488147720 https://www.encodeproject.org/files/ENCFF697DRW/@@download/ENCFF697DRW.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF454AYY bam alignments ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 76 ENCFF649ROJ, ENCFF807MUK 1560031248 ENCODE Processing Pipeline a283f8c646208343c86f49e660439304 https://www.encodeproject.org/files/ENCFF454AYY/@@download/ENCFF454AYY.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF415RJB bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QVC, ENCFF807MUK 471786864 ENCODE Processing Pipeline 16d5d8e0856a748bbcae7c90e1d5a3d2 https://www.encodeproject.org/files/ENCFF415RJB/@@download/ENCFF415RJB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF523END bam alignments ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QVE, ENCFF807MUK 722198110 ENCODE Processing Pipeline 4460613f75839e4a4f8f5565abe2c9e0 https://www.encodeproject.org/files/ENCFF523END/@@download/ENCFF523END.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF855QOS bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 76 ENCFF807MUK, ENCFF885OGQ 1640884151 ENCODE Processing Pipeline 5bd3a38f947cb62d7447c22f77f6df59 https://www.encodeproject.org/files/ENCFF855QOS/@@download/ENCFF855QOS.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF988EJM bam alignments ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 76 ENCFF379UBY, ENCFF807MUK 2010893336 ENCODE Processing Pipeline 6c0c448d3f1590d08a113f73d03080f0 https://www.encodeproject.org/files/ENCFF988EJM/@@download/ENCFF988EJM.bam hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF000ZBS bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZBY 207267628 Kevin Struhl, HMS ae6c3d24e10de7064ec789f4a5bcafa5 https://www.encodeproject.org/files/ENCFF000ZBS/@@download/ENCFF000ZBS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBT bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZCN 169163426 Kevin Struhl, HMS 9f5bae3aee3e27453c9d0c1819d41737 https://www.encodeproject.org/files/ENCFF000ZBT/@@download/ENCFF000ZBT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000ZBU bam alignments ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000ZCO 231618007 Kevin Struhl, HMS df10f95736f0ae1e9958562aa2aad357 https://www.encodeproject.org/files/ENCFF000ZBU/@@download/ENCFF000ZBU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJA bam alignments ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJQ 1153813415 Michael Snyder, Stanford caa86d49a2faaa0c13f38f20228b520f https://www.encodeproject.org/files/ENCFF000XJA/@@download/ENCFF000XJA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XJC bam alignments ENCSR000EDJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJL 494756001 Michael Snyder, Stanford 1edcd2cb33900a5811142a5a53fb048f https://www.encodeproject.org/files/ENCFF000XJC/@@download/ENCFF000XJC.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF159NGH bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZT, ENCFF807MUK 911961721 ENCODE Processing Pipeline 17ddc3f358276c44db275b9bc044419d https://www.encodeproject.org/files/ENCFF159NGH/@@download/ENCFF159NGH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF983PHR bam alignments ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZW, ENCFF807MUK 1136943540 ENCODE Processing Pipeline da7a55ca787d0233ed7ed7e04da0ffd9 https://www.encodeproject.org/files/ENCFF983PHR/@@download/ENCFF983PHR.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF515SHZ bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NDV, ENCFF807MUK 933678255 ENCODE Processing Pipeline 0eca7e4443808e2f73c31ad8b6233229 https://www.encodeproject.org/files/ENCFF515SHZ/@@download/ENCFF515SHZ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF158ZUT bam alignments ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NDY, ENCFF807MUK 1138681082 ENCODE Processing Pipeline 51caa14cb784fefdea94cc8e2ca503bf https://www.encodeproject.org/files/ENCFF158ZUT/@@download/ENCFF158ZUT.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000NQE bam alignments ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NQP 1495758181 Richard Myers, HAIB 090a5f531ff9f73552240763879735e5 https://www.encodeproject.org/files/ENCFF000NQE/@@download/ENCFF000NQE.bam hg19 released biological replicates with identical biosample ENCFF000NQH bam alignments ENCSR000BUV ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NQT 1379047009 Richard Myers, HAIB c0a2a2b31a788df3017cd651aa473f7d https://www.encodeproject.org/files/ENCFF000NQH/@@download/ENCFF000NQH.bam hg19 released biological replicates with identical biosample ENCFF694UQR bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 4 ENCFF234SUV, ENCFF294HST, ENCFF807MUK 5910549848 ENCODE Processing Pipeline a9d84818b23ba39ff9bba5a886da5e6a https://www.encodeproject.org/files/ENCFF694UQR/@@download/ENCFF694UQR.bam hg19 released antibody characterized with exemption ENCFF856DSG bam alignments ENCSR029LBT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXP1-human DNA False 2017-01-27 ENCODE 3 ENCFF175BVH, ENCFF363OSM, ENCFF807MUK 5682901118 ENCODE Processing Pipeline de5fd93526ceef23dd020576f946fdac https://www.encodeproject.org/files/ENCFF856DSG/@@download/ENCFF856DSG.bam hg19 released antibody characterized with exemption ENCFF703RUQ bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YRO, ENCFF807MUK 519909086 ENCODE Processing Pipeline 33d8ce5a4026c8a02e033acf39c660d6 https://www.encodeproject.org/files/ENCFF703RUQ/@@download/ENCFF703RUQ.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF987HMV bam alignments ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YSL, ENCFF807MUK 245949919 ENCODE Processing Pipeline c5556c8f6ee39156cbc3fc9c9b2b4fd2 https://www.encodeproject.org/files/ENCFF987HMV/@@download/ENCFF987HMV.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000QOJ bam alignments ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QOV 841849016 Richard Myers, HAIB e448bb6ef8983b6cb77542ed6052b88b https://www.encodeproject.org/files/ENCFF000QOJ/@@download/ENCFF000QOJ.bam hg19 released biological replicates with identical biosample ENCFF000QOM bam alignments ENCSR000BUY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOY 1680803929 Richard Myers, HAIB 105ed54f58edcdb519171d8f7b1d50e6 https://www.encodeproject.org/files/ENCFF000QOM/@@download/ENCFF000QOM.bam hg19 released biological replicates with identical biosample ENCFF636ISQ bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPJ, ENCFF807MUK 259788558 ENCODE Processing Pipeline 438e61d5e9f744d17eb806ecc405dbf2 https://www.encodeproject.org/files/ENCFF636ISQ/@@download/ENCFF636ISQ.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF457SCP bam alignments ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPI, ENCFF807MUK 321840886 ENCODE Processing Pipeline 4f01a3e97009032300a1c0208eeb69f0 https://www.encodeproject.org/files/ENCFF457SCP/@@download/ENCFF457SCP.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YNP bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YNX 153584597 Kevin Struhl, HMS e511533be270d8ef3b3c1d13f472f159 https://www.encodeproject.org/files/ENCFF000YNP/@@download/ENCFF000YNP.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF000YNR bam alignments ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YNW 187964677 Kevin Struhl, HMS 358e41ae85a28f50e9e0566d1e05356a https://www.encodeproject.org/files/ENCFF000YNR/@@download/ENCFF000YNR.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF312WJL bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NMB, ENCFF807MUK 517323305 ENCODE Processing Pipeline 694a08dc1f1c04c8049da9310190f32d https://www.encodeproject.org/files/ENCFF312WJL/@@download/ENCFF312WJL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF122FZS bam alignments ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NMD, ENCFF807MUK 438928413 ENCODE Processing Pipeline 9443439be86652e09a02e310144e2364 https://www.encodeproject.org/files/ENCFF122FZS/@@download/ENCFF122FZS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF879AJU bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAH, ENCFF807MUK 510780075 ENCODE Processing Pipeline 5bfd82ae48513ab427aa0383f3ed4af7 https://www.encodeproject.org/files/ENCFF879AJU/@@download/ENCFF879AJU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF336HSE bam alignments ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NAI, ENCFF807MUK 641934085 ENCODE Processing Pipeline f2115baea14a16ca4fffba42c21b1be3 https://www.encodeproject.org/files/ENCFF336HSE/@@download/ENCFF336HSE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF756YAE bam alignments ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONI, ENCFF807MUK 570896640 ENCODE Processing Pipeline bf202ac988a85c6ab616041a1cf8d2a7 https://www.encodeproject.org/files/ENCFF756YAE/@@download/ENCFF756YAE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF643EGO bam alignments ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 100 ENCFF254TVF, ENCFF791UGB, ENCFF807MUK 3860867483 ENCODE Processing Pipeline 715a19871c7b968eb1eb09d485a1e9ff https://www.encodeproject.org/files/ENCFF643EGO/@@download/ENCFF643EGO.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF249IWE bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHG, ENCFF807MUK 744111148 ENCODE Processing Pipeline d7a12d8bb12ba0c4eece1572ce99a14c https://www.encodeproject.org/files/ENCFF249IWE/@@download/ENCFF249IWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF466SFU bam alignments ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHE, ENCFF807MUK 863691631 ENCODE Processing Pipeline 00d1e925c921582ff0aac755a088a122 https://www.encodeproject.org/files/ENCFF466SFU/@@download/ENCFF466SFU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF034NHE bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXY, ENCFF807MUK 830756089 ENCODE Processing Pipeline f49b37c7d186b373286d193b3069c4f3 https://www.encodeproject.org/files/ENCFF034NHE/@@download/ENCFF034NHE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF585DEP bam alignments ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XYC, ENCFF807MUK 845076804 ENCODE Processing Pipeline c802b908ab68bd757e691c3096d07823 https://www.encodeproject.org/files/ENCFF585DEP/@@download/ENCFF585DEP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF758YOO bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSD, ENCFF807MUK 464403317 ENCODE Processing Pipeline 0a86a5781ebcc92b6f5fec282fc4dc98 https://www.encodeproject.org/files/ENCFF758YOO/@@download/ENCFF758YOO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF899LXA bam alignments ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VSF, ENCFF807MUK 677705359 ENCODE Processing Pipeline 6bdbd9a999606efce617dfabb2e03a51 https://www.encodeproject.org/files/ENCFF899LXA/@@download/ENCFF899LXA.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF725HAK bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PXA, ENCFF807MUK 1316308524 ENCODE Processing Pipeline d246a9cf545c29e2afafc93ffaf574f7 https://www.encodeproject.org/files/ENCFF725HAK/@@download/ENCFF725HAK.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF045NWB bam alignments ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PXB, ENCFF807MUK 1204326321 ENCODE Processing Pipeline b714da8ce6d1dc2f3c9beb9db078b3da https://www.encodeproject.org/files/ENCFF045NWB/@@download/ENCFF045NWB.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF898ZMA bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WCS, ENCFF807MUK 434930583 ENCODE Processing Pipeline 63f1ade0ed4be6cd931b18af0051c98e https://www.encodeproject.org/files/ENCFF898ZMA/@@download/ENCFF898ZMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF785LYN bam alignments ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WCR, ENCFF807MUK 406376259 ENCODE Processing Pipeline df043a90bfc841dc79a34cd8a8984edb https://www.encodeproject.org/files/ENCFF785LYN/@@download/ENCFF785LYN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF265GRP bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YMR, ENCFF807MUK 555520343 ENCODE Processing Pipeline 1bfa7bf5cdf048121cf48d691d3d1ce3 https://www.encodeproject.org/files/ENCFF265GRP/@@download/ENCFF265GRP.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF526XKG bam alignments ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YMO, ENCFF807MUK 744278179 ENCODE Processing Pipeline 4ef380229811029cc5057f1618f10485 https://www.encodeproject.org/files/ENCFF526XKG/@@download/ENCFF526XKG.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF842LBP bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZDK, ENCFF807MUK 658689988 ENCODE Processing Pipeline bdd2ebb549ed00c308d41395586ef435 https://www.encodeproject.org/files/ENCFF842LBP/@@download/ENCFF842LBP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF851ZZA bam alignments ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZDJ, ENCFF807MUK 664834462 ENCODE Processing Pipeline 04ce13717d085bc10feb84b9581a1f2a https://www.encodeproject.org/files/ENCFF851ZZA/@@download/ENCFF851ZZA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001HNZ bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HOE 555081028 John Stamatoyannopoulos, UW 71e45b8525be08dc3d47571ebea735dd https://www.encodeproject.org/files/ENCFF001HNZ/@@download/ENCFF001HNZ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF863WTF bam alignments ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HOE, ENCFF807MUK 422442956 ENCODE Processing Pipeline ad14029f5c3cd6680a40725217a9b19b https://www.encodeproject.org/files/ENCFF863WTF/@@download/ENCFF863WTF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF211KFP bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUU, ENCFF807MUK 926109487 ENCODE Processing Pipeline 96b36854c998d052a1c7ff9e3683aa14 https://www.encodeproject.org/files/ENCFF211KFP/@@download/ENCFF211KFP.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF792OIY bam alignments ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVK, ENCFF807MUK 894138121 ENCODE Processing Pipeline c7f1ef82bc5e4d34204b11bfd3a928f6 https://www.encodeproject.org/files/ENCFF792OIY/@@download/ENCFF792OIY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF386AHN bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000NYY, ENCFF807MUK 340390215 ENCODE Processing Pipeline bc0ecd7ea08abaa5640f1e0b1c142ce3 https://www.encodeproject.org/files/ENCFF386AHN/@@download/ENCFF386AHN.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF259SJI bam alignments ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000NZA, ENCFF807MUK 468458084 ENCODE Processing Pipeline 1c2a8be0cbaf0f980b167a119bc13f2b https://www.encodeproject.org/files/ENCFF259SJI/@@download/ENCFF259SJI.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF372ODE bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WDC, ENCFF807MUK 574433201 ENCODE Processing Pipeline d5160e5929e52bedd074eb726fcd31f9 https://www.encodeproject.org/files/ENCFF372ODE/@@download/ENCFF372ODE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299WJB bam alignments ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WDE, ENCFF807MUK 721801861 ENCODE Processing Pipeline 51e3ae0d00482db6a58c53e2114fb717 https://www.encodeproject.org/files/ENCFF299WJB/@@download/ENCFF299WJB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF311CJK bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OCE, ENCFF807MUK 340589424 ENCODE Processing Pipeline 9405e20e9a0ca9e5f313300b0bdcde8d https://www.encodeproject.org/files/ENCFF311CJK/@@download/ENCFF311CJK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF800DLO bam alignments ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OCH, ENCFF807MUK 465654843 ENCODE Processing Pipeline 9d77563737166da7a7c9e2ccf22fd823 https://www.encodeproject.org/files/ENCFF800DLO/@@download/ENCFF800DLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF445HFT bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XZI, ENCFF807MUK 651105809 ENCODE Processing Pipeline 8daea42d1ead4e0c6a1d4f46210bd9ae https://www.encodeproject.org/files/ENCFF445HFT/@@download/ENCFF445HFT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF082FBL bam alignments ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XZL, ENCFF807MUK 722239309 ENCODE Processing Pipeline 944310ee25cbc47706641cc7039d440a https://www.encodeproject.org/files/ENCFF082FBL/@@download/ENCFF082FBL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF896HUN bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVR, ENCFF807MUK 170623031 ENCODE Processing Pipeline ed354a7be6ff0abc694ae26deac3c549 https://www.encodeproject.org/files/ENCFF896HUN/@@download/ENCFF896HUN.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF428ISY bam alignments ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YUU, ENCFF000YUV, ENCFF807MUK 297859183 ENCODE Processing Pipeline 9777eab0f408d1c9d81e9c7277058f05 https://www.encodeproject.org/files/ENCFF428ISY/@@download/ENCFF428ISY.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF826BOX bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZES, ENCFF807MUK 565653699 ENCODE Processing Pipeline 9d2c7e6cb607b7ee443d82e07d1c2a1c https://www.encodeproject.org/files/ENCFF826BOX/@@download/ENCFF826BOX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF943KAZ bam alignments ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZEU, ENCFF807MUK 481195741 ENCODE Processing Pipeline 65a4d40ae36cf536109bb24ac8d4e1d9 https://www.encodeproject.org/files/ENCFF943KAZ/@@download/ENCFF943KAZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF872IPB bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZEC, ENCFF807MUK 787717478 ENCODE Processing Pipeline 99e7ee2437bc916119657c3ae534af46 https://www.encodeproject.org/files/ENCFF872IPB/@@download/ENCFF872IPB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF347FTA bam alignments ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZEA, ENCFF807MUK 1164317195 ENCODE Processing Pipeline 86c24af8e5400c15bfcd0cdc25472ccb https://www.encodeproject.org/files/ENCFF347FTA/@@download/ENCFF347FTA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384RBC bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VVG, ENCFF807MUK 773126796 ENCODE Processing Pipeline cd6d87182ddaa5d11d34523d1c12df9c https://www.encodeproject.org/files/ENCFF384RBC/@@download/ENCFF384RBC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF329PQZ bam alignments ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VVI, ENCFF807MUK 861764562 ENCODE Processing Pipeline 93e97c58d9f3f25aaaf0cf44e23d68c5 https://www.encodeproject.org/files/ENCFF329PQZ/@@download/ENCFF329PQZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF764AHB bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 76 ENCFF610JND, ENCFF807MUK 1964058670 ENCODE Processing Pipeline 04ca7fb54375c387447b26567cc3369f https://www.encodeproject.org/files/ENCFF764AHB/@@download/ENCFF764AHB.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF430YAL bam alignments ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 76 ENCFF570AAN, ENCFF807MUK 1389790198 ENCODE Processing Pipeline 6819bc2e16b1366e7e6e523a78dbc5b7 https://www.encodeproject.org/files/ENCFF430YAL/@@download/ENCFF430YAL.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF263ZPM bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YXC, ENCFF807MUK 827464358 ENCODE Processing Pipeline f1141e9454d68f0ceb3255b274f1f2c3 https://www.encodeproject.org/files/ENCFF263ZPM/@@download/ENCFF263ZPM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF207UON bam alignments ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YXE, ENCFF807MUK 803810930 ENCODE Processing Pipeline a85141cd50167b4d8d8a760fb37cb6f9 https://www.encodeproject.org/files/ENCFF207UON/@@download/ENCFF207UON.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF532FFM bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZGC, ENCFF807MUK 902934250 ENCODE Processing Pipeline cfd09cc1e9a197d4b9c3536af32a377e https://www.encodeproject.org/files/ENCFF532FFM/@@download/ENCFF532FFM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF028RMR bam alignments ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZGA, ENCFF807MUK 836342428 ENCODE Processing Pipeline ae393dfcbdfadc60c3191659d00436d8 https://www.encodeproject.org/files/ENCFF028RMR/@@download/ENCFF028RMR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF000YOJ bam alignments ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YOP 150930955 Kevin Struhl, HMS b1892cb5230a491fa6498272e823f9d2 https://www.encodeproject.org/files/ENCFF000YOJ/@@download/ENCFF000YOJ.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000YOK bam alignments ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YOQ 367422796 Kevin Struhl, HMS 5a3eaeb8574bd6f54e63a5bf1cfc9299 https://www.encodeproject.org/files/ENCFF000YOK/@@download/ENCFF000YOK.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000RRL bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RRR 515007396 Vishwanath Iyer, UTA a50fd7fa5ff7c9bd4e94a5cf5651ac98 https://www.encodeproject.org/files/ENCFF000RRL/@@download/ENCFF000RRL.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000RRO bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RRS 503075162 Vishwanath Iyer, UTA 5bfcb2932d1e88a1ec0b4fc20448f0c0 https://www.encodeproject.org/files/ENCFF000RRO/@@download/ENCFF000RRO.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF583JRS bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RRR, ENCFF807MUK 389605804 ENCODE Processing Pipeline ecc97c46676a4900c3f6b8f15e1bdd41 https://www.encodeproject.org/files/ENCFF583JRS/@@download/ENCFF583JRS.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF965VPN bam alignments ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RRS, ENCFF807MUK 364324248 ENCODE Processing Pipeline 7c7b4ea5b24153d071c8519eb4a3cecc https://www.encodeproject.org/files/ENCFF965VPN/@@download/ENCFF965VPN.bam hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000SAG bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SAO 1186430919 Vishwanath Iyer, UTA 6ac34e5ef7a3aa98b3334203cad14d5b https://www.encodeproject.org/files/ENCFF000SAG/@@download/ENCFF000SAG.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000SAH bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SAP 1250025953 Vishwanath Iyer, UTA e2fab780aaf4bee24f03352db1c37307 https://www.encodeproject.org/files/ENCFF000SAH/@@download/ENCFF000SAH.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF484ASN bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SAO, ENCFF807MUK 837651103 ENCODE Processing Pipeline 3674473d861823a7d320bea17ec8f05f https://www.encodeproject.org/files/ENCFF484ASN/@@download/ENCFF484ASN.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF520PEP bam alignments ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SAP, ENCFF807MUK 816287844 ENCODE Processing Pipeline b48f1aa234b495376685154acd532276 https://www.encodeproject.org/files/ENCFF520PEP/@@download/ENCFF520PEP.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF906VXN bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YOG, ENCFF807MUK 623607592 ENCODE Processing Pipeline 44e2e94fe5c903937a9269cfd6cdfe21 https://www.encodeproject.org/files/ENCFF906VXN/@@download/ENCFF906VXN.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF042SFT bam alignments ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YOE, ENCFF807MUK 837033830 ENCODE Processing Pipeline 43affdd36f5d53891db2717f9605ae02 https://www.encodeproject.org/files/ENCFF042SFT/@@download/ENCFF042SFT.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189XLI bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKF, ENCFF807MUK 314613447 ENCODE Processing Pipeline 3fead3e9598f0ce64f3686cc9ce43ccd https://www.encodeproject.org/files/ENCFF189XLI/@@download/ENCFF189XLI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF872BSD bam alignments ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKI, ENCFF807MUK 732713870 ENCODE Processing Pipeline c09b4756f74c36bf14527f52df5fe98b https://www.encodeproject.org/files/ENCFF872BSD/@@download/ENCFF872BSD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF212ITE bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XXZ, ENCFF807MUK 817308680 ENCODE Processing Pipeline 781969b51ec4525fb080d0ffbd0c95b5 https://www.encodeproject.org/files/ENCFF212ITE/@@download/ENCFF212ITE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF513YON bam alignments ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XXX, ENCFF807MUK 749628531 ENCODE Processing Pipeline 90d1d3dbdd0aa7a4d45fae7ad60fab21 https://www.encodeproject.org/files/ENCFF513YON/@@download/ENCFF513YON.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF470HDG bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZL, ENCFF807MUK 728121413 ENCODE Processing Pipeline 2d8337c358539f1e1b34903dd1d8debd https://www.encodeproject.org/files/ENCFF470HDG/@@download/ENCFF470HDG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF525AMA bam alignments ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZJ, ENCFF807MUK 746478482 ENCODE Processing Pipeline ef3f8b8fed4177fffee3aefb7af60148 https://www.encodeproject.org/files/ENCFF525AMA/@@download/ENCFF525AMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF002HVX bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHW, ENCFF807MUK 521818077 ENCODE Processing Pipeline 6177641e703611bd8195b2f5e8e830ab https://www.encodeproject.org/files/ENCFF002HVX/@@download/ENCFF002HVX.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF698QEQ bam alignments ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHV, ENCFF807MUK 400358556 ENCODE Processing Pipeline 33dd9d51c697bfe6c01be02b0c899a33 https://www.encodeproject.org/files/ENCFF698QEQ/@@download/ENCFF698QEQ.bam hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF585HLM bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 100 ENCFF228VAR, ENCFF739VNU, ENCFF807MUK 6658346880 ENCODE Processing Pipeline e133facfb594a320982d5c025409c03b https://www.encodeproject.org/files/ENCFF585HLM/@@download/ENCFF585HLM.bam hg19 released ENCFF261IPD bam alignments ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 100 ENCFF107ZQT, ENCFF387RWU, ENCFF807MUK 6279949494 ENCODE Processing Pipeline 6319567efd8df69f66d27887647b2498 https://www.encodeproject.org/files/ENCFF261IPD/@@download/ENCFF261IPD.bam hg19 released ENCFF778YDK bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 100 ENCFF202KVA, ENCFF235SEI, ENCFF807MUK 3570282680 ENCODE Processing Pipeline fef9a289fb2df975e9cf017a4842893f https://www.encodeproject.org/files/ENCFF778YDK/@@download/ENCFF778YDK.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF456JRF bam alignments ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 100 ENCFF065DPP, ENCFF645KUF, ENCFF807MUK 4420752107 ENCODE Processing Pipeline 0c850b1a42473855c28d5be4827f03d9 https://www.encodeproject.org/files/ENCFF456JRF/@@download/ENCFF456JRF.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF447POJ bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZFB, ENCFF807MUK 677322179 ENCODE Processing Pipeline 9c9942d11919f44c8be423a2eda9bdda https://www.encodeproject.org/files/ENCFF447POJ/@@download/ENCFF447POJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF134QYH bam alignments ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZFD, ENCFF807MUK 637841517 ENCODE Processing Pipeline fdc028e481babf82746f0289d11d2de6 https://www.encodeproject.org/files/ENCFF134QYH/@@download/ENCFF134QYH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF709NTI bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZNK, ENCFF807MUK 204423818 ENCODE Processing Pipeline 52205d9d59856730720f2ed9b6be3bf2 https://www.encodeproject.org/files/ENCFF709NTI/@@download/ENCFF709NTI.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF928FQV bam alignments ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZNJ, ENCFF807MUK 360336746 ENCODE Processing Pipeline 5548123d646dd915c57540efecae2b6b https://www.encodeproject.org/files/ENCFF928FQV/@@download/ENCFF928FQV.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF282HGE bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZR, ENCFF807MUK 371009343 ENCODE Processing Pipeline f33a150ee263cf2e560af55d31d0f140 https://www.encodeproject.org/files/ENCFF282HGE/@@download/ENCFF282HGE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF433HND bam alignments ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZT, ENCFF807MUK 392017313 ENCODE Processing Pipeline b5a089e1a2599747b99ecfac66934ac9 https://www.encodeproject.org/files/ENCFF433HND/@@download/ENCFF433HND.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000SCR bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SDG 402388596 Vishwanath Iyer, UTA 5accce939e98c93a055e0fea4ebfa312 https://www.encodeproject.org/files/ENCFF000SCR/@@download/ENCFF000SCR.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF000SCT bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SDQ 403095305 Vishwanath Iyer, UTA 19d148ee9ed4c31b8ca3a52747f2d2bb https://www.encodeproject.org/files/ENCFF000SCT/@@download/ENCFF000SCT.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF877UTE bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SDG, ENCFF807MUK 229174550 ENCODE Processing Pipeline 98cb066e7717047fe987bfbcdbb1d62b https://www.encodeproject.org/files/ENCFF877UTE/@@download/ENCFF877UTE.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF305SDG bam alignments ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SDQ, ENCFF807MUK 223500095 ENCODE Processing Pipeline 0c55c4f69a8607ca8dca502ce1e0daf5 https://www.encodeproject.org/files/ENCFF305SDG/@@download/ENCFF305SDG.bam hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF501JGN bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRA, ENCFF807MUK 780631540 ENCODE Processing Pipeline 687376ea52b6f12b2fb12c94656916cc https://www.encodeproject.org/files/ENCFF501JGN/@@download/ENCFF501JGN.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF162OTW bam alignments ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQZ, ENCFF807MUK 951786844 ENCODE Processing Pipeline d8bb3ca65731d5177ed06dceb28f14e6 https://www.encodeproject.org/files/ENCFF162OTW/@@download/ENCFF162OTW.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF081GVK bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFR, ENCFF807MUK 768923803 ENCODE Processing Pipeline d4f98d7bea55ad5423605f02a12991ee https://www.encodeproject.org/files/ENCFF081GVK/@@download/ENCFF081GVK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF906RQV bam alignments ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFQ, ENCFF807MUK 563089241 ENCODE Processing Pipeline e5ec87ad5e45fd477bb067b947dee0fa https://www.encodeproject.org/files/ENCFF906RQV/@@download/ENCFF906RQV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000QLX bam alignments ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QMJ 1419615679 Richard Myers, HAIB e8ca4323152733cdfd573b310bf2fc8b https://www.encodeproject.org/files/ENCFF000QLX/@@download/ENCFF000QLX.bam hg19 released biological replicates with identical biosample ENCFF000QMA bam alignments ENCSR000BSS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QMK 902365118 Richard Myers, HAIB aa200d1678fa678e741adb5cf7e61ee8 https://www.encodeproject.org/files/ENCFF000QMA/@@download/ENCFF000QMA.bam hg19 released biological replicates with identical biosample ENCFF000XXN bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYE 161264137 Michael Snyder, Stanford c38aecf5f76a2f89cbd6ba5a5cab9c3c https://www.encodeproject.org/files/ENCFF000XXN/@@download/ENCFF000XXN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXO bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYB 126667521 Michael Snyder, Stanford 3bdabcdcaf46636d74658f625eb05697 https://www.encodeproject.org/files/ENCFF000XXO/@@download/ENCFF000XXO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXP bam alignments ENCSR000EEO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens insulin and 22-hydroxycholesterol 6.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYA 124598957 Michael Snyder, Stanford 720e8cdcc59742144972dd5a89c8d5da https://www.encodeproject.org/files/ENCFF000XXP/@@download/ENCFF000XXP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF015LGN bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQA, ENCFF807MUK 384999991 ENCODE Processing Pipeline 8bd0c34d671299bf275482a2fbd2ac24 https://www.encodeproject.org/files/ENCFF015LGN/@@download/ENCFF015LGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF909PBK bam alignments ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQM, ENCFF807MUK 342472928 ENCODE Processing Pipeline d48d8ecaac7edb582298e4006f04f0cb https://www.encodeproject.org/files/ENCFF909PBK/@@download/ENCFF909PBK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF362KQB bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOX, ENCFF807MUK 460085432 ENCODE Processing Pipeline ff65f6901b9d305840e00da53f9974ba https://www.encodeproject.org/files/ENCFF362KQB/@@download/ENCFF362KQB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF325QSH bam alignments ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOU, ENCFF807MUK 313873500 ENCODE Processing Pipeline 929eac20b814bc3f62a53fbd63779ca1 https://www.encodeproject.org/files/ENCFF325QSH/@@download/ENCFF325QSH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF697EBC bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 50 ENCFF807MUK, ENCFF887BKA 847566567 ENCODE Processing Pipeline 99d4d82c09345a62a1973841e6ede201 https://www.encodeproject.org/files/ENCFF697EBC/@@download/ENCFF697EBC.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF092VSU bam alignments ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 50 ENCFF354VZR, ENCFF807MUK 863714936 ENCODE Processing Pipeline 3f8e471bd628e7c08363f9e8c8174fee https://www.encodeproject.org/files/ENCFF092VSU/@@download/ENCFF092VSU.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF602FUW bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF071PWE, ENCFF602NSL, ENCFF807MUK 3229198483 ENCODE Processing Pipeline 292f7bf8147f95924578bee182d7deb0 https://www.encodeproject.org/files/ENCFF602FUW/@@download/ENCFF602FUW.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF559EGU bam alignments ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF031RWN, ENCFF031WIT, ENCFF807MUK 4188110604 ENCODE Processing Pipeline 4104474b5a57c8e3b27a507c41c7b2f0 https://www.encodeproject.org/files/ENCFF559EGU/@@download/ENCFF559EGU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF481VJG bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000SEB, ENCFF807MUK 496027567 ENCODE Processing Pipeline e5d323ff7a8cb74547ab7b746909dbd7 https://www.encodeproject.org/files/ENCFF481VJG/@@download/ENCFF481VJG.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF211IRJ bam alignments ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000SEC, ENCFF807MUK 674176637 ENCODE Processing Pipeline 561731705285fbf358bafae4b7dfdef3 https://www.encodeproject.org/files/ENCFF211IRJ/@@download/ENCFF211IRJ.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF661CVS bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WHO, ENCFF807MUK 572890189 ENCODE Processing Pipeline d5e3547bebb544ee976b11013a1e95b3 https://www.encodeproject.org/files/ENCFF661CVS/@@download/ENCFF661CVS.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF159LJP bam alignments ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WHR, ENCFF807MUK 625030008 ENCODE Processing Pipeline 1610db70f776b8b73786fe6a1cff48a9 https://www.encodeproject.org/files/ENCFF159LJP/@@download/ENCFF159LJP.bam hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF221PEC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NSE, ENCFF807MUK 954884711 ENCODE Processing Pipeline 46c1bd399708a542e17ee816290147b5 https://www.encodeproject.org/files/ENCFF221PEC/@@download/ENCFF221PEC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF957MQC bam alignments ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NSG, ENCFF807MUK 1067644656 ENCODE Processing Pipeline 5cdfe5a785f504275beeea240bcdadb2 https://www.encodeproject.org/files/ENCFF957MQC/@@download/ENCFF957MQC.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000RVZ bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RWH 279084064 Vishwanath Iyer, UTA b6f045181f3c736fe61f1115a8f0769f https://www.encodeproject.org/files/ENCFF000RVZ/@@download/ENCFF000RVZ.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWA bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RWK 258741395 Vishwanath Iyer, UTA ffca69645c43876754c54eadf64fbd4a https://www.encodeproject.org/files/ENCFF000RWA/@@download/ENCFF000RWA.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000RWB bam alignments ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 3 ENCFF000RWO 565453098 Vishwanath Iyer, UTA d8c249b29be04638c9b23cc197c7dba1 https://www.encodeproject.org/files/ENCFF000RWB/@@download/ENCFF000RWB.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000YGT bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YHE 735915824 Kevin Struhl, HMS 2e9b80c6510ccecdd14165f1bc6f6f18 https://www.encodeproject.org/files/ENCFF000YGT/@@download/ENCFF000YGT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGU bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YHB 589270885 Kevin Struhl, HMS 8b4d8d2ce10540fdd564eea8f59d1665 https://www.encodeproject.org/files/ENCFF000YGU/@@download/ENCFF000YGU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGV bam alignments ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHD 742901263 Kevin Struhl, HMS f4abeba64a2d9886a8bf70d7678d432d https://www.encodeproject.org/files/ENCFF000YGV/@@download/ENCFF000YGV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF397CHN bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZKX, ENCFF807MUK 404917814 ENCODE Processing Pipeline 86f37e7fba67c2137c3ae00e9aaec365 https://www.encodeproject.org/files/ENCFF397CHN/@@download/ENCFF397CHN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF479DQX bam alignments ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZKY, ENCFF807MUK 755401105 ENCODE Processing Pipeline a0d1bd39bb38223fdf0203b16d32c02b https://www.encodeproject.org/files/ENCFF479DQX/@@download/ENCFF479DQX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF298ULI bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XOS, ENCFF807MUK 705674581 ENCODE Processing Pipeline e614d33fcd7e1eaea51dc1b148060a74 https://www.encodeproject.org/files/ENCFF298ULI/@@download/ENCFF298ULI.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF384OAK bam alignments ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XOU, ENCFF807MUK 687835806 ENCODE Processing Pipeline 124d0578b03f76f9ebfee95a200f1110 https://www.encodeproject.org/files/ENCFF384OAK/@@download/ENCFF384OAK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF939MPS bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMB, ENCFF807MUK 950291014 ENCODE Processing Pipeline 9af0884e680011890ae8b41653439a02 https://www.encodeproject.org/files/ENCFF939MPS/@@download/ENCFF939MPS.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF021FUK bam alignments ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMC, ENCFF807MUK 936295625 ENCODE Processing Pipeline a173820dfab27c49a8c32623a5bc0eeb https://www.encodeproject.org/files/ENCFF021FUK/@@download/ENCFF021FUK.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF000WZL bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WZR 677812960 Michael Snyder, Stanford a9c450132aa47e66f949c537afe2d57e https://www.encodeproject.org/files/ENCFF000WZL/@@download/ENCFF000WZL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZM bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WZT 646633221 Michael Snyder, Stanford 663e81060e0345715bdfc9468245bf5a https://www.encodeproject.org/files/ENCFF000WZM/@@download/ENCFF000WZM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZO bam alignments ENCSR000EDM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WZZ 753480212 Michael Snyder, Stanford e65a62f2bb472802742f51be4e99c07a https://www.encodeproject.org/files/ENCFF000WZO/@@download/ENCFF000WZO.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF964HQE bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WSW, ENCFF807MUK 682893031 ENCODE Processing Pipeline 1f4df7e0b3ea949f59091f4cf7fcbf04 https://www.encodeproject.org/files/ENCFF964HQE/@@download/ENCFF964HQE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF113EJS bam alignments ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WSV, ENCFF807MUK 744434890 ENCODE Processing Pipeline ee2a30692166c87700ed058923c4045e https://www.encodeproject.org/files/ENCFF113EJS/@@download/ENCFF113EJS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF971NYX bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWJ, ENCFF807MUK 900987988 ENCODE Processing Pipeline 86826c8fce21232b58de9b85857cd0f5 https://www.encodeproject.org/files/ENCFF971NYX/@@download/ENCFF971NYX.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF613XRK bam alignments ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWS, ENCFF807MUK 1120425154 ENCODE Processing Pipeline 9244823d0b1749babc63c2eb08e93729 https://www.encodeproject.org/files/ENCFF613XRK/@@download/ENCFF613XRK.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF000QSM bam alignments ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QTA 807451601 Richard Myers, HAIB fe3a4f2f245abdc337e016795b6a8ba9 https://www.encodeproject.org/files/ENCFF000QSM/@@download/ENCFF000QSM.bam hg19 released biological replicates with identical biosample ENCFF000QSP bam alignments ENCSR000BUP ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QTD 1110408651 Richard Myers, HAIB 5ea30b7ce394e924eaeb7bdd707b5b7c https://www.encodeproject.org/files/ENCFF000QSP/@@download/ENCFF000QSP.bam hg19 released biological replicates with identical biosample ENCFF001HVT bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HWA 1023830434 John Stamatoyannopoulos, UW f176d1cffa45fa71953ab30500bd44a1 https://www.encodeproject.org/files/ENCFF001HVT/@@download/ENCFF001HVT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF225KSP bam alignments ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF001HWA, ENCFF807MUK 858386586 ENCODE Processing Pipeline 8a57101a4657f82470331e5a33c99e14 https://www.encodeproject.org/files/ENCFF225KSP/@@download/ENCFF225KSP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF456OEK bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVB, ENCFF807MUK 534719094 ENCODE Processing Pipeline b5f6d59f4ca74f403be67cea9c832c4c https://www.encodeproject.org/files/ENCFF456OEK/@@download/ENCFF456OEK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF089LSW bam alignments ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVC, ENCFF807MUK 490443429 ENCODE Processing Pipeline 19fcd8f17e7404d4a2ee0d72a3058aab https://www.encodeproject.org/files/ENCFF089LSW/@@download/ENCFF089LSW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ZTH bam alignments ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 289089538 Peggy Farnham, USC 642d9e5c763f5681102347c16f554397 https://www.encodeproject.org/files/ENCFF000ZTH/@@download/ENCFF000ZTH.bam hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF000ZTG bam alignments ENCSR348AGV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens SETDB1-human DNA see document see document False 2017-06-01 ENCODE 412023249 Peggy Farnham, USC 1c061491b46db110cce4c49ae56a1da2 https://www.encodeproject.org/files/ENCFF000ZTG/@@download/ENCFF000ZTG.bam hg19 released low read length, mixed read lengths missing derived_from, experiment not submitted to GEO insufficient read length ENCFF386FSS bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VXY, ENCFF807MUK 600228288 ENCODE Processing Pipeline f7bf4764af090adaddd114302fa92536 https://www.encodeproject.org/files/ENCFF386FSS/@@download/ENCFF386FSS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF892REX bam alignments ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VYA, ENCFF807MUK 642385480 ENCODE Processing Pipeline 658863e5572f970eabd43e86c20dc6ef https://www.encodeproject.org/files/ENCFF892REX/@@download/ENCFF892REX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OZM bam alignments ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZV 1353621360 Richard Myers, HAIB 141088c8f7ec64822744793adf3861ac https://www.encodeproject.org/files/ENCFF000OZM/@@download/ENCFF000OZM.bam hg19 released biological replicates with identical biosample ENCFF000OZP bam alignments ENCSR000BTE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens FOSL1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZZ 1382563273 Richard Myers, HAIB 2acf39a22add16ae105404d66dc215f9 https://www.encodeproject.org/files/ENCFF000OZP/@@download/ENCFF000OZP.bam hg19 released biological replicates with identical biosample ENCFF000MYI bam alignments ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000MYX 1609296950 Richard Myers, HAIB a3b3697c38702680560ddc0e6f70af87 https://www.encodeproject.org/files/ENCFF000MYI/@@download/ENCFF000MYI.bam hg19 released biological replicates with identical biosample ENCFF000MYM bam alignments ENCSR000BTC ChIP-seq EFO:0001086 A549 cell line Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000MYY 1363266130 Richard Myers, HAIB 0dbb4f2c014d47de80d362344e139c6c https://www.encodeproject.org/files/ENCFF000MYM/@@download/ENCFF000MYM.bam hg19 released biological replicates with identical biosample ENCFF244QRT bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 76 ENCFF482RBF, ENCFF807MUK 973556139 ENCODE Processing Pipeline af4d126ddad40bc2b0b26e0c8f8c5cdd https://www.encodeproject.org/files/ENCFF244QRT/@@download/ENCFF244QRT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF706WAT bam alignments ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 76 ENCFF268REE, ENCFF807MUK 1051364467 ENCODE Processing Pipeline 9023fed389e469cd522209e4cad839cd https://www.encodeproject.org/files/ENCFF706WAT/@@download/ENCFF706WAT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF975ADV bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OAD, ENCFF807MUK 560822826 ENCODE Processing Pipeline 4cd1cb59446830b972144f30c1b6a646 https://www.encodeproject.org/files/ENCFF975ADV/@@download/ENCFF975ADV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF183DZU bam alignments ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OAF, ENCFF807MUK 666963521 ENCODE Processing Pipeline 2025825749236bed4a08edd407832e2e https://www.encodeproject.org/files/ENCFF183DZU/@@download/ENCFF183DZU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF450ZYV bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYP, ENCFF807MUK 922052382 ENCODE Processing Pipeline 389424699fd722dbda72af494c1fd5cc https://www.encodeproject.org/files/ENCFF450ZYV/@@download/ENCFF450ZYV.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF068EQL bam alignments ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYQ, ENCFF807MUK 1092507543 ENCODE Processing Pipeline 0c0bd724b4de5f7c506f99baab676d3f https://www.encodeproject.org/files/ENCFF068EQL/@@download/ENCFF068EQL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF304KVB bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIR, ENCFF807MUK 553525130 ENCODE Processing Pipeline 49c99e6a7a5dbf539c9b3c9df38f8ea9 https://www.encodeproject.org/files/ENCFF304KVB/@@download/ENCFF304KVB.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF512CKS bam alignments ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIT, ENCFF807MUK 708371792 ENCODE Processing Pipeline 1c7d496ddb483fd84c392549a89d09ba https://www.encodeproject.org/files/ENCFF512CKS/@@download/ENCFF512CKS.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF180OPA bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVP, ENCFF807MUK 708697626 ENCODE Processing Pipeline 09ff3abcd9774a363c1e01512fbbc37b https://www.encodeproject.org/files/ENCFF180OPA/@@download/ENCFF180OPA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF585QSQ bam alignments ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVR, ENCFF807MUK 721303807 ENCODE Processing Pipeline 0d6d61976d66bcddcace8ad1a6364301 https://www.encodeproject.org/files/ENCFF585QSQ/@@download/ENCFF585QSQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299GON bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 76 ENCFF425WHZ, ENCFF807MUK 1622317513 ENCODE Processing Pipeline a005208e70dbd6c49f3c65fc6802d637 https://www.encodeproject.org/files/ENCFF299GON/@@download/ENCFF299GON.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF728PFP bam alignments ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 76 ENCFF807MUK, ENCFF930REO 1322166885 ENCODE Processing Pipeline cd0fa4ae99c29b8728d7508a07910019 https://www.encodeproject.org/files/ENCFF728PFP/@@download/ENCFF728PFP.bam hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF361LSB bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VVV, ENCFF807MUK 610923120 ENCODE Processing Pipeline 17bdbeced8295ba9bfd1bf229223f9d9 https://www.encodeproject.org/files/ENCFF361LSB/@@download/ENCFF361LSB.bam hg19 released low read length, low read depth control insufficient read depth ENCFF507DXP bam alignments ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVX, ENCFF807MUK 828492143 ENCODE Processing Pipeline 5514d739d1af72a0e15feb46991c61d0 https://www.encodeproject.org/files/ENCFF507DXP/@@download/ENCFF507DXP.bam hg19 released low read length, low read depth control insufficient read depth ENCFF656PTN bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZFH, ENCFF807MUK 453435524 ENCODE Processing Pipeline 731c46704a14be5203f24ed4de41b416 https://www.encodeproject.org/files/ENCFF656PTN/@@download/ENCFF656PTN.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF232PMQ bam alignments ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZFI, ENCFF807MUK 331155840 ENCODE Processing Pipeline fd673b8b39e6e0178acdf106afc46635 https://www.encodeproject.org/files/ENCFF232PMQ/@@download/ENCFF232PMQ.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000YXP bam alignments ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXT 146164790 Michael Snyder, Stanford afd80adf402822a51208ddcbb0aa8b58 https://www.encodeproject.org/files/ENCFF000YXP/@@download/ENCFF000YXP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXQ bam alignments ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYA 139904241 Michael Snyder, Stanford 740bf0c412cd173cf72ee5ba4e41e63f https://www.encodeproject.org/files/ENCFF000YXQ/@@download/ENCFF000YXQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000NTW bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NUK 989932051 Richard Myers, HAIB 5b94f937bdcad78638c91cfb72dda6f0 https://www.encodeproject.org/files/ENCFF000NTW/@@download/ENCFF000NTW.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000NTZ bam alignments ENCSR000BUF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NUL 1581843009 Richard Myers, HAIB 5bb63ee013eaaee5e1aaecc483f1f629 https://www.encodeproject.org/files/ENCFF000NTZ/@@download/ENCFF000NTZ.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF254PCL bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAA, ENCFF807MUK 662297943 ENCODE Processing Pipeline 90bbec3075493d154aa88a071fdb8256 https://www.encodeproject.org/files/ENCFF254PCL/@@download/ENCFF254PCL.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF215VRH bam alignments ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAC, ENCFF807MUK 889519511 ENCODE Processing Pipeline 51f30dff509608950c33385f6fc7b07e https://www.encodeproject.org/files/ENCFF215VRH/@@download/ENCFF215VRH.bam hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF756TTX bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF444RSD, ENCFF807MUK 741640215 ENCODE Processing Pipeline 4a8878fff1ac7c9d83a70230b2467ec2 https://www.encodeproject.org/files/ENCFF756TTX/@@download/ENCFF756TTX.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF833MPT bam alignments ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF240REY, ENCFF807MUK 1201925025 ENCODE Processing Pipeline 769d4f76d51e3688bc3cbd3632b67a9c https://www.encodeproject.org/files/ENCFF833MPT/@@download/ENCFF833MPT.bam hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF675GHT bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 76 ENCFF452XLY, ENCFF807MUK 1189620140 ENCODE Processing Pipeline aab33ccfa5d672dbb91fbcb1d3536e64 https://www.encodeproject.org/files/ENCFF675GHT/@@download/ENCFF675GHT.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF672KKI bam alignments ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 76 ENCFF734HBO, ENCFF807MUK 1469979929 ENCODE Processing Pipeline 83234c1da673928dec8c97ed079cd2d6 https://www.encodeproject.org/files/ENCFF672KKI/@@download/ENCFF672KKI.bam hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF000PXN bam alignments ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PXY 1491813857 Richard Myers, HAIB 26009d0c8d224772fd045f6aa974da63 https://www.encodeproject.org/files/ENCFF000PXN/@@download/ENCFF000PXN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PXO bam alignments ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PYC 2113540264 Richard Myers, HAIB a48153d9353437785570616f55bf6fa6 https://www.encodeproject.org/files/ENCFF000PXO/@@download/ENCFF000PXO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF909FDN bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 76 ENCFF300QMB, ENCFF807MUK 1096876481 ENCODE Processing Pipeline 3a8665bde532d484c8250e189e5b52b8 https://www.encodeproject.org/files/ENCFF909FDN/@@download/ENCFF909FDN.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF509PAA bam alignments ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 76 ENCFF807MUK, ENCFF842KVM 1142053179 ENCODE Processing Pipeline 1912f94452f31ff2f6de03c2d8dd6b43 https://www.encodeproject.org/files/ENCFF509PAA/@@download/ENCFF509PAA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF628QPJ bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGA, ENCFF807MUK 613622703 ENCODE Processing Pipeline 357f0c3acce71cd504bdec3d8bf7aca4 https://www.encodeproject.org/files/ENCFF628QPJ/@@download/ENCFF628QPJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF987ZHK bam alignments ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGF, ENCFF807MUK 739532545 ENCODE Processing Pipeline 762e6cd9526e2dc9102a246e15f7430f https://www.encodeproject.org/files/ENCFF987ZHK/@@download/ENCFF987ZHK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000XGG bam alignments ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XGO 327518781 Michael Snyder, Stanford e9b00802ce6a91150bbc3d3961e37a9e https://www.encodeproject.org/files/ENCFF000XGG/@@download/ENCFF000XGG.bam hg19 released low read length biological replicates with identical biosample ENCFF000XGH bam alignments ENCSR000EDF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XGQ 356622796 Michael Snyder, Stanford 89c96f9e474097c9e2dd201c185f452d https://www.encodeproject.org/files/ENCFF000XGH/@@download/ENCFF000XGH.bam hg19 released low read length biological replicates with identical biosample ENCFF415OZI bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WEB, ENCFF807MUK 701402384 ENCODE Processing Pipeline f6d03568e08ffe7bac80c0968e9abed9 https://www.encodeproject.org/files/ENCFF415OZI/@@download/ENCFF415OZI.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF797XWM bam alignments ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WEC, ENCFF807MUK 992869792 ENCODE Processing Pipeline d625ca2d02329028eef7e73d58c9e34a https://www.encodeproject.org/files/ENCFF797XWM/@@download/ENCFF797XWM.bam hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF141XQF bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPF, ENCFF807MUK 357156878 ENCODE Processing Pipeline 8a3bbf81135b3be43210cabbbe52a2c5 https://www.encodeproject.org/files/ENCFF141XQF/@@download/ENCFF141XQF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF133HNA bam alignments ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPC, ENCFF807MUK 835317640 ENCODE Processing Pipeline d01fc2b5b1a318d7512f1945015a03b4 https://www.encodeproject.org/files/ENCFF133HNA/@@download/ENCFF133HNA.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF187NWS bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OCO, ENCFF807MUK 1223093856 ENCODE Processing Pipeline 2b08f5391556de23d2685890c27c597c https://www.encodeproject.org/files/ENCFF187NWS/@@download/ENCFF187NWS.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF987SJL bam alignments ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OCP, ENCFF807MUK 1304072691 ENCODE Processing Pipeline 3d84de396b7843d51a9ee68831ba31fb https://www.encodeproject.org/files/ENCFF987SJL/@@download/ENCFF987SJL.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WLR bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WMC 667635870 Michael Snyder, Stanford b4a24d8e4ea7a478df188c88b18bc977 https://www.encodeproject.org/files/ENCFF000WLR/@@download/ENCFF000WLR.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLS bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WMB 531429343 Michael Snyder, Stanford 081316109f3674cac1afcefe3c50320f https://www.encodeproject.org/files/ENCFF000WLS/@@download/ENCFF000WLS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLT bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WLY 244183527 Michael Snyder, Stanford 19731bf53a1ac75655641cea26c65172 https://www.encodeproject.org/files/ENCFF000WLT/@@download/ENCFF000WLT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WLV bam alignments ENCSR000EAU ChIP-seq EFO:0005332 GM18505 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WML 1058509363 Michael Snyder, Stanford f54aa6773ff20c4a93eb9409e50f74f1 https://www.encodeproject.org/files/ENCFF000WLV/@@download/ENCFF000WLV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF213CVR bam alignments ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF012WDS, ENCFF347JRV, ENCFF807MUK 4327450521 ENCODE Processing Pipeline 89e756f10f2011236b7d83c614188c19 https://www.encodeproject.org/files/ENCFF213CVR/@@download/ENCFF213CVR.bam hg19 released antibody characterized with exemption ENCFF000QKZ bam alignments ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QLO 1684306415 Richard Myers, HAIB 7f18e56ff08b1a43caac9c6172e420e9 https://www.encodeproject.org/files/ENCFF000QKZ/@@download/ENCFF000QKZ.bam hg19 released biological replicates with identical biosample ENCFF000QLD bam alignments ENCSR000BSR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QLL 838549157 Richard Myers, HAIB c33df82aeb8a72962b144091b736a5c3 https://www.encodeproject.org/files/ENCFF000QLD/@@download/ENCFF000QLD.bam hg19 released biological replicates with identical biosample ENCFF090MZL bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 100 ENCFF034WFD, ENCFF183THJ, ENCFF807MUK 4344310165 ENCODE Processing Pipeline ee423e3350dfab55522c84d8e4e86479 https://www.encodeproject.org/files/ENCFF090MZL/@@download/ENCFF090MZL.bam hg19 released missing genetic modification characterization ENCFF572JRO bam alignments ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 100 ENCFF137GVE, ENCFF807MUK, ENCFF991EAW 4142716252 ENCODE Processing Pipeline 2909a498bee2c1df6acc619092ff8853 https://www.encodeproject.org/files/ENCFF572JRO/@@download/ENCFF572JRO.bam hg19 released missing genetic modification characterization ENCFF000XAZ bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBK 326010695 Sherman Weissman, Yale e1b30a621a0bd62f31f6923bc00a69fd https://www.encodeproject.org/files/ENCFF000XAZ/@@download/ENCFF000XAZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBA bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBL 336108432 Sherman Weissman, Yale 5f0c3a0c6c6e2a4888203a02d617c6b2 https://www.encodeproject.org/files/ENCFF000XBA/@@download/ENCFF000XBA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XBB bam alignments ENCSR000EZC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XBJ 310777655 Sherman Weissman, Yale 95045fa95b982720382139f6214affc3 https://www.encodeproject.org/files/ENCFF000XBB/@@download/ENCFF000XBB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF391MCN bam alignments ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000AVS, ENCFF000AVU, ENCFF807MUK 978901500 ENCODE Processing Pipeline 4461965524dd50ebbf18e3fcaefb2560 https://www.encodeproject.org/files/ENCFF391MCN/@@download/ENCFF391MCN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000XHA bam alignments ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XHD 533995909 Michael Snyder, Stanford e1124ed94cf7267c042be0fd3d238224 https://www.encodeproject.org/files/ENCFF000XHA/@@download/ENCFF000XHA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XHB bam alignments ENCSR000ECN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XHF 440209344 Michael Snyder, Stanford 73a664ee203857d22ba873e8cdac3af8 https://www.encodeproject.org/files/ENCFF000XHB/@@download/ENCFF000XHB.bam hg19 released low read length biological replicates with identical biosample ENCFF290VXO bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 100 ENCFF541TDH, ENCFF551WWR, ENCFF807MUK 3339905451 ENCODE Processing Pipeline f6dec8755f091f40f7c3b7e047fb3b01 https://www.encodeproject.org/files/ENCFF290VXO/@@download/ENCFF290VXO.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF311MHB bam alignments ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 100 ENCFF224KMR, ENCFF423ZOG, ENCFF807MUK 3412051633 ENCODE Processing Pipeline 81f9543b40553cbcc7758c4ac04ba22d https://www.encodeproject.org/files/ENCFF311MHB/@@download/ENCFF311MHB.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF000PLQ bam alignments ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PMF 1602336571 Richard Myers, HAIB 390408e7a868d785477c23fa0927ded1 https://www.encodeproject.org/files/ENCFF000PLQ/@@download/ENCFF000PLQ.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PLR bam alignments ENCSR000BVM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PMC 1004152303 Richard Myers, HAIB a5f4ba96de327ef2300af0df76de6ce3 https://www.encodeproject.org/files/ENCFF000PLR/@@download/ENCFF000PLR.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF096MNC bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGM, ENCFF807MUK 248722652 ENCODE Processing Pipeline c5b057e54987a9407938f3bb2c3ca6f5 https://www.encodeproject.org/files/ENCFF096MNC/@@download/ENCFF096MNC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF755XST bam alignments ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGQ, ENCFF807MUK 394222968 ENCODE Processing Pipeline e648160fc8cf074a78976c06fd4c90b8 https://www.encodeproject.org/files/ENCFF755XST/@@download/ENCFF755XST.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QPO bam alignments ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPX 885136816 Richard Myers, HAIB 952a35d245b4a62f8f92fa7f0a4aa92b https://www.encodeproject.org/files/ENCFF000QPO/@@download/ENCFF000QPO.bam hg19 released biological replicates with identical biosample ENCFF000QPS bam alignments ENCSR000BTQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QQA 1145479223 Richard Myers, HAIB 0a0a63503d100eb3e195dc72c2dc2f4b https://www.encodeproject.org/files/ENCFF000QPS/@@download/ENCFF000QPS.bam hg19 released biological replicates with identical biosample ENCFF000XKV bam alignments ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XLE 1300160128 Kevin Struhl, HMS e112b22905746e3922a34d4d75b89a1a https://www.encodeproject.org/files/ENCFF000XKV/@@download/ENCFF000XKV.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XKZ bam alignments ENCSR000DNU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XLI 1280145649 Kevin Struhl, HMS 965abbf69a89b7a21a631351c988aba1 https://www.encodeproject.org/files/ENCFF000XKZ/@@download/ENCFF000XKZ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000QQR bam alignments ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QRE 1993852894 Richard Myers, HAIB c41444feae09fb421b991db1a02582fb https://www.encodeproject.org/files/ENCFF000QQR/@@download/ENCFF000QQR.bam hg19 released biological replicates with identical biosample ENCFF000QQV bam alignments ENCSR000BVA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QRH 2063550511 Richard Myers, HAIB 4fb040726431ffcb47dc8a2cc558dc0b https://www.encodeproject.org/files/ENCFF000QQV/@@download/ENCFF000QQV.bam hg19 released biological replicates with identical biosample ENCFF770MRP bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RGV, ENCFF807MUK 713855007 ENCODE Processing Pipeline c2eb752fe5783c66a214f6bd64fbfd25 https://www.encodeproject.org/files/ENCFF770MRP/@@download/ENCFF770MRP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF374UFJ bam alignments ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RGY, ENCFF807MUK 1029550955 ENCODE Processing Pipeline 073a44dafbc2800c41da127dc15b1860 https://www.encodeproject.org/files/ENCFF374UFJ/@@download/ENCFF374UFJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF352NJI bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PFJ, ENCFF807MUK 472079210 ENCODE Processing Pipeline fc5d57bceea5450b2f09ab7f9381b51b https://www.encodeproject.org/files/ENCFF352NJI/@@download/ENCFF352NJI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF654DIS bam alignments ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PFL, ENCFF807MUK 712116205 ENCODE Processing Pipeline f1ecfcf0a544a79d292ed79094b179d2 https://www.encodeproject.org/files/ENCFF654DIS/@@download/ENCFF654DIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF353LOM bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YID, ENCFF807MUK 630657167 ENCODE Processing Pipeline 75e46c63419d3254121106b62f82276b https://www.encodeproject.org/files/ENCFF353LOM/@@download/ENCFF353LOM.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF059XPJ bam alignments ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YIC, ENCFF807MUK 774450170 ENCODE Processing Pipeline e075cc65f9ae4e7036f8aa1afa7307a4 https://www.encodeproject.org/files/ENCFF059XPJ/@@download/ENCFF059XPJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF120JUM bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YOO, ENCFF807MUK 573500407 ENCODE Processing Pipeline bd09f0c0798000d350ec5272f95fc614 https://www.encodeproject.org/files/ENCFF120JUM/@@download/ENCFF120JUM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF698GEX bam alignments ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YOM, ENCFF807MUK 811119361 ENCODE Processing Pipeline 66906a4f30561d0155ca35e9f45a9aae https://www.encodeproject.org/files/ENCFF698GEX/@@download/ENCFF698GEX.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF573AFD bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPB, ENCFF807MUK 316755688 ENCODE Processing Pipeline efdf0a88ac53a41e74580da63d6fd871 https://www.encodeproject.org/files/ENCFF573AFD/@@download/ENCFF573AFD.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278VAK bam alignments ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPD, ENCFF807MUK 326296803 ENCODE Processing Pipeline 855ff33490dec4a0bbdeeb84b740385a https://www.encodeproject.org/files/ENCFF278VAK/@@download/ENCFF278VAK.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF946QHS bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 100 ENCFF681PIN, ENCFF760LCQ, ENCFF807MUK 5237217688 ENCODE Processing Pipeline 332940efc9d891bd23175438c4ea6f38 https://www.encodeproject.org/files/ENCFF946QHS/@@download/ENCFF946QHS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF926NTQ bam alignments ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 100 ENCFF301GRJ, ENCFF671VDI, ENCFF807MUK 4941656595 ENCODE Processing Pipeline e29dc92d9c3ed4ab2b3796d531643f0f https://www.encodeproject.org/files/ENCFF926NTQ/@@download/ENCFF926NTQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF000XHK bam alignments ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XHZ 319839452 Sherman Weissman, Yale 9847b632d16de4f90b5c04c3c36b018e https://www.encodeproject.org/files/ENCFF000XHK/@@download/ENCFF000XHK.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XHL bam alignments ENCSR000EZF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XHY 295728292 Sherman Weissman, Yale 749e17b7bc9ae22a22b6261f8c5bda49 https://www.encodeproject.org/files/ENCFF000XHL/@@download/ENCFF000XHL.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF904GCT bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YSC, ENCFF807MUK 605438872 ENCODE Processing Pipeline 4a07762085c9b08727f7ef525be97716 https://www.encodeproject.org/files/ENCFF904GCT/@@download/ENCFF904GCT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF532IBJ bam alignments ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YSE, ENCFF807MUK 983873092 ENCODE Processing Pipeline cf48332cf63a44f7cb9ae94683c55485 https://www.encodeproject.org/files/ENCFF532IBJ/@@download/ENCFF532IBJ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF723SME bam alignments ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 76 ENCFF469MGV, ENCFF807MUK, ENCFF943NVH 1738930305 ENCODE Processing Pipeline af21953729a669ab04245053fdedca9d https://www.encodeproject.org/files/ENCFF723SME/@@download/ENCFF723SME.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF000YFX bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YGF 731339968 Kevin Struhl, HMS d49ce28e0bd1bfcd683d946548f6ffa3 https://www.encodeproject.org/files/ENCFF000YFX/@@download/ENCFF000YFX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFY bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YGH 805597756 Kevin Struhl, HMS 4a9ff97cf0c0c9af4c9b4944d28948fd https://www.encodeproject.org/files/ENCFF000YFY/@@download/ENCFF000YFY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YGB bam alignments ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YGI 783793273 Kevin Struhl, HMS f181d0b9cbddb4b386f11696bcbc5d0b https://www.encodeproject.org/files/ENCFF000YGB/@@download/ENCFF000YGB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF249FIH bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 50 ENCFF002DHL, ENCFF807MUK 647656900 ENCODE Processing Pipeline e08861b7b0201ccaea0152ccd609d4fa https://www.encodeproject.org/files/ENCFF249FIH/@@download/ENCFF249FIH.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF019XCK bam alignments ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 50 ENCFF002DHM, ENCFF807MUK 1113793425 ENCODE Processing Pipeline 073e9d0bb61f9448824841d3a048f55e https://www.encodeproject.org/files/ENCFF019XCK/@@download/ENCFF019XCK.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF862SGN bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WSX, ENCFF807MUK 267517051 ENCODE Processing Pipeline 8c9cd6ad075b47b97b4c3a8615c3bcaa https://www.encodeproject.org/files/ENCFF862SGN/@@download/ENCFF862SGN.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF436RQJ bam alignments ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WTC, ENCFF807MUK 249536211 ENCODE Processing Pipeline cb8ea9065fe8c184d32bfd5ae5b9cb7a https://www.encodeproject.org/files/ENCFF436RQJ/@@download/ENCFF436RQJ.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF941CFE bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OFJ, ENCFF807MUK 367145102 ENCODE Processing Pipeline 33c6f4dd9a1fba2f0af6b08cd389d665 https://www.encodeproject.org/files/ENCFF941CFE/@@download/ENCFF941CFE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF059RHP bam alignments ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OFL, ENCFF807MUK 491787371 ENCODE Processing Pipeline 6b527a9b9959e6ba53107a29076f6443 https://www.encodeproject.org/files/ENCFF059RHP/@@download/ENCFF059RHP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF473DTA bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 76 ENCFF550QWK, ENCFF807MUK 1252564511 ENCODE Processing Pipeline 7067873cf874024c2962a637e2166219 https://www.encodeproject.org/files/ENCFF473DTA/@@download/ENCFF473DTA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF630CIO bam alignments ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 76 ENCFF362DJJ, ENCFF807MUK 1551661424 ENCODE Processing Pipeline f70382bd96b8ecf1edec15f27f60d4da https://www.encodeproject.org/files/ENCFF630CIO/@@download/ENCFF630CIO.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF343RXC bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOO, ENCFF807MUK 633583844 ENCODE Processing Pipeline 73a52bdcd92699ba4118a5e17dc7a82d https://www.encodeproject.org/files/ENCFF343RXC/@@download/ENCFF343RXC.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF998VOK bam alignments ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OOH, ENCFF807MUK 675646426 ENCODE Processing Pipeline f78b99c58fba62452c8188d470674c32 https://www.encodeproject.org/files/ENCFF998VOK/@@download/ENCFF998VOK.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF459ELU bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 36 ENCFF002ECG, ENCFF807MUK 640026456 ENCODE Processing Pipeline 9d73dc4b16391b8d35c48a6b7fe74dfe https://www.encodeproject.org/files/ENCFF459ELU/@@download/ENCFF459ELU.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF222SPO bam alignments ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 36 ENCFF002ECJ, ENCFF807MUK 744308273 ENCODE Processing Pipeline 92a4216ff007138e20cc7b662990915b https://www.encodeproject.org/files/ENCFF222SPO/@@download/ENCFF222SPO.bam hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF889DFX bam alignments ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF180UGD, ENCFF411THN, ENCFF807MUK 4623774217 ENCODE Processing Pipeline db75ec542c3b34eb0dcf305293cf0496 https://www.encodeproject.org/files/ENCFF889DFX/@@download/ENCFF889DFX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF943CTI bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 27 ENCFF000YIP, ENCFF807MUK 293552316 ENCODE Processing Pipeline 0c9414756feae2424afe7b0ceb73e7ad https://www.encodeproject.org/files/ENCFF943CTI/@@download/ENCFF943CTI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF892MVR bam alignments ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 27 ENCFF000YIR, ENCFF807MUK 322930574 ENCODE Processing Pipeline 10514b60f5329e7a0f1d1c86d9b356b8 https://www.encodeproject.org/files/ENCFF892MVR/@@download/ENCFF892MVR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000RNV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000ROC 1430203113 Vishwanath Iyer, UTA 71a497bc1a22eac42bbbd1ff27247a7c https://www.encodeproject.org/files/ENCFF000RNV/@@download/ENCFF000RNV.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF000RNX bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000ROA 801669080 Vishwanath Iyer, UTA 15a25d31d3828d65104b57e138d1b54f https://www.encodeproject.org/files/ENCFF000RNX/@@download/ENCFF000RNX.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF892JNF bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000ROA, ENCFF807MUK 579371130 ENCODE Processing Pipeline 6a645826a383f58143e343bc46b29a06 https://www.encodeproject.org/files/ENCFF892JNF/@@download/ENCFF892JNF.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF719PSV bam alignments ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROC, ENCFF807MUK 1014418658 ENCODE Processing Pipeline 0dfa6c6ebaff8763e8dd8eb400eb8b8c https://www.encodeproject.org/files/ENCFF719PSV/@@download/ENCFF719PSV.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF093JMK bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBR, ENCFF807MUK 432137378 ENCODE Processing Pipeline 0f1a8b5d89dc70e641a9092b512ca317 https://www.encodeproject.org/files/ENCFF093JMK/@@download/ENCFF093JMK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF613ODZ bam alignments ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZBX, ENCFF807MUK 686768406 ENCODE Processing Pipeline 79b802532ad294fd5559acb94ff086f1 https://www.encodeproject.org/files/ENCFF613ODZ/@@download/ENCFF613ODZ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF428FLU bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RDL, ENCFF807MUK 773609465 ENCODE Processing Pipeline 5931ef27efe32f7ff6c7f6a644fb010f https://www.encodeproject.org/files/ENCFF428FLU/@@download/ENCFF428FLU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF025UDZ bam alignments ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RDJ, ENCFF807MUK 570559668 ENCODE Processing Pipeline 6050896718b9a223558d571659ab527c https://www.encodeproject.org/files/ENCFF025UDZ/@@download/ENCFF025UDZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF000XDL bam alignments ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XDR 506277557 Michael Snyder, Stanford cb45e291a64a1ae2eb65f8acc4cd5127 https://www.encodeproject.org/files/ENCFF000XDL/@@download/ENCFF000XDL.bam hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF000XDM bam alignments ENCSR000ECI ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XDT 639532050 Michael Snyder, Stanford 53ee837f6a22a3998b823f1798820cc2 https://www.encodeproject.org/files/ENCFF000XDM/@@download/ENCFF000XDM.bam hg19 released low read length biological replicates with identical biosample, duplicate lane review ENCFF339PKZ bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZHA, ENCFF807MUK 421759220 ENCODE Processing Pipeline d2c0ab594ed1a489e15eedebdaf004d8 https://www.encodeproject.org/files/ENCFF339PKZ/@@download/ENCFF339PKZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF495TVZ bam alignments ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZHC, ENCFF807MUK 629531284 ENCODE Processing Pipeline 266b8a214c8302c68e1627ec744f25e5 https://www.encodeproject.org/files/ENCFF495TVZ/@@download/ENCFF495TVZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF225TLR bam alignments ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF389XGF, ENCFF807MUK, ENCFF899YPM 3451290923 ENCODE Processing Pipeline ac51959a21472eb66c1e427ec9487323 https://www.encodeproject.org/files/ENCFF225TLR/@@download/ENCFF225TLR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XJO bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJP 310033249 Sherman Weissman, Yale be81e631d0d8237888fea03e8dc1940b https://www.encodeproject.org/files/ENCFF000XJO/@@download/ENCFF000XJO.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJU bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJS 440543566 Sherman Weissman, Yale 54505d34f9644164e56565c109b16f95 https://www.encodeproject.org/files/ENCFF000XJU/@@download/ENCFF000XJU.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XJV bam alignments ENCSR000EZL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XKD 416825883 Sherman Weissman, Yale 147797901033b8f15ff6e6e19e45b831 https://www.encodeproject.org/files/ENCFF000XJV/@@download/ENCFF000XJV.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF508ZDE bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 50 ENCFF591FKI, ENCFF763BLG, ENCFF807MUK 1320069612 ENCODE Processing Pipeline d14b8113c8f486873823a046df5cc8b0 https://www.encodeproject.org/files/ENCFF508ZDE/@@download/ENCFF508ZDE.bam hg19 released missing genetic modification characterization ENCFF473TXL bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 50 ENCFF369FNW, ENCFF489GQR, ENCFF807MUK 1600592530 ENCODE Processing Pipeline b6f4dad460cf4cd0bdaae464b62ec521 https://www.encodeproject.org/files/ENCFF473TXL/@@download/ENCFF473TXL.bam hg19 released missing genetic modification characterization ENCFF532EKD bam alignments ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 5581717446 Sunduz Keles, UW-M 3d943fe25fafbe60370480fe56ceecc6 https://www.encodeproject.org/files/ENCFF532EKD/@@download/ENCFF532EKD.bam hg19 released missing genetic modification characterization missing derived_from ENCFF937OBB bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WWI, ENCFF807MUK 788220396 ENCODE Processing Pipeline 1cbb397e0054bca414ca80ac00683b6d https://www.encodeproject.org/files/ENCFF937OBB/@@download/ENCFF937OBB.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF338MLT bam alignments ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WWK, ENCFF807MUK 730578539 ENCODE Processing Pipeline 92499164ff6c2f11084e4f1d447f0258 https://www.encodeproject.org/files/ENCFF338MLT/@@download/ENCFF338MLT.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF102ROD bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEW, ENCFF807MUK 388976164 ENCODE Processing Pipeline 0049531f2ea1d75cab8036b8e3e47ea6 https://www.encodeproject.org/files/ENCFF102ROD/@@download/ENCFF102ROD.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF992ORW bam alignments ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEU, ENCFF807MUK 789468149 ENCODE Processing Pipeline 7c69ea5f4bd02208a85eb420054f93a4 https://www.encodeproject.org/files/ENCFF992ORW/@@download/ENCFF992ORW.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF171VRI bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HYG, ENCFF807MUK 463532158 ENCODE Processing Pipeline b2a4684d57d6f3759a9ec092726b9bf1 https://www.encodeproject.org/files/ENCFF171VRI/@@download/ENCFF171VRI.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF025QGP bam alignments ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HYR, ENCFF807MUK 564977367 ENCODE Processing Pipeline 534fd6ef10a4a8fc6212d2d41d6c429d https://www.encodeproject.org/files/ENCFF025QGP/@@download/ENCFF025QGP.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF944UGX bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVP, ENCFF807MUK 511011181 ENCODE Processing Pipeline 6c73028c19d1c442089fdc207f3a1b8b https://www.encodeproject.org/files/ENCFF944UGX/@@download/ENCFF944UGX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF381JSU bam alignments ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVN, ENCFF807MUK 402231416 ENCODE Processing Pipeline 0ad71624e619712962e90161d47b7b97 https://www.encodeproject.org/files/ENCFF381JSU/@@download/ENCFF381JSU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF860REV bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 100 ENCFF277CCO, ENCFF529BRM, ENCFF807MUK 3235888168 ENCODE Processing Pipeline d59992f3f536c1b6f3fb1ac5a6415cbe https://www.encodeproject.org/files/ENCFF860REV/@@download/ENCFF860REV.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF400FDW bam alignments ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 100 ENCFF349DXW, ENCFF660MJG, ENCFF807MUK 4096252330 ENCODE Processing Pipeline 0f488a08976baae851e5279618817f3b https://www.encodeproject.org/files/ENCFF400FDW/@@download/ENCFF400FDW.bam hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF654OKM bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 36 ENCFF002AVL, ENCFF094ZYW, ENCFF266OUT, ENCFF807MUK 936543604 ENCODE Processing Pipeline 48465a36e6ba76f70e5a84945af1cba9 https://www.encodeproject.org/files/ENCFF654OKM/@@download/ENCFF654OKM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF342MWY bam alignments ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 36 ENCFF002AVW, ENCFF562LZL, ENCFF690GSP, ENCFF807MUK 1148816369 ENCODE Processing Pipeline 18e2023e55163bb8a590aaf234351c11 https://www.encodeproject.org/files/ENCFF342MWY/@@download/ENCFF342MWY.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF000XBR bam alignments ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XCG 246697620 Sherman Weissman, Yale 7460ca495f4a92d1b0ad7bfd16b19502 https://www.encodeproject.org/files/ENCFF000XBR/@@download/ENCFF000XBR.bam hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000XBS bam alignments ENCSR000EZE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XCF 253326242 Sherman Weissman, Yale d71cb1c0104aeb6524b278b0e0258d51 https://www.encodeproject.org/files/ENCFF000XBS/@@download/ENCFF000XBS.bam hg19 released inconsistent platforms duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF340SPV bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WQV, ENCFF807MUK 734668982 ENCODE Processing Pipeline 1c516d4d08bbc8181eadc52027e29b27 https://www.encodeproject.org/files/ENCFF340SPV/@@download/ENCFF340SPV.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF932MOL bam alignments ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WQT, ENCFF807MUK 1059136161 ENCODE Processing Pipeline 7453a71446568e23c985b9f1ba6d5954 https://www.encodeproject.org/files/ENCFF932MOL/@@download/ENCFF932MOL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF133FDG bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 100 ENCFF807MUK, ENCFF871SUI, ENCFF921VOK 4310439932 ENCODE Processing Pipeline cbbad4454ca2f3ac94e5f8c7b02c9dbd https://www.encodeproject.org/files/ENCFF133FDG/@@download/ENCFF133FDG.bam hg19 released ENCFF394VWK bam alignments ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 100 ENCFF292YNE, ENCFF755HHM, ENCFF807MUK 4932420553 ENCODE Processing Pipeline 1084c4c34861c017d624754d324b4348 https://www.encodeproject.org/files/ENCFF394VWK/@@download/ENCFF394VWK.bam hg19 released ENCFF000SBL bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000SBV 1156693328 Vishwanath Iyer, UTA 208a3ff0a4619915aaebf0b998ae8025 https://www.encodeproject.org/files/ENCFF000SBL/@@download/ENCFF000SBL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000SBN bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000SBY 1160510961 Vishwanath Iyer, UTA 5403f8985ceabd75ddd990ed69a290a7 https://www.encodeproject.org/files/ENCFF000SBN/@@download/ENCFF000SBN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF919XJD bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBV, ENCFF807MUK 759281811 ENCODE Processing Pipeline 71d63abb46ecac08b01eae470ac82193 https://www.encodeproject.org/files/ENCFF919XJD/@@download/ENCFF919XJD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF346BSA bam alignments ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBY, ENCFF807MUK 810626837 ENCODE Processing Pipeline e1071a5c9cdfbf34a6d47e2fe7d7b7fc https://www.encodeproject.org/files/ENCFF346BSA/@@download/ENCFF346BSA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF767ZGM bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GZX, ENCFF807MUK 357172698 ENCODE Processing Pipeline 4ed11c3f2aaf832ae034e4bbdd6b10c6 https://www.encodeproject.org/files/ENCFF767ZGM/@@download/ENCFF767ZGM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF217JMI bam alignments ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GZW, ENCFF807MUK 472727136 ENCODE Processing Pipeline dbe7f76a5d0690508d13e45c8f2d7521 https://www.encodeproject.org/files/ENCFF217JMI/@@download/ENCFF217JMI.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF000RDM bam alignments ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REA 1453012489 Richard Myers, HAIB 491032f3d0f9719f8b91cb7051649b93 https://www.encodeproject.org/files/ENCFF000RDM/@@download/ENCFF000RDM.bam hg19 released biological replicates with identical biosample ENCFF000RDP bam alignments ENCSR000BSL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REF 2512975078 Richard Myers, HAIB a7ad19d28432424b5bbc2609d244760b https://www.encodeproject.org/files/ENCFF000RDP/@@download/ENCFF000RDP.bam hg19 released biological replicates with identical biosample ENCFF276KQJ bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTS, ENCFF807MUK 710120009 ENCODE Processing Pipeline 10c3ccb031661a8ab100e1cf4c895bad https://www.encodeproject.org/files/ENCFF276KQJ/@@download/ENCFF276KQJ.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF797QYH bam alignments ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTV, ENCFF807MUK 1022192467 ENCODE Processing Pipeline 52e7eef633f862b9d2d4b190b1a81c9b https://www.encodeproject.org/files/ENCFF797QYH/@@download/ENCFF797QYH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF989OXT bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 76 ENCFF137VYP, ENCFF807MUK 516265478 ENCODE Processing Pipeline 9f9e91ef1d179748ba1dab513bbcd3c3 https://www.encodeproject.org/files/ENCFF989OXT/@@download/ENCFF989OXT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF506SFP bam alignments ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 76 ENCFF807MUK, ENCFF968YZD 1634078488 ENCODE Processing Pipeline ace5ba55325a82f3be0dcfbd75e41206 https://www.encodeproject.org/files/ENCFF506SFP/@@download/ENCFF506SFP.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF751ATX bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YFP, ENCFF807MUK 591773013 ENCODE Processing Pipeline 7ec0030e9fa7e9a915ec86da5a4e2764 https://www.encodeproject.org/files/ENCFF751ATX/@@download/ENCFF751ATX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF866OHV bam alignments ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YFR, ENCFF807MUK 948039971 ENCODE Processing Pipeline 54478e01f236d3e032539bcb2bf50fe8 https://www.encodeproject.org/files/ENCFF866OHV/@@download/ENCFF866OHV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285FIN bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 36 ENCFF220HNB, ENCFF807MUK 733622325 ENCODE Processing Pipeline 8caab0ce4962611db36b3600b1ee9430 https://www.encodeproject.org/files/ENCFF285FIN/@@download/ENCFF285FIN.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF086MCV bam alignments ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 36 ENCFF503DAG, ENCFF807MUK, ENCFF935HUK 1436976772 ENCODE Processing Pipeline d612d8b194ecc226811eff07bd8fef91 https://www.encodeproject.org/files/ENCFF086MCV/@@download/ENCFF086MCV.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF235NOS bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WRL, ENCFF807MUK 720194144 ENCODE Processing Pipeline 433a2cd696db256b7fcd0bed1a43a0f0 https://www.encodeproject.org/files/ENCFF235NOS/@@download/ENCFF235NOS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF439HHQ bam alignments ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WRJ, ENCFF807MUK 920765077 ENCODE Processing Pipeline 53cb9652242ff1a409b18fd953ee7ef1 https://www.encodeproject.org/files/ENCFF439HHQ/@@download/ENCFF439HHQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF875HFU bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 100 ENCFF349FIQ, ENCFF807MUK, ENCFF845FIV 3821353751 ENCODE Processing Pipeline 2cef74bfbe9c61120273fcee9457e24d https://www.encodeproject.org/files/ENCFF875HFU/@@download/ENCFF875HFU.bam hg19 released ENCFF666BDF bam alignments ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 100 ENCFF776VEC, ENCFF807MUK, ENCFF824ADC 4897300583 ENCODE Processing Pipeline 1946aa897e52402d73ec120ae8cc9b81 https://www.encodeproject.org/files/ENCFF666BDF/@@download/ENCFF666BDF.bam hg19 released ENCFF174RPU bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQB, ENCFF807MUK 818920250 ENCODE Processing Pipeline 94e06bac69cb0f2f47e531f6fd1ae275 https://www.encodeproject.org/files/ENCFF174RPU/@@download/ENCFF174RPU.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF011EEZ bam alignments ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VPZ, ENCFF807MUK 876979463 ENCODE Processing Pipeline 264671d52ef1bd11f210d97cb5ce98b1 https://www.encodeproject.org/files/ENCFF011EEZ/@@download/ENCFF011EEZ.bam hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF772BCU bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GYV, ENCFF807MUK 292749452 ENCODE Processing Pipeline 70bca105a16ff353dec17e9df49409ea https://www.encodeproject.org/files/ENCFF772BCU/@@download/ENCFF772BCU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF281JOP bam alignments ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GYX, ENCFF807MUK 1039218700 ENCODE Processing Pipeline 681b71a3993f30578636740a9a19b141 https://www.encodeproject.org/files/ENCFF281JOP/@@download/ENCFF281JOP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF000WJH bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WJR 407583718 Michael Snyder, Stanford 825f4fd0307d9645eef6902741460f3e https://www.encodeproject.org/files/ENCFF000WJH/@@download/ENCFF000WJH.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJI bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WJY 546694790 Michael Snyder, Stanford a348bdaff509041b48c84880dda55374 https://www.encodeproject.org/files/ENCFF000WJI/@@download/ENCFF000WJI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJJ bam alignments ENCSR000EAM ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WJQ 242380028 Michael Snyder, Stanford 07589049f9e3994361c1a6bf9920aa3d https://www.encodeproject.org/files/ENCFF000WJJ/@@download/ENCFF000WJJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF117FPW bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OMV, ENCFF807MUK 301779720 ENCODE Processing Pipeline 6a79367406bc2da08e03e61ed9fd707a https://www.encodeproject.org/files/ENCFF117FPW/@@download/ENCFF117FPW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF266SYC bam alignments ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OMW, ENCFF807MUK 417140336 ENCODE Processing Pipeline 84c3f490633ad3f3059cc905139bc43e https://www.encodeproject.org/files/ENCFF266SYC/@@download/ENCFF266SYC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF318TVO bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YXN, ENCFF807MUK 338404825 ENCODE Processing Pipeline 2d669697d9a2cccdcba5cd1b27142660 https://www.encodeproject.org/files/ENCFF318TVO/@@download/ENCFF318TVO.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371LNT bam alignments ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YXO, ENCFF807MUK 319233695 ENCODE Processing Pipeline ae5ae9e30fb3b363871bff74ffada4dc https://www.encodeproject.org/files/ENCFF371LNT/@@download/ENCFF371LNT.bam hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF270WBP bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YDI, ENCFF807MUK 761022508 ENCODE Processing Pipeline dbb0060b21c74015552cd48c784dd43a https://www.encodeproject.org/files/ENCFF270WBP/@@download/ENCFF270WBP.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF865LAP bam alignments ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YDG, ENCFF807MUK 609099747 ENCODE Processing Pipeline ad784c84d325e2dc12374ad7e6a47ca5 https://www.encodeproject.org/files/ENCFF865LAP/@@download/ENCFF865LAP.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF423HKM bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WFJ, ENCFF807MUK 566953412 ENCODE Processing Pipeline ae3d88ed9efdaced69ef9f81553b8cf9 https://www.encodeproject.org/files/ENCFF423HKM/@@download/ENCFF423HKM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416FSY bam alignments ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WFK, ENCFF807MUK 613305456 ENCODE Processing Pipeline dd418e75cf6c5ffa472ba58936de1ebb https://www.encodeproject.org/files/ENCFF416FSY/@@download/ENCFF416FSY.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XMW bam alignments ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNG 1319205593 Kevin Struhl, HMS b9d2201a99bcb195f209e09b7fb1ad67 https://www.encodeproject.org/files/ENCFF000XMW/@@download/ENCFF000XMW.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XMX bam alignments ENCSR000DNY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF3C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNH 1356831417 Kevin Struhl, HMS b64d315af0033241dc72d36b01436e76 https://www.encodeproject.org/files/ENCFF000XMX/@@download/ENCFF000XMX.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000YFJ bam alignments ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YFV 557957429 Kevin Struhl, HMS dd41a5025c35d54529d541b2b0f2ba4c https://www.encodeproject.org/files/ENCFF000YFJ/@@download/ENCFF000YFJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YFM bam alignments ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YFW 884050408 Kevin Struhl, HMS 41290ca31331cf440a7df44690d6b903 https://www.encodeproject.org/files/ENCFF000YFM/@@download/ENCFF000YFM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF362YKT bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PNI, ENCFF807MUK 697739276 ENCODE Processing Pipeline cd21f8ac416b1697a1c41339b6efbcd9 https://www.encodeproject.org/files/ENCFF362YKT/@@download/ENCFF362YKT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF090TEI bam alignments ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PNL, ENCFF807MUK 1195817983 ENCODE Processing Pipeline 3b4939e848e1b44ae7f5b0dfce5689e3 https://www.encodeproject.org/files/ENCFF090TEI/@@download/ENCFF090TEI.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF735DEG bam alignments ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BQY, ENCFF000BRD, ENCFF000BRG, ENCFF807MUK 451873033 ENCODE Processing Pipeline ea98278e719328b0d7a7e9d653ab976e https://www.encodeproject.org/files/ENCFF735DEG/@@download/ENCFF735DEG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF360WOG bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HHL, ENCFF807MUK 273209071 ENCODE Processing Pipeline 366ace0d13cb46a01acbc26fbf3dbcda https://www.encodeproject.org/files/ENCFF360WOG/@@download/ENCFF360WOG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF913KQZ bam alignments ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HHM, ENCFF807MUK 458821300 ENCODE Processing Pipeline 275d438e1d4b393056993e4a978b5b7a https://www.encodeproject.org/files/ENCFF913KQZ/@@download/ENCFF913KQZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF180HYH bam alignments ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CAK, ENCFF807MUK 1118692408 ENCODE Processing Pipeline da68fc5067d52bb5cc85e3d485634a02 https://www.encodeproject.org/files/ENCFF180HYH/@@download/ENCFF180HYH.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF549FFR bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYK, ENCFF807MUK 470964396 ENCODE Processing Pipeline 114d6ca233ae105f66a9e7cfce0432c5 https://www.encodeproject.org/files/ENCFF549FFR/@@download/ENCFF549FFR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF892PZK bam alignments ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYN, ENCFF807MUK 515481333 ENCODE Processing Pipeline 9788117fc415cf1e9e720205efce13c2 https://www.encodeproject.org/files/ENCFF892PZK/@@download/ENCFF892PZK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF541YJQ bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YQK, ENCFF807MUK 433740354 ENCODE Processing Pipeline 440ee47a4f521ddf14298b9bf6766603 https://www.encodeproject.org/files/ENCFF541YJQ/@@download/ENCFF541YJQ.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF752FZP bam alignments ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YQL, ENCFF807MUK 464229968 ENCODE Processing Pipeline 82f88e8d5e70b50ecb5a0410ddae3360 https://www.encodeproject.org/files/ENCFF752FZP/@@download/ENCFF752FZP.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF622IZB bam alignments ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF239LFN, ENCFF527SCA, ENCFF807MUK 4151295077 ENCODE Processing Pipeline f9b10bdc8a5a9638d2b29c857ad74dad https://www.encodeproject.org/files/ENCFF622IZB/@@download/ENCFF622IZB.bam hg19 released antibody characterized with exemption ENCFF000WPW bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WQF 182529265 Michael Snyder, Stanford 921e637680fe056cdd3b7416377a11fb https://www.encodeproject.org/files/ENCFF000WPW/@@download/ENCFF000WPW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPX bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WQM 746674848 Michael Snyder, Stanford 55fced8ec54055c170352fe83a56ab06 https://www.encodeproject.org/files/ENCFF000WPX/@@download/ENCFF000WPX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WPY bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WQJ 167800708 Michael Snyder, Stanford c864634ad6de520e5f3ffd39de3bedb8 https://www.encodeproject.org/files/ENCFF000WPY/@@download/ENCFF000WPY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WQA bam alignments ENCSR000EBK ChIP-seq EFO:0005351 GM19193 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WRO 623715253 Michael Snyder, Stanford 7177cce2cf52d964c1ce8d11b60483c5 https://www.encodeproject.org/files/ENCFF000WQA/@@download/ENCFF000WQA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF985JPM bam alignments ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 100 ENCFF379BKC, ENCFF572PHT, ENCFF807MUK 2201956119 ENCODE Processing Pipeline 69ca361ed14b76e888106d0894d0fea6 https://www.encodeproject.org/files/ENCFF985JPM/@@download/ENCFF985JPM.bam hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF001HTC bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTO 707533446 John Stamatoyannopoulos, UW 47b33c89d7dcc58067550c7c28796794 https://www.encodeproject.org/files/ENCFF001HTC/@@download/ENCFF001HTC.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF001HTD bam alignments ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTP 502580289 John Stamatoyannopoulos, UW 104368a2b940985778cd70e72a83005a https://www.encodeproject.org/files/ENCFF001HTD/@@download/ENCFF001HTD.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF164TSL bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUY, ENCFF807MUK 693109877 ENCODE Processing Pipeline 87581e2f77909f8db89dfbac2b2f9b3d https://www.encodeproject.org/files/ENCFF164TSL/@@download/ENCFF164TSL.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF551AQK bam alignments ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VVA, ENCFF807MUK 678769539 ENCODE Processing Pipeline 0204e0a3d6c9bc4eae742e9db7db2120 https://www.encodeproject.org/files/ENCFF551AQK/@@download/ENCFF551AQK.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF771TCH bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIT, ENCFF807MUK 305723292 ENCODE Processing Pipeline 0c037da151b1947d7cad7bfdf361c4b5 https://www.encodeproject.org/files/ENCFF771TCH/@@download/ENCFF771TCH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF194PQZ bam alignments ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIX, ENCFF807MUK 1155280736 ENCODE Processing Pipeline f07273c0f0242afcfc7c704551c4a16a https://www.encodeproject.org/files/ENCFF194PQZ/@@download/ENCFF194PQZ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF879ZRP bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 36 ENCFF002DZW, ENCFF807MUK 873291636 ENCODE Processing Pipeline 046822623f362c2abea275a7a1f0ac36 https://www.encodeproject.org/files/ENCFF879ZRP/@@download/ENCFF879ZRP.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF930GJB bam alignments ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 3 36 ENCFF002DZX, ENCFF807MUK 966566002 ENCODE Processing Pipeline da2b0e9c3ee5ae64d1d1af857a69abf6 https://www.encodeproject.org/files/ENCFF930GJB/@@download/ENCFF930GJB.bam hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF000QNL bam alignments ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOA 1930843307 Richard Myers, HAIB 09dcdf9ab4d7b241ac5b8e4376a871cc https://www.encodeproject.org/files/ENCFF000QNL/@@download/ENCFF000QNL.bam hg19 released biological replicates with identical biosample ENCFF000QNO bam alignments ENCSR000BTP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNY 1481040808 Richard Myers, HAIB 2bde7bc17811a1fc62ec163c5d3a2660 https://www.encodeproject.org/files/ENCFF000QNO/@@download/ENCFF000QNO.bam hg19 released biological replicates with identical biosample ENCFF000VSZ bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VTF 166650477 Sherman Weissman, Yale b93933f5ceee4605905d947a4681879d https://www.encodeproject.org/files/ENCFF000VSZ/@@download/ENCFF000VSZ.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTA bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VTG 199889923 Sherman Weissman, Yale 1d61b5fa31af4d4d667eb764a3e48f9a https://www.encodeproject.org/files/ENCFF000VTA/@@download/ENCFF000VTA.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000VTB bam alignments ENCSR000EYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000VTH 211824862 Sherman Weissman, Yale 58f0541782636fa253236fbf6d133068 https://www.encodeproject.org/files/ENCFF000VTB/@@download/ENCFF000VTB.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF278YTL bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QHU, ENCFF807MUK 169579468 ENCODE Processing Pipeline e729cbbe8493c22a8e7f8c0917da18c8 https://www.encodeproject.org/files/ENCFF278YTL/@@download/ENCFF278YTL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF077WPD bam alignments ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QHW, ENCFF807MUK 204909369 ENCODE Processing Pipeline 2c5284c9d80429fa4d8a06063ea865f5 https://www.encodeproject.org/files/ENCFF077WPD/@@download/ENCFF077WPD.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF474UIC bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BAS, ENCFF807MUK 625573538 ENCODE Processing Pipeline 0f29df98bbd9691d08705739119163c3 https://www.encodeproject.org/files/ENCFF474UIC/@@download/ENCFF474UIC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF163WNN bam alignments ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BAT, ENCFF807MUK 782625609 ENCODE Processing Pipeline 88d57d7e279232f514ee881fb8e63132 https://www.encodeproject.org/files/ENCFF163WNN/@@download/ENCFF163WNN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF728IVZ bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 28 ENCFF000WAO, ENCFF807MUK 561302040 ENCODE Processing Pipeline 81f456d2496187eb154be06a79a01f15 https://www.encodeproject.org/files/ENCFF728IVZ/@@download/ENCFF728IVZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF258NYC bam alignments ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 28 ENCFF000WAM, ENCFF807MUK 633682275 ENCODE Processing Pipeline 60318c2c1e13c8e8cb460e5c70f27dbc https://www.encodeproject.org/files/ENCFF258NYC/@@download/ENCFF258NYC.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF169ZIP bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VUL, ENCFF807MUK 735482157 ENCODE Processing Pipeline 23defd2ec4eee71976ac4af442f6d17f https://www.encodeproject.org/files/ENCFF169ZIP/@@download/ENCFF169ZIP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597JXK bam alignments ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VUJ, ENCFF807MUK 606881201 ENCODE Processing Pipeline d536306144f40671ca7b8c6467a0e209 https://www.encodeproject.org/files/ENCFF597JXK/@@download/ENCFF597JXK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF180NKF bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OHH, ENCFF807MUK 438673705 ENCODE Processing Pipeline 227ffc1b331aae4aca01d8712b9f8436 https://www.encodeproject.org/files/ENCFF180NKF/@@download/ENCFF180NKF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF004ZLO bam alignments ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OHO, ENCFF807MUK 633611087 ENCODE Processing Pipeline be07d469c7d4a64d93c44711a4787018 https://www.encodeproject.org/files/ENCFF004ZLO/@@download/ENCFF004ZLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001HOV bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPF 309461447 John Stamatoyannopoulos, UW 5a5681ee84f22d232ea8ffc9b4f3fc3d https://www.encodeproject.org/files/ENCFF001HOV/@@download/ENCFF001HOV.bam hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF340ENP bam alignments ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPF, ENCFF807MUK 403658180 ENCODE Processing Pipeline d64ddf99eb81ce369512be9fc150ba67 https://www.encodeproject.org/files/ENCFF340ENP/@@download/ENCFF340ENP.bam hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF872VKZ bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HNP, ENCFF807MUK 366712494 ENCODE Processing Pipeline 5c19359e49771e9b85549a2034de49a8 https://www.encodeproject.org/files/ENCFF872VKZ/@@download/ENCFF872VKZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF122HJS bam alignments ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNI, ENCFF807MUK 188862010 ENCODE Processing Pipeline 231bba4c0bcebee02a4a7734b9e3ca62 https://www.encodeproject.org/files/ENCFF122HJS/@@download/ENCFF122HJS.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF319HSK bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PHM, ENCFF807MUK 622207480 ENCODE Processing Pipeline 6fae728c3659535289b1138b2b666310 https://www.encodeproject.org/files/ENCFF319HSK/@@download/ENCFF319HSK.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF081HCC bam alignments ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PHP, ENCFF807MUK 691538155 ENCODE Processing Pipeline 675268d781719a127f7414e6be8969d8 https://www.encodeproject.org/files/ENCFF081HCC/@@download/ENCFF081HCC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000NHZ bam alignments ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NIP 1527564652 Richard Myers, HAIB d16e360a82b358bb3791aec75a6f21f1 https://www.encodeproject.org/files/ENCFF000NHZ/@@download/ENCFF000NHZ.bam hg19 released biological replicates with identical biosample ENCFF000NIC bam alignments ENCSR000BUD ChIP-seq EFO:0001086 A549 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NIM 839849513 Richard Myers, HAIB 509636361e57ba099568ca2058d54330 https://www.encodeproject.org/files/ENCFF000NIC/@@download/ENCFF000NIC.bam hg19 released biological replicates with identical biosample ENCFF309ANN bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YKZ, ENCFF807MUK 542388301 ENCODE Processing Pipeline 6b6a99af44f700dffa9085cc1232a151 https://www.encodeproject.org/files/ENCFF309ANN/@@download/ENCFF309ANN.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF632LZV bam alignments ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YLA, ENCFF807MUK 503661324 ENCODE Processing Pipeline a21b60f339ac2430f9cc5088fe62938f https://www.encodeproject.org/files/ENCFF632LZV/@@download/ENCFF632LZV.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QDR bam alignments ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QED 875197294 Richard Myers, HAIB ef21b521e42c859e84ff447bb3f84eb5 https://www.encodeproject.org/files/ENCFF000QDR/@@download/ENCFF000QDR.bam hg19 released low read length biological replicates with identical biosample ENCFF000QDU bam alignments ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QEG 785644626 Richard Myers, HAIB 80761bac7821da91c5c03caeed9fb513 https://www.encodeproject.org/files/ENCFF000QDU/@@download/ENCFF000QDU.bam hg19 released low read length biological replicates with identical biosample ENCFF418PTV bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBV, ENCFF807MUK 435417154 ENCODE Processing Pipeline e665f068ebcdcbf93d8628da3375b802 https://www.encodeproject.org/files/ENCFF418PTV/@@download/ENCFF418PTV.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF483LML bam alignments ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCB, ENCFF807MUK 519415857 ENCODE Processing Pipeline e52ed3f19a325d3af6acdf3f16078737 https://www.encodeproject.org/files/ENCFF483LML/@@download/ENCFF483LML.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF979ICT bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQK, ENCFF807MUK 382613234 ENCODE Processing Pipeline de508f66a62ea3bd27a48f9ff4aca1aa https://www.encodeproject.org/files/ENCFF979ICT/@@download/ENCFF979ICT.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF841TPD bam alignments ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQF, ENCFF807MUK 491653228 ENCODE Processing Pipeline 5b345ebba07f3b2f85cb54815be7aa44 https://www.encodeproject.org/files/ENCFF841TPD/@@download/ENCFF841TPD.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF331KEV bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAV, ENCFF807MUK 486206675 ENCODE Processing Pipeline 6d88f2733ec306b82327096ade54102a https://www.encodeproject.org/files/ENCFF331KEV/@@download/ENCFF331KEV.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF977PDQ bam alignments ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WAX, ENCFF807MUK 505632304 ENCODE Processing Pipeline 11564625327619206181c261a2e55811 https://www.encodeproject.org/files/ENCFF977PDQ/@@download/ENCFF977PDQ.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000YXJ bam alignments ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YXU 130816027 Michael Snyder, Stanford 74fb76b4cd38cdee35e54ba10bda3da3 https://www.encodeproject.org/files/ENCFF000YXJ/@@download/ENCFF000YXJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXK bam alignments ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXV 165257038 Michael Snyder, Stanford 79dcc36f6d98c66d0fe4d09370a33afa https://www.encodeproject.org/files/ENCFF000YXK/@@download/ENCFF000YXK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF891DUU bam alignments ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXO, ENCFF807MUK 357718096 ENCODE Processing Pipeline e4cde4a186a24a728810a286168d440e https://www.encodeproject.org/files/ENCFF891DUU/@@download/ENCFF891DUU.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF614QMP bam alignments ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BVP, ENCFF807MUK 1123399603 ENCODE Processing Pipeline c8d1f49f715cbb6d3b1a1b01669a3393 https://www.encodeproject.org/files/ENCFF614QMP/@@download/ENCFF614QMP.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF768SVS bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF345SRH, ENCFF807MUK 726011145 ENCODE Processing Pipeline c94e4789b3ef262f66f0e77b3c2b6ee7 https://www.encodeproject.org/files/ENCFF768SVS/@@download/ENCFF768SVS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF813JWE bam alignments ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF218JDY, ENCFF807MUK 541808386 ENCODE Processing Pipeline 8fd2cd7abb23355537c1be2a01bd212b https://www.encodeproject.org/files/ENCFF813JWE/@@download/ENCFF813JWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF867DTO bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XQM, ENCFF807MUK 459577908 ENCODE Processing Pipeline 7a9294e9e142574e73f92137c768ad68 https://www.encodeproject.org/files/ENCFF867DTO/@@download/ENCFF867DTO.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF355LJR bam alignments ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XQN, ENCFF807MUK 786763881 ENCODE Processing Pipeline cbbcb443ed3a59fbd6dc562515e21705 https://www.encodeproject.org/files/ENCFF355LJR/@@download/ENCFF355LJR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF608WKP bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XVT, ENCFF807MUK 606241733 ENCODE Processing Pipeline f255212e0cc87ac738d27c85a324b7f3 https://www.encodeproject.org/files/ENCFF608WKP/@@download/ENCFF608WKP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF157CZE bam alignments ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XVS, ENCFF807MUK 778538668 ENCODE Processing Pipeline ebe565306d9d8c99df3db00abd54aee0 https://www.encodeproject.org/files/ENCFF157CZE/@@download/ENCFF157CZE.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XRW bam alignments ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XSK 169795424 Michael Snyder, Stanford 4557402df23cb5b75377cea4626b8db6 https://www.encodeproject.org/files/ENCFF000XRW/@@download/ENCFF000XRW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRZ bam alignments ENCSR000EET ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HSF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XSL 252027576 Michael Snyder, Stanford bd4b67e748bb9b60bfa2213c4179bfa6 https://www.encodeproject.org/files/ENCFF000XRZ/@@download/ENCFF000XRZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000NAT bam alignments ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NBH 1441210091 Richard Myers, HAIB b829bc4b558c9615b85e48f0f5a617fa https://www.encodeproject.org/files/ENCFF000NAT/@@download/ENCFF000NAT.bam hg19 released biological replicates with identical biosample ENCFF000NAX bam alignments ENCSR000BTI ChIP-seq EFO:0001086 A549 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NBM 1628324074 Richard Myers, HAIB 6b0432642ed609d5d9bd191cc7a7a549 https://www.encodeproject.org/files/ENCFF000NAX/@@download/ENCFF000NAX.bam hg19 released biological replicates with identical biosample ENCFF807JYY bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 40 ENCFF251CER, ENCFF807MUK 393560303 ENCODE Processing Pipeline 176e6e362eab17557a68b76e2d8b1642 https://www.encodeproject.org/files/ENCFF807JYY/@@download/ENCFF807JYY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF198IJO bam alignments ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 40 ENCFF733YBM, ENCFF807MUK 388823449 ENCODE Processing Pipeline f945e6a4d335e789d19a3aeb23ce709f https://www.encodeproject.org/files/ENCFF198IJO/@@download/ENCFF198IJO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF334WOO bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000RHM, ENCFF807MUK 586122360 ENCODE Processing Pipeline 427a9501e58aa320adfb0f999dd4e733 https://www.encodeproject.org/files/ENCFF334WOO/@@download/ENCFF334WOO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF690QBI bam alignments ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000RHO, ENCFF807MUK 807155802 ENCODE Processing Pipeline 183c6a0e12e149ceb7f9e02ee3c79457 https://www.encodeproject.org/files/ENCFF690QBI/@@download/ENCFF690QBI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF255FOB bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 100 ENCFF145TGH, ENCFF766EXH, ENCFF807MUK 6665060850 ENCODE Processing Pipeline ad20cf85ea797bfaeaa34ad9ad6c503a https://www.encodeproject.org/files/ENCFF255FOB/@@download/ENCFF255FOB.bam hg19 released ENCFF274MHJ bam alignments ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 100 ENCFF341BBR, ENCFF807MUK, ENCFF859KHK 7856628742 ENCODE Processing Pipeline 903c5c7e04463ab8dae59668f3095d57 https://www.encodeproject.org/files/ENCFF274MHJ/@@download/ENCFF274MHJ.bam hg19 released ENCFF387QOE bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 28 ENCFF000VYT, ENCFF807MUK 546803975 ENCODE Processing Pipeline bc89c87588aea2505e84a9ab9bb02e09 https://www.encodeproject.org/files/ENCFF387QOE/@@download/ENCFF387QOE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF287GWT bam alignments ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 28 ENCFF000VYV, ENCFF807MUK 862966913 ENCODE Processing Pipeline 17e60a696c80d42940156a230af14c4c https://www.encodeproject.org/files/ENCFF287GWT/@@download/ENCFF287GWT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF617HLC bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NYJ, ENCFF807MUK 669300965 ENCODE Processing Pipeline c142a6b687b30b71c766bef10c1a6c71 https://www.encodeproject.org/files/ENCFF617HLC/@@download/ENCFF617HLC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF930KIJ bam alignments ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NYH, ENCFF807MUK 802797569 ENCODE Processing Pipeline d8ee1d883fa258a566b0e474ef40b1a3 https://www.encodeproject.org/files/ENCFF930KIJ/@@download/ENCFF930KIJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF000OXY bam alignments ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYG 1047315206 Richard Myers, HAIB 7fc2adadbb4bf70430692379c1f1458f https://www.encodeproject.org/files/ENCFF000OXY/@@download/ENCFF000OXY.bam hg19 released biological replicates with identical biosample ENCFF000OYB bam alignments ENCSR000BUH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYN 1958945810 Richard Myers, HAIB fcbd818e259b9abaf9a8cbbc7b45b65f https://www.encodeproject.org/files/ENCFF000OYB/@@download/ENCFF000OYB.bam hg19 released biological replicates with identical biosample ENCFF000XYF bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYM 98511613 Sherman Weissman, Yale 172e03555b0e089dc89941181f458527 https://www.encodeproject.org/files/ENCFF000XYF/@@download/ENCFF000XYF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYH bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYN 160923058 Sherman Weissman, Yale 72ec3f3a772da25af775902e0f6602e5 https://www.encodeproject.org/files/ENCFF000XYH/@@download/ENCFF000XYH.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XYJ bam alignments ENCSR000EZO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYS 201925494 Sherman Weissman, Yale c6ffd593a755ff4c667ed2de9addac33 https://www.encodeproject.org/files/ENCFF000XYJ/@@download/ENCFF000XYJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF969WVY bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPH, ENCFF807MUK 208451055 ENCODE Processing Pipeline f1da909a9bf5e3d226a1e2fbbd5c83e0 https://www.encodeproject.org/files/ENCFF969WVY/@@download/ENCFF969WVY.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF900YNG bam alignments ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPK, ENCFF807MUK 315119018 ENCODE Processing Pipeline 02373f17434d2a00f34ff7d76d5d436b https://www.encodeproject.org/files/ENCFF900YNG/@@download/ENCFF900YNG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF755OKE bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 40 ENCFF585EDM, ENCFF807MUK 498250386 ENCODE Processing Pipeline c9fab266ac1eb02217f8da5c6b832c95 https://www.encodeproject.org/files/ENCFF755OKE/@@download/ENCFF755OKE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF113OAS bam alignments ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 40 ENCFF487FMG, ENCFF807MUK 422075341 ENCODE Processing Pipeline f1b2e5f3dae2470fd9a832d157cb9e1e https://www.encodeproject.org/files/ENCFF113OAS/@@download/ENCFF113OAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF470KVA bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HQL, ENCFF807MUK 880623533 ENCODE Processing Pipeline 02adf366c2b3c89503d5cca3c5b513cc https://www.encodeproject.org/files/ENCFF470KVA/@@download/ENCFF470KVA.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF066DPY bam alignments ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HQM, ENCFF807MUK 998006777 ENCODE Processing Pipeline 9ec9f4957770a521c509c0882863767b https://www.encodeproject.org/files/ENCFF066DPY/@@download/ENCFF066DPY.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF990BKO bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QSN, ENCFF807MUK 549712358 ENCODE Processing Pipeline ccd7d5bc68eeaa6460b4598d26a4d642 https://www.encodeproject.org/files/ENCFF990BKO/@@download/ENCFF990BKO.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF555PAB bam alignments ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QST, ENCFF807MUK 450400543 ENCODE Processing Pipeline dae1ba5ad022d7c68e38c261cdf55fe0 https://www.encodeproject.org/files/ENCFF555PAB/@@download/ENCFF555PAB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF349ECU bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJD, ENCFF807MUK 514903547 ENCODE Processing Pipeline f59f88313625d05453727022600099ae https://www.encodeproject.org/files/ENCFF349ECU/@@download/ENCFF349ECU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF266XYT bam alignments ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJJ, ENCFF807MUK 840004673 ENCODE Processing Pipeline 28246eeb3d58d40c137fd48104d6557d https://www.encodeproject.org/files/ENCFF266XYT/@@download/ENCFF266XYT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF868YCY bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YYD, ENCFF807MUK 673472414 ENCODE Processing Pipeline 0c79ce8d46ae2a2a6aec04b611944630 https://www.encodeproject.org/files/ENCFF868YCY/@@download/ENCFF868YCY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF325VWA bam alignments ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YYF, ENCFF000YYI, ENCFF807MUK 832546989 ENCODE Processing Pipeline 8c98fad8e45eaa30e7ffe1d628bc4669 https://www.encodeproject.org/files/ENCFF325VWA/@@download/ENCFF325VWA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF683FXB bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HCR, ENCFF807MUK 364004540 ENCODE Processing Pipeline ee713e8e34d843ce70266dc2fa2f428b https://www.encodeproject.org/files/ENCFF683FXB/@@download/ENCFF683FXB.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF515ILZ bam alignments ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 36 ENCFF001HCS, ENCFF807MUK 574312748 ENCODE Processing Pipeline ca84d7cfa15d079d78c6cbde2520460c https://www.encodeproject.org/files/ENCFF515ILZ/@@download/ENCFF515ILZ.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF000RNM bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000ROI 977449682 Vishwanath Iyer, UTA e2638dbe756ffb85635af279bd27882d https://www.encodeproject.org/files/ENCFF000RNM/@@download/ENCFF000RNM.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000RNO bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RNU 552116951 Vishwanath Iyer, UTA 296a37a4726d5945b9e356d91615f0ee https://www.encodeproject.org/files/ENCFF000RNO/@@download/ENCFF000RNO.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF666BHZ bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RNU, ENCFF807MUK 414658480 ENCODE Processing Pipeline 7b9ad4bedad40859318e10ceeca47b73 https://www.encodeproject.org/files/ENCFF666BHZ/@@download/ENCFF666BHZ.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF531PKS bam alignments ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000ROI, ENCFF807MUK 735790573 ENCODE Processing Pipeline 46a1381cbbd4098c6126caa2fce7c2dd https://www.encodeproject.org/files/ENCFF531PKS/@@download/ENCFF531PKS.bam hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF000PTB bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PTO 1444872272 Richard Myers, HAIB 91c5bbed5a9cb81b160c7cf89844e83f https://www.encodeproject.org/files/ENCFF000PTB/@@download/ENCFF000PTB.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF000PTE bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PTQ 1376808865 Richard Myers, HAIB cc7629e8f75b819dcbc14be2dfb4f430 https://www.encodeproject.org/files/ENCFF000PTE/@@download/ENCFF000PTE.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF810DCX bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTQ, ENCFF807MUK 928976986 ENCODE Processing Pipeline 4bb07ccb5b7248581dc1fbc738633c32 https://www.encodeproject.org/files/ENCFF810DCX/@@download/ENCFF810DCX.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF114RUT bam alignments ENCSR000BVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZEB1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTO, ENCFF807MUK 1088844899 ENCODE Processing Pipeline a5e91d56db23db99f5dc32dfb86b7016 https://www.encodeproject.org/files/ENCFF114RUT/@@download/ENCFF114RUT.bam hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample, NTR biosample ENCFF270JJL bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZJH, ENCFF807MUK 525454660 ENCODE Processing Pipeline 7bc49218028416bca0af866c643d4f83 https://www.encodeproject.org/files/ENCFF270JJL/@@download/ENCFF270JJL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF253RFD bam alignments ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJG, ENCFF807MUK 507974779 ENCODE Processing Pipeline 1df66646fff1583b3cbb0c253bde38ee https://www.encodeproject.org/files/ENCFF253RFD/@@download/ENCFF253RFD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF461UBM bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YMV, ENCFF807MUK 135030508 ENCODE Processing Pipeline 6f3c994e2d414780e18da686b90cf685 https://www.encodeproject.org/files/ENCFF461UBM/@@download/ENCFF461UBM.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF465DSP bam alignments ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNM, ENCFF807MUK 288049568 ENCODE Processing Pipeline 07ecb237a52454fb3f8dd44beb2a6ecb https://www.encodeproject.org/files/ENCFF465DSP/@@download/ENCFF465DSP.bam hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000NFC bam alignments ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NFL 1325623802 Richard Myers, HAIB 49afb6bf007996c6d9509d4a030cc7d5 https://www.encodeproject.org/files/ENCFF000NFC/@@download/ENCFF000NFC.bam hg19 released biological replicates with identical biosample ENCFF000NFD bam alignments ENCSR000BUC ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NFN 1333838156 Richard Myers, HAIB 113e96cd1e03465a49334f6f1a8cf74c https://www.encodeproject.org/files/ENCFF000NFD/@@download/ENCFF000NFD.bam hg19 released biological replicates with identical biosample ENCFF000PCO bam alignments ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PDC 1046343753 Richard Myers, HAIB 4ce0f651eb6d243385f0416a0224a903 https://www.encodeproject.org/files/ENCFF000PCO/@@download/ENCFF000PCO.bam hg19 released biological replicates with identical biosample ENCFF000PCP bam alignments ENCSR000BVJ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PDE 792525186 Richard Myers, HAIB 144a56671755a77bffa6052f7284b464 https://www.encodeproject.org/files/ENCFF000PCP/@@download/ENCFF000PCP.bam hg19 released biological replicates with identical biosample ENCFF406ZWO bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000XCT, ENCFF807MUK 126559077 ENCODE Processing Pipeline 629375970b5ce0292e6d9ecece597826 https://www.encodeproject.org/files/ENCFF406ZWO/@@download/ENCFF406ZWO.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF628WKV bam alignments ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000XCV, ENCFF807MUK 248208221 ENCODE Processing Pipeline c636e680a0ce930a0c2474d9e9707af2 https://www.encodeproject.org/files/ENCFF628WKV/@@download/ENCFF628WKV.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF000QMV bam alignments ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNK 1709520694 Richard Myers, HAIB c1b97327c16f8acfcbc160c4ddf1956e https://www.encodeproject.org/files/ENCFF000QMV/@@download/ENCFF000QMV.bam hg19 released biological replicates with identical biosample ENCFF000QMY bam alignments ENCSR000BUK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNJ 1338050682 Richard Myers, HAIB d0005d59276388fdffb76e8a6c7f33ac https://www.encodeproject.org/files/ENCFF000QMY/@@download/ENCFF000QMY.bam hg19 released biological replicates with identical biosample ENCFF498ADD bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZF, ENCFF807MUK 1075035759 ENCODE Processing Pipeline 2e6f8c68742feddd035fd8032e2ec375 https://www.encodeproject.org/files/ENCFF498ADD/@@download/ENCFF498ADD.bam hg19 released low read length biological replicates with identical biosample ENCFF860JJU bam alignments ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZG, ENCFF807MUK 1214621465 ENCODE Processing Pipeline bd3e5d6e0fb855d677270e3bf8a5641d https://www.encodeproject.org/files/ENCFF860JJU/@@download/ENCFF860JJU.bam hg19 released low read length biological replicates with identical biosample ENCFF436AVX bam alignments ENCSR000BRG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EGR1-human DNA see document see document False 2012-02-29 ENCODE 3 25 ENCFF000NVB, ENCFF807MUK 490876518 ENCODE Processing Pipeline da2c6de8972ecab02e4b3e3d8ee4d559 https://www.encodeproject.org/files/ENCFF436AVX/@@download/ENCFF436AVX.bam hg19 released low read length, low read depth ENCFF044SVI bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZIY, ENCFF807MUK 558819332 ENCODE Processing Pipeline 60ee43f093ee0f7ede1f466710565d2d https://www.encodeproject.org/files/ENCFF044SVI/@@download/ENCFF044SVI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF008ZST bam alignments ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZJA, ENCFF807MUK 718679710 ENCODE Processing Pipeline 5d7494980b22439fc016630dc99dd71b https://www.encodeproject.org/files/ENCFF008ZST/@@download/ENCFF008ZST.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF266NHV bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RHD, ENCFF807MUK 818563979 ENCODE Processing Pipeline 25e3586c559dfadc284bfa3104143629 https://www.encodeproject.org/files/ENCFF266NHV/@@download/ENCFF266NHV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF117IWF bam alignments ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RHF, ENCFF807MUK 670879059 ENCODE Processing Pipeline 165d449f1a3343f277edfba631cc2b3e https://www.encodeproject.org/files/ENCFF117IWF/@@download/ENCFF117IWF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF992CYL bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQY, ENCFF807MUK 739248511 ENCODE Processing Pipeline 7177f85254753297bda5a812b283e0e8 https://www.encodeproject.org/files/ENCFF992CYL/@@download/ENCFF992CYL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF167WNW bam alignments ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQV, ENCFF807MUK 779725023 ENCODE Processing Pipeline 754ac19b3bd92dc2723265e4d7fe3651 https://www.encodeproject.org/files/ENCFF167WNW/@@download/ENCFF167WNW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF496SZR bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YLY, ENCFF807MUK 911289908 ENCODE Processing Pipeline cbad410c71b854bdb7576e8e12d5a0f1 https://www.encodeproject.org/files/ENCFF496SZR/@@download/ENCFF496SZR.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF487UYG bam alignments ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YLW, ENCFF807MUK 876636084 ENCODE Processing Pipeline 943c2ad82654a7d8cca7abd29e585c4f https://www.encodeproject.org/files/ENCFF487UYG/@@download/ENCFF487UYG.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF251HGY bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XUK, ENCFF807MUK 1055442532 ENCODE Processing Pipeline f0a879b704635dca0579f8fd05794eec https://www.encodeproject.org/files/ENCFF251HGY/@@download/ENCFF251HGY.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF126OVJ bam alignments ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUL, ENCFF807MUK 1133000675 ENCODE Processing Pipeline e11a6c36cbd88d9c2638b2bc3e267a6e https://www.encodeproject.org/files/ENCFF126OVJ/@@download/ENCFF126OVJ.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF406DSV bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 100 ENCFF807MUK, ENCFF827PIQ, ENCFF949SIP 6383706780 ENCODE Processing Pipeline 8c57ab99572aa6608888130533c4c8bf https://www.encodeproject.org/files/ENCFF406DSV/@@download/ENCFF406DSV.bam hg19 released antibody characterized with exemption ENCFF560SBN bam alignments ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 100 ENCFF802HNQ, ENCFF807MUK, ENCFF954DSX 5616360705 ENCODE Processing Pipeline 7383a46b20d79ca58b0b4bb939a68f4e https://www.encodeproject.org/files/ENCFF560SBN/@@download/ENCFF560SBN.bam hg19 released antibody characterized with exemption ENCFF419FEJ bam alignments ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HKO, ENCFF807MUK 637891246 ENCODE Processing Pipeline 0c3efd5c3f13e37d484d4a2e740eaa4d https://www.encodeproject.org/files/ENCFF419FEJ/@@download/ENCFF419FEJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000QRG bam alignments ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QRV 1419017242 Richard Myers, HAIB 53e9cd4b1e3ff5e2eecd70ab2d0aba7f https://www.encodeproject.org/files/ENCFF000QRG/@@download/ENCFF000QRG.bam hg19 released biological replicates with identical biosample ENCFF000QRI bam alignments ENCSR000BUN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF12-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QRU 1446730666 Richard Myers, HAIB 27ab6b9a1e088707ea54cfb010f7220a https://www.encodeproject.org/files/ENCFF000QRI/@@download/ENCFF000QRI.bam hg19 released biological replicates with identical biosample ENCFF362BFL bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZEX, ENCFF807MUK 146972851 ENCODE Processing Pipeline 987ecc629057affae433a925a2c99bb9 https://www.encodeproject.org/files/ENCFF362BFL/@@download/ENCFF362BFL.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF221GJM bam alignments ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZEY, ENCFF807MUK 151423686 ENCODE Processing Pipeline f36189516a35d2767a251bb3905cb27b https://www.encodeproject.org/files/ENCFF221GJM/@@download/ENCFF221GJM.bam hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF487NQY bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 50 ENCFF142GQB, ENCFF807MUK 1009953701 ENCODE Processing Pipeline 2509ad9514586aad2df8f0f7be4a0ff7 https://www.encodeproject.org/files/ENCFF487NQY/@@download/ENCFF487NQY.bam hg19 released low read depth, antibody characterized with exemption ENCFF272HDX bam alignments ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 50 ENCFF796BOA, ENCFF807MUK 1111429634 ENCODE Processing Pipeline faa4f859dbcd90db520d89ca7ffd0a87 https://www.encodeproject.org/files/ENCFF272HDX/@@download/ENCFF272HDX.bam hg19 released low read depth, antibody characterized with exemption ENCFF269ZZO bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAT, ENCFF807MUK 813441110 ENCODE Processing Pipeline 330dd6044fa222470950ca1a066921e6 https://www.encodeproject.org/files/ENCFF269ZZO/@@download/ENCFF269ZZO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF495EUE bam alignments ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YAR, ENCFF807MUK 304771468 ENCODE Processing Pipeline 4173b837ac03ca846ce87c0dab6c9508 https://www.encodeproject.org/files/ENCFF495EUE/@@download/ENCFF495EUE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000PBZ bam alignments ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCM 1202382580 Richard Myers, HAIB e229ada0f57a590f77aae42b5eb78cc5 https://www.encodeproject.org/files/ENCFF000PBZ/@@download/ENCFF000PBZ.bam hg19 released biological replicates with identical biosample ENCFF000PCC bam alignments ENCSR000BSF ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SP1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCT 1688076972 Richard Myers, HAIB c3e5505f7902e280ca0b23ec5b884b82 https://www.encodeproject.org/files/ENCFF000PCC/@@download/ENCFF000PCC.bam hg19 released biological replicates with identical biosample ENCFF564MCX bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF594HPD, ENCFF807MUK 603816064 ENCODE Processing Pipeline 1aa03c92d98c8cf405c97c26ba542f30 https://www.encodeproject.org/files/ENCFF564MCX/@@download/ENCFF564MCX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF552DDV bam alignments ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF269QCW, ENCFF807MUK 803068676 ENCODE Processing Pipeline 612a777fe95347b367bcc5fad666fc8c https://www.encodeproject.org/files/ENCFF552DDV/@@download/ENCFF552DDV.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF000XEB bam alignments ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XEK 335763267 Michael Snyder, Stanford 49cf97e68cf35048215c7fe5f4c72b80 https://www.encodeproject.org/files/ENCFF000XEB/@@download/ENCFF000XEB.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XED bam alignments ENCSR000ECR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens KAT2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XEJ 436881622 Michael Snyder, Stanford 51440d3ec2ef1c95f44c8758e64008e5 https://www.encodeproject.org/files/ENCFF000XED/@@download/ENCFF000XED.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF455WGF bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZH, ENCFF807MUK 636894057 ENCODE Processing Pipeline a06472a41f84678a897c6da0be6d6e44 https://www.encodeproject.org/files/ENCFF455WGF/@@download/ENCFF455WGF.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF866ZRH bam alignments ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MZO, ENCFF807MUK 1268802984 ENCODE Processing Pipeline 051d61181186466547f7341edb38ead6 https://www.encodeproject.org/files/ENCFF866ZRH/@@download/ENCFF866ZRH.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000WYS bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYY 440890959 Peggy Farnham, USC b7a0864189a5da54bb275780365d06b8 https://www.encodeproject.org/files/ENCFF000WYS/@@download/ENCFF000WYS.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WYT bam alignments ENCSR000EVD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WZA 488367871 Peggy Farnham, USC 7fda32f7bd1d81a461d9236945f7aedd https://www.encodeproject.org/files/ENCFF000WYT/@@download/ENCFF000WYT.bam hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000XVY bam alignments ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XWI 283404291 Michael Snyder, Stanford 8ad083e2a603fe2c91fa15454ab2f32f https://www.encodeproject.org/files/ENCFF000XVY/@@download/ENCFF000XVY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XVZ bam alignments ENCSR000EEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWF 127511080 Michael Snyder, Stanford da0d28a9fbad103e54ec40aa9502ec8c https://www.encodeproject.org/files/ENCFF000XVZ/@@download/ENCFF000XVZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF014ABI bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 100 ENCFF052XOQ, ENCFF156EZY, ENCFF807MUK 5602767251 ENCODE Processing Pipeline 03cfc53293c16e417ab5440104db2fdf https://www.encodeproject.org/files/ENCFF014ABI/@@download/ENCFF014ABI.bam hg19 released missing genetic modification characterization ENCFF951SEJ bam alignments ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 100 ENCFF470OUZ, ENCFF555QJQ, ENCFF807MUK 5721027203 ENCODE Processing Pipeline 28cd6efbabcf46b53c027a74e148aba5 https://www.encodeproject.org/files/ENCFF951SEJ/@@download/ENCFF951SEJ.bam hg19 released missing genetic modification characterization ENCFF000YUP bam alignments ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YVD 235932637 Sherman Weissman, Yale 5b72856ac7aecab95a0652bebf7de4f6 https://www.encodeproject.org/files/ENCFF000YUP/@@download/ENCFF000YUP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YUQ bam alignments ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YVH 213944831 Sherman Weissman, Yale 10126cfa6d815c97244a25c2b3a3e35f https://www.encodeproject.org/files/ENCFF000YUQ/@@download/ENCFF000YUQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000PAK bam alignments ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PAX 1034726790 Richard Myers, HAIB 6aff9eca1b4439e6e8a20ce62f369853 https://www.encodeproject.org/files/ENCFF000PAK/@@download/ENCFF000PAK.bam hg19 released biological replicates with identical biosample ENCFF000PAL bam alignments ENCSR000BVI ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PAW 1624474092 Richard Myers, HAIB b52edd411f7259d7dc244c56e879f0cc https://www.encodeproject.org/files/ENCFF000PAL/@@download/ENCFF000PAL.bam hg19 released biological replicates with identical biosample ENCFF000XES bam alignments ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF000XEV 833038992 Michael Snyder, Stanford 0ab0c654afb08ba8df5ea1de78679691 https://www.encodeproject.org/files/ENCFF000XES/@@download/ENCFF000XES.bam hg19 released low read length biological replicates with identical biosample ENCFF000XET bam alignments ENCSR000ECH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF000XEX 575156715 Michael Snyder, Stanford b1ab07ab95e5632fdaa4d4fcc6cceacc https://www.encodeproject.org/files/ENCFF000XET/@@download/ENCFF000XET.bam hg19 released low read length biological replicates with identical biosample ENCFF685FVQ bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AHP, ENCFF807MUK 274338853 ENCODE Processing Pipeline 6d1bbae662ea6866d0f21d2a584ccd9c https://www.encodeproject.org/files/ENCFF685FVQ/@@download/ENCFF685FVQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF631JUR bam alignments ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AHR, ENCFF807MUK 663028767 ENCODE Processing Pipeline cba5082862562fefe04c97ec237cc17b https://www.encodeproject.org/files/ENCFF631JUR/@@download/ENCFF631JUR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF228QWW bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NZS, ENCFF807MUK 477534235 ENCODE Processing Pipeline b14b448d35f78fa3280b5eafd27cb0ee https://www.encodeproject.org/files/ENCFF228QWW/@@download/ENCFF228QWW.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF216EUF bam alignments ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NZX, ENCFF807MUK 929244003 ENCODE Processing Pipeline 4ccb9c5ab55377e50c6467c661aef965 https://www.encodeproject.org/files/ENCFF216EUF/@@download/ENCFF216EUF.bam hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF615AON bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OSU, ENCFF807MUK 557775431 ENCODE Processing Pipeline 9d94828820515847804e37fbc19849f1 https://www.encodeproject.org/files/ENCFF615AON/@@download/ENCFF615AON.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF117OSG bam alignments ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OSX, ENCFF807MUK 218430404 ENCODE Processing Pipeline 8a27ee39aade9bf5b076688945e56aa7 https://www.encodeproject.org/files/ENCFF117OSG/@@download/ENCFF117OSG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000YAV bam alignments ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YBA 855542253 Michael Snyder, Stanford 07026615bfd376e87b8340bef2a0ae7b https://www.encodeproject.org/files/ENCFF000YAV/@@download/ENCFF000YAV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YAW bam alignments ENCSR000EEZ ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YBB 659069017 Michael Snyder, Stanford 5357b1655290828dbdcba510ec157240 https://www.encodeproject.org/files/ENCFF000YAW/@@download/ENCFF000YAW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXS bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XYD 117633023 Sherman Weissman, Yale 6ffc14c1d63e8856a153de0051c6a9eb https://www.encodeproject.org/files/ENCFF000XXS/@@download/ENCFF000XXS.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXT bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XYK 168299120 Sherman Weissman, Yale 851d627d5a2878c3dbe3b5d1c752fbb5 https://www.encodeproject.org/files/ENCFF000XXT/@@download/ENCFF000XXT.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XXU bam alignments ENCSR000EZP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens pravastatin 2.0 μM 16.0 hour SREBF1-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XYL 220987591 Sherman Weissman, Yale ef27232f81f7f1d25e2b3e2a442673a7 https://www.encodeproject.org/files/ENCFF000XXU/@@download/ENCFF000XXU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RTZ bam alignments ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RUI 304787551 Vishwanath Iyer, UTA 0421dbb3a39f0fc2450920bd7f96a978 https://www.encodeproject.org/files/ENCFF000RTZ/@@download/ENCFF000RTZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUB bam alignments ENCSR000DLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RUJ 290716582 Vishwanath Iyer, UTA b9a0a82095cd5aba8ceb50cac4397c52 https://www.encodeproject.org/files/ENCFF000RUB/@@download/ENCFF000RUB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF940YYO bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VOL, ENCFF847CCY 863160003 ENCODE Processing Pipeline 14b1af885b9b9b6996987cc9bcaeb561 https://www.encodeproject.org/files/ENCFF940YYO/@@download/ENCFF940YYO.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF644WIF bam alignments ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VON, ENCFF847CCY 634377812 ENCODE Processing Pipeline 9faaf8bfe0c7db9ca374d29adf7379a7 https://www.encodeproject.org/files/ENCFF644WIF/@@download/ENCFF644WIF.bam hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OVO bam alignments ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OWA 786797193 Richard Myers, HAIB 55e5861ac006191ddf0c597985c35f7c https://www.encodeproject.org/files/ENCFF000OVO/@@download/ENCFF000OVO.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF000OVS bam alignments ENCSR000BRY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OWD 1365362996 Richard Myers, HAIB 26aca4e492a542e86f7f910a87c35a56 https://www.encodeproject.org/files/ENCFF000OVS/@@download/ENCFF000OVS.bam hg19 released low read length, inconsistent platforms, mixed read lengths biological replicates with identical biosample ENCFF588TSB bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSL, ENCFF807MUK 791803153 ENCODE Processing Pipeline bc65059bbfe39b828a704ce957e1a33b https://www.encodeproject.org/files/ENCFF588TSB/@@download/ENCFF588TSB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF784AUK bam alignments ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSN, ENCFF807MUK 946964664 ENCODE Processing Pipeline 8cf037ad731bd724985e764b6c497a6c https://www.encodeproject.org/files/ENCFF784AUK/@@download/ENCFF784AUK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF158YVQ bam alignments ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF311EXW, ENCFF803CMG, ENCFF807MUK 3705335722 ENCODE Processing Pipeline fb50f25166391efc93736e640ac292df https://www.encodeproject.org/files/ENCFF158YVQ/@@download/ENCFF158YVQ.bam hg19 released antibody characterized with exemption ENCFF205OOU bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000ZDC, ENCFF807MUK 276428613 ENCODE Processing Pipeline 0826876933f2a6d5831c62e5a880592d https://www.encodeproject.org/files/ENCFF205OOU/@@download/ENCFF205OOU.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF396QHD bam alignments ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000ZCP, ENCFF807MUK 239650181 ENCODE Processing Pipeline 114105c7389071e71379f5728d9e1489 https://www.encodeproject.org/files/ENCFF396QHD/@@download/ENCFF396QHD.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF549RWC bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 50 ENCFF807MUK, ENCFF988XKO 1443671011 ENCODE Processing Pipeline 7b48f6771082b0e18ca54dc1d497be6e https://www.encodeproject.org/files/ENCFF549RWC/@@download/ENCFF549RWC.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF888UFX bam alignments ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 50 ENCFF573BXF, ENCFF807MUK 2217497099 ENCODE Processing Pipeline 823e831af408ef65665000346fb29e49 https://www.encodeproject.org/files/ENCFF888UFX/@@download/ENCFF888UFX.bam hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF000VRU bam alignments ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000VSP 222497763 Michael Snyder, Stanford 214de7cd00dde5a46f0b9fed00157c5c https://www.encodeproject.org/files/ENCFF000VRU/@@download/ENCFF000VRU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000VRV bam alignments ENCSR000DYO ChIP-seq EFO:0005336 GM10847 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000VSO 133271358 Michael Snyder, Stanford 1a9f62dbc91f70d339eba005393476bc https://www.encodeproject.org/files/ENCFF000VRV/@@download/ENCFF000VRV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000OYW bam alignments ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZI 868474344 Richard Myers, HAIB b3c320463e98406dfb488844265352a9 https://www.encodeproject.org/files/ENCFF000OYW/@@download/ENCFF000OYW.bam hg19 released biological replicates with identical biosample ENCFF000OZA bam alignments ENCSR000BRZ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EGR1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZL 1387350071 Richard Myers, HAIB 2e43db74162344950c1ee12ad3983ef8 https://www.encodeproject.org/files/ENCFF000OZA/@@download/ENCFF000OZA.bam hg19 released biological replicates with identical biosample ENCFF479NOE bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUB, ENCFF807MUK 773077535 ENCODE Processing Pipeline 097134d1b04a991df449988484c14655 https://www.encodeproject.org/files/ENCFF479NOE/@@download/ENCFF479NOE.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF237CLM bam alignments ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUK, ENCFF807MUK 892320034 ENCODE Processing Pipeline ec311d7a26efcc2327eea1264b3f172f https://www.encodeproject.org/files/ENCFF237CLM/@@download/ENCFF237CLM.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF000OZE bam alignments ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZS 1548780097 Richard Myers, HAIB ec79c2542db35deeeedf874fe8daef85 https://www.encodeproject.org/files/ENCFF000OZE/@@download/ENCFF000OZE.bam hg19 released biological replicates with identical biosample ENCFF000OZF bam alignments ENCSR000BVH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OZU 2161326483 Richard Myers, HAIB b882e8de9496bf1a09c00f36d40864e9 https://www.encodeproject.org/files/ENCFF000OZF/@@download/ENCFF000OZF.bam hg19 released biological replicates with identical biosample ENCFF524OIZ bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HBD, ENCFF807MUK 404917790 ENCODE Processing Pipeline d9749ca2878ffe054e473558a82fef38 https://www.encodeproject.org/files/ENCFF524OIZ/@@download/ENCFF524OIZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF451AFR bam alignments ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HBC, ENCFF807MUK 318449367 ENCODE Processing Pipeline bcf46523871031db5fce736e2f80faaf https://www.encodeproject.org/files/ENCFF451AFR/@@download/ENCFF451AFR.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF681PEE bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NID, ENCFF807MUK 830308290 ENCODE Processing Pipeline db3ce9a3c339732366965ba5218f2076 https://www.encodeproject.org/files/ENCFF681PEE/@@download/ENCFF681PEE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF659DTG bam alignments ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NIG, ENCFF807MUK 852305643 ENCODE Processing Pipeline 17016191ea0b95dc027d971583ddedf6 https://www.encodeproject.org/files/ENCFF659DTG/@@download/ENCFF659DTG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF384ZYV bam alignments ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF195OVM, ENCFF807MUK, ENCFF943DRV 5855689567 ENCODE Processing Pipeline 297bf52930754cc33bdeb344ba2b2b62 https://www.encodeproject.org/files/ENCFF384ZYV/@@download/ENCFF384ZYV.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF115HFB bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NOW, ENCFF807MUK 488790698 ENCODE Processing Pipeline aec7b04cf2d0256000634d16d8c3ac92 https://www.encodeproject.org/files/ENCFF115HFB/@@download/ENCFF115HFB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF837IWA bam alignments ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NPB, ENCFF807MUK 624076878 ENCODE Processing Pipeline 03abeee9a77933f9e60464f0ba45f10f https://www.encodeproject.org/files/ENCFF837IWA/@@download/ENCFF837IWA.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000RCO bam alignments ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RDA 1630876486 Richard Myers, HAIB 574b3dcccc2156a54feaafb2161363ce https://www.encodeproject.org/files/ENCFF000RCO/@@download/ENCFF000RCO.bam hg19 released biological replicates with identical biosample ENCFF000RCS bam alignments ENCSR000BVG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RXRA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RCY 1184619894 Richard Myers, HAIB 1a879d7e89fb85b1061616715c98cc7c https://www.encodeproject.org/files/ENCFF000RCS/@@download/ENCFF000RCS.bam hg19 released biological replicates with identical biosample ENCFF000RUV bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVF 655643056 Vishwanath Iyer, UTA b2253794c1f7fa0a60c442a3b35a96cc https://www.encodeproject.org/files/ENCFF000RUV/@@download/ENCFF000RUV.bam hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF257ZTK bam alignments ENCSR000DLU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RVF, ENCFF807MUK 492881446 ENCODE Processing Pipeline 2df8fd56be6ce8f792f69ed6199aa73f https://www.encodeproject.org/files/ENCFF257ZTK/@@download/ENCFF257ZTK.bam hg19 released low read length, mild to moderate bottlenecking insufficient read depth ENCFF000QXH bam alignments ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QXR 1658124295 Richard Myers, HAIB 13be690710870ec09c6b1824f0340ae4 https://www.encodeproject.org/files/ENCFF000QXH/@@download/ENCFF000QXH.bam hg19 released biological replicates with identical biosample ENCFF000QXI bam alignments ENCSR000BTA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ELF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QXU 1507469501 Richard Myers, HAIB 30b79f789e786c968272e127474f54e1 https://www.encodeproject.org/files/ENCFF000QXI/@@download/ENCFF000QXI.bam hg19 released biological replicates with identical biosample ENCFF000RXI bam alignments ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RXO 568634548 Vishwanath Iyer, UTA a101acf7b4e950d4a25f3cd6145c79e9 https://www.encodeproject.org/files/ENCFF000RXI/@@download/ENCFF000RXI.bam hg19 released biological replicates with identical biosample ENCFF000RXJ bam alignments ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RXS 425974314 Vishwanath Iyer, UTA 52200cbf05b45620110631c7b0bf6100 https://www.encodeproject.org/files/ENCFF000RXJ/@@download/ENCFF000RXJ.bam hg19 released biological replicates with identical biosample ENCFF895OPN bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 50 ENCFF567MSF, ENCFF807MUK 1384684414 ENCODE Processing Pipeline f296cf6b87ab5d090f02ea20a0f1ab37 https://www.encodeproject.org/files/ENCFF895OPN/@@download/ENCFF895OPN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF180TKR bam alignments ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 50 ENCFF051KMB, ENCFF807MUK 856714910 ENCODE Processing Pipeline 0337bed65675d5515c0b98e8e887148f https://www.encodeproject.org/files/ENCFF180TKR/@@download/ENCFF180TKR.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF767RBF bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YVA, ENCFF000YVB, ENCFF807MUK 147080853 ENCODE Processing Pipeline 80688aa914da300f6fa8f792d1d21ffa https://www.encodeproject.org/files/ENCFF767RBF/@@download/ENCFF767RBF.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF198JIR bam alignments ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YVV, ENCFF807MUK 158647685 ENCODE Processing Pipeline c33afa34d6b28256d1c01324d46df36f https://www.encodeproject.org/files/ENCFF198JIR/@@download/ENCFF198JIR.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF508CNG bam alignments ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 100 ENCFF207HTT, ENCFF244AUG, ENCFF807MUK 5077978418 ENCODE Processing Pipeline 8d9c29f1cc09c29c8ec58b3c5970b66e https://www.encodeproject.org/files/ENCFF508CNG/@@download/ENCFF508CNG.bam hg19 released antibody characterized with exemption ENCFF978VQG bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 50 ENCFF522PUA, ENCFF807MUK 730004538 ENCODE Processing Pipeline 69980d1c52840fafde38f032c74a1a02 https://www.encodeproject.org/files/ENCFF978VQG/@@download/ENCFF978VQG.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF595XJJ bam alignments ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 50 ENCFF094LXX, ENCFF807MUK 1289441081 ENCODE Processing Pipeline 382fc1e1eb4ff8ce287a8b43b394bc8b https://www.encodeproject.org/files/ENCFF595XJJ/@@download/ENCFF595XJJ.bam hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF229PFV bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WAZ, ENCFF807MUK 355414673 ENCODE Processing Pipeline d7eaca0a90dbe725755c1cfba651662c https://www.encodeproject.org/files/ENCFF229PFV/@@download/ENCFF229PFV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716DZQ bam alignments ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WBG, ENCFF807MUK 906580500 ENCODE Processing Pipeline fa0084a8bf986fb1df9dc92f53494f8a https://www.encodeproject.org/files/ENCFF716DZQ/@@download/ENCFF716DZQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000BZY bam alignments ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CAI 1128848624 Bradley Bernstein, Broad d09f9c4cf124705b1cd48ae69168bc1e https://www.encodeproject.org/files/ENCFF000BZY/@@download/ENCFF000BZY.bam hg19 released low read length, inconsistent platforms missing raw data in replicate ENCFF000XCB bam alignments ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XCW 1194084024 Michael Snyder, Stanford fade2a2fce5929178541d9063d4bb41d https://www.encodeproject.org/files/ENCFF000XCB/@@download/ENCFF000XCB.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XCE bam alignments ENCSR000EDG ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XCU 949129117 Michael Snyder, Stanford afb9130dffc9959110989da5fe0e4e47 https://www.encodeproject.org/files/ENCFF000XCE/@@download/ENCFF000XCE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNU bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WOF 252525576 Michael Snyder, Stanford a8608c58ccf72be1403a5029118eeeb5 https://www.encodeproject.org/files/ENCFF000WNU/@@download/ENCFF000WNU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNV bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WOC 259606302 Michael Snyder, Stanford 92e0a8655b4f2cf3d4fb037880e6a3f9 https://www.encodeproject.org/files/ENCFF000WNV/@@download/ENCFF000WNV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNW bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WOL 363311792 Michael Snyder, Stanford aec3ac44766f1f5b4de769b191c1ccc1 https://www.encodeproject.org/files/ENCFF000WNW/@@download/ENCFF000WNW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WNY bam alignments ENCSR000EBC ChIP-seq EFO:0005349 GM18951 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WOB 166671263 Michael Snyder, Stanford aaebddf02afa39502a28a4054d4922a8 https://www.encodeproject.org/files/ENCFF000WNY/@@download/ENCFF000WNY.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XOF bam alignments ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XOM 349919297 Kevin Struhl, HMS 6a7dae081677f602cebb4ac8fb13bc07 https://www.encodeproject.org/files/ENCFF000XOF/@@download/ENCFF000XOF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XOH bam alignments ENCSR000DNT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XON 340658014 Kevin Struhl, HMS 28f68427e5377e8ece0f066c5e46f1a9 https://www.encodeproject.org/files/ENCFF000XOH/@@download/ENCFF000XOH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF704SGZ bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PTU, ENCFF807MUK 901805194 ENCODE Processing Pipeline 9c6bdcd0309f54cce268d34e5c0b8d90 https://www.encodeproject.org/files/ENCFF704SGZ/@@download/ENCFF704SGZ.bam hg19 released low read depth biological replicates with identical biosample ENCFF839FNS bam alignments ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PTV, ENCFF807MUK 981279339 ENCODE Processing Pipeline 673b366e8d8806594b205150b12b4bb8 https://www.encodeproject.org/files/ENCFF839FNS/@@download/ENCFF839FNS.bam hg19 released low read depth biological replicates with identical biosample ENCFF210NXE bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF702MJJ, ENCFF807MUK 191122093 ENCODE Processing Pipeline 46a760492ff637337a0d0fcfe106baaf https://www.encodeproject.org/files/ENCFF210NXE/@@download/ENCFF210NXE.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF965GBZ bam alignments ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF942JXG 704396288 ENCODE Processing Pipeline 9554700a3210215fafd8162be54ba0de https://www.encodeproject.org/files/ENCFF965GBZ/@@download/ENCFF965GBZ.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF679HGX bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 50 ENCFF807MUK, ENCFF946YUW 902635311 ENCODE Processing Pipeline 60cb2508d4df87d98e8e405a956afad3 https://www.encodeproject.org/files/ENCFF679HGX/@@download/ENCFF679HGX.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF509HEN bam alignments ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 50 ENCFF572ILR, ENCFF807MUK 1241164875 ENCODE Processing Pipeline bd7a82e082076e15490a8c859c3ac549 https://www.encodeproject.org/files/ENCFF509HEN/@@download/ENCFF509HEN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF509UIP bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WSS, ENCFF807MUK 649681422 ENCODE Processing Pipeline 1ef9484f65315fe669b544c3506a6199 https://www.encodeproject.org/files/ENCFF509UIP/@@download/ENCFF509UIP.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF211HZM bam alignments ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WSQ, ENCFF807MUK 915917420 ENCODE Processing Pipeline 61de88b2a1a5d5199ad34338a48756f8 https://www.encodeproject.org/files/ENCFF211HZM/@@download/ENCFF211HZM.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF197DUH bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NTD, ENCFF807MUK 602023696 ENCODE Processing Pipeline d0dd6cf2fb23ac07a469f78a48d255fe https://www.encodeproject.org/files/ENCFF197DUH/@@download/ENCFF197DUH.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF671MIT bam alignments ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NTH, ENCFF807MUK 653477560 ENCODE Processing Pipeline 269bab4ee54ad9d3479c0b3d763640b3 https://www.encodeproject.org/files/ENCFF671MIT/@@download/ENCFF671MIT.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000QOQ bam alignments ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QPH 2024399663 Richard Myers, HAIB 24744a2dad28411511cf0ad0a440e1d2 https://www.encodeproject.org/files/ENCFF000QOQ/@@download/ENCFF000QOQ.bam hg19 released biological replicates with identical biosample ENCFF000QOR bam alignments ENCSR000BSP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QPE 824362608 Richard Myers, HAIB 93220675d33f92d751871252a688d720 https://www.encodeproject.org/files/ENCFF000QOR/@@download/ENCFF000QOR.bam hg19 released biological replicates with identical biosample ENCFF788NMA bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MXC, ENCFF807MUK 909112611 ENCODE Processing Pipeline 0b1c58d7c594b6d6dbddf3fcaaf1fb1d https://www.encodeproject.org/files/ENCFF788NMA/@@download/ENCFF788NMA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF678LJA bam alignments ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXD, ENCFF807MUK 1345084783 ENCODE Processing Pipeline 7badc1dae2189d419a9eb427967f357c https://www.encodeproject.org/files/ENCFF678LJA/@@download/ENCFF678LJA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF322EWR bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HLW, ENCFF807MUK 490382008 ENCODE Processing Pipeline b2bbea6b258430aff8120737ada4ef9b https://www.encodeproject.org/files/ENCFF322EWR/@@download/ENCFF322EWR.bam hg19 released control low read depth, low read length, low read depth ENCFF289VTR bam alignments ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HLV, ENCFF807MUK 565685711 ENCODE Processing Pipeline 28b960de867a06be8ca8ad57c82fbcfc https://www.encodeproject.org/files/ENCFF289VTR/@@download/ENCFF289VTR.bam hg19 released control low read depth, low read length, low read depth ENCFF820GCU bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PEH, ENCFF807MUK 607997635 ENCODE Processing Pipeline 60a6816f1a74ee1a677900ea201ef4fa https://www.encodeproject.org/files/ENCFF820GCU/@@download/ENCFF820GCU.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF813EGR bam alignments ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PEK, ENCFF807MUK 756237218 ENCODE Processing Pipeline 2212e368d7d1a2cb27f4fd52b62ee6e5 https://www.encodeproject.org/files/ENCFF813EGR/@@download/ENCFF813EGR.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000XAK bam alignments ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAD 1171686427 Kevin Struhl, HMS 14ead4631bd73df717b3bdca7aca4879 https://www.encodeproject.org/files/ENCFF000XAK/@@download/ENCFF000XAK.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAL bam alignments ENCSR000DNX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BDP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAE 1269788046 Kevin Struhl, HMS 677e5de1d07f62fb29e97c2b4f96b9c4 https://www.encodeproject.org/files/ENCFF000XAL/@@download/ENCFF000XAL.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF523DNB bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSA, ENCFF807MUK 637421868 ENCODE Processing Pipeline 2ba89bbb1d33a379d3215ce447b0e3f2 https://www.encodeproject.org/files/ENCFF523DNB/@@download/ENCFF523DNB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF871ASR bam alignments ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSH, ENCFF807MUK 1000467222 ENCODE Processing Pipeline ea9c79fe7a767ae317f4c8d10472980b https://www.encodeproject.org/files/ENCFF871ASR/@@download/ENCFF871ASR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000YJP bam alignments ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YKL 382820814 Sherman Weissman, Yale 14478d823fb0aa5ca708dcc0d31403da https://www.encodeproject.org/files/ENCFF000YJP/@@download/ENCFF000YJP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YJQ bam alignments ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YKM 341009148 Sherman Weissman, Yale 63ab7f517bf6817a12b43040f22339ff https://www.encodeproject.org/files/ENCFF000YJQ/@@download/ENCFF000YJQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF224HMM bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 50 ENCFF360HUQ, ENCFF807MUK 708853611 ENCODE Processing Pipeline 4092f6f4e2c6f9d225d1d268b90a0897 https://www.encodeproject.org/files/ENCFF224HMM/@@download/ENCFF224HMM.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF460ORU bam alignments ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 50 ENCFF432PVW, ENCFF807MUK 593265961 ENCODE Processing Pipeline ccff9e3b168897e603a029ac5ed1aae1 https://www.encodeproject.org/files/ENCFF460ORU/@@download/ENCFF460ORU.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF000XBT bam alignments ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBV 258343969 Michael Snyder, Stanford 2b2c436a1c26f578416ce1e8fe81a374 https://www.encodeproject.org/files/ENCFF000XBT/@@download/ENCFF000XBT.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBW bam alignments ENCSR000ECP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBY 403985587 Michael Snyder, Stanford 41d1074cab97f8c1bdb3a3a9958aa948 https://www.encodeproject.org/files/ENCFF000XBW/@@download/ENCFF000XBW.bam hg19 released low read length biological replicates with identical biosample ENCFF208RHL bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGQ, ENCFF807MUK 532468255 ENCODE Processing Pipeline 065b8e34bfdb60de3d20275dbd23fa91 https://www.encodeproject.org/files/ENCFF208RHL/@@download/ENCFF208RHL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF404XBY bam alignments ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGN, ENCFF807MUK 645855411 ENCODE Processing Pipeline 07d739cd1033e6c6ed6602cb95f7d507 https://www.encodeproject.org/files/ENCFF404XBY/@@download/ENCFF404XBY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF154TCG bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIH, ENCFF807MUK 590045503 ENCODE Processing Pipeline 6e87028ba46303f4950df8358a43c2b9 https://www.encodeproject.org/files/ENCFF154TCG/@@download/ENCFF154TCG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF191RAG bam alignments ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIK, ENCFF807MUK 860305916 ENCODE Processing Pipeline 9f8edb12e0d7594294955db058799275 https://www.encodeproject.org/files/ENCFF191RAG/@@download/ENCFF191RAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF092XNX bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPW, ENCFF807MUK 218390667 ENCODE Processing Pipeline 78eeb392d263d16dfa42b4cdd941559c https://www.encodeproject.org/files/ENCFF092XNX/@@download/ENCFF092XNX.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF204HNK bam alignments ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPU, ENCFF807MUK 317623579 ENCODE Processing Pipeline d2882ea90f1c2722c424e6d0fc8dbc05 https://www.encodeproject.org/files/ENCFF204HNK/@@download/ENCFF204HNK.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF263AQI bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GXW, ENCFF807MUK 847310833 ENCODE Processing Pipeline 4344370e42bb112d21735f1ae397075f https://www.encodeproject.org/files/ENCFF263AQI/@@download/ENCFF263AQI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF812WDD bam alignments ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GXV, ENCFF807MUK 656906996 ENCODE Processing Pipeline 0431cc5042e78a534d316979b696761f https://www.encodeproject.org/files/ENCFF812WDD/@@download/ENCFF812WDD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF577VTU bam alignments ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 50 ENCFF112JMO, ENCFF807MUK 800612942 ENCODE Processing Pipeline cf7b61dd18d3507ea28125f3e2683647 https://www.encodeproject.org/files/ENCFF577VTU/@@download/ENCFF577VTU.bam hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF805INP bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 36 ENCFF807MUK, ENCFF979OQS 844811811 ENCODE Processing Pipeline 6597b8f9c7526632626268a1894a7cf7 https://www.encodeproject.org/files/ENCFF805INP/@@download/ENCFF805INP.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF878IXK bam alignments ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 36 ENCFF529XNL, ENCFF807MUK 756692158 ENCODE Processing Pipeline 01cad27cbc497aa4081fc6793ecbd44e https://www.encodeproject.org/files/ENCFF878IXK/@@download/ENCFF878IXK.bam hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF800DAY bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 100 ENCFF109NTO, ENCFF693JKI, ENCFF807MUK 4500247179 ENCODE Processing Pipeline 910c7a064b27e26fea4bdb268bb377d7 https://www.encodeproject.org/files/ENCFF800DAY/@@download/ENCFF800DAY.bam hg19 released missing genetic modification characterization ENCFF465GPJ bam alignments ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 100 ENCFF016FNK, ENCFF018HQR, ENCFF807MUK 5182697564 ENCODE Processing Pipeline cf8301206a1fca0a2e466c90573af3cb https://www.encodeproject.org/files/ENCFF465GPJ/@@download/ENCFF465GPJ.bam hg19 released missing genetic modification characterization ENCFF000XDB bam alignments ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XDO 933279277 Peggy Farnham, USC c5394a36469626f06f06187d4ae9b175 https://www.encodeproject.org/files/ENCFF000XDB/@@download/ENCFF000XDB.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XDC bam alignments ENCSR000EVL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens E2F4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XDP 1075249347 Peggy Farnham, USC 1102aba1aa12ea60b5743c08c1a15bc1 https://www.encodeproject.org/files/ENCFF000XDC/@@download/ENCFF000XDC.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF548VNJ bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCD, ENCFF807MUK 775366247 ENCODE Processing Pipeline 7dc474927d0f3bf341e291fa9b138697 https://www.encodeproject.org/files/ENCFF548VNJ/@@download/ENCFF548VNJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF285CTQ bam alignments ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCF, ENCFF807MUK 769143379 ENCODE Processing Pipeline e758f7080b78ee4cb10231f00f46fd0a https://www.encodeproject.org/files/ENCFF285CTQ/@@download/ENCFF285CTQ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF969JNV bam alignments ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF158PZK, ENCFF748ZYI, ENCFF807MUK 2729992663 ENCODE Processing Pipeline a3e4ca6252f23c3edead1410867b0343 https://www.encodeproject.org/files/ENCFF969JNV/@@download/ENCFF969JNV.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000XZB bam alignments ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XZK 396955426 Peggy Farnham, USC 6dd2df33c6f167e3305b679a3b465b11 https://www.encodeproject.org/files/ENCFF000XZB/@@download/ENCFF000XZB.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XZC bam alignments ENCSR000EVS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XZJ 744548030 Peggy Farnham, USC c5a996871eaf0f5989b4b721154a8bc4 https://www.encodeproject.org/files/ENCFF000XZC/@@download/ENCFF000XZC.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF543CKI bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YTH, ENCFF807MUK 277724803 ENCODE Processing Pipeline 801af5973d0d6d3d34a97e45ebe8baff https://www.encodeproject.org/files/ENCFF543CKI/@@download/ENCFF543CKI.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF938QJA bam alignments ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YTF, ENCFF807MUK 688899678 ENCODE Processing Pipeline b1893be60d425d5fea9970831aadb8a2 https://www.encodeproject.org/files/ENCFF938QJA/@@download/ENCFF938QJA.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF209DDU bam alignments ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF643OCA, ENCFF658ZTF, ENCFF807MUK 4669879713 ENCODE Processing Pipeline 714a13af426dd852ce0be00811504acb https://www.encodeproject.org/files/ENCFF209DDU/@@download/ENCFF209DDU.bam hg19 released control low read depth, antibody characterized with exemption ENCFF000YKV bam alignments ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YMC 231692987 Sherman Weissman, Yale 205d55e12f2503bc870fbdae15e5ca16 https://www.encodeproject.org/files/ENCFF000YKV/@@download/ENCFF000YKV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YKW bam alignments ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YMB 219495782 Sherman Weissman, Yale 44bf30c30070e31cb3ab2a7691e8457c https://www.encodeproject.org/files/ENCFF000YKW/@@download/ENCFF000YKW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF585RLR bam alignments ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF414MWJ, ENCFF577YLD, ENCFF807MUK 4030434037 ENCODE Processing Pipeline 40ce4a103aef46394eac750087a01a43 https://www.encodeproject.org/files/ENCFF585RLR/@@download/ENCFF585RLR.bam hg19 released antibody characterized with exemption missing control alignments ENCFF958IJR bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000WDK, ENCFF807MUK 531677090 ENCODE Processing Pipeline 88602e4f44942dde62833d8b9ba7ff3b https://www.encodeproject.org/files/ENCFF958IJR/@@download/ENCFF958IJR.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF276QQY bam alignments ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000WDO, ENCFF807MUK 780697287 ENCODE Processing Pipeline b3333e6ac44a35c0601c1219383eecf1 https://www.encodeproject.org/files/ENCFF276QQY/@@download/ENCFF276QQY.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF299WPU bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PSD, ENCFF807MUK 551729673 ENCODE Processing Pipeline 2a645522ba6a6e680d718de35321d5d9 https://www.encodeproject.org/files/ENCFF299WPU/@@download/ENCFF299WPU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF925FRM bam alignments ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PSE, ENCFF807MUK 338725466 ENCODE Processing Pipeline 48a9fc8af9e42397be729ff011e40ed9 https://www.encodeproject.org/files/ENCFF925FRM/@@download/ENCFF925FRM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF101PTT bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OPK, ENCFF807MUK 719364958 ENCODE Processing Pipeline b522e490470e5d2e87d6c17b48f94fc2 https://www.encodeproject.org/files/ENCFF101PTT/@@download/ENCFF101PTT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF697QYW bam alignments ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OPL, ENCFF807MUK 749221691 ENCODE Processing Pipeline 1da3def2751f989482a9935df59c18bf https://www.encodeproject.org/files/ENCFF697QYW/@@download/ENCFF697QYW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF000SBC bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000SBI 1049577301 Vishwanath Iyer, UTA 3fc7a5fc647f75ec15397cbc8e731ffb https://www.encodeproject.org/files/ENCFF000SBC/@@download/ENCFF000SBC.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000SBD bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000SBK 1000273309 Vishwanath Iyer, UTA cac2f2ca52dc7f0a6448e3ccf2204205 https://www.encodeproject.org/files/ENCFF000SBD/@@download/ENCFF000SBD.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF339HEE bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SBK, ENCFF807MUK 805776082 ENCODE Processing Pipeline 567b6a952dd1346707f3753c1ad7add8 https://www.encodeproject.org/files/ENCFF339HEE/@@download/ENCFF339HEE.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF719UGN bam alignments ENCSR000DMT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SBI, ENCFF807MUK 877935626 ENCODE Processing Pipeline b388e680f28d590a38577b1175388866 https://www.encodeproject.org/files/ENCFF719UGN/@@download/ENCFF719UGN.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF570FPY bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VZL, ENCFF807MUK 517287432 ENCODE Processing Pipeline 6981524f7c55d436099a65ec5d1dbb34 https://www.encodeproject.org/files/ENCFF570FPY/@@download/ENCFF570FPY.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF442GDP bam alignments ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VZK, ENCFF807MUK 382598184 ENCODE Processing Pipeline d9c9e6d0eef35e9c0843fe468210d684 https://www.encodeproject.org/files/ENCFF442GDP/@@download/ENCFF442GDP.bam hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF847WER bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF350FRQ, ENCFF380VMM, ENCFF807MUK 1737028941 ENCODE Processing Pipeline 2369b10bc64d0b0b52cfc3dd558dee4f https://www.encodeproject.org/files/ENCFF847WER/@@download/ENCFF847WER.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF286IKC bam alignments ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF473ZWP, ENCFF807MUK 2088958857 ENCODE Processing Pipeline 82c0c496b08d1c870f11d2ecf4dd627d https://www.encodeproject.org/files/ENCFF286IKC/@@download/ENCFF286IKC.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF037DLB bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WWE, ENCFF807MUK 875421669 ENCODE Processing Pipeline ded9ecf4bbd3cfafdbb6cd94a045c941 https://www.encodeproject.org/files/ENCFF037DLB/@@download/ENCFF037DLB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF138HXG bam alignments ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WWC, ENCFF807MUK 933112020 ENCODE Processing Pipeline f13be172e07e28b2aef770d6b2d0d751 https://www.encodeproject.org/files/ENCFF138HXG/@@download/ENCFF138HXG.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF881TVG bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PPM, ENCFF807MUK 510268191 ENCODE Processing Pipeline 13d0fa62d53998834f6c1965e151d407 https://www.encodeproject.org/files/ENCFF881TVG/@@download/ENCFF881TVG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF300XQD bam alignments ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PPQ, ENCFF807MUK 1037084632 ENCODE Processing Pipeline 3ca78b4b3c3399f14d00d81319467a12 https://www.encodeproject.org/files/ENCFF300XQD/@@download/ENCFF300XQD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF236EOM bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HYT, ENCFF807MUK 423047672 ENCODE Processing Pipeline 5ca0c4eb1c949cf44b5849ea391cb5ea https://www.encodeproject.org/files/ENCFF236EOM/@@download/ENCFF236EOM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF720CUU bam alignments ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HYS, ENCFF807MUK 405268192 ENCODE Processing Pipeline 0650cb0ed3f6f5b081c9a40fac1b13d3 https://www.encodeproject.org/files/ENCFF720CUU/@@download/ENCFF720CUU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF465UCG bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOY, ENCFF807MUK 297874800 ENCODE Processing Pipeline 4da05d8fc8d1ef48310a5a81d6373ba0 https://www.encodeproject.org/files/ENCFF465UCG/@@download/ENCFF465UCG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF764OHG bam alignments ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOW, ENCFF807MUK 325114367 ENCODE Processing Pipeline da1a08a467db23ad3de385cc750d1191 https://www.encodeproject.org/files/ENCFF764OHG/@@download/ENCFF764OHG.bam hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000XIJ bam alignments ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XIM 339209912 Kevin Struhl, HMS 1f452f3d521dd745d68658b9f23e470a https://www.encodeproject.org/files/ENCFF000XIJ/@@download/ENCFF000XIJ.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIK bam alignments ENCSR000DNS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIO 264270925 Kevin Struhl, HMS b89bd5da6bc03e66549325cef7dcf566 https://www.encodeproject.org/files/ENCFF000XIK/@@download/ENCFF000XIK.bam hg19 released low read length biological replicates with identical biosample ENCFF645ZSW bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZBA, ENCFF807MUK 778551098 ENCODE Processing Pipeline fc305d51601094e0213617d79188ef4e https://www.encodeproject.org/files/ENCFF645ZSW/@@download/ENCFF645ZSW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF676WXJ bam alignments ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZAY, ENCFF807MUK 854465237 ENCODE Processing Pipeline f23a65cfceac4edd1463d9a1427eb6ae https://www.encodeproject.org/files/ENCFF676WXJ/@@download/ENCFF676WXJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF741GJT bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWN, ENCFF807MUK 193322961 ENCODE Processing Pipeline 6348049b1599e5d8d7a368e0e8612e46 https://www.encodeproject.org/files/ENCFF741GJT/@@download/ENCFF741GJT.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF697SEU bam alignments ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QWQ, ENCFF807MUK 1368908191 ENCODE Processing Pipeline 2c2a31ed1b96db0d6a7f35b31f3dd4e2 https://www.encodeproject.org/files/ENCFF697SEU/@@download/ENCFF697SEU.bam hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF000WOW bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WPB 243514244 Michael Snyder, Stanford 7946574ea00b22fe54350128531685fa https://www.encodeproject.org/files/ENCFF000WOW/@@download/ENCFF000WOW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOX bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WPD 192102932 Michael Snyder, Stanford c49a66d3d267f713d8c8bc494f864718 https://www.encodeproject.org/files/ENCFF000WOX/@@download/ENCFF000WOX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WOZ bam alignments ENCSR000EBG ChIP-seq EFO:0005350 GM19099 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WPL 946355223 Michael Snyder, Stanford 0df1bd7a6de3a7ab60db830ce51ee62d https://www.encodeproject.org/files/ENCFF000WOZ/@@download/ENCFF000WOZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF491VFV bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPU, ENCFF807MUK 224801979 ENCODE Processing Pipeline d8397283389670a35c4f08ea78ae7ec7 https://www.encodeproject.org/files/ENCFF491VFV/@@download/ENCFF491VFV.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF040WTG bam alignments ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQE, ENCFF807MUK 426781854 ENCODE Processing Pipeline 672b7af54a9a265a9ebffe23d012ab68 https://www.encodeproject.org/files/ENCFF040WTG/@@download/ENCFF040WTG.bam hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF638QOI bam alignments ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ONH, ENCFF807MUK 456453092 ENCODE Processing Pipeline 4c0963969d6ceea96220e13be1b87cb0 https://www.encodeproject.org/files/ENCFF638QOI/@@download/ENCFF638QOI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF743JWE bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPQ, ENCFF807MUK 271314781 ENCODE Processing Pipeline 9dc27cb21a1a01b7c97cd83e3f789eb3 https://www.encodeproject.org/files/ENCFF743JWE/@@download/ENCFF743JWE.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF583QFG bam alignments ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPO, ENCFF807MUK 480136451 ENCODE Processing Pipeline a7b75d298c99beea23ef656f02268cdb https://www.encodeproject.org/files/ENCFF583QFG/@@download/ENCFF583QFG.bam hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF144ODF bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000SBO, ENCFF807MUK 684044032 ENCODE Processing Pipeline 570a7e40989ae4ea242aa7d1686f5460 https://www.encodeproject.org/files/ENCFF144ODF/@@download/ENCFF144ODF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF548KMY bam alignments ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000SBP, ENCFF807MUK 807779634 ENCODE Processing Pipeline 755d50eaa54e928b27c84d52c99209d7 https://www.encodeproject.org/files/ENCFF548KMY/@@download/ENCFF548KMY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF282OJT bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YSZ, ENCFF807MUK 399585274 ENCODE Processing Pipeline 56a11e45edd36f6a59c68bb56307a5c8 https://www.encodeproject.org/files/ENCFF282OJT/@@download/ENCFF282OJT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF997OPU bam alignments ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YTA, ENCFF807MUK 367996924 ENCODE Processing Pipeline 27a6a81acebd4291fbde90ea071ce740 https://www.encodeproject.org/files/ENCFF997OPU/@@download/ENCFF997OPU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF714RHW bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CFW, ENCFF807MUK 452475294 ENCODE Processing Pipeline 9d1a48142f90145d9a8df614892653b1 https://www.encodeproject.org/files/ENCFF714RHW/@@download/ENCFF714RHW.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF717LQB bam alignments ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CFV, ENCFF807MUK 265803513 ENCODE Processing Pipeline 49e5b253f7d529f372d72d9ffeb71899 https://www.encodeproject.org/files/ENCFF717LQB/@@download/ENCFF717LQB.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF001HBB bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBY 236911714 John Stamatoyannopoulos, UW 55766f730df5b3939105070ad9de4aa1 https://www.encodeproject.org/files/ENCFF001HBB/@@download/ENCFF001HBB.bam hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF277HVR bam alignments ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 28 ENCFF001HBY, ENCFF807MUK 195492482 ENCODE Processing Pipeline deaf2ef74074e3e098c98b948bd5ac79 https://www.encodeproject.org/files/ENCFF277HVR/@@download/ENCFF277HVR.bam hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF000WCN bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WDI 1060629790 Michael Snyder, Stanford 9b9a447f326a130e810d045599378b34 https://www.encodeproject.org/files/ENCFF000WCN/@@download/ENCFF000WCN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCQ bam alignments ENCSR000EAC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WDJ 960017536 Michael Snyder, Stanford 0f4a80b2b374596e519e645c2fe25919 https://www.encodeproject.org/files/ENCFF000WCQ/@@download/ENCFF000WCQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XAN bam alignments ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAS 1331703572 Kevin Struhl, HMS 8f6b619b42b837eca439d50f984d90f6 https://www.encodeproject.org/files/ENCFF000XAN/@@download/ENCFF000XAN.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAO bam alignments ENCSR000DNW ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAU 1307672053 Kevin Struhl, HMS e358c50025304cc44c5eecf97fb60879 https://www.encodeproject.org/files/ENCFF000XAO/@@download/ENCFF000XAO.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF526QOE bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WVE, ENCFF807MUK 1058560092 ENCODE Processing Pipeline 1ddfdeb0ac8f28dbc97cdbf1b556d2dc https://www.encodeproject.org/files/ENCFF526QOE/@@download/ENCFF526QOE.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF425RJE bam alignments ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WVG, ENCFF807MUK 933382533 ENCODE Processing Pipeline fe51cbaac3115a1d63cbf424899238ad https://www.encodeproject.org/files/ENCFF425RJE/@@download/ENCFF425RJE.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF601TQG bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YAA, ENCFF807MUK 315044988 ENCODE Processing Pipeline 592bd53e5a50250b6e7fe8610c3e1d3b https://www.encodeproject.org/files/ENCFF601TQG/@@download/ENCFF601TQG.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF742DJF bam alignments ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YAE, ENCFF807MUK 1066670665 ENCODE Processing Pipeline 142253497928e4e9db23168676c73680 https://www.encodeproject.org/files/ENCFF742DJF/@@download/ENCFF742DJF.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF994UGO bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PIM, ENCFF807MUK 497686506 ENCODE Processing Pipeline a0b1d98420a49411e560f62fe856f36c https://www.encodeproject.org/files/ENCFF994UGO/@@download/ENCFF994UGO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF074KQO bam alignments ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PIJ, ENCFF807MUK 621446426 ENCODE Processing Pipeline 8ddbbfbbe3d273aebde5c5a412228ad6 https://www.encodeproject.org/files/ENCFF074KQO/@@download/ENCFF074KQO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF902HRT bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NLU, ENCFF807MUK 351750846 ENCODE Processing Pipeline 88c6db8a1daef2c61d7a78bfef5560ea https://www.encodeproject.org/files/ENCFF902HRT/@@download/ENCFF902HRT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF277EKP bam alignments ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NLT, ENCFF807MUK 531120311 ENCODE Processing Pipeline f53f136d47c087f6898016ec8d67b6d0 https://www.encodeproject.org/files/ENCFF277EKP/@@download/ENCFF277EKP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF319RMX bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OWE, ENCFF807MUK 543967087 ENCODE Processing Pipeline 3d3c21529f02d4a7b5cb8a26189ee65e https://www.encodeproject.org/files/ENCFF319RMX/@@download/ENCFF319RMX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF410CQF bam alignments ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OWL, ENCFF807MUK 541217998 ENCODE Processing Pipeline 5da80a733e224b5b834d1f4f0345674e https://www.encodeproject.org/files/ENCFF410CQF/@@download/ENCFF410CQF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF710MZA bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PTF, ENCFF807MUK 508341634 ENCODE Processing Pipeline 72978fda62a1e6e08182ea0b4b91f399 https://www.encodeproject.org/files/ENCFF710MZA/@@download/ENCFF710MZA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF030JIY bam alignments ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PTI, ENCFF807MUK 476261681 ENCODE Processing Pipeline dbd67bb82a1ce0eef26f366b0a2ca964 https://www.encodeproject.org/files/ENCFF030JIY/@@download/ENCFF030JIY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF522NKK bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUI, ENCFF807MUK 797544118 ENCODE Processing Pipeline 1f0842f9d3befe43eb05abb8e7dd7ef7 https://www.encodeproject.org/files/ENCFF522NKK/@@download/ENCFF522NKK.bam hg19 released low read depth biological replicates with identical biosample ENCFF052RMO bam alignments ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUJ, ENCFF807MUK 1063295458 ENCODE Processing Pipeline 0e2586d38072797fdd4d69443c45e734 https://www.encodeproject.org/files/ENCFF052RMO/@@download/ENCFF052RMO.bam hg19 released low read depth biological replicates with identical biosample ENCFF000PWE bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000PWX 720538081 Richard Myers, HAIB ebaf8016dcf3df3de025e1252e3c8702 https://www.encodeproject.org/files/ENCFF000PWE/@@download/ENCFF000PWE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000PWF bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000PWM 557536240 Richard Myers, HAIB 51666bc2804b2fe5ab82358780541359 https://www.encodeproject.org/files/ENCFF000PWF/@@download/ENCFF000PWF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF477WUN bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWM, ENCFF807MUK 397215851 ENCODE Processing Pipeline 000529a709d164a7b08e8d9381b02c07 https://www.encodeproject.org/files/ENCFF477WUN/@@download/ENCFF477WUN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF144FIS bam alignments ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWX, ENCFF807MUK 538905345 ENCODE Processing Pipeline 4ccc9f5f42e756338655459cb70233c1 https://www.encodeproject.org/files/ENCFF144FIS/@@download/ENCFF144FIS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF000XAX bam alignments ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBE 933024698 Kevin Struhl, HMS 4e9281a4cec60a5d058e1940049faaef https://www.encodeproject.org/files/ENCFF000XAX/@@download/ENCFF000XAX.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XAY bam alignments ENCSR000DNV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBD 1325513142 Kevin Struhl, HMS 875d40aa28a00c7bbd88386109d9e85d https://www.encodeproject.org/files/ENCFF000XAY/@@download/ENCFF000XAY.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF461OLA bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 100 ENCFF005NCE, ENCFF807MUK, ENCFF932SKI 3146705378 ENCODE Processing Pipeline 0f905647ac8e561ba2789e60ce7dd7d7 https://www.encodeproject.org/files/ENCFF461OLA/@@download/ENCFF461OLA.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF207OPF bam alignments ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 100 ENCFF093OLE, ENCFF505YGU, ENCFF807MUK 3516175934 ENCODE Processing Pipeline 2a2a853e3f5f8c4483f2cf97e3456681 https://www.encodeproject.org/files/ENCFF207OPF/@@download/ENCFF207OPF.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF000YWV bam alignments ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YXH 325430434 Sherman Weissman, Yale 646fb37d23ddb941fda0834fae292c6a https://www.encodeproject.org/files/ENCFF000YWV/@@download/ENCFF000YWV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YWW bam alignments ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YXG 344769705 Sherman Weissman, Yale 719a43b38965fa74b8e6325f7dd6b214 https://www.encodeproject.org/files/ENCFF000YWW/@@download/ENCFF000YWW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF581YGH bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000WEY, ENCFF807MUK 539830788 ENCODE Processing Pipeline 677f911e7790afd53e66e8b7f0894310 https://www.encodeproject.org/files/ENCFF581YGH/@@download/ENCFF581YGH.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF665YWG bam alignments ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000WFA, ENCFF807MUK 666273860 ENCODE Processing Pipeline f6e8abd753b585ccf0fd3ddcd352dde3 https://www.encodeproject.org/files/ENCFF665YWG/@@download/ENCFF665YWG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF178KOP bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF148AGP, ENCFF807MUK 284217596 ENCODE Processing Pipeline e3a1db0183e4e7b8fab4f57dda7b1217 https://www.encodeproject.org/files/ENCFF178KOP/@@download/ENCFF178KOP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF707DNG bam alignments ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF343WXI, ENCFF807MUK 993905329 ENCODE Processing Pipeline 468f6bd38d268bbbf48ac3ccdf110424 https://www.encodeproject.org/files/ENCFF707DNG/@@download/ENCFF707DNG.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF972AUH bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZAQ, ENCFF807MUK 235286184 ENCODE Processing Pipeline 5d5f858a0b36798f165a0fac4b6981e1 https://www.encodeproject.org/files/ENCFF972AUH/@@download/ENCFF972AUH.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF113JSN bam alignments ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAR, ENCFF807MUK 300165456 ENCODE Processing Pipeline 7821d7dc466977211bfb0cb7b00648f2 https://www.encodeproject.org/files/ENCFF113JSN/@@download/ENCFF113JSN.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000REK bam alignments ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REX 949642149 Richard Myers, HAIB 8366f8ddcdbc9c438da05cfb247c3a5b https://www.encodeproject.org/files/ENCFF000REK/@@download/ENCFF000REK.bam hg19 released biological replicates with identical biosample ENCFF000REN bam alignments ENCSR000BSM ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens YY1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REZ 1669372767 Richard Myers, HAIB 754a081816d92e619fc4999a4c44e833 https://www.encodeproject.org/files/ENCFF000REN/@@download/ENCFF000REN.bam hg19 released biological replicates with identical biosample ENCFF563ODJ bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUR, ENCFF807MUK 728147801 ENCODE Processing Pipeline 6538c9d2d5f232fc85c269dca546346e https://www.encodeproject.org/files/ENCFF563ODJ/@@download/ENCFF563ODJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF092KAW bam alignments ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUS, ENCFF807MUK 897966734 ENCODE Processing Pipeline 01d090012136574a07c0b9449c48cca7 https://www.encodeproject.org/files/ENCFF092KAW/@@download/ENCFF092KAW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OYF bam alignments ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYS 1356402644 Richard Myers, HAIB 9145fd38750713b015e3a19728f8cdb8 https://www.encodeproject.org/files/ENCFF000OYF/@@download/ENCFF000OYF.bam hg19 released biological replicates with identical biosample ENCFF000OYK bam alignments ENCSR000BSD ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYU 1439543084 Richard Myers, HAIB 734cadfd39b57f04581f429a83057e59 https://www.encodeproject.org/files/ENCFF000OYK/@@download/ENCFF000OYK.bam hg19 released biological replicates with identical biosample ENCFF000QOC bam alignments ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QOS 2253044486 Richard Myers, HAIB aa83e7c504b1cb6ee13ce05ca0d337cc https://www.encodeproject.org/files/ENCFF000QOC/@@download/ENCFF000QOC.bam hg19 released biological replicates with identical biosample ENCFF000QOH bam alignments ENCSR000BUL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QON 598903917 Richard Myers, HAIB 450d00cf09edb2a974602b5283d29d6f https://www.encodeproject.org/files/ENCFF000QOH/@@download/ENCFF000QOH.bam hg19 released biological replicates with identical biosample ENCFF517CBX bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CRA, ENCFF807MUK 1134450104 ENCODE Processing Pipeline e7ead566562ebc4ceadb0d864e732544 https://www.encodeproject.org/files/ENCFF517CBX/@@download/ENCFF517CBX.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF874IUN bam alignments ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CRB, ENCFF807MUK 1309700441 ENCODE Processing Pipeline 10b3353f93483afe951bf634da85068f https://www.encodeproject.org/files/ENCFF874IUN/@@download/ENCFF874IUN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF051OWS bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VXS, ENCFF807MUK 814061336 ENCODE Processing Pipeline f1b9ee1c53d67ee8b252bbf8743f3cc7 https://www.encodeproject.org/files/ENCFF051OWS/@@download/ENCFF051OWS.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF950RDW bam alignments ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VXQ, ENCFF807MUK 848095635 ENCODE Processing Pipeline 04debf7c96dde160ae5529ef3ae6a2bc https://www.encodeproject.org/files/ENCFF950RDW/@@download/ENCFF950RDW.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF840IOC bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 50 ENCFF659AFH, ENCFF807MUK 865886259 ENCODE Processing Pipeline 4b9f7e56fcb62f62d34227f61dc7e817 https://www.encodeproject.org/files/ENCFF840IOC/@@download/ENCFF840IOC.bam hg19 released low read depth, antibody characterized with exemption ENCFF572PHE bam alignments ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 50 ENCFF807MUK, ENCFF944THM 1455091884 ENCODE Processing Pipeline cb15bb9a0d9dc3c0fda8b4df1b963217 https://www.encodeproject.org/files/ENCFF572PHE/@@download/ENCFF572PHE.bam hg19 released low read depth, antibody characterized with exemption ENCFF031PSI bam alignments ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZD, ENCFF807MUK 598052651 ENCODE Processing Pipeline 7a1ccac33042772a469c3beb63e33b8e https://www.encodeproject.org/files/ENCFF031PSI/@@download/ENCFF031PSI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF719VRZ bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 100 ENCFF185SQN, ENCFF807MUK, ENCFF848FDX 3156315242 ENCODE Processing Pipeline 7eea5bae872526e5e703cc45e5d5e66f https://www.encodeproject.org/files/ENCFF719VRZ/@@download/ENCFF719VRZ.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF531EIP bam alignments ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 100 ENCFF683NIW, ENCFF807MUK, ENCFF926JSG 4399151751 ENCODE Processing Pipeline 8341afadc1c8aab19792875e419b83be https://www.encodeproject.org/files/ENCFF531EIP/@@download/ENCFF531EIP.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF788CTS bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPE, ENCFF807MUK 285220741 ENCODE Processing Pipeline 686df9f5163b705a3a63433754eeaa44 https://www.encodeproject.org/files/ENCFF788CTS/@@download/ENCFF788CTS.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF278NAG bam alignments ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPG, ENCFF807MUK 338023760 ENCODE Processing Pipeline f3a03006934aa7929e816df99a79ae98 https://www.encodeproject.org/files/ENCFF278NAG/@@download/ENCFF278NAG.bam hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF025EMH bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PVB, ENCFF807MUK 206443628 ENCODE Processing Pipeline 782b319c313a9ae697122ebed824be32 https://www.encodeproject.org/files/ENCFF025EMH/@@download/ENCFF025EMH.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF744BNI bam alignments ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PVD, ENCFF807MUK 497302690 ENCODE Processing Pipeline 98014e5564d7c0a04b9758d445ac079d https://www.encodeproject.org/files/ENCFF744BNI/@@download/ENCFF744BNI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000QZB bam alignments ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QZN 1308785872 Richard Myers, HAIB 4f9f33dc4924e842655927721d7ca736 https://www.encodeproject.org/files/ENCFF000QZB/@@download/ENCFF000QZB.bam hg19 released biological replicates with identical biosample ENCFF000QZE bam alignments ENCSR000BVD ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZQ 1356106884 Richard Myers, HAIB d7f2595a353d922114482b9de87a5c4a https://www.encodeproject.org/files/ENCFF000QZE/@@download/ENCFF000QZE.bam hg19 released biological replicates with identical biosample ENCFF565NDL bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 32 ENCFF000ZTO, ENCFF807MUK 1309108358 ENCODE Processing Pipeline 4cc269f1b5546ad51c86f736395f8d76 https://www.encodeproject.org/files/ENCFF565NDL/@@download/ENCFF565NDL.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF495IVB bam alignments ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 32 ENCFF000ZTJ, ENCFF807MUK 662003363 ENCODE Processing Pipeline 9cf37d9df832484dbde58b41750f835e https://www.encodeproject.org/files/ENCFF495IVB/@@download/ENCFF495IVB.bam hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF534JTX bam alignments ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF016QKU, ENCFF581WJA, ENCFF807MUK 3658735673 ENCODE Processing Pipeline 65f40988757c82c4416f6d148e4453a9 https://www.encodeproject.org/files/ENCFF534JTX/@@download/ENCFF534JTX.bam hg19 released antibody characterized with exemption missing control alignments ENCFF012SRD bam alignments ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF094UFQ, ENCFF120IAI, ENCFF807MUK 5369163674 ENCODE Processing Pipeline 6933ba0c577230328430a95145f3f347 https://www.encodeproject.org/files/ENCFF012SRD/@@download/ENCFF012SRD.bam hg19 released antibody characterized with exemption missing control alignments ENCFF000RUK bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RUR 283418979 Vishwanath Iyer, UTA d18a64ffdb81931877c11a0020670ee9 https://www.encodeproject.org/files/ENCFF000RUK/@@download/ENCFF000RUK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUL bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RUT 326505549 Vishwanath Iyer, UTA 1297a5ffc620f1c90726ca6fffa8b0c1 https://www.encodeproject.org/files/ENCFF000RUL/@@download/ENCFF000RUL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RUN bam alignments ENCSR000DLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF000RUY 366776531 Vishwanath Iyer, UTA 302e27359693d38d8ffdb3d6e5657381 https://www.encodeproject.org/files/ENCFF000RUN/@@download/ENCFF000RUN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF259DRG bam alignments ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF125ONW, ENCFF725BGJ, ENCFF807MUK 5801177544 ENCODE Processing Pipeline 290519ac9ddf2083a656e1e0e3c5964b https://www.encodeproject.org/files/ENCFF259DRG/@@download/ENCFF259DRG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF846HET bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAL, ENCFF807MUK 425775732 ENCODE Processing Pipeline b4f46eb04e7a9c6d84feca0d2c80b88f https://www.encodeproject.org/files/ENCFF846HET/@@download/ENCFF846HET.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF670JGI bam alignments ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAN, ENCFF807MUK 510329046 ENCODE Processing Pipeline c87cb41a41094e133dd0b0b1003606e2 https://www.encodeproject.org/files/ENCFF670JGI/@@download/ENCFF670JGI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000RVK bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVR 368812135 Vishwanath Iyer, UTA 700ce1f6710422d57b69106ee0dd3203 https://www.encodeproject.org/files/ENCFF000RVK/@@download/ENCFF000RVK.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000RVM bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RVW 534906729 Vishwanath Iyer, UTA 2106c8f9eeb67d68b6057d6c9e3f7187 https://www.encodeproject.org/files/ENCFF000RVM/@@download/ENCFF000RVM.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF425DIJ bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 35 ENCFF000RVR, ENCFF807MUK 144146085 ENCODE Processing Pipeline 51c8e2eec0e2660a760b563d80e98740 https://www.encodeproject.org/files/ENCFF425DIJ/@@download/ENCFF425DIJ.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF029MNN bam alignments ENCSR000DLV ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 35 ENCFF000RVW, ENCFF807MUK 340943541 ENCODE Processing Pipeline 212508648e4d18291f4ac99ad599d959 https://www.encodeproject.org/files/ENCFF029MNN/@@download/ENCFF029MNN.bam hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length extremely low read depth ENCFF000XRP bam alignments ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRT 207141228 Michael Snyder, Stanford 5d293613c67c62e8f0cbfd81d478fd6c https://www.encodeproject.org/files/ENCFF000XRP/@@download/ENCFF000XRP.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRQ bam alignments ENCSR000EEU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour HNF4A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XSM 286626728 Michael Snyder, Stanford ba5f509d125b3cfce4552ceaf6ca86af https://www.encodeproject.org/files/ENCFF000XRQ/@@download/ENCFF000XRQ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF373VAU bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 101 ENCFF205WLT, ENCFF638IWT, ENCFF807MUK 5003144334 ENCODE Processing Pipeline a886c300376b196481e2978e77a2adb5 https://www.encodeproject.org/files/ENCFF373VAU/@@download/ENCFF373VAU.bam hg19 released missing genetic modification characterization missing control alignments ENCFF443BJC bam alignments ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 101 ENCFF196AWV, ENCFF676BSD, ENCFF807MUK 5960980544 ENCODE Processing Pipeline b0d7f66fccb049dd8ead0cee41b5a660 https://www.encodeproject.org/files/ENCFF443BJC/@@download/ENCFF443BJC.bam hg19 released missing genetic modification characterization missing control alignments ENCFF080UUC bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000VSY, ENCFF807MUK 485061569 ENCODE Processing Pipeline 54c5da4242922791f420f81568ae65c1 https://www.encodeproject.org/files/ENCFF080UUC/@@download/ENCFF080UUC.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF042ZNZ bam alignments ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000VTI, ENCFF807MUK 642945390 ENCODE Processing Pipeline a4e599b819cc5b96002ec94d76e5ba05 https://www.encodeproject.org/files/ENCFF042ZNZ/@@download/ENCFF042ZNZ.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF786FUF bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPS, ENCFF807MUK 262031142 ENCODE Processing Pipeline c0a28408e16a7e8d6d0db1a8e2339f5f https://www.encodeproject.org/files/ENCFF786FUF/@@download/ENCFF786FUF.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF856BHN bam alignments ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPT, ENCFF807MUK 367573338 ENCODE Processing Pipeline c0e6b0df5474d54d3814081a4fdee07e https://www.encodeproject.org/files/ENCFF856BHN/@@download/ENCFF856BHN.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF935VDG bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HIV, ENCFF807MUK 433826484 ENCODE Processing Pipeline cef5df4a191c4a8031d1ee73d455c6bb https://www.encodeproject.org/files/ENCFF935VDG/@@download/ENCFF935VDG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF022ACL bam alignments ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HJE, ENCFF807MUK 816813498 ENCODE Processing Pipeline 1b6f1f6c5cce3720f74686673672b875 https://www.encodeproject.org/files/ENCFF022ACL/@@download/ENCFF022ACL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF066FGA bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YCM, ENCFF807MUK 580487204 ENCODE Processing Pipeline 88f2d8229aeb920e1ad440ec60691179 https://www.encodeproject.org/files/ENCFF066FGA/@@download/ENCFF066FGA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF847VPR bam alignments ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YCK, ENCFF807MUK 637328827 ENCODE Processing Pipeline c06724c19848b14165c39d8ae9b99a01 https://www.encodeproject.org/files/ENCFF847VPR/@@download/ENCFF847VPR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF162SNW bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF061EJH, ENCFF252NFT, ENCFF523HNT, ENCFF807MUK 3031809268 ENCODE Processing Pipeline 8641ac4be18da909dc41b6f4c0185e9e https://www.encodeproject.org/files/ENCFF162SNW/@@download/ENCFF162SNW.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF536QLT bam alignments ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 3 36 ENCFF003KFS, ENCFF807MUK 1182699305 ENCODE Processing Pipeline b3a22445419097bdbfad531814915440 https://www.encodeproject.org/files/ENCFF536QLT/@@download/ENCFF536QLT.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF987CLO bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HVA, ENCFF807MUK 638539649 ENCODE Processing Pipeline ffdfa606b9b746a1146d2ac595156ae5 https://www.encodeproject.org/files/ENCFF987CLO/@@download/ENCFF987CLO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF568DKF bam alignments ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HVJ, ENCFF807MUK 814338141 ENCODE Processing Pipeline af1d09cb5b15abec4560c9aaebce1ad7 https://www.encodeproject.org/files/ENCFF568DKF/@@download/ENCFF568DKF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF000YYM bam alignments ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YYV 356461519 Kevin Struhl, HMS 301cc708041b6fee15716493045c9573 https://www.encodeproject.org/files/ENCFF000YYM/@@download/ENCFF000YYM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YYN bam alignments ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYW 380143046 Kevin Struhl, HMS 563c84370e36c6055c3001cc55d208cb https://www.encodeproject.org/files/ENCFF000YYN/@@download/ENCFF000YYN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF976BRM bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HSX, ENCFF807MUK 373084468 ENCODE Processing Pipeline 01fb0f621928e3bd76eae2e0950cf553 https://www.encodeproject.org/files/ENCFF976BRM/@@download/ENCFF976BRM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF569PMD bam alignments ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HSW, ENCFF807MUK 505080746 ENCODE Processing Pipeline f66cb7cfe817583d2dca9a718bf9c213 https://www.encodeproject.org/files/ENCFF569PMD/@@download/ENCFF569PMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF825FLR bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QBZ, ENCFF807MUK 481989402 ENCODE Processing Pipeline 7fc703b190f76e02ff8ec58489d4b082 https://www.encodeproject.org/files/ENCFF825FLR/@@download/ENCFF825FLR.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF112YUX bam alignments ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCC, ENCFF807MUK 972562441 ENCODE Processing Pipeline a61a001d48f6961b8e41a159a2bac1a3 https://www.encodeproject.org/files/ENCFF112YUX/@@download/ENCFF112YUX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF000RES bam alignments ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RFF 698271268 Richard Myers, HAIB 98ff06902c6b439e23f0a97383fde914 https://www.encodeproject.org/files/ENCFF000RES/@@download/ENCFF000RES.bam hg19 released biological replicates with identical biosample ENCFF000REV bam alignments ENCSR000BTS ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens ZBTB33-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RFG 1533449466 Richard Myers, HAIB 0f486d07a17ca566242f76f3942ae195 https://www.encodeproject.org/files/ENCFF000REV/@@download/ENCFF000REV.bam hg19 released biological replicates with identical biosample ENCFF356JEO bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NWT, ENCFF807MUK 640952733 ENCODE Processing Pipeline 8e463d84ea86834b6494196537061722 https://www.encodeproject.org/files/ENCFF356JEO/@@download/ENCFF356JEO.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF732SBB bam alignments ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NWV, ENCFF807MUK 760267172 ENCODE Processing Pipeline 5ee214365c432e750a39372692e2a021 https://www.encodeproject.org/files/ENCFF732SBB/@@download/ENCFF732SBB.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF000XBG bam alignments ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XBO 405142098 Michael Snyder, Stanford c5e9b1db9b9fbe52d18824fe4c1469b4 https://www.encodeproject.org/files/ENCFF000XBG/@@download/ENCFF000XBG.bam hg19 released low read length biological replicates with identical biosample ENCFF000XBH bam alignments ENCSR000EDA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XBN 387894767 Michael Snyder, Stanford a6c0d2651f6d1751be48f2cfe61786c3 https://www.encodeproject.org/files/ENCFF000XBH/@@download/ENCFF000XBH.bam hg19 released low read length biological replicates with identical biosample ENCFF479RIQ bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PJT, ENCFF807MUK 193692144 ENCODE Processing Pipeline f79e7898b902fc85693051ab96274ca7 https://www.encodeproject.org/files/ENCFF479RIQ/@@download/ENCFF479RIQ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF802IIV bam alignments ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PJX, ENCFF807MUK 238701190 ENCODE Processing Pipeline de8eaca80772100b5821d78fc450b09f https://www.encodeproject.org/files/ENCFF802IIV/@@download/ENCFF802IIV.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF187TCP bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF171KWD, ENCFF807MUK 352193046 ENCODE Processing Pipeline b80913bbd07c618730fc9c19e8d9c8c7 https://www.encodeproject.org/files/ENCFF187TCP/@@download/ENCFF187TCP.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF488SVK bam alignments ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF807MUK, ENCFF948AGS 355224858 ENCODE Processing Pipeline e0e0d1a9ddeffa58cd501eb855e4dd21 https://www.encodeproject.org/files/ENCFF488SVK/@@download/ENCFF488SVK.bam hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF108WAD bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZVE, ENCFF807MUK 703884003 ENCODE Processing Pipeline 6c6f5561892c9bd9b55f9df323e968ed https://www.encodeproject.org/files/ENCFF108WAD/@@download/ENCFF108WAD.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF387PPQ bam alignments ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZVF, ENCFF807MUK 753412701 ENCODE Processing Pipeline d114d38cbaeae73ecf7882ce06801d91 https://www.encodeproject.org/files/ENCFF387PPQ/@@download/ENCFF387PPQ.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF146RSB bam alignments ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 100 ENCFF732EAG, ENCFF807MUK, ENCFF807YBJ 2945998615 ENCODE Processing Pipeline c666b21d72645d4b9e58720a731e258d https://www.encodeproject.org/files/ENCFF146RSB/@@download/ENCFF146RSB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NQU bam alignments ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NRH 1665810672 Richard Myers, HAIB c2721708dee8fe2c041087ecf01f09a1 https://www.encodeproject.org/files/ENCFF000NQU/@@download/ENCFF000NQU.bam hg19 released biological replicates with identical biosample ENCFF000NQX bam alignments ENCSR000BSX ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NRO 1708686320 Richard Myers, HAIB 6d9931a7a5fe0c71d138da51e921ee8a https://www.encodeproject.org/files/ENCFF000NQX/@@download/ENCFF000NQX.bam hg19 released biological replicates with identical biosample ENCFF000XKH bam alignments ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKS 295671228 Michael Snyder, Stanford 2df89ef03452affbdcfccc630c4709f1 https://www.encodeproject.org/files/ENCFF000XKH/@@download/ENCFF000XKH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKI bam alignments ENCSR000EDE ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKQ 320832116 Michael Snyder, Stanford 6462bb6c0343e80de6afed6ff24c289a https://www.encodeproject.org/files/ENCFF000XKI/@@download/ENCFF000XKI.bam hg19 released low read length biological replicates with identical biosample ENCFF000WMU bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WNA 172755900 Michael Snyder, Stanford a0a1caf86203e19c8acfae27e17a78cd https://www.encodeproject.org/files/ENCFF000WMU/@@download/ENCFF000WMU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WMV bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WNE 159279652 Michael Snyder, Stanford da5dfbb75c223d8f84704e475bf9fb7e https://www.encodeproject.org/files/ENCFF000WMV/@@download/ENCFF000WMV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WMW bam alignments ENCSR000EAY ChIP-seq EFO:0005348 GM18526 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WNF 177977570 Michael Snyder, Stanford d7fa299cef77f4279f0534bf41cedb21 https://www.encodeproject.org/files/ENCFF000WMW/@@download/ENCFF000WMW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF929JOF bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YOR, ENCFF807MUK 283037583 ENCODE Processing Pipeline 32b3baa7de8975e05a049eebeb51bafd https://www.encodeproject.org/files/ENCFF929JOF/@@download/ENCFF929JOF.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF504AWB bam alignments ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YOT, ENCFF807MUK 306291115 ENCODE Processing Pipeline 183bcd094a699e1e5acc01d75506e6d2 https://www.encodeproject.org/files/ENCFF504AWB/@@download/ENCFF504AWB.bam hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000XEN bam alignments ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XFD 873788446 Peggy Farnham, USC c04d23453a5092893ee2b7b0aa22cfbf https://www.encodeproject.org/files/ENCFF000XEN/@@download/ENCFF000XEN.bam hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000XEO bam alignments ENCSR000EVM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFB 343207870 Peggy Farnham, USC c9886b8fdd7ae6ba7169dd0667893460 https://www.encodeproject.org/files/ENCFF000XEO/@@download/ENCFF000XEO.bam hg19 released missing genetic modification characterization, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF691WRY bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPR, ENCFF807MUK 312256754 ENCODE Processing Pipeline b2738e913b4fa6d66dfbf324d0606664 https://www.encodeproject.org/files/ENCFF691WRY/@@download/ENCFF691WRY.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF793SYX bam alignments ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPP, ENCFF807MUK 258911483 ENCODE Processing Pipeline d90f5d0e416d23627b664be522de71ea https://www.encodeproject.org/files/ENCFF793SYX/@@download/ENCFF793SYX.bam hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF320MKV bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000QUH, ENCFF807MUK 119377286 ENCODE Processing Pipeline 1f9fbd6af9cb3d619e6416b6e3477830 https://www.encodeproject.org/files/ENCFF320MKV/@@download/ENCFF320MKV.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF054FYX bam alignments ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000QUL, ENCFF807MUK 119405922 ENCODE Processing Pipeline d8d919ff8b169c557ce9f5f4a319308b https://www.encodeproject.org/files/ENCFF054FYX/@@download/ENCFF054FYX.bam hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF392GEM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1077868323 ENCODE Processing Pipeline 774cad206354fe047d5176c0b0ccec8e https://www.encodeproject.org/files/ENCFF392GEM/@@download/ENCFF392GEM.bam hg19 released moderate library complexity severe bottlenecking ENCFF986BOM bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 50 ENCFF705WBN, ENCFF807MUK 1173275706 ENCODE Processing Pipeline aa0684256da83e7371db3ac8fd227822 https://www.encodeproject.org/files/ENCFF986BOM/@@download/ENCFF986BOM.bam hg19 released moderate library complexity severe bottlenecking ENCFF225PIB bam alignments ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 50 ENCFF049PKJ, ENCFF807MUK 1077868308 ENCODE Processing Pipeline bb6fd225d050e728ea04ed2e28372a81 https://www.encodeproject.org/files/ENCFF225PIB/@@download/ENCFF225PIB.bam hg19 released moderate library complexity severe bottlenecking ENCFF139WTG bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHG, ENCFF807MUK 913451977 ENCODE Processing Pipeline 26918aef90b57a33d8a90c494ac67c06 https://www.encodeproject.org/files/ENCFF139WTG/@@download/ENCFF139WTG.bam hg19 released low read length biological replicates with identical biosample ENCFF218ESX bam alignments ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHI, ENCFF807MUK 1093161462 ENCODE Processing Pipeline a4f1fb09469d85e744aeb32496f081e9 https://www.encodeproject.org/files/ENCFF218ESX/@@download/ENCFF218ESX.bam hg19 released low read length biological replicates with identical biosample ENCFF000PCX bam alignments ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PDL 1373864737 Richard Myers, HAIB 2cd868acf32314c529e721dbf99e785f https://www.encodeproject.org/files/ENCFF000PCX/@@download/ENCFF000PCX.bam hg19 released biological replicates with identical biosample ENCFF000PCY bam alignments ENCSR000BVK ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PDJ 1049314457 Richard Myers, HAIB f2fe4afbc42a8614deb0ab866c48bdf2 https://www.encodeproject.org/files/ENCFF000PCY/@@download/ENCFF000PCY.bam hg19 released biological replicates with identical biosample ENCFF755PSY bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OIJ, ENCFF807MUK 245544973 ENCODE Processing Pipeline b106ab2e8bdf12e0510b26dd7b924932 https://www.encodeproject.org/files/ENCFF755PSY/@@download/ENCFF755PSY.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF903NFJ bam alignments ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OIM, ENCFF807MUK 263189702 ENCODE Processing Pipeline 99cb46c258c8b7cc47c82cab6f82fd73 https://www.encodeproject.org/files/ENCFF903NFJ/@@download/ENCFF903NFJ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF307AYT bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HUF, ENCFF807MUK 772486466 ENCODE Processing Pipeline 009ee90d716a948de825b2b3738cef35 https://www.encodeproject.org/files/ENCFF307AYT/@@download/ENCFF307AYT.bam hg19 released low read length, low read depth ENCFF860VSM bam alignments ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HUG, ENCFF807MUK 794941615 ENCODE Processing Pipeline 5834e143ed1a95136fb7650048e6a5f4 https://www.encodeproject.org/files/ENCFF860VSM/@@download/ENCFF860VSM.bam hg19 released low read length, low read depth ENCFF477SJG bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NKT, ENCFF807MUK 528449795 ENCODE Processing Pipeline 16495cf20d8aa82fc8cfb7f868e3fef3 https://www.encodeproject.org/files/ENCFF477SJG/@@download/ENCFF477SJG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF100KVY bam alignments ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NKZ, ENCFF807MUK 979848155 ENCODE Processing Pipeline eecf8ee46c3c1974e8bb4a9749fe9369 https://www.encodeproject.org/files/ENCFF100KVY/@@download/ENCFF100KVY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF440UUU bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000ZAE, ENCFF807MUK 230804748 ENCODE Processing Pipeline 327fd90faaf2fa1e4ea961736552682b https://www.encodeproject.org/files/ENCFF440UUU/@@download/ENCFF440UUU.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF739PBB bam alignments ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000ZBF, ENCFF807MUK 432250264 ENCODE Processing Pipeline 5b1dd87b60f08b419f06ae044dd34661 https://www.encodeproject.org/files/ENCFF739PBB/@@download/ENCFF739PBB.bam hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF123GAA bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF002EAK, ENCFF807MUK 810676696 ENCODE Processing Pipeline d6d9e99133ed185732aa5ea127f2d43f https://www.encodeproject.org/files/ENCFF123GAA/@@download/ENCFF123GAA.bam hg19 released low read length, borderline replicate concordance ENCFF180AFK bam alignments ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF002EAH, ENCFF807MUK 810340780 ENCODE Processing Pipeline c798f5a663bd415709ec76be1e2fbd1a https://www.encodeproject.org/files/ENCFF180AFK/@@download/ENCFF180AFK.bam hg19 released low read length, borderline replicate concordance ENCFF257TDA bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 76 ENCFF213TBR, ENCFF807MUK 1845614774 ENCODE Processing Pipeline d6b3d24fdec1c49a8290dee554372ae2 https://www.encodeproject.org/files/ENCFF257TDA/@@download/ENCFF257TDA.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF749AGZ bam alignments ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 76 ENCFF493APP, ENCFF807MUK 1684587174 ENCODE Processing Pipeline 0e3e88a36691631833c877b39126beae https://www.encodeproject.org/files/ENCFF749AGZ/@@download/ENCFF749AGZ.bam hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF991CXG bam alignments ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF185SFC, ENCFF768WER, ENCFF807MUK 3307515618 ENCODE Processing Pipeline 1802061a6d8b4d02df3997f052052545 https://www.encodeproject.org/files/ENCFF991CXG/@@download/ENCFF991CXG.bam hg19 released antibody characterized with exemption missing control alignments ENCFF632FAF bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WTH, ENCFF807MUK 803563721 ENCODE Processing Pipeline 31a333fec0174fcc3cf74b7d78d42b93 https://www.encodeproject.org/files/ENCFF632FAF/@@download/ENCFF632FAF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF437UHI bam alignments ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WTF, ENCFF807MUK 862214865 ENCODE Processing Pipeline 8bc2a498587e5c33166ef933c5ab0960 https://www.encodeproject.org/files/ENCFF437UHI/@@download/ENCFF437UHI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF817IUK bam alignments ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF322TJU, ENCFF384MEM, ENCFF807MUK 4931255409 ENCODE Processing Pipeline 57028c99c679258b8b060225c017c9fe https://www.encodeproject.org/files/ENCFF817IUK/@@download/ENCFF817IUK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF978GBP bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 27 ENCFF000YPL, ENCFF807MUK 302528563 ENCODE Processing Pipeline 02752d4c5a8dec46e16c4f18ecab1e33 https://www.encodeproject.org/files/ENCFF978GBP/@@download/ENCFF978GBP.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF994JIB bam alignments ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 27 ENCFF000YPN, ENCFF807MUK 261655045 ENCODE Processing Pipeline 817ca21655b5c7ff92ac16060107d51c https://www.encodeproject.org/files/ENCFF994JIB/@@download/ENCFF994JIB.bam hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF687USK bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQQ, ENCFF807MUK 486550060 ENCODE Processing Pipeline 10281da4c32c6e3735e28af0892f1c97 https://www.encodeproject.org/files/ENCFF687USK/@@download/ENCFF687USK.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF945BSS bam alignments ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OQY, ENCFF807MUK 967927877 ENCODE Processing Pipeline ef80bd1a05a9a95a49b27070fa22f3af https://www.encodeproject.org/files/ENCFF945BSS/@@download/ENCFF945BSS.bam hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF776GGM bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PKK, ENCFF807MUK 535962155 ENCODE Processing Pipeline 9ecdc54b421aae00139956fc8db4e18e https://www.encodeproject.org/files/ENCFF776GGM/@@download/ENCFF776GGM.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF214JZV bam alignments ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PKR, ENCFF807MUK 970685215 ENCODE Processing Pipeline 5f5d4a5167ce38457f6afcc21ac172b1 https://www.encodeproject.org/files/ENCFF214JZV/@@download/ENCFF214JZV.bam hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF288DHW bam alignments ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF427OPF, ENCFF807MUK, ENCFF901YTM 4881304486 ENCODE Processing Pipeline d6febe8bd514f23444cabef1279f0498 https://www.encodeproject.org/files/ENCFF288DHW/@@download/ENCFF288DHW.bam hg19 released antibody characterized with exemption ENCFF000OXU bam alignments ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYD 1380589223 Richard Myers, HAIB 7a394fd2b38ecad5e7c4563d1d8df5ca https://www.encodeproject.org/files/ENCFF000OXU/@@download/ENCFF000OXU.bam hg19 released biological replicates with identical biosample ENCFF000OXX bam alignments ENCSR000BUG ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ATF3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OYI 1903827214 Richard Myers, HAIB 3b009a6aff0cefc12974864418e46a6d https://www.encodeproject.org/files/ENCFF000OXX/@@download/ENCFF000OXX.bam hg19 released biological replicates with identical biosample ENCFF654TGQ bam alignments ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF141YYX, ENCFF807MUK, ENCFF813TWG 3717513371 ENCODE Processing Pipeline 8810850e3c678dbafb0a0c1a69fa39b4 https://www.encodeproject.org/files/ENCFF654TGQ/@@download/ENCFF654TGQ.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF292MAD bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000VPD, ENCFF807MUK 811080112 ENCODE Processing Pipeline 4274a06aedd7b5bf659c831f8b3861e1 https://www.encodeproject.org/files/ENCFF292MAD/@@download/ENCFF292MAD.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF378FXS bam alignments ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000VPF, ENCFF807MUK 821362934 ENCODE Processing Pipeline 8e5531c9c20ab88318d04e8eaeaaefe4 https://www.encodeproject.org/files/ENCFF378FXS/@@download/ENCFF378FXS.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF386SKS bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QIS, ENCFF807MUK 1123456658 ENCODE Processing Pipeline db09a915c690d33899f975c7d3c60aab https://www.encodeproject.org/files/ENCFF386SKS/@@download/ENCFF386SKS.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF455XOX bam alignments ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QIW, ENCFF807MUK 1333424025 ENCODE Processing Pipeline a61a4c12a0e3bcfc903b45f45a6875fe https://www.encodeproject.org/files/ENCFF455XOX/@@download/ENCFF455XOX.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF689FFZ bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000ARU, ENCFF807MUK 494898473 ENCODE Processing Pipeline e1436c87690cfd58d4224e97becd9a41 https://www.encodeproject.org/files/ENCFF689FFZ/@@download/ENCFF689FFZ.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF385WMX bam alignments ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000ASA, ENCFF807MUK 1635702472 ENCODE Processing Pipeline bf85c6c8ff39aff5ba7d2783a50077e7 https://www.encodeproject.org/files/ENCFF385WMX/@@download/ENCFF385WMX.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF899CBZ bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 25 ENCFF000OHN, ENCFF807MUK 252147042 ENCODE Processing Pipeline fcb27e6620808b6aeb3f427af5f8cdda https://www.encodeproject.org/files/ENCFF899CBZ/@@download/ENCFF899CBZ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF281OFW bam alignments ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 25 ENCFF000OHD, ENCFF807MUK 323777819 ENCODE Processing Pipeline cd1c00bd3bccf185c128a98ff22e1979 https://www.encodeproject.org/files/ENCFF281OFW/@@download/ENCFF281OFW.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF983YSM bam alignments ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF071FDH, ENCFF807MUK, ENCFF950IWA 3412522816 ENCODE Processing Pipeline 860524ece3c39808668a3e45c6f1c6c1 https://www.encodeproject.org/files/ENCFF983YSM/@@download/ENCFF983YSM.bam hg19 released antibody characterized with exemption missing control alignments ENCFF703KIU bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000YJJ, ENCFF807MUK 384094779 ENCODE Processing Pipeline 5546b500bf8a0b4c4f3b5d0096f3fca9 https://www.encodeproject.org/files/ENCFF703KIU/@@download/ENCFF703KIU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF738IAS bam alignments ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000YJL, ENCFF807MUK 764612357 ENCODE Processing Pipeline b78153f4ba56ddec01f6e07ea21e5127 https://www.encodeproject.org/files/ENCFF738IAS/@@download/ENCFF738IAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF924BHS bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YEG, ENCFF807MUK 868086153 ENCODE Processing Pipeline 0d43d7455ce839dc37ed3a646924f5f9 https://www.encodeproject.org/files/ENCFF924BHS/@@download/ENCFF924BHS.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279TIW bam alignments ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YEE, ENCFF807MUK 768969297 ENCODE Processing Pipeline 36333f5b7aa89e7f35ab9bd7d9949936 https://www.encodeproject.org/files/ENCFF279TIW/@@download/ENCFF279TIW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEF bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XER 329111657 Michael Snyder, Stanford 1e38de407185ed7e57642e3a2f392aba https://www.encodeproject.org/files/ENCFF000XEF/@@download/ENCFF000XEF.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XEG bam alignments ENCSR000ECZ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XFC 389522374 Michael Snyder, Stanford 71953d24b9975e8037ff8c85b9bad264 https://www.encodeproject.org/files/ENCFF000XEG/@@download/ENCFF000XEG.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000MWW bam alignments ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000MXH 1413267251 Richard Myers, HAIB 8edfc9d56a5fd3b80f79bf6b8c9a1558 https://www.encodeproject.org/files/ENCFF000MWW/@@download/ENCFF000MWW.bam hg19 released biological replicates with identical biosample ENCFF000MWY bam alignments ENCSR000BUB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000MXK 1521618214 Richard Myers, HAIB 12a1364936adaafad3a8adcba9edc487 https://www.encodeproject.org/files/ENCFF000MWY/@@download/ENCFF000MWY.bam hg19 released biological replicates with identical biosample ENCFF000OBJ bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OBU 1348804394 Richard Myers, HAIB b160ac79cbc69e3e2856b58214fcc121 https://www.encodeproject.org/files/ENCFF000OBJ/@@download/ENCFF000OBJ.bam hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF000OBO bam alignments ENCSR000BGQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 3 ENCFF000OBS 1327495223 Richard Myers, HAIB b6ae67932f7c18b76a9a2accd83b3d92 https://www.encodeproject.org/files/ENCFF000OBO/@@download/ENCFF000OBO.bam hg19 released low read length biological replicates with identical biosample, missing raw data in replicate ENCFF197PVC bam alignments ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF023HVW, ENCFF215BBJ, ENCFF807MUK 3081679719 ENCODE Processing Pipeline 5b199ca4e88a66a44b998a0d60bcb7da https://www.encodeproject.org/files/ENCFF197PVC/@@download/ENCFF197PVC.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF852CZT bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HMV, ENCFF807MUK 259723141 ENCODE Processing Pipeline 3abc3941ebc137dadfb7857c52bcf9dc https://www.encodeproject.org/files/ENCFF852CZT/@@download/ENCFF852CZT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF020GGX bam alignments ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HNG, ENCFF807MUK 495397873 ENCODE Processing Pipeline c9af6670aa760cb6118f8a4903c6ec31 https://www.encodeproject.org/files/ENCFF020GGX/@@download/ENCFF020GGX.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF061QYS bam alignments ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF536HLB, ENCFF669LRI, ENCFF807MUK 5110448901 ENCODE Processing Pipeline dfffbf6550f5295ae8603b4c99f19a5a https://www.encodeproject.org/files/ENCFF061QYS/@@download/ENCFF061QYS.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF832GXU bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCI, ENCFF807MUK 478385274 ENCODE Processing Pipeline bb48266adc40f37c754a62d60428be1e https://www.encodeproject.org/files/ENCFF832GXU/@@download/ENCFF832GXU.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF962ELB bam alignments ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCK, ENCFF807MUK 424375381 ENCODE Processing Pipeline c7bc3f2efb23d867d46a8bb7ffac03a8 https://www.encodeproject.org/files/ENCFF962ELB/@@download/ENCFF962ELB.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF305OWM bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OGC, ENCFF807MUK 563659161 ENCODE Processing Pipeline 122c8c7bc37b5e9c41417be5f1c8ec3c https://www.encodeproject.org/files/ENCFF305OWM/@@download/ENCFF305OWM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF388CVC bam alignments ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OGH, ENCFF807MUK 738021623 ENCODE Processing Pipeline 2015c068fc357c88d41fc60b8f26ec7f https://www.encodeproject.org/files/ENCFF388CVC/@@download/ENCFF388CVC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF535PHN bam alignments ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 100 ENCFF026VCA, ENCFF357YNX, ENCFF807MUK 2950454173 ENCODE Processing Pipeline 0ffc3069df55bb72a4756bc686110be9 https://www.encodeproject.org/files/ENCFF535PHN/@@download/ENCFF535PHN.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF032EXY bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYZ, ENCFF807MUK 310972759 ENCODE Processing Pipeline dbd8b6366013c6ed876c980d5246956f https://www.encodeproject.org/files/ENCFF032EXY/@@download/ENCFF032EXY.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF620AHU bam alignments ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYX, ENCFF807MUK 457949625 ENCODE Processing Pipeline 02a2e2bb109ae341f790834e2edafe23 https://www.encodeproject.org/files/ENCFF620AHU/@@download/ENCFF620AHU.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF897ATK bam alignments ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 36 ENCFF311BDI, ENCFF807MUK, ENCFF879QBW 2289713650 ENCODE Processing Pipeline 9d24204d7bc2d06be76a25f17eaabe0a https://www.encodeproject.org/files/ENCFF897ATK/@@download/ENCFF897ATK.bam hg19 released low read length experiment not submitted to GEO ENCFF373FVR bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RFO, ENCFF807MUK 253691770 ENCODE Processing Pipeline bfc55e59ce08850ccab0cbce95671c0a https://www.encodeproject.org/files/ENCFF373FVR/@@download/ENCFF373FVR.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF587REM bam alignments ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RFI, ENCFF807MUK 379617138 ENCODE Processing Pipeline 1e14f4b7569d5f7ff9e8e32a089a588d https://www.encodeproject.org/files/ENCFF587REM/@@download/ENCFF587REM.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000WCJ bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WCO 133370281 Sherman Weissman, Yale b0f751708adbdee8cf0f6a2b44662129 https://www.encodeproject.org/files/ENCFF000WCJ/@@download/ENCFF000WCJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WCK bam alignments ENCSR000EYU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR3G-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WCU 159927609 Sherman Weissman, Yale 891ca9871128c2587420673385518298 https://www.encodeproject.org/files/ENCFF000WCK/@@download/ENCFF000WCK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF374QJL bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QKJ, ENCFF807MUK 166901482 ENCODE Processing Pipeline 641987233cf859928d06dd5e7306e296 https://www.encodeproject.org/files/ENCFF374QJL/@@download/ENCFF374QJL.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF974OCA bam alignments ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QKK, ENCFF807MUK 270634558 ENCODE Processing Pipeline ad27b4d06443569067b685bffac04e51 https://www.encodeproject.org/files/ENCFF974OCA/@@download/ENCFF974OCA.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF748LJL bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OVI, ENCFF807MUK 460879304 ENCODE Processing Pipeline cb6e020d602d4f0060579ee1c8253e1f https://www.encodeproject.org/files/ENCFF748LJL/@@download/ENCFF748LJL.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF905QYS bam alignments ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OVV, ENCFF807MUK 1872124803 ENCODE Processing Pipeline 6eb098fbaddde8393e6ae6522d9fd6c3 https://www.encodeproject.org/files/ENCFF905QYS/@@download/ENCFF905QYS.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF318WJA bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QJP, ENCFF807MUK 156405298 ENCODE Processing Pipeline bd64912922ada53dacb8b96e1fa0c470 https://www.encodeproject.org/files/ENCFF318WJA/@@download/ENCFF318WJA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF528NQV bam alignments ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QJR, ENCFF807MUK 390305962 ENCODE Processing Pipeline bbc71c4b5a16af131fb5d2724205b0a6 https://www.encodeproject.org/files/ENCFF528NQV/@@download/ENCFF528NQV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF693CKU bam alignments ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCG, ENCFF807MUK 1092910807 ENCODE Processing Pipeline c6e5d3cc485062d9a3123ef3cdae999a https://www.encodeproject.org/files/ENCFF693CKU/@@download/ENCFF693CKU.bam hg19 released control low read depth, low read length, inconsistent platforms ENCFF000ZKH bam alignments ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZKJ 578318639 Peggy Farnham, USC 02264c6d0a9868153af4cbfe191dfaaa https://www.encodeproject.org/files/ENCFF000ZKH/@@download/ENCFF000ZKH.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZKO bam alignments ENCSR000EWV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZKL 765280330 Peggy Farnham, USC b86317c688ae58bf962d3e0433fd971c https://www.encodeproject.org/files/ENCFF000ZKO/@@download/ENCFF000ZKO.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XKA bam alignments ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKK 405301355 Michael Snyder, Stanford c5c9bb58c1d11d04a6c6206bf945525f https://www.encodeproject.org/files/ENCFF000XKA/@@download/ENCFF000XKA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKC bam alignments ENCSR000ECY ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens PRDM1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKL 409193393 Michael Snyder, Stanford e243daf8377bdefc8dc18137be37ee3f https://www.encodeproject.org/files/ENCFF000XKC/@@download/ENCFF000XKC.bam hg19 released low read length biological replicates with identical biosample ENCFF000YBE bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YBD 650309115 Michael Snyder, Stanford 9c6fbadcfdfe33de2ea8a3cc61a61051 https://www.encodeproject.org/files/ENCFF000YBE/@@download/ENCFF000YBE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBG bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YBR 781991578 Michael Snyder, Stanford 7cf5acc45836fb838b43f66aa4deee51 https://www.encodeproject.org/files/ENCFF000YBG/@@download/ENCFF000YBG.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YBI bam alignments ENCSR000EFB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YCV 678016430 Michael Snyder, Stanford 38c40a981052419b388e4008c1b3e7cb https://www.encodeproject.org/files/ENCFF000YBI/@@download/ENCFF000YBI.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF217TNK bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WYV, ENCFF807MUK 1787470026 ENCODE Processing Pipeline 6f8f3ac85e058e1ed671b827ce09404d https://www.encodeproject.org/files/ENCFF217TNK/@@download/ENCFF217TNK.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF362FIB bam alignments ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WYW, ENCFF807MUK 1430859578 ENCODE Processing Pipeline b2ef725dc23f8265af127a46d1f11eb4 https://www.encodeproject.org/files/ENCFF362FIB/@@download/ENCFF362FIB.bam hg19 released control low read depth, low read length, borderline replicate concordance ENCFF000PAC bam alignments ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PAP 1537162497 Richard Myers, HAIB f28bcf1f0d2965ef30ca91516b738e63 https://www.encodeproject.org/files/ENCFF000PAC/@@download/ENCFF000PAC.bam hg19 released biological replicates with identical biosample ENCFF000PAF bam alignments ENCSR000BSH ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PAQ 1603604244 Richard Myers, HAIB 73a5c1dc702f8f83b12df530529c8434 https://www.encodeproject.org/files/ENCFF000PAF/@@download/ENCFF000PAF.bam hg19 released biological replicates with identical biosample ENCFF433CEB bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YUE, ENCFF807MUK 1400504974 ENCODE Processing Pipeline 5b4bd00d6595c65618b034f0863a5e1c https://www.encodeproject.org/files/ENCFF433CEB/@@download/ENCFF433CEB.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF560QPO bam alignments ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YUC, ENCFF807MUK 1210494330 ENCODE Processing Pipeline 1b680f4d5493b1603040b79791df29fe https://www.encodeproject.org/files/ENCFF560QPO/@@download/ENCFF560QPO.bam hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF419LUK bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 36 ENCFF794IGW, ENCFF807MUK 929908483 ENCODE Processing Pipeline 9c07dc0a91437bbfb74bbbf79d803f84 https://www.encodeproject.org/files/ENCFF419LUK/@@download/ENCFF419LUK.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF277NVQ bam alignments ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 36 ENCFF079NVQ, ENCFF807MUK 914640863 ENCODE Processing Pipeline 39fd0480c28a53150e9d2e39022c5454 https://www.encodeproject.org/files/ENCFF277NVQ/@@download/ENCFF277NVQ.bam hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF649QHV bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZV, ENCFF807MUK 189978068 ENCODE Processing Pipeline 3a5e6de3bdedba129a7a9623f3a29aad https://www.encodeproject.org/files/ENCFF649QHV/@@download/ENCFF649QHV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF400SJA bam alignments ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZY, ENCFF807MUK 767732324 ENCODE Processing Pipeline 62bd020b3f854ed98a5598c63c1f35a2 https://www.encodeproject.org/files/ENCFF400SJA/@@download/ENCFF400SJA.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF000OEO bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000OEV 869557624 Richard Myers, HAIB c1f6262ecaafe47381bc9b4083ac89ab https://www.encodeproject.org/files/ENCFF000OEO/@@download/ENCFF000OEO.bam hg19 released low read length missing raw data in replicate ENCFF000OEL bam alignments ENCSR000BHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 1 567992634 Richard Myers, HAIB 9b64ec2e8eba8adb613d9502da19908b https://www.encodeproject.org/files/ENCFF000OEL/@@download/ENCFF000OEL.bam hg19 released low read length missing derived_from, missing raw data in replicate ENCFF518OUM bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 100 ENCFF447NYN, ENCFF807MUK, ENCFF865MQU 5854009453 ENCODE Processing Pipeline b18ad9c21bb24cc3035621853f48f599 https://www.encodeproject.org/files/ENCFF518OUM/@@download/ENCFF518OUM.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF393CEV bam alignments ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 100 ENCFF052VWI, ENCFF802MME, ENCFF807MUK 5351520453 ENCODE Processing Pipeline 139a9965d8c4f619e4bd5b1c2bf532d6 https://www.encodeproject.org/files/ENCFF393CEV/@@download/ENCFF393CEV.bam hg19 released mild to moderate bottlenecking NTR biosample ENCFF853WZI bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000VTY, ENCFF807MUK 470957768 ENCODE Processing Pipeline 891780b5a6d225370e6115d69f954feb https://www.encodeproject.org/files/ENCFF853WZI/@@download/ENCFF853WZI.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF106HCF bam alignments ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000VTW, ENCFF807MUK 604408291 ENCODE Processing Pipeline 63a9cc756e4f3fad7a0baa11f1683627 https://www.encodeproject.org/files/ENCFF106HCF/@@download/ENCFF106HCF.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000CBO bam alignments ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF001QXC 1267294707 Bradley Bernstein, Broad bfc4664b64b4577b6e9c3a72b28c6582 https://www.encodeproject.org/files/ENCFF000CBO/@@download/ENCFF000CBO.bam hg19 released low read length, inconsistent platforms, mixed read lengths ENCFF272WPB bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000BKY, ENCFF807MUK 873869200 ENCODE Processing Pipeline 73f28184643db12dc349ab0a1e1bdfe2 https://www.encodeproject.org/files/ENCFF272WPB/@@download/ENCFF272WPB.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF543GAK bam alignments ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000BKZ, ENCFF807MUK 1353584863 ENCODE Processing Pipeline b5aa7b276813f48ca6aa5fed8423d477 https://www.encodeproject.org/files/ENCFF543GAK/@@download/ENCFF543GAK.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF839TMC bam alignments ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF073GTF, ENCFF554PAM, ENCFF807MUK 4969801652 ENCODE Processing Pipeline 3dbddef3ac5dd9738cc9513e1393d7dc https://www.encodeproject.org/files/ENCFF839TMC/@@download/ENCFF839TMC.bam hg19 released control low read depth, antibody characterized with exemption ENCFF597SZP bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000WHB, ENCFF807MUK 630010080 ENCODE Processing Pipeline e00333442fa1995a6921b6cc55bd6e1a https://www.encodeproject.org/files/ENCFF597SZP/@@download/ENCFF597SZP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF463YMY bam alignments ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000WGZ, ENCFF807MUK 650088239 ENCODE Processing Pipeline a4766d4bbb9adf84e03c6c23ceafbaea https://www.encodeproject.org/files/ENCFF463YMY/@@download/ENCFF463YMY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000YIG bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YHZ 194498098 Sherman Weissman, Yale 011d7d44c028f404425b00568fa7769f https://www.encodeproject.org/files/ENCFF000YIG/@@download/ENCFF000YIG.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000YIH bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YIB 216573649 Sherman Weissman, Yale cf7599a39040c55b933a5e5381693a4a https://www.encodeproject.org/files/ENCFF000YIH/@@download/ENCFF000YIH.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF000YII bam alignments ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000YIA 216606543 Sherman Weissman, Yale b104cbcedb5c6bcad77e98600467e557 https://www.encodeproject.org/files/ENCFF000YII/@@download/ENCFF000YII.bam hg19 released duplicate lane review, biological replicates with identical biosample insufficient read length ENCFF854STG bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF622UBZ, ENCFF807MUK 356988954 ENCODE Processing Pipeline 8f5069979693a725162d77d3e1f6efdb https://www.encodeproject.org/files/ENCFF854STG/@@download/ENCFF854STG.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF258PMU bam alignments ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF270OEH, ENCFF807MUK 299884843 ENCODE Processing Pipeline 6f75df45c5a1d8bf9a72e839c5bc56d6 https://www.encodeproject.org/files/ENCFF258PMU/@@download/ENCFF258PMU.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF000YXW bam alignments ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YYL 465852176 Sherman Weissman, Yale 94c1159522885c017235571890cc342c https://www.encodeproject.org/files/ENCFF000YXW/@@download/ENCFF000YXW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YXX bam alignments ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YYR 450889301 Sherman Weissman, Yale 7f5c811793a97f48564b77337c815993 https://www.encodeproject.org/files/ENCFF000YXX/@@download/ENCFF000YXX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF132LHA bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QIU, ENCFF807MUK 407089372 ENCODE Processing Pipeline 1a0406a7db438f101e1012ad4bd69815 https://www.encodeproject.org/files/ENCFF132LHA/@@download/ENCFF132LHA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF670GGQ bam alignments ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIY, ENCFF807MUK 415811046 ENCODE Processing Pipeline 528466f7af58f8195203a0ed53c841a2 https://www.encodeproject.org/files/ENCFF670GGQ/@@download/ENCFF670GGQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000RME bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF000RMM 1292714836 Vishwanath Iyer, UTA b9b9a57bea8c1a5e1ab05b3411c7d23e https://www.encodeproject.org/files/ENCFF000RME/@@download/ENCFF000RME.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RMG bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF000RMO 1090134829 Vishwanath Iyer, UTA ca0b631be1d04e6cdde0f2e4e1920199 https://www.encodeproject.org/files/ENCFF000RMG/@@download/ENCFF000RMG.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF453VMB bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RMO, ENCFF807MUK 821705699 ENCODE Processing Pipeline 6056aa746760dc9057c608c517d630c2 https://www.encodeproject.org/files/ENCFF453VMB/@@download/ENCFF453VMB.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF555WWS bam alignments ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RMM, ENCFF807MUK 992852317 ENCODE Processing Pipeline 5fbd286ffbacf2f85968ca873bf2a615 https://www.encodeproject.org/files/ENCFF555WWS/@@download/ENCFF555WWS.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000XVW bam alignments ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XWG 193855657 Michael Snyder, Stanford f7bea87ee046e807eab9416efc94cb40 https://www.encodeproject.org/files/ENCFF000XVW/@@download/ENCFF000XVW.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XVX bam alignments ENCSR000EEQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour PPARGC1A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XVQ 328062335 Michael Snyder, Stanford 469c2a9f54856d92688add3d6fe6db18 https://www.encodeproject.org/files/ENCFF000XVX/@@download/ENCFF000XVX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF108NWA bam alignments ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF278HOZ, ENCFF807MUK, ENCFF818QPF 2485298893 ENCODE Processing Pipeline 9712d8972e3b5c7acdd668b04c927ff1 https://www.encodeproject.org/files/ENCFF108NWA/@@download/ENCFF108NWA.bam hg19 released antibody characterized with exemption missing control alignments ENCFF262AKB bam alignments ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF550BKX, ENCFF635PVD, ENCFF807MUK 3946784302 ENCODE Processing Pipeline 443573e8fd0e32e55bd24a466f3560b5 https://www.encodeproject.org/files/ENCFF262AKB/@@download/ENCFF262AKB.bam hg19 released antibody characterized with exemption ENCFF370KVW bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RQS, ENCFF807MUK 891494413 ENCODE Processing Pipeline 11db35d1aab11cb4a942e70a108a02c5 https://www.encodeproject.org/files/ENCFF370KVW/@@download/ENCFF370KVW.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF075LLZ bam alignments ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RQN, ENCFF807MUK 463070579 ENCODE Processing Pipeline 636b06304fca89097aaced94166f4d02 https://www.encodeproject.org/files/ENCFF075LLZ/@@download/ENCFF075LLZ.bam hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF482NNF bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QJH, ENCFF807MUK 395595102 ENCODE Processing Pipeline e151b5c765218c06df0a9d4c8f0fe716 https://www.encodeproject.org/files/ENCFF482NNF/@@download/ENCFF482NNF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF275STF bam alignments ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QJK, ENCFF807MUK 1143339499 ENCODE Processing Pipeline b1e4b57b59b9fc230d9c59e49b4790a5 https://www.encodeproject.org/files/ENCFF275STF/@@download/ENCFF275STF.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF530XPP bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CJH, ENCFF807MUK 486585943 ENCODE Processing Pipeline ad8ab6f05b365f10795c6215b89f9fbe https://www.encodeproject.org/files/ENCFF530XPP/@@download/ENCFF530XPP.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF893UBS bam alignments ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CJJ, ENCFF807MUK 478614081 ENCODE Processing Pipeline 6307732b18b681e8838cd85ad07cb7d1 https://www.encodeproject.org/files/ENCFF893UBS/@@download/ENCFF893UBS.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF436XSF bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZQL, ENCFF807MUK 555537977 ENCODE Processing Pipeline 45715f7223f4c954bab5da2e4b5aa9b5 https://www.encodeproject.org/files/ENCFF436XSF/@@download/ENCFF436XSF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF898GKX bam alignments ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZQI, ENCFF807MUK 683365141 ENCODE Processing Pipeline ff3c59cd24d57b83b393194cc574313e https://www.encodeproject.org/files/ENCFF898GKX/@@download/ENCFF898GKX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF152ZGE bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OJL, ENCFF807MUK 639718867 ENCODE Processing Pipeline 473c6f6d489b0d8ea4fcd0f2519ed30c https://www.encodeproject.org/files/ENCFF152ZGE/@@download/ENCFF152ZGE.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF450BQJ bam alignments ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OJM, ENCFF807MUK 792519970 ENCODE Processing Pipeline 517e2df4d90a1d19081ea1409724d33e https://www.encodeproject.org/files/ENCFF450BQJ/@@download/ENCFF450BQJ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF547MVS bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000PMU, ENCFF807MUK 875389378 ENCODE Processing Pipeline 1802be265a2b056999cb7e0aabb57e68 https://www.encodeproject.org/files/ENCFF547MVS/@@download/ENCFF547MVS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF966SKB bam alignments ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000PMV, ENCFF807MUK 796409962 ENCODE Processing Pipeline bd19d90f8c1122a3fac4e6df5bb6c4a6 https://www.encodeproject.org/files/ENCFF966SKB/@@download/ENCFF966SKB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000ZLI bam alignments ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLK 514245960 Peggy Farnham, USC c07c62deb7aa2557f64f712ce5726626 https://www.encodeproject.org/files/ENCFF000ZLI/@@download/ENCFF000ZLI.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000ZLP bam alignments ENCSR000EWT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLM 578272912 Peggy Farnham, USC 2f286f4746ad0f0587df09e3d3a857bb https://www.encodeproject.org/files/ENCFF000ZLP/@@download/ENCFF000ZLP.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF264XSG bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF002ELP, ENCFF002ELQ, ENCFF807MUK 3930040706 ENCODE Processing Pipeline 2a7e1e0d8c16917c0d7ace3adb192caa https://www.encodeproject.org/files/ENCFF264XSG/@@download/ENCFF264XSG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF204KUW bam alignments ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002ELI, ENCFF002ELR, ENCFF236RPE, ENCFF723QGN, ENCFF807MUK 4943493491 ENCODE Processing Pipeline 832b5466373efd5d3c72ecdc1260a7ce https://www.encodeproject.org/files/ENCFF204KUW/@@download/ENCFF204KUW.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF335FQW bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QII, ENCFF807MUK 545875538 ENCODE Processing Pipeline 55dc39b0bbcbe3470fd74f804c0d4ebf https://www.encodeproject.org/files/ENCFF335FQW/@@download/ENCFF335FQW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF085YNW bam alignments ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QIM, ENCFF807MUK 630052343 ENCODE Processing Pipeline f06dd42b3dc1e5eaf00ca6d758a40b06 https://www.encodeproject.org/files/ENCFF085YNW/@@download/ENCFF085YNW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF788FFM bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 36 ENCFF000ZUS, ENCFF807MUK 889972035 ENCODE Processing Pipeline 4b1afb41f7633c8f3e5d0d01d25e4e4b https://www.encodeproject.org/files/ENCFF788FFM/@@download/ENCFF788FFM.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF721IXJ bam alignments ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 36 ENCFF000ZUL, ENCFF807MUK 669142178 ENCODE Processing Pipeline fa0184847e3a6b044d518a2d9c626f92 https://www.encodeproject.org/files/ENCFF721IXJ/@@download/ENCFF721IXJ.bam hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF888NSJ bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CJC, ENCFF807MUK 351373762 ENCODE Processing Pipeline 55db3e313b82e285fc0543e088651460 https://www.encodeproject.org/files/ENCFF888NSJ/@@download/ENCFF888NSJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF562WQJ bam alignments ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CJD, ENCFF807MUK 709209896 ENCODE Processing Pipeline 24c74e3e037aa0c3c6ee9b23bacbe886 https://www.encodeproject.org/files/ENCFF562WQJ/@@download/ENCFF562WQJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF081LSC bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000BBD, ENCFF807MUK 894265281 ENCODE Processing Pipeline ae08a4197571f1228cb72c34c27da534 https://www.encodeproject.org/files/ENCFF081LSC/@@download/ENCFF081LSC.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF162NDI bam alignments ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BBE, ENCFF807MUK 1259338272 ENCODE Processing Pipeline bbf71b5300d82fdd78bd073642008772 https://www.encodeproject.org/files/ENCFF162NDI/@@download/ENCFF162NDI.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF822HFC bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDY, ENCFF807MUK 745061537 ENCODE Processing Pipeline d45e7222baf1f131500d9e5a6de53106 https://www.encodeproject.org/files/ENCFF822HFC/@@download/ENCFF822HFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF359UUS bam alignments ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDX, ENCFF807MUK 907749891 ENCODE Processing Pipeline fcb194ca075724383b600743d6f360da https://www.encodeproject.org/files/ENCFF359UUS/@@download/ENCFF359UUS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QZR bam alignments ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RAE 1465403900 Richard Myers, HAIB b52b2a21d4abed41cd6b99f3380ef99c https://www.encodeproject.org/files/ENCFF000QZR/@@download/ENCFF000QZR.bam hg19 released biological replicates with identical biosample ENCFF000QZU bam alignments ENCSR000BSV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens NFIC-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RAK 2125762946 Richard Myers, HAIB 7454d1b1728d4d13b653bd254bfe064b https://www.encodeproject.org/files/ENCFF000QZU/@@download/ENCFF000QZU.bam hg19 released biological replicates with identical biosample ENCFF000QXM bam alignments ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYA 1800900486 Richard Myers, HAIB 7b8463d510c1f331ae3fdfb314b8fbe9 https://www.encodeproject.org/files/ENCFF000QXM/@@download/ENCFF000QXM.bam hg19 released biological replicates with identical biosample ENCFF000QXQ bam alignments ENCSR000BVB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOSL2-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYD 1504764040 Richard Myers, HAIB 10d3853074e18fcb666ea9253ed20708 https://www.encodeproject.org/files/ENCFF000QXQ/@@download/ENCFF000QXQ.bam hg19 released biological replicates with identical biosample ENCFF000XJH bam alignments ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XJM 331809904 Michael Snyder, Stanford fe87964b906062bdc15ac5e59836e381 https://www.encodeproject.org/files/ENCFF000XJH/@@download/ENCFF000XJH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJJ bam alignments ENCSR000ECV ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XJN 309168720 Michael Snyder, Stanford 6bcfacf1376dcdafb643bf5654e81e49 https://www.encodeproject.org/files/ENCFF000XJJ/@@download/ENCFF000XJJ.bam hg19 released low read length biological replicates with identical biosample ENCFF446IZO bam alignments ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF703TVC, ENCFF807MUK, ENCFF826QIL 7765627931 ENCODE Processing Pipeline 9ceb0ea4ad6df2f2fdb0189256020750 https://www.encodeproject.org/files/ENCFF446IZO/@@download/ENCFF446IZO.bam hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF325HRK bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZQF, ENCFF807MUK 685655117 ENCODE Processing Pipeline 9c1d3015ff4a8af4ac6c699e4f1954e2 https://www.encodeproject.org/files/ENCFF325HRK/@@download/ENCFF325HRK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF826FNF bam alignments ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZQX, ENCFF807MUK 791982955 ENCODE Processing Pipeline 55b0b3a46cae54c2ea20aca97b77428e https://www.encodeproject.org/files/ENCFF826FNF/@@download/ENCFF826FNF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF690UOA bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF720HOL, ENCFF807MUK 995382331 ENCODE Processing Pipeline 97d0c2d6417c95c2c0f9ee67e9b1730a https://www.encodeproject.org/files/ENCFF690UOA/@@download/ENCFF690UOA.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF419GSQ bam alignments ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF279SFM, ENCFF807MUK 476927114 ENCODE Processing Pipeline a91aafb3e343409593e2efbcf68dae46 https://www.encodeproject.org/files/ENCFF419GSQ/@@download/ENCFF419GSQ.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF352UMD bam alignments ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000MXT, ENCFF807MUK 526253787 ENCODE Processing Pipeline 99acbfd982e5d85fb7b005bd61cb01f7 https://www.encodeproject.org/files/ENCFF352UMD/@@download/ENCFF352UMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF000XLA bam alignments ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XLS 568492722 Michael Snyder, Stanford 2ecf0816f4f23d390c4021472384b755 https://www.encodeproject.org/files/ENCFF000XLA/@@download/ENCFF000XLA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLC bam alignments ENCSR000ECS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XLT 682515526 Michael Snyder, Stanford 25c988404f9e52443bfdde061d99700a https://www.encodeproject.org/files/ENCFF000XLC/@@download/ENCFF000XLC.bam hg19 released low read length biological replicates with identical biosample ENCFF096SRY bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF524BES, ENCFF807MUK 774003388 ENCODE Processing Pipeline 3b2331712584edfbce6d3bb2f692eae3 https://www.encodeproject.org/files/ENCFF096SRY/@@download/ENCFF096SRY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF461HDT bam alignments ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AYV, ENCFF807MUK 735165275 ENCODE Processing Pipeline 06c20ecbdca43fe17c0ace49acedd0cd https://www.encodeproject.org/files/ENCFF461HDT/@@download/ENCFF461HDT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000ZMH bam alignments ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZMN 537984244 Michael Snyder, Stanford a992e2644736b60eb2b2f8e967ddb6a0 https://www.encodeproject.org/files/ENCFF000ZMH/@@download/ENCFF000ZMH.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZMJ bam alignments ENCSR000EHS ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZMP 528035667 Michael Snyder, Stanford 9ef19f96192aa79dda36479be86cd947 https://www.encodeproject.org/files/ENCFF000ZMJ/@@download/ENCFF000ZMJ.bam hg19 released low read length biological replicates with identical biosample ENCFF000OPO bam alignments ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OQI 1401846243 Richard Myers, HAIB c8b6662444d09abca1e3d4a2f659db58 https://www.encodeproject.org/files/ENCFF000OPO/@@download/ENCFF000OPO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000OPR bam alignments ENCSR000BSJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OQD 1621150445 Richard Myers, HAIB 144eadde731fca217b161307525216f0 https://www.encodeproject.org/files/ENCFF000OPR/@@download/ENCFF000OPR.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF639ACF bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ONR, ENCFF807MUK 547656106 ENCODE Processing Pipeline eb541133581614e5d103e32aff6ed2d0 https://www.encodeproject.org/files/ENCFF639ACF/@@download/ENCFF639ACF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF483RYF bam alignments ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OOF, ENCFF807MUK 1953877467 ENCODE Processing Pipeline 8c2b9a06de05ece87b81c1adbb42bf23 https://www.encodeproject.org/files/ENCFF483RYF/@@download/ENCFF483RYF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF000NEJ bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NEQ 640372418 Richard Myers, HAIB d42317c957853b2c47b7c693ee2b5677 https://www.encodeproject.org/files/ENCFF000NEJ/@@download/ENCFF000NEJ.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NEM bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NEV 894863278 Richard Myers, HAIB d7ca515255bb2ce76485af91be30672f https://www.encodeproject.org/files/ENCFF000NEM/@@download/ENCFF000NEM.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF408LVE bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NEV, ENCFF807MUK 508391394 ENCODE Processing Pipeline 90db11161162e27124733e72052c7dbf https://www.encodeproject.org/files/ENCFF408LVE/@@download/ENCFF408LVE.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF880YCS bam alignments ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEQ, ENCFF807MUK 249582892 ENCODE Processing Pipeline b923c59acf9740cb9d27bc2e42b4f379 https://www.encodeproject.org/files/ENCFF880YCS/@@download/ENCFF880YCS.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF000NER bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NEZ 605979558 Richard Myers, HAIB c2d6e0ea21dabe7402a435823c6bcd34 https://www.encodeproject.org/files/ENCFF000NER/@@download/ENCFF000NER.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000NEU bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NFG 673542030 Richard Myers, HAIB cc1f0c8bccac1b1403b14f5f0e8cc09e https://www.encodeproject.org/files/ENCFF000NEU/@@download/ENCFF000NEU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF239AAI bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NEZ, ENCFF807MUK 243765517 ENCODE Processing Pipeline d7b9db9a2316c7ba15fb6b75c33c692e https://www.encodeproject.org/files/ENCFF239AAI/@@download/ENCFF239AAI.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF819TOT bam alignments ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NFG, ENCFF807MUK 359382877 ENCODE Processing Pipeline 039e117d906c5c019298c1eff28a766f https://www.encodeproject.org/files/ENCFF819TOT/@@download/ENCFF819TOT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF348ECW bam alignments ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 76 ENCFF096TTP, ENCFF388XOP, ENCFF562AGE, ENCFF689PWV, ENCFF807MUK 1296955723 ENCODE Processing Pipeline 119925b2eef6524c4d634802919f0d8e https://www.encodeproject.org/files/ENCFF348ECW/@@download/ENCFF348ECW.bam hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF052PXH bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PZK, ENCFF807MUK 477952202 ENCODE Processing Pipeline 2ae770e1ee340a8c935a9aa2a8398147 https://www.encodeproject.org/files/ENCFF052PXH/@@download/ENCFF052PXH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF481PJT bam alignments ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PZP, ENCFF807MUK 1052098571 ENCODE Processing Pipeline 03de0b75e84ed721c6cb565bf3289f7d https://www.encodeproject.org/files/ENCFF481PJT/@@download/ENCFF481PJT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000QZI bam alignments ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QZY 1582011329 Richard Myers, HAIB 9d9d2c6d96e9324a2636842b5c4da2e1 https://www.encodeproject.org/files/ENCFF000QZI/@@download/ENCFF000QZI.bam hg19 released biological replicates with identical biosample ENCFF000QZJ bam alignments ENCSR000BVC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MEF2A-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZV 888478364 Richard Myers, HAIB d838fb9066af413414be46ceffcfc01b https://www.encodeproject.org/files/ENCFF000QZJ/@@download/ENCFF000QZJ.bam hg19 released biological replicates with identical biosample ENCFF000ZKZ bam alignments ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLD 1240953470 Peggy Farnham, USC fca4c4735f6c5a5a2e407f0438d565ab https://www.encodeproject.org/files/ENCFF000ZKZ/@@download/ENCFF000ZKZ.bam hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF000ZLC bam alignments ENCSR000EWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HA-E2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLV 1190458053 Peggy Farnham, USC d916c5e89bf7810c0707256f7fe59564 https://www.encodeproject.org/files/ENCFF000ZLC/@@download/ENCFF000ZLC.bam hg19 released missing genetic modification characterization biological replicates with identical biosample insufficient read length ENCFF650DWC bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000VQW, ENCFF807MUK 509677577 ENCODE Processing Pipeline 05c5bd9b7a3f4354ace5536ecaf35d1d https://www.encodeproject.org/files/ENCFF650DWC/@@download/ENCFF650DWC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF477UBE bam alignments ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000VQY, ENCFF807MUK 761795317 ENCODE Processing Pipeline a630ada2eab06510ddd3b453f5a80fb8 https://www.encodeproject.org/files/ENCFF477UBE/@@download/ENCFF477UBE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000ROE bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROK 465349895 Vishwanath Iyer, UTA 8ce078f811af718f44a34c2146a3858f https://www.encodeproject.org/files/ENCFF000ROE/@@download/ENCFF000ROE.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROF bam alignments ENCSR000DKU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROS 522944565 Vishwanath Iyer, UTA 7b15fc2ea3fddb719626d68569432a22 https://www.encodeproject.org/files/ENCFF000ROF/@@download/ENCFF000ROF.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF233ITE bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CVG, ENCFF807MUK 147263998 ENCODE Processing Pipeline 17b1aa655cd74043262ef67b08201720 https://www.encodeproject.org/files/ENCFF233ITE/@@download/ENCFF233ITE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF457SKJ bam alignments ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CVF, ENCFF807MUK 706775536 ENCODE Processing Pipeline 6492b3e6a397e25de886dec19ff5a1f7 https://www.encodeproject.org/files/ENCFF457SKJ/@@download/ENCFF457SKJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF845EFA bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF000CBB, ENCFF461XDG, ENCFF807MUK 1142886140 ENCODE Processing Pipeline bebaad9428d5b407470a74d4701b2282 https://www.encodeproject.org/files/ENCFF845EFA/@@download/ENCFF845EFA.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF121RMK bam alignments ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 3 36 ENCFF609HJW, ENCFF807MUK 1108864530 ENCODE Processing Pipeline a03b8419f659703157f27b73d3166d37 https://www.encodeproject.org/files/ENCFF121RMK/@@download/ENCFF121RMK.bam hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF896LIL bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 51 ENCFF000RYN, ENCFF807MUK 239414329 ENCODE Processing Pipeline 4ce1a2c73ae420a23893f5955447296a https://www.encodeproject.org/files/ENCFF896LIL/@@download/ENCFF896LIL.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF635ZTX bam alignments ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 51 ENCFF000RYL, ENCFF807MUK 170973751 ENCODE Processing Pipeline 1c524837e4d0fc32848f8cdc3efae924 https://www.encodeproject.org/files/ENCFF635ZTX/@@download/ENCFF635ZTX.bam hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF823CUE bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000SAY, ENCFF807MUK 1029493281 ENCODE Processing Pipeline 508d6b5aaf2f10053b8b7ccfd6b15948 https://www.encodeproject.org/files/ENCFF823CUE/@@download/ENCFF823CUE.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF550HPW bam alignments ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000SAX, ENCFF807MUK 962647237 ENCODE Processing Pipeline 617349296f36a6aa5d4dc829015de924 https://www.encodeproject.org/files/ENCFF550HPW/@@download/ENCFF550HPW.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF847NEY bam alignments ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF031QUD, ENCFF794JCH, ENCFF807MUK 7669043910 ENCODE Processing Pipeline 805d7dc5af36a57724182698770cf3d3 https://www.encodeproject.org/files/ENCFF847NEY/@@download/ENCFF847NEY.bam hg19 released antibody characterized with exemption ENCFF124PFW bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZT, ENCFF807MUK 582368755 ENCODE Processing Pipeline 50e459236834d4693fea5cb5f5da0b8e https://www.encodeproject.org/files/ENCFF124PFW/@@download/ENCFF124PFW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF204EXB bam alignments ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZV, ENCFF807MUK 662486371 ENCODE Processing Pipeline 21d9b4fc3caa0fd74f2588ddf8a8d675 https://www.encodeproject.org/files/ENCFF204EXB/@@download/ENCFF204EXB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF000YTL bam alignments ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000YTY 272408741 Sherman Weissman, Yale 84b2551b5afc83e52c79f10906bbb48a https://www.encodeproject.org/files/ENCFF000YTL/@@download/ENCFF000YTL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000YTM bam alignments ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000YTX 199666019 Sherman Weissman, Yale 09167fd890f54da236675706d565c07d https://www.encodeproject.org/files/ENCFF000YTM/@@download/ENCFF000YTM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RNE bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RNQ 552880152 Vishwanath Iyer, UTA 7911b09080f688105056bf22c0dcf1b3 https://www.encodeproject.org/files/ENCFF000RNE/@@download/ENCFF000RNE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000RNG bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RNL 761468572 Vishwanath Iyer, UTA e2f98f53ef44d375a9a5fd4c5e6e9512 https://www.encodeproject.org/files/ENCFF000RNG/@@download/ENCFF000RNG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF235WMM bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RNQ, ENCFF807MUK 413515154 ENCODE Processing Pipeline 04e46e8a4c55a0b6f63a56e590d63f76 https://www.encodeproject.org/files/ENCFF235WMM/@@download/ENCFF235WMM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF481BDP bam alignments ENCSR000DKM ChIP-seq EFO:0002782 H54 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RNL, ENCFF807MUK 574026775 ENCODE Processing Pipeline bdd49461a4bd292844e83fae0b9a25c5 https://www.encodeproject.org/files/ENCFF481BDP/@@download/ENCFF481BDP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF000XIS bam alignments ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XIV 346477077 Kevin Struhl, HMS 6877d45bbe6d4f6f6db8b9fce37d01b6 https://www.encodeproject.org/files/ENCFF000XIS/@@download/ENCFF000XIS.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIT bam alignments ENCSR000DNR ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIX 315518323 Kevin Struhl, HMS 3713fc38e685b7f53bb32a79b266bf0c https://www.encodeproject.org/files/ENCFF000XIT/@@download/ENCFF000XIT.bam hg19 released low read length biological replicates with identical biosample ENCFF922TWG bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBL, ENCFF807MUK 732453557 ENCODE Processing Pipeline c29b96ee832b6a6c36f9e0796912dcd7 https://www.encodeproject.org/files/ENCFF922TWG/@@download/ENCFF922TWG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF067NBD bam alignments ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBR, ENCFF807MUK 546286710 ENCODE Processing Pipeline 841dcb653a31e7b29f39746e3cfafc54 https://www.encodeproject.org/files/ENCFF067NBD/@@download/ENCFF067NBD.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000OXI bam alignments ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OXO 1153127370 Richard Myers, HAIB 3907880258758f75fb46541a637d4526 https://www.encodeproject.org/files/ENCFF000OXI/@@download/ENCFF000OXI.bam hg19 released biological replicates with identical biosample ENCFF000OXL bam alignments ENCSR000BTX ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens TAF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OXT 1670430478 Richard Myers, HAIB 4a67ed8ecbde1e87633883830852132d https://www.encodeproject.org/files/ENCFF000OXL/@@download/ENCFF000OXL.bam hg19 released biological replicates with identical biosample ENCFF000XNK bam alignments ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XNN 456908124 Michael Snyder, Stanford 29409cf082fd577a85913da0142f7538 https://www.encodeproject.org/files/ENCFF000XNK/@@download/ENCFF000XNK.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNL bam alignments ENCSR000ECJ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZKSCAN1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XNP 475222486 Michael Snyder, Stanford 7a590cd79d7994a453525c9977da6dd3 https://www.encodeproject.org/files/ENCFF000XNL/@@download/ENCFF000XNL.bam hg19 released low read length biological replicates with identical biosample ENCFF000WJA bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WJP 344415291 Michael Snyder, Stanford 6b7cb92f997238922069af6bb17c2e16 https://www.encodeproject.org/files/ENCFF000WJA/@@download/ENCFF000WJA.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJD bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WJM 255146681 Michael Snyder, Stanford 20c398ae669b534792975376121209b8 https://www.encodeproject.org/files/ENCFF000WJD/@@download/ENCFF000WJD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WJF bam alignments ENCSR000EAN ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens tumor necrosis factor 25 ng/mL 6 hour RELA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WJN 453656200 Michael Snyder, Stanford 0ff762dd81250312bddecbff8df95b07 https://www.encodeproject.org/files/ENCFF000WJF/@@download/ENCFF000WJF.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF422ZRF bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QCR, ENCFF807MUK 737872380 ENCODE Processing Pipeline 864f6fa952e84bc89517f6648ea6ab8b https://www.encodeproject.org/files/ENCFF422ZRF/@@download/ENCFF422ZRF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF717CDL bam alignments ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QCS, ENCFF807MUK 1345242329 ENCODE Processing Pipeline fc223de23bd51ac63b15c759a3046544 https://www.encodeproject.org/files/ENCFF717CDL/@@download/ENCFF717CDL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF832EGX bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000ZSU, ENCFF807MUK 676003422 ENCODE Processing Pipeline 0802802d52b3d7ddd0dffa5bc8e69e09 https://www.encodeproject.org/files/ENCFF832EGX/@@download/ENCFF832EGX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF708VHO bam alignments ENCSR000EHW ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SMC3-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000ZSS, ENCFF807MUK 741299011 ENCODE Processing Pipeline 420456a209e8fede66d0cf7c62757e53 https://www.encodeproject.org/files/ENCFF708VHO/@@download/ENCFF708VHO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF778CXN bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HJX, ENCFF807MUK 634741633 ENCODE Processing Pipeline ca314c0d650fb0d79444b13c2dfdf103 https://www.encodeproject.org/files/ENCFF778CXN/@@download/ENCFF778CXN.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF217JIP bam alignments ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HJW, ENCFF807MUK 516681020 ENCODE Processing Pipeline 647d1813572a6d99c6b67c242e324ced https://www.encodeproject.org/files/ENCFF217JIP/@@download/ENCFF217JIP.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF160TSK bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000YSQ, ENCFF807MUK 855991866 ENCODE Processing Pipeline 076efcf2edec117fef55d38bf1dd281b https://www.encodeproject.org/files/ENCFF160TSK/@@download/ENCFF160TSK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF749SYJ bam alignments ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000YSS, ENCFF807MUK 804552577 ENCODE Processing Pipeline 75d0fb4b9db8faf5ba10ba2d0b5f230a https://www.encodeproject.org/files/ENCFF749SYJ/@@download/ENCFF749SYJ.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF329NOM bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HWU, ENCFF807MUK 588702367 ENCODE Processing Pipeline 2e74c6e29e4f0da542c2d34f5b3e62ad https://www.encodeproject.org/files/ENCFF329NOM/@@download/ENCFF329NOM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF296JDR bam alignments ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HWL, ENCFF807MUK 664074693 ENCODE Processing Pipeline ed9e82daf35000d003c41a03fc28630c https://www.encodeproject.org/files/ENCFF296JDR/@@download/ENCFF296JDR.bam hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF667KAV bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 36 ENCFF000RZC, ENCFF807MUK 844853431 ENCODE Processing Pipeline 04a28e8d6644358dae5688d93f00827c https://www.encodeproject.org/files/ENCFF667KAV/@@download/ENCFF667KAV.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF503BOT bam alignments ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 36 ENCFF000RZE, ENCFF807MUK 523533883 ENCODE Processing Pipeline 2b7a8c408e6d349a83cfa6c132410e25 https://www.encodeproject.org/files/ENCFF503BOT/@@download/ENCFF503BOT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF361FUX bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000WUT, ENCFF807MUK 666941143 ENCODE Processing Pipeline 157ad664d5f0fb2745cc42c9e88873a2 https://www.encodeproject.org/files/ENCFF361FUX/@@download/ENCFF361FUX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF266TDL bam alignments ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000WUU, ENCFF807MUK 752990309 ENCODE Processing Pipeline 14568a9f247b4de43db4bd0a7925f884 https://www.encodeproject.org/files/ENCFF266TDL/@@download/ENCFF266TDL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000RYH bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RYO 1603572864 Vishwanath Iyer, UTA 594616943fff9d12eeec3b46ea61b3ed https://www.encodeproject.org/files/ENCFF000RYH/@@download/ENCFF000RYH.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RYJ bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RYP 1715139125 Vishwanath Iyer, UTA d1417675a3a73c9f349c09b0ccbdf6df https://www.encodeproject.org/files/ENCFF000RYJ/@@download/ENCFF000RYJ.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF104KIS bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RYP, ENCFF807MUK 1381210309 ENCODE Processing Pipeline af8e8849cff67d4594b5c945b182c1c8 https://www.encodeproject.org/files/ENCFF104KIS/@@download/ENCFF104KIS.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF364WAK bam alignments ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RYO, ENCFF807MUK 1202479705 ENCODE Processing Pipeline 0612320c587700434a6aef5322e58d39 https://www.encodeproject.org/files/ENCFF364WAK/@@download/ENCFF364WAK.bam hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF000RZM bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RZX 827628909 Vishwanath Iyer, UTA fe704d42067e1ce265e3eaa8e0d68909 https://www.encodeproject.org/files/ENCFF000RZM/@@download/ENCFF000RZM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000RZO bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RZY 934567132 Vishwanath Iyer, UTA f1cdeda8b02e54e5a7732af96b2636f5 https://www.encodeproject.org/files/ENCFF000RZO/@@download/ENCFF000RZO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF470ZFI bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RZX, ENCFF807MUK 588870250 ENCODE Processing Pipeline d72e5b5e8e2df7b1a8ffe9459f61f298 https://www.encodeproject.org/files/ENCFF470ZFI/@@download/ENCFF470ZFI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF252RUC bam alignments ENCSR000DMV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RZY, ENCFF807MUK 658182352 ENCODE Processing Pipeline 4d41ecf65a9ecac3a0c717a5a127d3dc https://www.encodeproject.org/files/ENCFF252RUC/@@download/ENCFF252RUC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF289FZF bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000ZFW, ENCFF807MUK 400718617 ENCODE Processing Pipeline 2f2ad3f9d482705daecd3d8f3ad60a16 https://www.encodeproject.org/files/ENCFF289FZF/@@download/ENCFF289FZF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF079OBK bam alignments ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000ZFS, ENCFF807MUK 770018266 ENCODE Processing Pipeline 0c08c51c01df257fb62bd3eb0ab99f45 https://www.encodeproject.org/files/ENCFF079OBK/@@download/ENCFF079OBK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF000ZLQ bam alignments ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZLT 535640280 Peggy Farnham, USC 6bc6bbc99050130601a2350d6bb4f6f9 https://www.encodeproject.org/files/ENCFF000ZLQ/@@download/ENCFF000ZLQ.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZLR bam alignments ENCSR000EWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZLW 621405636 Peggy Farnham, USC cd7c956392c4629f46946f15ead95985 https://www.encodeproject.org/files/ENCFF000ZLR/@@download/ENCFF000ZLR.bam hg19 released low read length biological replicates with identical biosample ENCFF846ANN bam alignments ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF000RSM, ENCFF807MUK 707607854 ENCODE Processing Pipeline 5e855522c98d29adf0015d97f0b45f2f https://www.encodeproject.org/files/ENCFF846ANN/@@download/ENCFF846ANN.bam hg19 released low read length, low read depth control extremely low read depth ENCFF262TII bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PRB, ENCFF807MUK 398590956 ENCODE Processing Pipeline 24b83281ca0401b087bc93eac85d3693 https://www.encodeproject.org/files/ENCFF262TII/@@download/ENCFF262TII.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF388UBE bam alignments ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PRD, ENCFF807MUK 553190048 ENCODE Processing Pipeline dce0a560258678c452ac0edc6ea8d2c4 https://www.encodeproject.org/files/ENCFF388UBE/@@download/ENCFF388UBE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF988KTE bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PNM, ENCFF807MUK 272457289 ENCODE Processing Pipeline 82009fc352965563b1d7683e808e3e48 https://www.encodeproject.org/files/ENCFF988KTE/@@download/ENCFF988KTE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF541JLQ bam alignments ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PNT, ENCFF807MUK 780184526 ENCODE Processing Pipeline c83e2c246f862503ee31529b3ce6fe80 https://www.encodeproject.org/files/ENCFF541JLQ/@@download/ENCFF541JLQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF975GAM bam alignments ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 100 ENCFF741YBV, ENCFF746OCB, ENCFF807MUK 3576448677 ENCODE Processing Pipeline 8fb42cc6e2419cd54a81283d1f5bed32 https://www.encodeproject.org/files/ENCFF975GAM/@@download/ENCFF975GAM.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF520WAB bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCW, ENCFF807MUK 246971146 ENCODE Processing Pipeline 1e35756296cde948e87bc9b786f83b6f https://www.encodeproject.org/files/ENCFF520WAB/@@download/ENCFF520WAB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF294HHJ bam alignments ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCX, ENCFF807MUK 586538608 ENCODE Processing Pipeline 9df4f20d23579efe405286e18b24958c https://www.encodeproject.org/files/ENCFF294HHJ/@@download/ENCFF294HHJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF427ZOV bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001HPL, ENCFF807MUK 523536143 ENCODE Processing Pipeline 3208d98a8b2382717fb023195088cb90 https://www.encodeproject.org/files/ENCFF427ZOV/@@download/ENCFF427ZOV.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF268MTM bam alignments ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HPM, ENCFF807MUK 585481905 ENCODE Processing Pipeline 11cbf6cb2520d4dcf599f8a6f555994c https://www.encodeproject.org/files/ENCFF268MTM/@@download/ENCFF268MTM.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF882JQN bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGN, ENCFF807MUK 213708414 ENCODE Processing Pipeline 2dbe6ff4702842a1a5052cdcff6f52df https://www.encodeproject.org/files/ENCFF882JQN/@@download/ENCFF882JQN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF037BXU bam alignments ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QGQ, ENCFF807MUK 817437214 ENCODE Processing Pipeline 98ac12c407f364c15953b862f5527a53 https://www.encodeproject.org/files/ENCFF037BXU/@@download/ENCFF037BXU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF000XCL bam alignments ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XCO 641722062 Michael Snyder, Stanford ab2617f6907f3b322cb9b4e152c5a122 https://www.encodeproject.org/files/ENCFF000XCL/@@download/ENCFF000XCL.bam hg19 released low read length biological replicates with identical biosample ENCFF000XCM bam alignments ENCSR000ECM ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XCQ 403704812 Michael Snyder, Stanford e33e572aa9d14c4e2234404ab1c6f505 https://www.encodeproject.org/files/ENCFF000XCM/@@download/ENCFF000XCM.bam hg19 released low read length biological replicates with identical biosample ENCFF343LTM bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000ARP, ENCFF807MUK 673867842 ENCODE Processing Pipeline ead9079d1e6f5453b309d6c681e3690f https://www.encodeproject.org/files/ENCFF343LTM/@@download/ENCFF343LTM.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF389RQC bam alignments ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000ARV, ENCFF807MUK 285068500 ENCODE Processing Pipeline e623ee04d1664db184cc7db7c2583e26 https://www.encodeproject.org/files/ENCFF389RQC/@@download/ENCFF389RQC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF000XAH bam alignments ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAR 399772729 Michael Snyder, Stanford 2706f0a93a151faa1e325f63db7ec8e5 https://www.encodeproject.org/files/ENCFF000XAH/@@download/ENCFF000XAH.bam hg19 released low read length biological replicates with identical biosample ENCFF000XAI bam alignments ENCSR000EDB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAT 459727437 Michael Snyder, Stanford fcdba6478a1b50a4978e3c321e2943b4 https://www.encodeproject.org/files/ENCFF000XAI/@@download/ENCFF000XAI.bam hg19 released low read length biological replicates with identical biosample ENCFF000RDU bam alignments ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000REC 1107675843 Richard Myers, HAIB 9e202354e176a4afdea4e7475d56aa9a https://www.encodeproject.org/files/ENCFF000RDU/@@download/ENCFF000RDU.bam hg19 released biological replicates with identical biosample ENCFF000RDX bam alignments ENCSR000BUQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TEAD4-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REI 1373580972 Richard Myers, HAIB ed173a8c6b65679ed212f4dfbf47a44c https://www.encodeproject.org/files/ENCFF000RDX/@@download/ENCFF000RDX.bam hg19 released biological replicates with identical biosample ENCFF471JZR bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001HGI, ENCFF807MUK 418740844 ENCODE Processing Pipeline ee0815514819f5148c9c79fd42dcfa4e https://www.encodeproject.org/files/ENCFF471JZR/@@download/ENCFF471JZR.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF325SIY bam alignments ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 3 36 ENCFF001HGK, ENCFF807MUK 630654608 ENCODE Processing Pipeline 2b3f4796ea0534629b0eeab974fdfe9a https://www.encodeproject.org/files/ENCFF325SIY/@@download/ENCFF325SIY.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF020GML bam alignments ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000BAG, ENCFF807MUK 1084241534 ENCODE Processing Pipeline c9ecf70582d9abd3a32ed85721475a89 https://www.encodeproject.org/files/ENCFF020GML/@@download/ENCFF020GML.bam hg19 released low read length, inconsistent platforms ENCFF295PYU bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000WVS, ENCFF807MUK 425740990 ENCODE Processing Pipeline 10626129dbf1071decb2b204b39f764a https://www.encodeproject.org/files/ENCFF295PYU/@@download/ENCFF295PYU.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF714YJQ bam alignments ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000WVX, ENCFF807MUK 318860483 ENCODE Processing Pipeline 16baddc8a923bd015666cf242879107f https://www.encodeproject.org/files/ENCFF714YJQ/@@download/ENCFF714YJQ.bam hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF000ZMC bam alignments ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000ZMK 529842741 Michael Snyder, Stanford f1f3b88fb3f579eb0d217cd7dafc68fb https://www.encodeproject.org/files/ENCFF000ZMC/@@download/ENCFF000ZMC.bam hg19 released low read length biological replicates with identical biosample ENCFF000ZMD bam alignments ENCSR000EHR ChIP-seq EFO:0002798 NB4 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000ZMM 500659677 Michael Snyder, Stanford 018a96c1c94273e4cf638250d02b2ef8 https://www.encodeproject.org/files/ENCFF000ZMD/@@download/ENCFF000ZMD.bam hg19 released low read length biological replicates with identical biosample ENCFF892ZFJ bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000OFY, ENCFF807MUK 1085999808 ENCODE Processing Pipeline 32f213cd5ddf531a18aa2b54cebcea02 https://www.encodeproject.org/files/ENCFF892ZFJ/@@download/ENCFF892ZFJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF462CSN bam alignments ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000OGA, ENCFF807MUK 1168513242 ENCODE Processing Pipeline ab766b1abc296a52e71558462f44ac47 https://www.encodeproject.org/files/ENCFF462CSN/@@download/ENCFF462CSN.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF364PXD bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HAJ, ENCFF807MUK 573342220 ENCODE Processing Pipeline d53cdb507d945ddaa2654f8d8eaa4f0b https://www.encodeproject.org/files/ENCFF364PXD/@@download/ENCFF364PXD.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF054SRM bam alignments ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HAI, ENCFF807MUK 371053695 ENCODE Processing Pipeline cbcb3188bf317a37327d52f775d3ebee https://www.encodeproject.org/files/ENCFF054SRM/@@download/ENCFF054SRM.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF000WZU bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XAA 734120947 Michael Snyder, Stanford f0ec8fed089b73bbd2ec5a1c66d2c333 https://www.encodeproject.org/files/ENCFF000WZU/@@download/ENCFF000WZU.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZV bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XAC 727223225 Michael Snyder, Stanford 3b09d89488b0c642e35cd74f6e048fc3 https://www.encodeproject.org/files/ENCFF000WZV/@@download/ENCFF000WZV.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000WZX bam alignments ENCSR000EDL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SMARCC2-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000XAB 773318353 Michael Snyder, Stanford 512944f8481e404a752ce1b48df4dc23 https://www.encodeproject.org/files/ENCFF000WZX/@@download/ENCFF000WZX.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF420JTZ bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NXS, ENCFF807MUK 1318420704 ENCODE Processing Pipeline a13d550c92ed22718bcc0b1ab646b129 https://www.encodeproject.org/files/ENCFF420JTZ/@@download/ENCFF420JTZ.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF441NFC bam alignments ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NXT, ENCFF807MUK 1371827399 ENCODE Processing Pipeline 67fb6af540890a2d6be971ec29ee38e3 https://www.encodeproject.org/files/ENCFF441NFC/@@download/ENCFF441NFC.bam hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF022SZB bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZNX, ENCFF807MUK 457000859 ENCODE Processing Pipeline 20988126dc9d93ab95f2276c7b3e0877 https://www.encodeproject.org/files/ENCFF022SZB/@@download/ENCFF022SZB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF014XIN bam alignments ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZNZ, ENCFF807MUK 610643625 ENCODE Processing Pipeline 99007aa55c030d748db1d01ea2dd96f0 https://www.encodeproject.org/files/ENCFF014XIN/@@download/ENCFF014XIN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF899IHZ bam alignments ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF095HAZ, ENCFF588VLV, ENCFF807MUK 3773973303 ENCODE Processing Pipeline b2dc35d2958e20df7c9b5361b8c86ade https://www.encodeproject.org/files/ENCFF899IHZ/@@download/ENCFF899IHZ.bam hg19 released low read depth, antibody characterized with exemption ENCFF929ULB bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF807MUK, ENCFF890OZT 1094075945 ENCODE Processing Pipeline 93b0ce29bdd11a6d0528fb9f647e74bd https://www.encodeproject.org/files/ENCFF929ULB/@@download/ENCFF929ULB.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF062OKC bam alignments ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCP, ENCFF807MUK 280530747 ENCODE Processing Pipeline fb418d4b5ebff02f851b63a88d76a35d https://www.encodeproject.org/files/ENCFF062OKC/@@download/ENCFF062OKC.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF000XNS bam alignments ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XNV 464638127 Michael Snyder, Stanford a4596c04fcf6a961d2711b7ecfb3dccd https://www.encodeproject.org/files/ENCFF000XNS/@@download/ENCFF000XNS.bam hg19 released low read length biological replicates with identical biosample ENCFF000XNT bam alignments ENCSR000ECO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XNX 595164982 Michael Snyder, Stanford 1eb7bfa3d82540949a5858e84a7c5716 https://www.encodeproject.org/files/ENCFF000XNT/@@download/ENCFF000XNT.bam hg19 released low read length biological replicates with identical biosample ENCFF273CUH bam redacted alignments ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 76 ENCFF252MDF, ENCFF807MUK, ENCFF807RJJ 649785671 ENCODE Processing Pipeline acceaf72c37325e25cc72f0a8611645f https://www.encodeproject.org/files/ENCFF273CUH/@@download/ENCFF273CUH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF000ZKP bam alignments ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000ZLE 195648748 Peggy Farnham, USC f547d5c526bf94abf9a15efccdc2fce9 https://www.encodeproject.org/files/ENCFF000ZKP/@@download/ENCFF000ZKP.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000ZKS bam alignments ENCSR000EWS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000ZKT, ENCFF000ZKV 991185470 Peggy Farnham, USC d07f215008868444d2ecc83a36d4ef39 https://www.encodeproject.org/files/ENCFF000ZKS/@@download/ENCFF000ZKS.bam hg19 released low read length, mixed read lengths biological replicates with identical biosample insufficient read length ENCFF632LAG bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF002EHI, ENCFF002EHK, ENCFF807MUK 4177760148 ENCODE Processing Pipeline 29de6f4d838fb1fcac22b5770ce5a3e3 https://www.encodeproject.org/files/ENCFF632LAG/@@download/ENCFF632LAG.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF380JLB bam alignments ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 100 ENCFF002EHL, ENCFF002EHM, ENCFF230ANA, ENCFF699KPK, ENCFF807MUK 3467252660 ENCODE Processing Pipeline 105442f803f67340e153578854068118 https://www.encodeproject.org/files/ENCFF380JLB/@@download/ENCFF380JLB.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF006UXO bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAD, ENCFF807MUK 488117088 ENCODE Processing Pipeline 4068c0f0a3a9ae9ec765fb3bb351fbdd https://www.encodeproject.org/files/ENCFF006UXO/@@download/ENCFF006UXO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF468AKT bam alignments ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAG, ENCFF807MUK 594261500 ENCODE Processing Pipeline 2a361fc67c68b5ce356d2d4892d8e622 https://www.encodeproject.org/files/ENCFF468AKT/@@download/ENCFF468AKT.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF000QND bam alignments ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QNS 1528820695 Richard Myers, HAIB 0921c0d6ebd17b950d2d9810442fa464 https://www.encodeproject.org/files/ENCFF000QND/@@download/ENCFF000QND.bam hg19 released biological replicates with identical biosample ENCFF000QNE bam alignments ENCSR000BST ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QNP 797259328 Richard Myers, HAIB 2c89c1acede97c771b0dd7066082cdc0 https://www.encodeproject.org/files/ENCFF000QNE/@@download/ENCFF000QNE.bam hg19 released biological replicates with identical biosample ENCFF177SSB bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000ZBZ, ENCFF807MUK 519348281 ENCODE Processing Pipeline 91d11798ecc89f58f33fd397755d0cba https://www.encodeproject.org/files/ENCFF177SSB/@@download/ENCFF177SSB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF495MQP bam alignments ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000ZCA, ENCFF807MUK 434984367 ENCODE Processing Pipeline 414cfbb6291c2f84f68f24224a817baf https://www.encodeproject.org/files/ENCFF495MQP/@@download/ENCFF495MQP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000PCH bam alignments ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PCS 1234671592 Richard Myers, HAIB d883c6637494ec712ae766bb1a077c09 https://www.encodeproject.org/files/ENCFF000PCH/@@download/ENCFF000PCH.bam hg19 released biological replicates with identical biosample ENCFF000PCK bam alignments ENCSR000BSC ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PCV 1495916403 Richard Myers, HAIB c580f94f124fcfb0eb72b9b1d9a33511 https://www.encodeproject.org/files/ENCFF000PCK/@@download/ENCFF000PCK.bam hg19 released biological replicates with identical biosample ENCFF000QYC bam alignments ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYP 1100662972 Richard Myers, HAIB 82f72a5f130a5307313e25f3da873f57 https://www.encodeproject.org/files/ENCFF000QYC/@@download/ENCFF000QYC.bam hg19 released biological replicates with identical biosample ENCFF000QYG bam alignments ENCSR000BTG ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYW 2211026910 Richard Myers, HAIB 094edd6b07ea829cc973ad9b4aabc9aa https://www.encodeproject.org/files/ENCFF000QYG/@@download/ENCFF000QYG.bam hg19 released biological replicates with identical biosample ENCFF000REB bam alignments ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RER 1418668884 Richard Myers, HAIB e9cc37f8a076df0b2e2ef50fb5e0464a https://www.encodeproject.org/files/ENCFF000REB/@@download/ENCFF000REB.bam hg19 released biological replicates with identical biosample ENCFF000REG bam alignments ENCSR000BTZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000REP 1256032224 Richard Myers, HAIB 41ff1d8936e4201eca202f2c6330a811 https://www.encodeproject.org/files/ENCFF000REG/@@download/ENCFF000REG.bam hg19 released biological replicates with identical biosample ENCFF573VVJ bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000YNF, ENCFF807MUK 520882474 ENCODE Processing Pipeline 6a2e4da0cda14b18462a78f06e1c55fc https://www.encodeproject.org/files/ENCFF573VVJ/@@download/ENCFF573VVJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF942NUX bam alignments ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000YND, ENCFF807MUK 504562752 ENCODE Processing Pipeline 9473f4a949dcea619d705b5c587fc993 https://www.encodeproject.org/files/ENCFF942NUX/@@download/ENCFF942NUX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XJW bam alignments ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKG 392016955 Michael Snyder, Stanford 4fc9f095875f6cc7077e65d80034c9f1 https://www.encodeproject.org/files/ENCFF000XJW/@@download/ENCFF000XJW.bam hg19 released low read length biological replicates with identical biosample ENCFF000XJY bam alignments ENCSR000ECT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKF 368942515 Michael Snyder, Stanford 66b15c65faae91cff5e4369ac5b4c68f https://www.encodeproject.org/files/ENCFF000XJY/@@download/ENCFF000XJY.bam hg19 released low read length biological replicates with identical biosample ENCFF538JCZ bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QAQ, ENCFF807MUK 304054813 ENCODE Processing Pipeline 7525eba97ed590f1de5640cb687d7a12 https://www.encodeproject.org/files/ENCFF538JCZ/@@download/ENCFF538JCZ.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF175EOK bam alignments ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QAV, ENCFF807MUK 233968251 ENCODE Processing Pipeline aeb8475817d5c22fd20e0b14e59a6cdd https://www.encodeproject.org/files/ENCFF175EOK/@@download/ENCFF175EOK.bam hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF834AOC bam alignments ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF065ZFK, ENCFF655KYQ, ENCFF807MUK 3803079480 ENCODE Processing Pipeline 4ccdddccda0a08ae6acaa0feafd6b233 https://www.encodeproject.org/files/ENCFF834AOC/@@download/ENCFF834AOC.bam hg19 released antibody characterized with exemption missing control alignments ENCFF891NAK bam alignments ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF530VUW, ENCFF807MUK, ENCFF857XTL 3631553059 ENCODE Processing Pipeline 168ab64d1c3a067556fcd678268b4b96 https://www.encodeproject.org/files/ENCFF891NAK/@@download/ENCFF891NAK.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000NCP bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000NDA 1852463805 Richard Myers, HAIB 685cef18a808f8d5a9af539edd054387 https://www.encodeproject.org/files/ENCFF000NCP/@@download/ENCFF000NCP.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF000NCQ bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000NDD 1729457141 Richard Myers, HAIB ca09e59225e24d21e55bd9251e7ce8a6 https://www.encodeproject.org/files/ENCFF000NCQ/@@download/ENCFF000NCQ.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF901AZD bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NDD, ENCFF807MUK 437951298 ENCODE Processing Pipeline 2189b3ba5e65fee45fe438b32afa4fc3 https://www.encodeproject.org/files/ENCFF901AZD/@@download/ENCFF901AZD.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF579FIX bam alignments ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NDA, ENCFF807MUK 360598553 ENCODE Processing Pipeline 20f0ee2c209bce27f929b24872838a7b https://www.encodeproject.org/files/ENCFF579FIX/@@download/ENCFF579FIX.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF916JGB bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 28 ENCFF000ZCT, ENCFF807MUK 381347388 ENCODE Processing Pipeline 5984040e0d4293715d9536cb9394d086 https://www.encodeproject.org/files/ENCFF916JGB/@@download/ENCFF916JGB.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF002THP bam alignments ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 28 ENCFF000ZCR, ENCFF807MUK 477125350 ENCODE Processing Pipeline 3b662f7de84be15e252eca4ed0fe4801 https://www.encodeproject.org/files/ENCFF002THP/@@download/ENCFF002THP.bam hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF656OLR bam alignments ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 100 ENCFF715ESG, ENCFF740EMX, ENCFF807MUK 3374746671 ENCODE Processing Pipeline ba9f2648e8c9e7794167ebf66923f548 https://www.encodeproject.org/files/ENCFF656OLR/@@download/ENCFF656OLR.bam hg19 released antibody characterized with exemption ENCFF276SUL bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000BNS, ENCFF807MUK 251070716 ENCODE Processing Pipeline 5e0cd95b1c79b2aa9178b0114d1046ec https://www.encodeproject.org/files/ENCFF276SUL/@@download/ENCFF276SUL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF620MCZ bam alignments ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000BNU, ENCFF807MUK 674334507 ENCODE Processing Pipeline 03f04d4ce821a0379cd4d7216d7bbc98 https://www.encodeproject.org/files/ENCFF620MCZ/@@download/ENCFF620MCZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF650RQR bam alignments ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCK, ENCFF807MUK 454945489 ENCODE Processing Pipeline d26ec999644a1b46254e36c7e1eac6d3 https://www.encodeproject.org/files/ENCFF650RQR/@@download/ENCFF650RQR.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF000XKN bam alignments ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XKT 511619748 Michael Snyder, Stanford 806c1e3344b5d2c6bb543cb7185ff337 https://www.encodeproject.org/files/ENCFF000XKN/@@download/ENCFF000XKN.bam hg19 released low read length biological replicates with identical biosample ENCFF000XKP bam alignments ENCSR000ECX ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XKU 397160857 Michael Snyder, Stanford 400400a2ac63cc475a1cbeca5344ee4b https://www.encodeproject.org/files/ENCFF000XKP/@@download/ENCFF000XKP.bam hg19 released low read length biological replicates with identical biosample ENCFF514TTH bam alignments ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 100 ENCFF768RJW, ENCFF788VTV, ENCFF807MUK 3842807007 ENCODE Processing Pipeline 043a4d3caa0255433677139bb8f19a66 https://www.encodeproject.org/files/ENCFF514TTH/@@download/ENCFF514TTH.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000XLO bam alignments ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMQ 331438991 Michael Snyder, Stanford 9b0cfca582fa7fb97b0129fcf1c3060c https://www.encodeproject.org/files/ENCFF000XLO/@@download/ENCFF000XLO.bam hg19 released low read length biological replicates with identical biosample ENCFF000XLP bam alignments ENCSR000EDC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMR 278234725 Michael Snyder, Stanford 43e9b4f588428d6de47987253af0fb1c https://www.encodeproject.org/files/ENCFF000XLP/@@download/ENCFF000XLP.bam hg19 released low read length biological replicates with identical biosample ENCFF000XRD bam alignments ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRO 353271037 Michael Snyder, Stanford 0c42198dc14e15f8b11bd248a0142b4c https://www.encodeproject.org/files/ENCFF000XRD/@@download/ENCFF000XRD.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRE bam alignments ENCSR000EEW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour ESRRA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XRN 166725656 Michael Snyder, Stanford 2198c82a88b53aeaafdf7d77321ef330 https://www.encodeproject.org/files/ENCFF000XRE/@@download/ENCFF000XRE.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF944EAM bam alignments ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 76 ENCFF117VHU, ENCFF450ZWT, ENCFF807MUK 5123136393 ENCODE Processing Pipeline ec3a928ba0d789571bbefe08d113c1ae https://www.encodeproject.org/files/ENCFF944EAM/@@download/ENCFF944EAM.bam hg19 released antibody characterized with exemption missing control alignments ENCFF106IJG bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000YGQ, ENCFF807MUK 1026537936 ENCODE Processing Pipeline e7c441f88dc275be4ddb0e628749f68b https://www.encodeproject.org/files/ENCFF106IJG/@@download/ENCFF106IJG.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF823NIQ bam alignments ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000YGJ, ENCFF807MUK 1136451441 ENCODE Processing Pipeline 7f36ed455e6e004da7c1233f777568b0 https://www.encodeproject.org/files/ENCFF823NIQ/@@download/ENCFF823NIQ.bam hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF000XHQ bam alignments ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF000XHT 465155715 Michael Snyder, Stanford 2c2b7fcd8789472ae1afc29b6824b3e9 https://www.encodeproject.org/files/ENCFF000XHQ/@@download/ENCFF000XHQ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000XHR bam alignments ENCSR000ECL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF000XHV 542596204 Michael Snyder, Stanford 13af305861f4baab44eeaf511af5320e https://www.encodeproject.org/files/ENCFF000XHR/@@download/ENCFF000XHR.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF076ZNH bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 36 ENCFF001GVU, ENCFF807MUK 91948480 ENCODE Processing Pipeline e11de3efbf789cfe9774c4baf7286a6f https://www.encodeproject.org/files/ENCFF076ZNH/@@download/ENCFF076ZNH.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF874DYB bam alignments ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 36 ENCFF001GWB, ENCFF807MUK 447112016 ENCODE Processing Pipeline d6c79871bb0b5a48f49a03bf4239a6ba https://www.encodeproject.org/files/ENCFF874DYB/@@download/ENCFF874DYB.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF187CGT bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF531OCK, ENCFF807MUK 332206912 ENCODE Processing Pipeline 447a8e6638f4db0928974ab2b11e67f0 https://www.encodeproject.org/files/ENCFF187CGT/@@download/ENCFF187CGT.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF536GLO bam alignments ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF807MUK, ENCFF873QQB 507393688 ENCODE Processing Pipeline ed8d1fb6061be1de84a72992a0e536a6 https://www.encodeproject.org/files/ENCFF536GLO/@@download/ENCFF536GLO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF788MNU bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QDG, ENCFF807MUK 293979846 ENCODE Processing Pipeline cc8f5b992246f4e23fa74411c7ca3a91 https://www.encodeproject.org/files/ENCFF788MNU/@@download/ENCFF788MNU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF196OAS bam alignments ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QDO, ENCFF807MUK 607852691 ENCODE Processing Pipeline a58e9b6256175d512f082988b093d258 https://www.encodeproject.org/files/ENCFF196OAS/@@download/ENCFF196OAS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF000XMA bam alignments ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMD 353595046 Peggy Farnham, USC eb2bd3aff8b492b07aef2f905b424442 https://www.encodeproject.org/files/ENCFF000XMA/@@download/ENCFF000XMA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XMB bam alignments ENCSR000EVF ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMF 255954010 Peggy Farnham, USC 9d35a364c46b33c4ec49181ea6bb1e98 https://www.encodeproject.org/files/ENCFF000XMB/@@download/ENCFF000XMB.bam hg19 released low read length biological replicates with identical biosample ENCFF065NPZ bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QTC, ENCFF807MUK 565866240 ENCODE Processing Pipeline dd338977077c3af667bf1df754acdb04 https://www.encodeproject.org/files/ENCFF065NPZ/@@download/ENCFF065NPZ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF533ZHL bam alignments ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QTI, ENCFF807MUK 873823958 ENCODE Processing Pipeline 68aea9298aa833cf19675dec1c1e8594 https://www.encodeproject.org/files/ENCFF533ZHL/@@download/ENCFF533ZHL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF839BYC bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000QZG, ENCFF807MUK 1264818201 ENCODE Processing Pipeline 2ce3a3cde18098d348f808b99ab0bdd8 https://www.encodeproject.org/files/ENCFF839BYC/@@download/ENCFF839BYC.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF189JRN bam alignments ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000QZK, ENCFF807MUK 2221141812 ENCODE Processing Pipeline b239d5b0bed5c520331056f0d86a26ef https://www.encodeproject.org/files/ENCFF189JRN/@@download/ENCFF189JRN.bam hg19 released biological replicates with identical biosample missing control alignments ENCFF118VIO bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF583ZBF, ENCFF807MUK 574117427 ENCODE Processing Pipeline 3a9b0b04c76516144f1a3c422e20d454 https://www.encodeproject.org/files/ENCFF118VIO/@@download/ENCFF118VIO.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF979MVK bam alignments ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF315OYW, ENCFF807MUK 521117816 ENCODE Processing Pipeline 6e61a27da24ef3c8d229370974b8b465 https://www.encodeproject.org/files/ENCFF979MVK/@@download/ENCFF979MVK.bam hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF405VXR bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XGV, ENCFF807MUK 1034457315 ENCODE Processing Pipeline 3658287952038415bbb2cc4a3c43e805 https://www.encodeproject.org/files/ENCFF405VXR/@@download/ENCFF405VXR.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF407WOE bam alignments ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XGX, ENCFF807MUK 666608145 ENCODE Processing Pipeline e779ea7b22e79cfa78f5695d636d5574 https://www.encodeproject.org/files/ENCFF407WOE/@@download/ENCFF407WOE.bam hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF009VFJ bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000ANM, ENCFF807MUK 204453645 ENCODE Processing Pipeline 00bac761fe4c5d1385da10dfd7d1dde7 https://www.encodeproject.org/files/ENCFF009VFJ/@@download/ENCFF009VFJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF724KQS bam alignments ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000ANN, ENCFF807MUK 790809493 ENCODE Processing Pipeline 6dda31fc7f60bc37e7e32b8531c21278 https://www.encodeproject.org/files/ENCFF724KQS/@@download/ENCFF724KQS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF436BMH bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000PUT, ENCFF807MUK 818890100 ENCODE Processing Pipeline 90e09de432ddb79ba3e0d5e9356b0bbd https://www.encodeproject.org/files/ENCFF436BMH/@@download/ENCFF436BMH.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF822WIL bam alignments ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000PUS, ENCFF807MUK 882620732 ENCODE Processing Pipeline 1bc9751958ee737c0542b0999c461627 https://www.encodeproject.org/files/ENCFF822WIL/@@download/ENCFF822WIL.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF000PKN bam alignments ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PKX 1496665096 Richard Myers, HAIB 8f081b035f302eba2925c86b26501dd4 https://www.encodeproject.org/files/ENCFF000PKN/@@download/ENCFF000PKN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PKO bam alignments ENCSR000BTM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PKZ 1886309353 Richard Myers, HAIB 66c8d6d95c4ef96af442b5f1c46acdaa https://www.encodeproject.org/files/ENCFF000PKO/@@download/ENCFF000PKO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF097SZB bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PYP, ENCFF807MUK 173750695 ENCODE Processing Pipeline 43dec3433f9a8fd555d3943a7234b628 https://www.encodeproject.org/files/ENCFF097SZB/@@download/ENCFF097SZB.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF487BCT bam alignments ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PYR, ENCFF807MUK 358358664 ENCODE Processing Pipeline 63fb3ab8092b08728b1f64e5f62bcdf7 https://www.encodeproject.org/files/ENCFF487BCT/@@download/ENCFF487BCT.bam hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF502ALK bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTZ, ENCFF807MUK 628333594 ENCODE Processing Pipeline a7fc9ce53890f66b6ad9652b6cc6ade8 https://www.encodeproject.org/files/ENCFF502ALK/@@download/ENCFF502ALK.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848DMA bam alignments ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XUA, ENCFF807MUK 821830191 ENCODE Processing Pipeline 4bf12638efc36d807c182d428fcf6877 https://www.encodeproject.org/files/ENCFF848DMA/@@download/ENCFF848DMA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XPM bam alignments ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XPR 331661630 Michael Snyder, Stanford 4c9866377d431fde637acfad3f21657c https://www.encodeproject.org/files/ENCFF000XPM/@@download/ENCFF000XPM.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XPN bam alignments ENCSR000EEX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XPT 213659069 Michael Snyder, Stanford bef4c23200c1b16448885205fad43ae5 https://www.encodeproject.org/files/ENCFF000XPN/@@download/ENCFF000XPN.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF525YRO bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XTQ, ENCFF807MUK 597701970 ENCODE Processing Pipeline 285b19672042da1c3b65636ace442436 https://www.encodeproject.org/files/ENCFF525YRO/@@download/ENCFF525YRO.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF371NBL bam alignments ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XTR, ENCFF807MUK 749356000 ENCODE Processing Pipeline 9dc1289c0306ff1e63319056be41329f https://www.encodeproject.org/files/ENCFF371NBL/@@download/ENCFF371NBL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF998ZWT bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXT, ENCFF807MUK 365573262 ENCODE Processing Pipeline 1de0f15b1bbccdc2ddae80b8d9255dba https://www.encodeproject.org/files/ENCFF998ZWT/@@download/ENCFF998ZWT.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF823NFU bam alignments ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXU, ENCFF807MUK 341683493 ENCODE Processing Pipeline d25ee73c40f5c8ced639355f494ef099 https://www.encodeproject.org/files/ENCFF823NFU/@@download/ENCFF823NFU.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF000RAP bam alignments ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RBC 1062186505 Richard Myers, HAIB 1cfa63cd43299a70ac9549f08a42acc1 https://www.encodeproject.org/files/ENCFF000RAP/@@download/ENCFF000RAP.bam hg19 released biological replicates with identical biosample ENCFF000RAS bam alignments ENCSR000BUA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EP300-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RBI 1887547671 Richard Myers, HAIB 8622bf399ba2fbfc2bc7f63e0bfb0ea2 https://www.encodeproject.org/files/ENCFF000RAS/@@download/ENCFF000RAS.bam hg19 released biological replicates with identical biosample ENCFF260SFQ bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF349SFU, ENCFF580HUJ, ENCFF807MUK 1882750169 ENCODE Processing Pipeline 4cc258543f677279c19d3b5ddab3a1cd https://www.encodeproject.org/files/ENCFF260SFQ/@@download/ENCFF260SFQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF290WMD bam alignments ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AVL, ENCFF847CCY 827147757 ENCODE Processing Pipeline 3d872f9b25df6b885e3504c1f2839b6d https://www.encodeproject.org/files/ENCFF290WMD/@@download/ENCFF290WMD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF000QXV bam alignments ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYH 1381669464 Richard Myers, HAIB 4d1511e4f7139ff7f0d6ffaff4931801 https://www.encodeproject.org/files/ENCFF000QXV/@@download/ENCFF000QXV.bam hg19 released biological replicates with identical biosample ENCFF000QXY bam alignments ENCSR000BTB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens FOXM1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QYJ 1223341202 Richard Myers, HAIB f9016ae757ea9f2ab0ac94feeed00aa9 https://www.encodeproject.org/files/ENCFF000QXY/@@download/ENCFF000QXY.bam hg19 released biological replicates with identical biosample ENCFF101FNO bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZT, ENCFF807MUK 537106113 ENCODE Processing Pipeline 19a02060a53ef26a6c8728492d627bdc https://www.encodeproject.org/files/ENCFF101FNO/@@download/ENCFF101FNO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF045IIX bam alignments ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF346JZZ, ENCFF807MUK 660707762 ENCODE Processing Pipeline 24b6776e5bbe4ad4f258421cf6003d41 https://www.encodeproject.org/files/ENCFF045IIX/@@download/ENCFF045IIX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF036SLY bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OTG, ENCFF807MUK 540000768 ENCODE Processing Pipeline 1c9a913585ae4a2dfcb4e3c2b19ce673 https://www.encodeproject.org/files/ENCFF036SLY/@@download/ENCFF036SLY.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF655DGW bam alignments ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OTJ, ENCFF807MUK 640669427 ENCODE Processing Pipeline b915f87e4f63b986545fee9e47b2fe4b https://www.encodeproject.org/files/ENCFF655DGW/@@download/ENCFF655DGW.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF309RPK bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000NHM, ENCFF807MUK 1012542744 ENCODE Processing Pipeline 78c2861bc59cefeb82833224adbedb3f https://www.encodeproject.org/files/ENCFF309RPK/@@download/ENCFF309RPK.bam hg19 released low read length biological replicates with identical biosample ENCFF453WTN bam alignments ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NHP, ENCFF807MUK 1369465419 ENCODE Processing Pipeline 852f3b35c115e60d74f35b28d766cde7 https://www.encodeproject.org/files/ENCFF453WTN/@@download/ENCFF453WTN.bam hg19 released low read length biological replicates with identical biosample ENCFF037JQU bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QCI, ENCFF807MUK 552548472 ENCODE Processing Pipeline d0955d8d02d49f9673794d0d352e6997 https://www.encodeproject.org/files/ENCFF037JQU/@@download/ENCFF037JQU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF700OGN bam alignments ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QCH, ENCFF807MUK 670422920 ENCODE Processing Pipeline cfe483c267d3277c8da141e6e9d022bf https://www.encodeproject.org/files/ENCFF700OGN/@@download/ENCFF700OGN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF234GEH bam alignments ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZB, ENCFF807MUK 747268570 ENCODE Processing Pipeline 99556a175a52b7449c03b6f50bee7cc2 https://www.encodeproject.org/files/ENCFF234GEH/@@download/ENCFF234GEH.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF000NPO bam alignments ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000NPV 1529187722 Richard Myers, HAIB 35d16cf6425f61bc78ae6a43dbe3c0f2 https://www.encodeproject.org/files/ENCFF000NPO/@@download/ENCFF000NPO.bam hg19 released biological replicates with identical biosample ENCFF000NPR bam alignments ENCSR000BTD ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens SRF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000NPU 1289540428 Richard Myers, HAIB f16edbd5923d6a51e4076e014a469c6d https://www.encodeproject.org/files/ENCFF000NPR/@@download/ENCFF000NPR.bam hg19 released biological replicates with identical biosample ENCFF000XRJ bam alignments ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XRV 240324725 Michael Snyder, Stanford 8d09e9d4bad482697836a09bc218e8cc https://www.encodeproject.org/files/ENCFF000XRJ/@@download/ENCFF000XRJ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XRK bam alignments ENCSR000EEV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens forskolin and pyruvate 6.0 hour NR3C1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XRU 237406287 Michael Snyder, Stanford 1cd1d45318a5de27f507679d860b9fc8 https://www.encodeproject.org/files/ENCFF000XRK/@@download/ENCFF000XRK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000QFT bam alignments ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF000QGG 214420360 Richard Myers, HAIB e07047a1d59e1463d5b82912d6165396 https://www.encodeproject.org/files/ENCFF000QFT/@@download/ENCFF000QFT.bam hg19 released low read length biological replicates with identical biosample ENCFF000QFU bam alignments ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF000QGJ 853132699 Richard Myers, HAIB 62e1c343f3038cca2157b09042cfdc79 https://www.encodeproject.org/files/ENCFF000QFU/@@download/ENCFF000QFU.bam hg19 released low read length biological replicates with identical biosample ENCFF060WKJ bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OQU, ENCFF807MUK 391131941 ENCODE Processing Pipeline 4339cd5dcb42807620d7bc637c4b4c27 https://www.encodeproject.org/files/ENCFF060WKJ/@@download/ENCFF060WKJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF123VAK bam alignments ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORA, ENCFF807MUK 665029118 ENCODE Processing Pipeline 25309666ae8bdb573cc0d15bf6b58775 https://www.encodeproject.org/files/ENCFF123VAK/@@download/ENCFF123VAK.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF972DXD bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORR, ENCFF807MUK 1129085747 ENCODE Processing Pipeline 6260d72268b4673b315fe651c0e62391 https://www.encodeproject.org/files/ENCFF972DXD/@@download/ENCFF972DXD.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF526YGE bam alignments ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORP, ENCFF807MUK 980378700 ENCODE Processing Pipeline feec554a346d2d531e21937e929e0eb6 https://www.encodeproject.org/files/ENCFF526YGE/@@download/ENCFF526YGE.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF195HFC bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NXE, ENCFF807MUK 263852803 ENCODE Processing Pipeline c12a93f450e4d5bc04edca4ee50c8d70 https://www.encodeproject.org/files/ENCFF195HFC/@@download/ENCFF195HFC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF840QLL bam alignments ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NXJ, ENCFF807MUK 556612043 ENCODE Processing Pipeline 06bc35d694950b40a0026bbcf830ecf7 https://www.encodeproject.org/files/ENCFF840QLL/@@download/ENCFF840QLL.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF691TYS bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000QWZ, ENCFF807MUK 433898773 ENCODE Processing Pipeline 28774575045d2710dce303c952c890a9 https://www.encodeproject.org/files/ENCFF691TYS/@@download/ENCFF691TYS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF041ZFB bam alignments ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000QXE, ENCFF807MUK 1235426041 ENCODE Processing Pipeline fcc5cb2a894ca216486f06899cde1e0c https://www.encodeproject.org/files/ENCFF041ZFB/@@download/ENCFF041ZFB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF000XLW bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XMS 269469374 Michael Snyder, Stanford 8db0093cabf9e881123c217e18dd7b72 https://www.encodeproject.org/files/ENCFF000XLW/@@download/ENCFF000XLW.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF000XLX bam alignments ENCSR000EDD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XMT 308080126 Michael Snyder, Stanford 68c5e23bc79e633aed2985c543b21796 https://www.encodeproject.org/files/ENCFF000XLX/@@download/ENCFF000XLX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF844ECI bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 36 ENCFF000NAA, ENCFF807MUK 524166209 ENCODE Processing Pipeline b931f417a0adc54564c8d14952275a2c https://www.encodeproject.org/files/ENCFF844ECI/@@download/ENCFF844ECI.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF288LFN bam alignments ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 36 ENCFF000MZX, ENCFF807MUK 653405776 ENCODE Processing Pipeline bfb61cc3a27fc67b221d564673121c1c https://www.encodeproject.org/files/ENCFF288LFN/@@download/ENCFF288LFN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF318TMO bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HPY, ENCFF807MUK 387979875 ENCODE Processing Pipeline 58d06959a47c8848135f823d9ba33907 https://www.encodeproject.org/files/ENCFF318TMO/@@download/ENCFF318TMO.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF393HXD bam alignments ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HPZ, ENCFF807MUK 827038810 ENCODE Processing Pipeline 2daf7052c6027f65c8f5fb5bccf413e5 https://www.encodeproject.org/files/ENCFF393HXD/@@download/ENCFF393HXD.bam hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF000ONE bam alignments ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000ONS 1519907558 Richard Myers, HAIB 19564cf5135901ceaa40a948b96c52e7 https://www.encodeproject.org/files/ENCFF000ONE/@@download/ENCFF000ONE.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONF bam alignments ENCSR000BSN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000ONP 1744656070 Richard Myers, HAIB a73b593b8e4ae50075d670627815579b https://www.encodeproject.org/files/ENCFF000ONF/@@download/ENCFF000ONF.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF493YQC bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 36 ENCFF517QCO, ENCFF807MUK 879823958 ENCODE Processing Pipeline 48f0ea85731beb0c3b9a0e3078b7a4ff https://www.encodeproject.org/files/ENCFF493YQC/@@download/ENCFF493YQC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF980QXM bam alignments ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 36 ENCFF420XPW, ENCFF807MUK 431791105 ENCODE Processing Pipeline e043839563eb971fbd95d1bca912542c https://www.encodeproject.org/files/ENCFF980QXM/@@download/ENCFF980QXM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF000WIC bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WIL 871137269 Michael Snyder, Stanford 2e40210775721688cad9a7bdf496ff21 https://www.encodeproject.org/files/ENCFF000WIC/@@download/ENCFF000WIC.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WID bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WIM 867598084 Michael Snyder, Stanford 8928590d5106d3011ed66d1e017aeaea https://www.encodeproject.org/files/ENCFF000WID/@@download/ENCFF000WID.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIE bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 3 ENCFF000WIO 898748409 Michael Snyder, Stanford 194ad6fb43c1d5e70213c8ab976d1657 https://www.encodeproject.org/files/ENCFF000WIE/@@download/ENCFF000WIE.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIF bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 4 ENCFF000WIW 479790334 Michael Snyder, Stanford ae1876f3d5dc2035d64c6bda8513d818 https://www.encodeproject.org/files/ENCFF000WIF/@@download/ENCFF000WIF.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WIG bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 5 ENCFF000WJB 555873910 Michael Snyder, Stanford af6848822bcf6665639d2563639bd399 https://www.encodeproject.org/files/ENCFF000WIG/@@download/ENCFF000WIG.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF000WII bam alignments ENCSR000EAJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 6 ENCFF000WJC 548370469 Michael Snyder, Stanford 196b6840c5325f69fb62b3b4717545cf https://www.encodeproject.org/files/ENCFF000WII/@@download/ENCFF000WII.bam hg19 released mixed read lengths biological replicates with identical biosample insufficient read length ENCFF123NKL bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 36 ENCFF000WWM, ENCFF807MUK 111163742 ENCODE Processing Pipeline 78e26ba5b8cd081ffa77f9aa5e9392b3 https://www.encodeproject.org/files/ENCFF123NKL/@@download/ENCFF123NKL.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF124AWF bam alignments ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 36 ENCFF000WWO, ENCFF000WWQ, ENCFF807MUK 1198915719 ENCODE Processing Pipeline 9701e0e67c7fb73d9039d634b129114f https://www.encodeproject.org/files/ENCFF124AWF/@@download/ENCFF124AWF.bam hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF859KGS bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QLC, ENCFF807MUK 438697653 ENCODE Processing Pipeline 54d59877e85df1a35f7d0ec4cf6f02a9 https://www.encodeproject.org/files/ENCFF859KGS/@@download/ENCFF859KGS.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF920CCJ bam alignments ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QLG, ENCFF807MUK 691782077 ENCODE Processing Pipeline e311fa3ed5ebfe8934071940a176d24a https://www.encodeproject.org/files/ENCFF920CCJ/@@download/ENCFF920CCJ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF000WXK bam alignments ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WXS 392574798 Peggy Farnham, USC c1dae883477e6bb5a074937aace75490 https://www.encodeproject.org/files/ENCFF000WXK/@@download/ENCFF000WXK.bam hg19 released low read length biological replicates with identical biosample ENCFF000WXN bam alignments ENCSR000EVB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens ELK4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WXW 840373132 Peggy Farnham, USC af04df68d1a39212cadbae93468c4911 https://www.encodeproject.org/files/ENCFF000WXN/@@download/ENCFF000WXN.bam hg19 released low read length biological replicates with identical biosample ENCFF536VAX bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OXD, ENCFF807MUK 1155622382 ENCODE Processing Pipeline 9ba6810302c6c86160d3ea953ef3a360 https://www.encodeproject.org/files/ENCFF536VAX/@@download/ENCFF536VAX.bam hg19 released biological replicates with identical biosample ENCFF712GSG bam alignments ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OXG, ENCFF807MUK 1405841745 ENCODE Processing Pipeline 5b2536dde1857ec292a54984f7d20184 https://www.encodeproject.org/files/ENCFF712GSG/@@download/ENCFF712GSG.bam hg19 released biological replicates with identical biosample ENCFF990JRT bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 32 ENCFF000YNY, ENCFF807MUK 362157879 ENCODE Processing Pipeline 6271700d48d736a457c31ab5df5a2745 https://www.encodeproject.org/files/ENCFF990JRT/@@download/ENCFF990JRT.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF778HCA bam alignments ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 32 ENCFF000YNZ, ENCFF807MUK 360015772 ENCODE Processing Pipeline be39b4edc4c7a2e7b1c2248a710c464f https://www.encodeproject.org/files/ENCFF778HCA/@@download/ENCFF778HCA.bam hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF000XIA bam alignments ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XII 479346988 Michael Snyder, Stanford b7874016b493c54616ad7af429a49ed0 https://www.encodeproject.org/files/ENCFF000XIA/@@download/ENCFF000XIA.bam hg19 released low read length biological replicates with identical biosample ENCFF000XIB bam alignments ENCSR000ECU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XIP 298488929 Michael Snyder, Stanford be1a6deefb13e1f9c06540b40eb84aae https://www.encodeproject.org/files/ENCFF000XIB/@@download/ENCFF000XIB.bam hg19 released low read length biological replicates with identical biosample ENCFF720NFF bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000ORG, ENCFF807MUK 686705288 ENCODE Processing Pipeline 4dc24b98db700f734095131f5c8be1e9 https://www.encodeproject.org/files/ENCFF720NFF/@@download/ENCFF720NFF.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF520MDX bam alignments ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000ORK, ENCFF807MUK 980130969 ENCODE Processing Pipeline e8ce4ee1d3bac77cb7735fbb5cf717e1 https://www.encodeproject.org/files/ENCFF520MDX/@@download/ENCFF520MDX.bam hg19 released low read length, low read depth biological replicates with identical biosample ENCFF157DVB bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000AMS, ENCFF807MUK 597529777 ENCODE Processing Pipeline ec4133cb07954870d5b43b484407765a https://www.encodeproject.org/files/ENCFF157DVB/@@download/ENCFF157DVB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF520GVQ bam alignments ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AMU, ENCFF807MUK 828128330 ENCODE Processing Pipeline f0b457670806297c625863059e459e9e https://www.encodeproject.org/files/ENCFF520GVQ/@@download/ENCFF520GVQ.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF000QYL bam alignments ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000QYZ 1939248667 Richard Myers, HAIB 51e6ac9a3fe28cc3d35859fbeef5fe48 https://www.encodeproject.org/files/ENCFF000QYL/@@download/ENCFF000QYL.bam hg19 released biological replicates with identical biosample ENCFF000QYO bam alignments ENCSR000BTH ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens GATA3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000QZA 1903231171 Richard Myers, HAIB 9d0dbf1078536fe49e2069e8142c803e https://www.encodeproject.org/files/ENCFF000QYO/@@download/ENCFF000QYO.bam hg19 released biological replicates with identical biosample ENCFF000RAX bam alignments ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000RBK 1703644977 Richard Myers, HAIB c1641975f76801d22d7eb9d0d7620194 https://www.encodeproject.org/files/ENCFF000RAX/@@download/ENCFF000RAX.bam hg19 released biological replicates with identical biosample ENCFF000RBA bam alignments ENCSR000BVE ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens PBX3-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000RBO 2281535706 Richard Myers, HAIB 63554b2e226ed12b6bd3e947e04631e6 https://www.encodeproject.org/files/ENCFF000RBA/@@download/ENCFF000RBA.bam hg19 released biological replicates with identical biosample ENCFF853XVP bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000CCY, ENCFF807MUK 297615649 ENCODE Processing Pipeline 144749855f5713387f3c22d58a048c4f https://www.encodeproject.org/files/ENCFF853XVP/@@download/ENCFF853XVP.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF442UIU bam alignments ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 36 ENCFF000CCZ, ENCFF807MUK 796916789 ENCODE Processing Pipeline 5521fb8a6c8cd85c01a35503c6b46133 https://www.encodeproject.org/files/ENCFF442UIU/@@download/ENCFF442UIU.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF832OFG bam alignments ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 36 ENCFF000AZO, ENCFF807MUK 551782657 ENCODE Processing Pipeline 6de364f5169abf11acef11b8c4a0d699 https://www.encodeproject.org/files/ENCFF832OFG/@@download/ENCFF832OFG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF000XGK bam alignments ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000XHI 1161848742 Michael Snyder, Stanford 68fe97ec8eb5005f4b686bbb17e21565 https://www.encodeproject.org/files/ENCFF000XGK/@@download/ENCFF000XGK.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000XGL bam alignments ENCSR000EDH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000XHO 932964777 Michael Snyder, Stanford 6b39ba1deab79f00b581a63ee35f1305 https://www.encodeproject.org/files/ENCFF000XGL/@@download/ENCFF000XGL.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF029BUR bam alignments ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 100 ENCFF670ONL, ENCFF807MUK, ENCFF873BBZ 3282857829 ENCODE Processing Pipeline bebf006b25135e4e16e870943e3fd44f https://www.encodeproject.org/files/ENCFF029BUR/@@download/ENCFF029BUR.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF000WYJ bam alignments ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF000WYK 468031017 Peggy Farnham, USC 40ba2a17e70a5c0eac9753d6b6ebf5b9 https://www.encodeproject.org/files/ENCFF000WYJ/@@download/ENCFF000WYJ.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF000WYM bam alignments ENCSR000EUY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF000WYN 497960554 Peggy Farnham, USC 7c900e05eb4b250d04f65d834b993120 https://www.encodeproject.org/files/ENCFF000WYM/@@download/ENCFF000WYM.bam hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF370MLP bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HRL, ENCFF807MUK 239407256 ENCODE Processing Pipeline e119497625dbe2933829c586824e5c42 https://www.encodeproject.org/files/ENCFF370MLP/@@download/ENCFF370MLP.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF007XGO bam alignments ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HRM, ENCFF807MUK 260336751 ENCODE Processing Pipeline 468235ecc5da33758968d427d4776973 https://www.encodeproject.org/files/ENCFF007XGO/@@download/ENCFF007XGO.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF547HWS bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000XPC, ENCFF807MUK 805941165 ENCODE Processing Pipeline 65ac5f343336bd22ecd9f9803f20ac6b https://www.encodeproject.org/files/ENCFF547HWS/@@download/ENCFF547HWS.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF256CVD bam alignments ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000XPA, ENCFF807MUK 826225746 ENCODE Processing Pipeline e065afaec3ddbf84c96cf4439d6aae5d https://www.encodeproject.org/files/ENCFF256CVD/@@download/ENCFF256CVD.bam hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF947XNG bam alignments ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 100 ENCFF112TJG, ENCFF807MUK, ENCFF816RTR 3281766502 ENCODE Processing Pipeline ff12216b0cbc658ef7a647c8174615e0 https://www.encodeproject.org/files/ENCFF947XNG/@@download/ENCFF947XNG.bam hg19 released antibody characterized with exemption ENCFF793DEX bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF769WTD, ENCFF807MUK 919914467 ENCODE Processing Pipeline 52473d7aee7bf8b1d312ac6a2a2f4398 https://www.encodeproject.org/files/ENCFF793DEX/@@download/ENCFF793DEX.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF007VCY bam alignments ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF281HTF, ENCFF807MUK 1090578286 ENCODE Processing Pipeline aa07694af159360b8fdfc9fffa759bd4 https://www.encodeproject.org/files/ENCFF007VCY/@@download/ENCFF007VCY.bam hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF345IDF bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 36 ENCFF000CQU, ENCFF807MUK 154637613 ENCODE Processing Pipeline 70735bac2193fe8986348e40dbc87493 https://www.encodeproject.org/files/ENCFF345IDF/@@download/ENCFF345IDF.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF211UGH bam alignments ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 36 ENCFF000CQV, ENCFF807MUK 424166269 ENCODE Processing Pipeline 347bd6f815f357ebf4ee9613885149b4 https://www.encodeproject.org/files/ENCFF211UGH/@@download/ENCFF211UGH.bam hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF902PDL bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001HXA, ENCFF807MUK 336875082 ENCODE Processing Pipeline ab6be42e041894859a636ddcf740cbd4 https://www.encodeproject.org/files/ENCFF902PDL/@@download/ENCFF902PDL.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF863LNN bam alignments ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001HXB, ENCFF807MUK 220589490 ENCODE Processing Pipeline 9b6388ecdf72ac26e14ffd0c1ecc5743 https://www.encodeproject.org/files/ENCFF863LNN/@@download/ENCFF863LNN.bam hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF508VRU bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 36 ENCFF137VMP, ENCFF807MUK 433147837 ENCODE Processing Pipeline 8c39133b38b080aa8a2ad678995db4ec https://www.encodeproject.org/files/ENCFF508VRU/@@download/ENCFF508VRU.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF968GEX bam alignments ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 36 ENCFF000CBH, ENCFF000CBM, ENCFF807MUK 1423731040 ENCODE Processing Pipeline 7dff9c965bdb1b448821524ad09d479a https://www.encodeproject.org/files/ENCFF968GEX/@@download/ENCFF968GEX.bam hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF933UZL bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NBX, ENCFF807MUK 613633405 ENCODE Processing Pipeline fac701699299207b0a5f233738f9b991 https://www.encodeproject.org/files/ENCFF933UZL/@@download/ENCFF933UZL.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF500MOX bam alignments ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NBZ, ENCFF807MUK 716939290 ENCODE Processing Pipeline 8503fa5b1a9345201d703389dd8fe477 https://www.encodeproject.org/files/ENCFF500MOX/@@download/ENCFF500MOX.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF873WTQ bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF001GWV, ENCFF807MUK 655734780 ENCODE Processing Pipeline 379c3b1218bfc6eafcd54f41fee9f51e https://www.encodeproject.org/files/ENCFF873WTQ/@@download/ENCFF873WTQ.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF316KUR bam alignments ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 36 ENCFF001GWW, ENCFF807MUK 727679421 ENCODE Processing Pipeline 2a15d94b1b3bce483d01bba1b4cefac2 https://www.encodeproject.org/files/ENCFF316KUR/@@download/ENCFF316KUR.bam hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF578QOG bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000WTQ, ENCFF807MUK 706580346 ENCODE Processing Pipeline b5a8a52e69697486d72ed68753dca47a https://www.encodeproject.org/files/ENCFF578QOG/@@download/ENCFF578QOG.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF590SUW bam alignments ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000WTN, ENCFF807MUK 939659262 ENCODE Processing Pipeline be87d7e47777111679267eebcb558747 https://www.encodeproject.org/files/ENCFF590SUW/@@download/ENCFF590SUW.bam hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF000ONV bam alignments ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OOD 1503545873 Richard Myers, HAIB 0c2f67b6616a57f676a5817aa0cfe783 https://www.encodeproject.org/files/ENCFF000ONV/@@download/ENCFF000ONV.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ONW bam alignments ENCSR000BSI ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens E2F6-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OOL 1576096674 Richard Myers, HAIB 974287893d00ab60e7faac53bf5ddc50 https://www.encodeproject.org/files/ENCFF000ONW/@@download/ENCFF000ONW.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000ROM bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000ROU 369612806 Vishwanath Iyer, UTA 49a0bd6730c3950087edd7162a7a286d https://www.encodeproject.org/files/ENCFF000ROM/@@download/ENCFF000ROM.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000RON bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000ROZ 313793081 Vishwanath Iyer, UTA 24c25b458cd7e472af7cff89b91ce706 https://www.encodeproject.org/files/ENCFF000RON/@@download/ENCFF000RON.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF000ROQ bam alignments ENCSR000DKV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 3 ENCFF000ROX 536609157 Vishwanath Iyer, UTA c7afb31b2e0b6a6c11c3f7f6793ff9cc https://www.encodeproject.org/files/ENCFF000ROQ/@@download/ENCFF000ROQ.bam hg19 released inconsistent platforms biological replicates with identical biosample insufficient read length ENCFF154ZWB bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000QFY, ENCFF807MUK 683210409 ENCODE Processing Pipeline 05350367f4c464957b7b82f236fb87c8 https://www.encodeproject.org/files/ENCFF154ZWB/@@download/ENCFF154ZWB.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF696ANF bam alignments ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000QGA, ENCFF807MUK 883557406 ENCODE Processing Pipeline 24250ac6c243fb14a61fb296bafc051d https://www.encodeproject.org/files/ENCFF696ANF/@@download/ENCFF696ANF.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF000RPA bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RPI 653932815 Vishwanath Iyer, UTA 5aca492cee5a348430c7d65f0bec5adc https://www.encodeproject.org/files/ENCFF000RPA/@@download/ENCFF000RPA.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF000RPC bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RPL 720532651 Vishwanath Iyer, UTA ee515d05481406ce25952295920c986d https://www.encodeproject.org/files/ENCFF000RPC/@@download/ENCFF000RPC.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF409FBN bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 33 ENCFF000RPI, ENCFF807MUK 299220233 ENCODE Processing Pipeline aeaa487ce800dcae03e49b44b51189df https://www.encodeproject.org/files/ENCFF409FBN/@@download/ENCFF409FBN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF004NVG bam alignments ENCSR000DKT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 2 36 ENCFF000RPL, ENCFF807MUK 585962741 ENCODE Processing Pipeline f29a64e4afe80e2e71369df5585239c3 https://www.encodeproject.org/files/ENCFF004NVG/@@download/ENCFF004NVG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, mixed read lengths biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking, insufficient read length ENCFF898BAG bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 36 ENCFF000ZPZ, ENCFF807MUK 721893184 ENCODE Processing Pipeline 88674113695f4fc36fbd127fc01df388 https://www.encodeproject.org/files/ENCFF898BAG/@@download/ENCFF898BAG.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF673XHO bam alignments ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 36 ENCFF000ZPW, ENCFF807MUK 950581125 ENCODE Processing Pipeline 2fe3d5e16db415d8adf3e83bd65ffe21 https://www.encodeproject.org/files/ENCFF673XHO/@@download/ENCFF673XHO.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF267TLE bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000OLB, ENCFF807MUK 527290791 ENCODE Processing Pipeline 7529192b314c72ac21b040e20a5a67ef https://www.encodeproject.org/files/ENCFF267TLE/@@download/ENCFF267TLE.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF372NSY bam alignments ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000OLD, ENCFF807MUK 717760471 ENCODE Processing Pipeline 91ffa16adb00261b914dbe5ae7315e7e https://www.encodeproject.org/files/ENCFF372NSY/@@download/ENCFF372NSY.bam hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF364YIH bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 28 ENCFF000YHK, ENCFF807MUK 347023632 ENCODE Processing Pipeline 1f2db662b6347f553ebc5d68fcc52e3d https://www.encodeproject.org/files/ENCFF364YIH/@@download/ENCFF364YIH.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF766XHO bam alignments ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 28 ENCFF000YHJ, ENCFF807MUK 406280920 ENCODE Processing Pipeline 55bde9cd5facac089622bc2e0696b400 https://www.encodeproject.org/files/ENCFF766XHO/@@download/ENCFF766XHO.bam hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF185XXN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000RIL, ENCFF807MUK 369433108 ENCODE Processing Pipeline 4956bf2e0afda6ea5218e54d01079ea3 https://www.encodeproject.org/files/ENCFF185XXN/@@download/ENCFF185XXN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF220EVN bam alignments ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000RIR, ENCFF807MUK 651008145 ENCODE Processing Pipeline 485b6be366b9c1f4dbaea0931fe159d6 https://www.encodeproject.org/files/ENCFF220EVN/@@download/ENCFF220EVN.bam hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF000PGN bam alignments ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000PGX 1484596270 Richard Myers, HAIB cdd7059a6c8503262e96b9453e41ccf1 https://www.encodeproject.org/files/ENCFF000PGN/@@download/ENCFF000PGN.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF000PGO bam alignments ENCSR000BVL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000PGZ 1807374149 Richard Myers, HAIB 15c5e5e4507db8a0663b69eff94f58d3 https://www.encodeproject.org/files/ENCFF000PGO/@@download/ENCFF000PGO.bam hg19 released inconsistent platforms biological replicates with identical biosample ENCFF391IJU bam alignments ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 76 ENCFF211PIU, ENCFF439FBD, ENCFF807MUK 2727751213 ENCODE Processing Pipeline df804198917457fdcb50ab29f2ad6da9 https://www.encodeproject.org/files/ENCFF391IJU/@@download/ENCFF391IJU.bam hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF000RUZ bam alignments ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF000RVE 418922200 Vishwanath Iyer, UTA 630474c9b8d2e6020f4e77eb71966b50 https://www.encodeproject.org/files/ENCFF000RUZ/@@download/ENCFF000RUZ.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF000RVC bam alignments ENCSR000DLW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF000RVI 463619565 Vishwanath Iyer, UTA ab0804b9fda67f8ad14f6fff793659b6 https://www.encodeproject.org/files/ENCFF000RVC/@@download/ENCFF000RVC.bam hg19 released biological replicates with identical biosample insufficient read length ENCFF954NZI bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 36 ENCFF000XUP, ENCFF807MUK 586622309 ENCODE Processing Pipeline 35da8365dcbdafd49011a705ef554c15 https://www.encodeproject.org/files/ENCFF954NZI/@@download/ENCFF954NZI.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF693CAN bam alignments ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 36 ENCFF000XUN, ENCFF807MUK 836734285 ENCODE Processing Pipeline a003eaa95a736d2754284031e87d1978 https://www.encodeproject.org/files/ENCFF693CAN/@@download/ENCFF693CAN.bam hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF546JQP bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 28 ENCFF000VSS, ENCFF807MUK 482593304 ENCODE Processing Pipeline ee34479e0944cb8ab2fc0b89241a9162 https://www.encodeproject.org/files/ENCFF546JQP/@@download/ENCFF546JQP.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF355ZOB bam alignments ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 28 ENCFF000VSV, ENCFF807MUK 878564748 ENCODE Processing Pipeline 678eea37c37f8f8621846d17f53bf5e2 https://www.encodeproject.org/files/ENCFF355ZOB/@@download/ENCFF355ZOB.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF000OYO bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF000OYZ 978940315 Richard Myers, HAIB 0e2cca9d03df0cad85ba15ac6495616e https://www.encodeproject.org/files/ENCFF000OYO/@@download/ENCFF000OYO.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF000OYR bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF000OZC 986211764 Richard Myers, HAIB ca2f4c028ca29186cbe6259a9e0312cf https://www.encodeproject.org/files/ENCFF000OYR/@@download/ENCFF000OYR.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF296CPJ bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 50 ENCFF000OYZ, ENCFF807MUK 370710277 ENCODE Processing Pipeline 979a1213bbf9684170adfe6b1f1e99d8 https://www.encodeproject.org/files/ENCFF296CPJ/@@download/ENCFF296CPJ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF555MNQ bam alignments ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 50 ENCFF000OZC, ENCFF807MUK 613893602 ENCODE Processing Pipeline 320c6e316485bbbf6bec3bb2b2ade034 https://www.encodeproject.org/files/ENCFF555MNQ/@@download/ENCFF555MNQ.bam hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF642SKG bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000NCS, ENCFF807MUK 364681799 ENCODE Processing Pipeline fb80aa72981d6338a81e41b8ce2a8aca https://www.encodeproject.org/files/ENCFF642SKG/@@download/ENCFF642SKG.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF966AYA bam alignments ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000NCU, ENCFF807MUK 528559530 ENCODE Processing Pipeline af2f78b6faeed4661e1516fd966f5515 https://www.encodeproject.org/files/ENCFF966AYA/@@download/ENCFF966AYA.bam hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF629FYM bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 36 ENCFF650WVN, ENCFF807MUK 589401942 ENCODE Processing Pipeline 4056ccd41b47e0f520fe40cf2cfaebe2 https://www.encodeproject.org/files/ENCFF629FYM/@@download/ENCFF629FYM.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF746UGW bam alignments ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 36 ENCFF372AND, ENCFF807MUK 621778990 ENCODE Processing Pipeline c3ce5d6fc495c79b7e45c541ec88d5d5 https://www.encodeproject.org/files/ENCFF746UGW/@@download/ENCFF746UGW.bam hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF849WYX bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 36 ENCFF000PWA, ENCFF807MUK 612766004 ENCODE Processing Pipeline 2026e3ba49cd1962705f2941d8b9f7a5 https://www.encodeproject.org/files/ENCFF849WYX/@@download/ENCFF849WYX.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF747HGM bam alignments ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 36 ENCFF000PWC, ENCFF807MUK 914786444 ENCODE Processing Pipeline 65d015a573436527cfbb02c83685506f https://www.encodeproject.org/files/ENCFF747HGM/@@download/ENCFF747HGM.bam hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF123STP bam alignments ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 100 ENCFF262JDY, ENCFF807MUK, ENCFF829YZO 4250583615 ENCODE Processing Pipeline 85f8759a68b151f72e3029d768be62c7 https://www.encodeproject.org/files/ENCFF123STP/@@download/ENCFF123STP.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811AZL bam alignments ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 100 ENCFF042CMS, ENCFF500XDC, ENCFF807MUK 3790131504 ENCODE Processing Pipeline c443f0de3cab290bfd019a907bf9343a https://www.encodeproject.org/files/ENCFF811AZL/@@download/ENCFF811AZL.bam hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption