INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF2-SRR5197105.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF2-SRR5197105/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.2934961319 s
Creating peak regions... Creating peak regions took 62.1965610981 s
Estimating background... Estimating background took 22.0320250988 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.65471696854 s
Creating peak regions... Creating peak regions took 30.3918249607 s
Estimating background... Estimating background took 9.68012905121 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.72634601593 s
Creating peak regions... Creating peak regions took 34.5390160084 s
Estimating background... Estimating background took 9.32312297821 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF2-SRR5197105.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF2-SRR5197105/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.34781384468 s
Creating peak regions... Creating peak regions took 72.5924620628 s
Estimating background... Estimating background took 28.2067391872 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.22401690483 s
Creating peak regions... Creating peak regions took 40.8804850578 s
Estimating background... Estimating background took 13.0522041321 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.22632694244 s
Creating peak regions... Creating peak regions took 41.9844219685 s
Estimating background... Estimating background took 11.6037240028 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.17425489426 s
Creating peak regions... Creating peak regions took 41.5194849968 s
Estimating background... Estimating background took 12.8740751743 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.84124302864 s
Creating peak regions... Creating peak regions took 36.176582098 s
Estimating background... Estimating background took 11.7150101662 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.60528278351 s
Creating peak regions... Creating peak regions took 32.2399690151 s
Estimating background... Estimating background took 8.40455985069 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.32068991661 s
Creating peak regions... Creating peak regions took 29.4600958824 s
Estimating background... Estimating background took 9.06075406075 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.44990086555 s
Creating peak regions... Creating peak regions took 26.4376709461 s
Estimating background... Estimating background took 8.78213691711 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.64919495583 s
Creating peak regions... Creating peak regions took 26.3171319962 s
Estimating background... Estimating background took 10.8197548389 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.10906410217 s
Creating peak regions... Creating peak regions took 23.2599010468 s
Estimating background... Estimating background took 6.04943299294 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.33639097214 s
Creating peak regions... Creating peak regions took 18.3363089561 s
Estimating background... Estimating background took 8.52655315399 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.52977609634 s
Creating peak regions... Creating peak regions took 69.8610339165 s
Estimating background... Estimating background took 20.0979208946 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.1038351059 s
Creating peak regions... Creating peak regions took 20.3396799564 s
Estimating background... Estimating background took 6.99876618385 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.591481924057 s
Creating peak regions... Creating peak regions took 14.4375498295 s
Estimating background... Estimating background took 4.26839900017 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.57247710228 s
Creating peak regions... Creating peak regions took 15.6879320145 s
Estimating background... Estimating background took 7.25788497925 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.83330607414 s
Creating peak regions... Creating peak regions took 59.8961360455 s
Estimating background... Estimating background took 15.2708220482 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.56633687019 s
Creating peak regions... Creating peak regions took 55.0513660908 s
Estimating background... Estimating background took 12.786441803 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.15662002563 s
Creating peak regions... Creating peak regions took 52.4021930695 s
Estimating background... Estimating background took 13.9677350521 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.662733078 s
Creating peak regions... Creating peak regions took 53.6414759159 s
Estimating background... Estimating background took 16.9377970695 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.78505516052 s
Creating peak regions... Creating peak regions took 47.9436209202 s
Estimating background... Estimating background took 14.6403439045 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.05211591721 s
Creating peak regions... Creating peak regions took 42.7026259899 s
Estimating background... Estimating background took 11.7922701836 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.05077385902 s
Creating peak regions... Creating peak regions took 41.5320739746 s
Estimating background... Estimating background took 11.7961838245 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0853550434113 s
Creating peak regions... Creating peak regions took 0.181369781494 s
Estimating background... Estimating background took 0.548942089081 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.62430500984 s
Creating peak regions... Creating peak regions took 45.6363880634 s
Estimating background... Estimating background took 15.1370370388 s


Processing ZNF2-SRR5197105.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.111207962036 s
Creating peak regions... Creating peak regions took 14.9973428249 s
Estimating background... Estimating background took 0.678006887436 s