INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF17-SRR5197067.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF17-SRR5197067/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.5078318119 s
Creating peak regions... Creating peak regions took 74.6258730888 s
Estimating background... Estimating background took 31.1410031319 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.66934800148 s
Creating peak regions... Creating peak regions took 39.242702961 s
Estimating background... Estimating background took 12.5898890495 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.63279891014 s
Creating peak regions... Creating peak regions took 38.9722249508 s
Estimating background... Estimating background took 12.4270260334 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF17-SRR5197067.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF17-SRR5197067/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.72966384888 s
Creating peak regions... Creating peak regions took 68.0451569557 s
Estimating background... Estimating background took 28.5008401871 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.31285619736 s
Creating peak regions... Creating peak regions took 35.677726984 s
Estimating background... Estimating background took 11.8816869259 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.21790790558 s
Creating peak regions... Creating peak regions took 35.4736571312 s
Estimating background... Estimating background took 11.3357799053 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.37763404846 s
Creating peak regions... Creating peak regions took 38.2582330704 s
Estimating background... Estimating background took 12.6108989716 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.36950397491 s
Creating peak regions... Creating peak regions took 31.2106559277 s
Estimating background... Estimating background took 16.1153891087 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.63892102242 s
Creating peak regions... Creating peak regions took 30.4491930008 s
Estimating background... Estimating background took 8.28958511353 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.67325496674 s
Creating peak regions... Creating peak regions took 26.7216279507 s
Estimating background... Estimating background took 8.55380702019 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.50537395477 s
Creating peak regions... Creating peak regions took 24.9668848515 s
Estimating background... Estimating background took 6.99753594398 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.81979489326 s
Creating peak regions... Creating peak regions took 22.2423360348 s
Estimating background... Estimating background took 8.38223695755 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.30125498772 s
Creating peak regions... Creating peak regions took 21.269053936 s
Estimating background... Estimating background took 6.82677721977 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.13835096359 s
Creating peak regions... Creating peak regions took 15.1489510536 s
Estimating background... Estimating background took 5.47699093819 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.19978189468 s
Creating peak regions... Creating peak regions took 69.1023960114 s
Estimating background... Estimating background took 20.1882431507 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.16063094139 s
Creating peak regions... Creating peak regions took 18.2625660896 s
Estimating background... Estimating background took 6.29323792458 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.78006196022 s
Creating peak regions... Creating peak regions took 13.0604720116 s
Estimating background... Estimating background took 4.09296989441 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.899676084518 s
Creating peak regions... Creating peak regions took 14.2507009506 s
Estimating background... Estimating background took 5.13256597519 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.40844011307 s
Creating peak regions... Creating peak regions took 55.7636480331 s
Estimating background... Estimating background took 16.7576231956 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.09879398346 s
Creating peak regions... Creating peak regions took 50.4243710041 s
Estimating background... Estimating background took 14.7314069271 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.29142093658 s
Creating peak regions... Creating peak regions took 46.1562039852 s
Estimating background... Estimating background took 15.9246840477 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.42412400246 s
Creating peak regions... Creating peak regions took 49.9116020203 s
Estimating background... Estimating background took 18.7548801899 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.05533885956 s
Creating peak regions... Creating peak regions took 43.015392065 s
Estimating background... Estimating background took 15.6120650768 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.44470310211 s
Creating peak regions... Creating peak regions took 38.908561945 s
Estimating background... Estimating background took 11.804265976 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.32575416565 s
Creating peak regions... Creating peak regions took 36.744161129 s
Estimating background... Estimating background took 10.5037961006 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0974009037018 s
Creating peak regions... Creating peak regions took 0.172365903854 s
Estimating background... Estimating background took 0.786750078201 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.34300088882 s
Creating peak regions... Creating peak regions took 45.3945519924 s
Estimating background... Estimating background took 17.4805340767 s


Processing ZNF17-SRR5197067.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.214501142502 s
Creating peak regions... Creating peak regions took 14.6622619629 s
Estimating background... Estimating background took 0.571084022522 s