INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF12-SRR5197057.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF12-SRR5197057/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.13975286484 s
Creating peak regions... Creating peak regions took 75.3513660431 s
Estimating background... Estimating background took 27.4564709663 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.34570503235 s
Creating peak regions... Creating peak regions took 39.2933540344 s
Estimating background... Estimating background took 11.898968935 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.29515004158 s
Creating peak regions... Creating peak regions took 41.3978879452 s
Estimating background... Estimating background took 11.6858780384 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF12-SRR5197057.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF12-SRR5197057/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.18543195724 s
Creating peak regions... Creating peak regions took 66.1880800724 s
Estimating background... Estimating background took 24.9408438206 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.95899319649 s
Creating peak regions... Creating peak regions took 34.9159610271 s
Estimating background... Estimating background took 10.5665540695 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.04592895508 s
Creating peak regions... Creating peak regions took 37.2202091217 s
Estimating background... Estimating background took 10.6207408905 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.17934703827 s
Creating peak regions... Creating peak regions took 36.9182670116 s
Estimating background... Estimating background took 11.5180299282 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.69827914238 s
Creating peak regions... Creating peak regions took 29.3744900227 s
Estimating background... Estimating background took 9.82464504242 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.41883301735 s
Creating peak regions... Creating peak regions took 27.3736448288 s
Estimating background... Estimating background took 7.29110002518 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.3528881073 s
Creating peak regions... Creating peak regions took 27.1774060726 s
Estimating background... Estimating background took 8.1665251255 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.36629390717 s
Creating peak regions... Creating peak regions took 22.963613987 s
Estimating background... Estimating background took 8.20036792755 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.56132483482 s
Creating peak regions... Creating peak regions took 22.1842660904 s
Estimating background... Estimating background took 10.2953038216 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.10449409485 s
Creating peak regions... Creating peak regions took 21.7383031845 s
Estimating background... Estimating background took 5.62021017075 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.14173102379 s
Creating peak regions... Creating peak regions took 16.4406030178 s
Estimating background... Estimating background took 6.96663999557 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.22947192192 s
Creating peak regions... Creating peak regions took 62.2607858181 s
Estimating background... Estimating background took 17.3790051937 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.1088039875 s
Creating peak regions... Creating peak regions took 17.338947773 s
Estimating background... Estimating background took 6.59735488892 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.653018951416 s
Creating peak regions... Creating peak regions took 11.4214100838 s
Estimating background... Estimating background took 3.99287700653 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.834253072739 s
Creating peak regions... Creating peak regions took 13.9819889069 s
Estimating background... Estimating background took 5.9937081337 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.56633901596 s
Creating peak regions... Creating peak regions took 50.9176239967 s
Estimating background... Estimating background took 14.2203991413 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.45205307007 s
Creating peak regions... Creating peak regions took 48.0275859833 s
Estimating background... Estimating background took 11.147300005 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.43718099594 s
Creating peak regions... Creating peak regions took 44.8790631294 s
Estimating background... Estimating background took 12.9302699566 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.73428106308 s
Creating peak regions... Creating peak regions took 47.190007925 s
Estimating background... Estimating background took 14.6584849358 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.48412203789 s
Creating peak regions... Creating peak regions took 41.1535878181 s
Estimating background... Estimating background took 13.6521978378 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.01112914085 s
Creating peak regions... Creating peak regions took 37.2805290222 s
Estimating background... Estimating background took 9.46018791199 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.72078490257 s
Creating peak regions... Creating peak regions took 34.8847429752 s
Estimating background... Estimating background took 10.1413989067 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0808820724487 s
Creating peak regions... Creating peak regions took 0.133782863617 s
Estimating background... Estimating background took 0.551237106323 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.51964402199 s
Creating peak regions... Creating peak regions took 43.0474488735 s
Estimating background... Estimating background took 12.6382410526 s


Processing ZNF12-SRR5197057.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0999269485474 s
Creating peak regions... Creating peak regions took 14.0262589455 s
Estimating background... Estimating background took 0.430417060852 s