INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP69B-SRR5197041.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP69B-SRR5197041/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 7.42286992073 s Creating peak regions... Creating peak regions took 71.5052680969 s Estimating background... Estimating background took 58.6755330563 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.09885597229 s Creating peak regions... Creating peak regions took 38.0326530933 s Estimating background... Estimating background took 23.9515140057 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.45729899406 s Creating peak regions... Creating peak regions took 37.0215461254 s Estimating background... Estimating background took 23.5535309315 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP69B-SRR5197041.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP69B-SRR5197041/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 7.26764202118 s Creating peak regions... Creating peak regions took 67.9025659561 s Estimating background... Estimating background took 55.9434378147 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.3565030098 s Creating peak regions... Creating peak regions took 36.4534630775 s Estimating background... Estimating background took 22.6601119041 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.33416295052 s Creating peak regions... Creating peak regions took 35.8476409912 s Estimating background... Estimating background took 22.7373640537 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.30607795715 s Creating peak regions... Creating peak regions took 35.9625442028 s Estimating background... Estimating background took 24.468211174 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.85885500908 s Creating peak regions... Creating peak regions took 30.8781681061 s Estimating background... Estimating background took 22.8690021038 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.27640199661 s Creating peak regions... Creating peak regions took 28.4666700363 s Estimating background... Estimating background took 15.1551508904 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.62159800529 s Creating peak regions... Creating peak regions took 28.7400350571 s Estimating background... Estimating background took 18.7861690521 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.27363991737 s Creating peak regions... Creating peak regions took 24.1876080036 s Estimating background... Estimating background took 16.6294150352 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.01587200165 s Creating peak regions... Creating peak regions took 23.3682088852 s Estimating background... Estimating background took 20.7535319328 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.77633786201 s Creating peak regions... Creating peak regions took 21.1992309093 s Estimating background... Estimating background took 11.563740015 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.07123589516 s Creating peak regions... Creating peak regions took 16.3780939579 s Estimating background... Estimating background took 15.2987689972 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.37237000465 s Creating peak regions... Creating peak regions took 65.0124559402 s Estimating background... Estimating background took 37.8619611263 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.90074300766 s Creating peak regions... Creating peak regions took 18.7789161205 s Estimating background... Estimating background took 13.7179529667 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.03650808334 s Creating peak regions... Creating peak regions took 12.4286079407 s Estimating background... Estimating background took 6.99642682076 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.55994701385 s Creating peak regions... Creating peak regions took 15.2856550217 s Estimating background... Estimating background took 13.6527631283 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.57505202293 s Creating peak regions... Creating peak regions took 53.0349349976 s Estimating background... Estimating background took 30.4405269623 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.85398507118 s Creating peak regions... Creating peak regions took 49.6388089657 s Estimating background... Estimating background took 22.2225160599 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.41408109665 s Creating peak regions... Creating peak regions took 47.9812428951 s Estimating background... Estimating background took 28.4716980457 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.49023580551 s Creating peak regions... Creating peak regions took 46.984801054 s Estimating background... Estimating background took 32.9729881287 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.29173398018 s Creating peak regions... Creating peak regions took 44.3236880302 s Estimating background... Estimating background took 30.4350678921 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.71327400208 s Creating peak regions... Creating peak regions took 39.4473209381 s Estimating background... Estimating background took 20.8867709637 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.02445912361 s Creating peak regions... Creating peak regions took 37.1854040623 s Estimating background... Estimating background took 21.7250499725 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.117453098297 s Creating peak regions... Creating peak regions took 0.197901964188 s Estimating background... Estimating background took 0.677787065506 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 4.64694690704 s Creating peak regions... Creating peak regions took 45.7230961323 s Estimating background... Estimating background took 32.2201991081 s Processing ZFP69B-SRR5197041.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.161329984665 s Creating peak regions... Creating peak regions took 15.9805121422 s Estimating background... Estimating background took 0.645906925201 s