INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP57-SRR5197039.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP57-SRR5197039/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.07404088974 s
Creating peak regions... Creating peak regions took 69.9152388573 s
Estimating background... Estimating background took 35.1402800083 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.85467386246 s
Creating peak regions... Creating peak regions took 35.0991899967 s
Estimating background... Estimating background took 15.2535500526 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.6060128212 s
Creating peak regions... Creating peak regions took 36.2906000614 s
Estimating background... Estimating background took 14.2982299328 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP57-SRR5197039.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP57-SRR5197039/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.72933697701 s
Creating peak regions... Creating peak regions took 66.0256991386 s
Estimating background... Estimating background took 34.6082041264 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.73928117752 s
Creating peak regions... Creating peak regions took 35.1723270416 s
Estimating background... Estimating background took 14.8595499992 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.68794608116 s
Creating peak regions... Creating peak regions took 35.2605879307 s
Estimating background... Estimating background took 14.1131029129 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.94059896469 s
Creating peak regions... Creating peak regions took 34.6883058548 s
Estimating background... Estimating background took 14.7414200306 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.36990499496 s
Creating peak regions... Creating peak regions took 32.1342339516 s
Estimating background... Estimating background took 17.9398069382 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.98169183731 s
Creating peak regions... Creating peak regions took 27.48001194 s
Estimating background... Estimating background took 9.71972513199 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.61227488518 s
Creating peak regions... Creating peak regions took 27.5596580505 s
Estimating background... Estimating background took 10.477907896 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.85371494293 s
Creating peak regions... Creating peak regions took 24.6783418655 s
Estimating background... Estimating background took 10.0556929111 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.79934287071 s
Creating peak regions... Creating peak regions took 23.6942417622 s
Estimating background... Estimating background took 11.3610589504 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.50975680351 s
Creating peak regions... Creating peak regions took 20.8148369789 s
Estimating background... Estimating background took 8.48464393616 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.29679203033 s
Creating peak regions... Creating peak regions took 15.447439909 s
Estimating background... Estimating background took 8.00970196724 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.64381599426 s
Creating peak regions... Creating peak regions took 60.3810739517 s
Estimating background... Estimating background took 25.2804219723 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.22206807137 s
Creating peak regions... Creating peak regions took 17.7927730083 s
Estimating background... Estimating background took 7.4537050724 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.912276029587 s
Creating peak regions... Creating peak regions took 12.2730197906 s
Estimating background... Estimating background took 5.18314599991 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.02231001854 s
Creating peak regions... Creating peak regions took 13.8802380562 s
Estimating background... Estimating background took 6.97813916206 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.64137887955 s
Creating peak regions... Creating peak regions took 51.6821100712 s
Estimating background... Estimating background took 19.7114598751 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.16872501373 s
Creating peak regions... Creating peak regions took 52.3188199997 s
Estimating background... Estimating background took 15.4650170803 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.70807600021 s
Creating peak regions... Creating peak regions took 51.0134530067 s
Estimating background... Estimating background took 19.9963979721 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.91066908836 s
Creating peak regions... Creating peak regions took 45.8509280682 s
Estimating background... Estimating background took 22.386398077 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.25787496567 s
Creating peak regions... Creating peak regions took 42.6915400028 s
Estimating background... Estimating background took 19.4520430565 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.08531904221 s
Creating peak regions... Creating peak regions took 38.3538551331 s
Estimating background... Estimating background took 12.8295810223 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.29101514816 s
Creating peak regions... Creating peak regions took 37.9738640785 s
Estimating background... Estimating background took 13.5712609291 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0822920799255 s
Creating peak regions... Creating peak regions took 0.1707508564 s
Estimating background... Estimating background took 0.648641824722 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.48873281479 s
Creating peak regions... Creating peak regions took 42.0766720772 s
Estimating background... Estimating background took 20.2934799194 s


Processing ZFP57-SRR5197039.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.219095945358 s
Creating peak regions... Creating peak regions took 13.6405630112 s
Estimating background... Estimating background took 0.77507686615 s