INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP14-SRR5197037.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP14-SRR5197037/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.5679898262 s
Creating peak regions... Creating peak regions took 64.8199408054 s
Estimating background... Estimating background took 20.3861100674 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.54512786865 s
Creating peak regions... Creating peak regions took 33.1443319321 s
Estimating background... Estimating background took 8.71653699875 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.56959199905 s
Creating peak regions... Creating peak regions took 35.8553800583 s
Estimating background... Estimating background took 8.94451808929 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP14-SRR5197037.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP14-SRR5197037/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.07863402367 s
Creating peak regions... Creating peak regions took 65.1210689545 s
Estimating background... Estimating background took 20.9183328152 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.39346814156 s
Creating peak regions... Creating peak regions took 33.0547540188 s
Estimating background... Estimating background took 8.6575949192 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.46237015724 s
Creating peak regions... Creating peak regions took 35.5415868759 s
Estimating background... Estimating background took 8.84282803535 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.59644007683 s
Creating peak regions... Creating peak regions took 35.4026770592 s
Estimating background... Estimating background took 9.32620310783 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.32428407669 s
Creating peak regions... Creating peak regions took 29.8199288845 s
Estimating background... Estimating background took 8.8013689518 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.10226297379 s
Creating peak regions... Creating peak regions took 27.8109200001 s
Estimating background... Estimating background took 6.51157402992 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.05857396126 s
Creating peak regions... Creating peak regions took 26.3167598248 s
Estimating background... Estimating background took 7.35787081718 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.19471597672 s
Creating peak regions... Creating peak regions took 22.2971899509 s
Estimating background... Estimating background took 7.01733708382 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.43235611916 s
Creating peak regions... Creating peak regions took 22.6401929855 s
Estimating background... Estimating background took 9.45954108238 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.766590118408 s
Creating peak regions... Creating peak regions took 20.8379631042 s
Estimating background... Estimating background took 4.7341029644 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.83494591713 s
Creating peak regions... Creating peak regions took 15.6612038612 s
Estimating background... Estimating background took 5.16207695007 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.63869094849 s
Creating peak regions... Creating peak regions took 63.5304889679 s
Estimating background... Estimating background took 14.0110118389 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.856671094894 s
Creating peak regions... Creating peak regions took 16.7247698307 s
Estimating background... Estimating background took 5.88572502136 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.443682909012 s
Creating peak regions... Creating peak regions took 12.2198588848 s
Estimating background... Estimating background took 3.13244485855 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.816656112671 s
Creating peak regions... Creating peak regions took 13.557970047 s
Estimating background... Estimating background took 5.89452290535 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.26621603966 s
Creating peak regions... Creating peak regions took 49.4638888836 s
Estimating background... Estimating background took 12.3763279915 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.79778409004 s
Creating peak regions... Creating peak regions took 49.5406739712 s
Estimating background... Estimating background took 9.29448103905 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.88839411736 s
Creating peak regions... Creating peak regions took 44.139398098 s
Estimating background... Estimating background took 10.9660968781 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.14916014671 s
Creating peak regions... Creating peak regions took 45.8846151829 s
Estimating background... Estimating background took 12.0289008617 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.89372014999 s
Creating peak regions... Creating peak regions took 39.8992450237 s
Estimating background... Estimating background took 11.3641932011 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.48583602905 s
Creating peak regions... Creating peak regions took 35.6162779331 s
Estimating background... Estimating background took 8.37684679031 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.4965929985 s
Creating peak regions... Creating peak regions took 33.7113418579 s
Estimating background... Estimating background took 8.25547289848 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0759160518646 s
Creating peak regions... Creating peak regions took 0.127767086029 s
Estimating background... Estimating background took 0.544593095779 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.86583209038 s
Creating peak regions... Creating peak regions took 41.6535391808 s
Estimating background... Estimating background took 10.8120517731 s


Processing ZFP14-SRR5197037.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0884821414948 s
Creating peak regions... Creating peak regions took 12.8323478699 s
Estimating background... Estimating background took 0.418354988098 s