INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP1-SRR5197038.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP1-SRR5197038/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.13431787491 s
Creating peak regions... Creating peak regions took 68.0016028881 s
Estimating background... Estimating background took 26.3672411442 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.87786793709 s
Creating peak regions... Creating peak regions took 34.1541659832 s
Estimating background... Estimating background took 10.6201710701 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.91547584534 s
Creating peak regions... Creating peak regions took 36.5083639622 s
Estimating background... Estimating background took 10.6065318584 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP1-SRR5197038.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP1-SRR5197038/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.16926002502 s
Creating peak regions... Creating peak regions took 66.010974884 s
Estimating background... Estimating background took 26.1191549301 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.97822403908 s
Creating peak regions... Creating peak regions took 34.2737548351 s
Estimating background... Estimating background took 10.9297938347 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.84715199471 s
Creating peak regions... Creating peak regions took 37.0829429626 s
Estimating background... Estimating background took 10.6494898796 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.99885702133 s
Creating peak regions... Creating peak regions took 36.1360290051 s
Estimating background... Estimating background took 11.5143170357 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.79979085922 s
Creating peak regions... Creating peak regions took 29.5016009808 s
Estimating background... Estimating background took 12.9535260201 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.43450093269 s
Creating peak regions... Creating peak regions took 26.7541520596 s
Estimating background... Estimating background took 7.48691296577 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.39269304276 s
Creating peak regions... Creating peak regions took 27.0744588375 s
Estimating background... Estimating background took 8.44486999512 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.26691579819 s
Creating peak regions... Creating peak regions took 23.9656889439 s
Estimating background... Estimating background took 7.27391719818 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.64444613457 s
Creating peak regions... Creating peak regions took 21.2865240574 s
Estimating background... Estimating background took 8.55499601364 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.125685215 s
Creating peak regions... Creating peak regions took 20.1400208473 s
Estimating background... Estimating background took 6.25395917892 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.988304138184 s
Creating peak regions... Creating peak regions took 16.0490760803 s
Estimating background... Estimating background took 5.4337720871 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.23564982414 s
Creating peak regions... Creating peak regions took 65.1215679646 s
Estimating background... Estimating background took 18.0515079498 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.07841396332 s
Creating peak regions... Creating peak regions took 17.2709569931 s
Estimating background... Estimating background took 6.09702205658 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.619652986526 s
Creating peak regions... Creating peak regions took 12.6436970234 s
Estimating background... Estimating background took 3.92126607895 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.787638902664 s
Creating peak regions... Creating peak regions took 13.6481890678 s
Estimating background... Estimating background took 5.43939495087 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.03515601158 s
Creating peak regions... Creating peak regions took 53.6906559467 s
Estimating background... Estimating background took 14.4419810772 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.49928808212 s
Creating peak regions... Creating peak regions took 47.4344689846 s
Estimating background... Estimating background took 11.8154909611 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.77938985825 s
Creating peak regions... Creating peak regions took 49.0980291367 s
Estimating background... Estimating background took 14.2827780247 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.20855903625 s
Creating peak regions... Creating peak regions took 44.3883621693 s
Estimating background... Estimating background took 15.725301981 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.49117708206 s
Creating peak regions... Creating peak regions took 44.0766179562 s
Estimating background... Estimating background took 13.6696579456 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.08488583565 s
Creating peak regions... Creating peak regions took 35.3199520111 s
Estimating background... Estimating background took 10.5566768646 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.0809841156 s
Creating peak regions... Creating peak regions took 37.0063500404 s
Estimating background... Estimating background took 10.410574913 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0954039096832 s
Creating peak regions... Creating peak regions took 0.163177013397 s
Estimating background... Estimating background took 0.658538103104 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.58287405968 s
Creating peak regions... Creating peak regions took 43.2864530087 s
Estimating background... Estimating background took 15.2366499901 s


Processing ZFP1-SRR5197038.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.100062131882 s
Creating peak regions... Creating peak regions took 15.2131299973 s
Estimating background... Estimating background took 0.567584037781 s