ENCFF720UBT bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF281SDB, ENCFF466QHR 6492687 ENCODE Processing Pipeline 8a2ad4ae6798b44d209bbe594a30b80e https://www.encodeproject.org/files/ENCFF720UBT/@@download/ENCFF720UBT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF940NRT bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7019893 ENCODE Processing Pipeline 5936d3a4c380f4b13628191fba4e233b https://www.encodeproject.org/files/ENCFF940NRT/@@download/ENCFF940NRT.bed.gz hg19 released mild to moderate bottlenecking ENCFF731JDO bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7095383 ENCODE Processing Pipeline c35cf7cbae9e72bc00e9688c8705e0b5 https://www.encodeproject.org/files/ENCFF731JDO/@@download/ENCFF731JDO.bed.gz hg19 archived mild to moderate bottlenecking ENCFF270JUJ bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF417XBC 6818984 ENCODE Processing Pipeline 3b84347ef6235c67c6f755c8595d890c https://www.encodeproject.org/files/ENCFF270JUJ/@@download/ENCFF270JUJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF496DRF bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 2 ENCFF122RZR, ENCFF749SPN 6600546 ENCODE Processing Pipeline e10b945072947412a4967a04e7cda307 https://www.encodeproject.org/files/ENCFF496DRF/@@download/ENCFF496DRF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF842STK bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 5744360 ENCODE Processing Pipeline dd0c6deb8ecd5d8954ff908d0cda5c4f https://www.encodeproject.org/files/ENCFF842STK/@@download/ENCFF842STK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF698JWD bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF597IWX 6699517 ENCODE Processing Pipeline 6fa2e25ecb6aa890d6760da657eef1fa https://www.encodeproject.org/files/ENCFF698JWD/@@download/ENCFF698JWD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF078PIE bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6311743 ENCODE Processing Pipeline ee37f60c860060fa2eddc8e9ed804e77 https://www.encodeproject.org/files/ENCFF078PIE/@@download/ENCFF078PIE.bed.gz hg19 released antibody characterized with exemption ENCFF730HVB bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6464073 ENCODE Processing Pipeline abd3110af11b2e8ce9790aa37353990d https://www.encodeproject.org/files/ENCFF730HVB/@@download/ENCFF730HVB.bed.gz hg19 archived antibody characterized with exemption ENCFF575RVG bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 2 ENCFF143UTJ, ENCFF930DZH 5377635 ENCODE Processing Pipeline 5a7b9d48c880acef56539f484bac771f https://www.encodeproject.org/files/ENCFF575RVG/@@download/ENCFF575RVG.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF777YSR bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 2 ENCFF189PKR, ENCFF197TMV 5399571 ENCODE Processing Pipeline 2648b73e01a12bf1d770eab481d3b4cd https://www.encodeproject.org/files/ENCFF777YSR/@@download/ENCFF777YSR.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF189YFO bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 2 ENCFF207ILO, ENCFF834TUP 7142686 ENCODE Processing Pipeline 5fba234db01600332db1a33dc36a687d https://www.encodeproject.org/files/ENCFF189YFO/@@download/ENCFF189YFO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF670KBE bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 6408804 ENCODE Processing Pipeline e30b7c45b6616618875246c074065c8f https://www.encodeproject.org/files/ENCFF670KBE/@@download/ENCFF670KBE.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF337ISL bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 6500158 ENCODE Processing Pipeline ea9c81a1b970ba86b392f3154ebd0115 https://www.encodeproject.org/files/ENCFF337ISL/@@download/ENCFF337ISL.bed.gz hg19 released antibody characterized with exemption ENCFF705EEN bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF296PIX, ENCFF927ZZQ 6065843 ENCODE Processing Pipeline 7aa7bb6b33401d221d382afeac70d737 https://www.encodeproject.org/files/ENCFF705EEN/@@download/ENCFF705EEN.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF993MOQ bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 2 ENCFF387AIX, ENCFF904PIO 6311225 ENCODE Processing Pipeline 11f6ed6c2dc07141fabb2e9e59bf1606 https://www.encodeproject.org/files/ENCFF993MOQ/@@download/ENCFF993MOQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF332OXV bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 2 ENCFF231YLU, ENCFF528KWW 5157282 ENCODE Processing Pipeline 2cfa4c617c8654ce52b9d9bea96e6149 https://www.encodeproject.org/files/ENCFF332OXV/@@download/ENCFF332OXV.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF842XXA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 6676264 ENCODE Processing Pipeline f94f0bcb0b973bf3126547a8d5a59a2e https://www.encodeproject.org/files/ENCFF842XXA/@@download/ENCFF842XXA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF646ILI bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF081SMO 6364084 ENCODE Processing Pipeline 2b4099828aa88a5b17f6459ebd04cc47 https://www.encodeproject.org/files/ENCFF646ILI/@@download/ENCFF646ILI.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF338NAH bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 6424347 ENCODE Processing Pipeline a0e6904c4853be483cc4109cec75962b https://www.encodeproject.org/files/ENCFF338NAH/@@download/ENCFF338NAH.bed.gz hg19 released low read depth ENCFF790EAG bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 7075209 ENCODE Processing Pipeline 57175cbb3e3b259b17307f4ba23ad295 https://www.encodeproject.org/files/ENCFF790EAG/@@download/ENCFF790EAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF109VMO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF839GLQ 7254397 ENCODE Processing Pipeline 946487180b55d5e1e6a68781d9572952 https://www.encodeproject.org/files/ENCFF109VMO/@@download/ENCFF109VMO.bed.gz hg19 released low read depth ENCFF358UWQ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 5981773 ENCODE Processing Pipeline ca1bc3fdc58e3c336e9dd1a26d572ffe https://www.encodeproject.org/files/ENCFF358UWQ/@@download/ENCFF358UWQ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF721GUV bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 6499363 ENCODE Processing Pipeline bf67c0603423efddd5ece0d9967c5b30 https://www.encodeproject.org/files/ENCFF721GUV/@@download/ENCFF721GUV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF258HYJ bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 2 ENCFF591PYL, ENCFF632XPI 6525547 ENCODE Processing Pipeline 0707452f5158f3676955c29043b9816f https://www.encodeproject.org/files/ENCFF258HYJ/@@download/ENCFF258HYJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF929AWJ bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF471WLV 6341953 ENCODE Processing Pipeline b55cda7b5759eaf429e79fa33aa4ff83 https://www.encodeproject.org/files/ENCFF929AWJ/@@download/ENCFF929AWJ.bed.gz hg19 released ENCFF422XRA bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF330WGJ 6984393 ENCODE Processing Pipeline ca24922c8643afe2720b83cc333e2c6b https://www.encodeproject.org/files/ENCFF422XRA/@@download/ENCFF422XRA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF856NOU bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 2 ENCFF031TWZ, ENCFF203ABR 6831716 ENCODE Processing Pipeline 5345b85afc989a1dbc03593dd173d48c https://www.encodeproject.org/files/ENCFF856NOU/@@download/ENCFF856NOU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF769CZK bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7051051 ENCODE Processing Pipeline 7beb67f9bab7888ff35378531645d6bc https://www.encodeproject.org/files/ENCFF769CZK/@@download/ENCFF769CZK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF291LKR bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF118FTD, ENCFF447KVS, ENCFF823USR 6813767 ENCODE Processing Pipeline 9e82a33c04f76e8a0849ad996675e0cc https://www.encodeproject.org/files/ENCFF291LKR/@@download/ENCFF291LKR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF579PAC bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF532ZHO 6432380 ENCODE Processing Pipeline c792771f1312fb4ff36db6c98b6112c7 https://www.encodeproject.org/files/ENCFF579PAC/@@download/ENCFF579PAC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF768MUF bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF069MNA 7062306 ENCODE Processing Pipeline 134d35f18b36ac678477cb75e19a27a2 https://www.encodeproject.org/files/ENCFF768MUF/@@download/ENCFF768MUF.bed.gz hg19 released ENCFF671LXX bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 2 ENCFF155WNX, ENCFF203ABR 6961663 ENCODE Processing Pipeline 82ac8059f249cf7aa63a380c293bb1d3 https://www.encodeproject.org/files/ENCFF671LXX/@@download/ENCFF671LXX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF680TBL bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 2 ENCFF106GMN, ENCFF453OTB 6263158 ENCODE Processing Pipeline 7a2f2b55d64a26d88a41a20d56e24a23 https://www.encodeproject.org/files/ENCFF680TBL/@@download/ENCFF680TBL.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF094YIY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 6297379 ENCODE Processing Pipeline 642dae0844a0e8d8dd075f82b553215f https://www.encodeproject.org/files/ENCFF094YIY/@@download/ENCFF094YIY.bed.gz hg19 released low read depth ENCFF262RPX bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF621JTB 7072773 ENCODE Processing Pipeline ed8b89f25a858edca351d442df02f59a https://www.encodeproject.org/files/ENCFF262RPX/@@download/ENCFF262RPX.bed.gz hg19 released ENCFF164BVB bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 7021524 ENCODE Processing Pipeline f0b86a668bd367ffc7369bf13feb85fa https://www.encodeproject.org/files/ENCFF164BVB/@@download/ENCFF164BVB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF988PCN bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 2 ENCFF700RMC 6697847 ENCODE Processing Pipeline dd592234b130d5873b6da99f867ba946 https://www.encodeproject.org/files/ENCFF988PCN/@@download/ENCFF988PCN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF086FEW bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 5994594 ENCODE Processing Pipeline 1a05c82267f19e88a3885da5e35280e9 https://www.encodeproject.org/files/ENCFF086FEW/@@download/ENCFF086FEW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF550GTF bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF658KLO, ENCFF834TUP 7036947 ENCODE Processing Pipeline 8cd478c9e0feffc9ef67b0abe72cf734 https://www.encodeproject.org/files/ENCFF550GTF/@@download/ENCFF550GTF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF869TGI bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 2 ENCFF373VCV, ENCFF936MBZ 5921029 ENCODE Processing Pipeline 5368257bee17f7e891c75689b2cf46b8 https://www.encodeproject.org/files/ENCFF869TGI/@@download/ENCFF869TGI.bed.gz hg19 released missing genetic modification characterization ENCFF906WAQ bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF232RDZ 4866259 ENCODE Processing Pipeline 08d4a0372abef1262df64685abf4d357 https://www.encodeproject.org/files/ENCFF906WAQ/@@download/ENCFF906WAQ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF121LDE bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 2 ENCFF201IJO, ENCFF592WAL 7399387 ENCODE Processing Pipeline 9592a949848414b2593e1a787435abe9 https://www.encodeproject.org/files/ENCFF121LDE/@@download/ENCFF121LDE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF500GHH bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 6986623 ENCODE Processing Pipeline c85d20f14641924408142531cfafdd20 https://www.encodeproject.org/files/ENCFF500GHH/@@download/ENCFF500GHH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF050TDD bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF720PEL 6579727 ENCODE Processing Pipeline ef27ea44e3d30e879a25641255d79101 https://www.encodeproject.org/files/ENCFF050TDD/@@download/ENCFF050TDD.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF515FMR bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 2 ENCFF429AJS, ENCFF592WAL, ENCFF901CND 7226284 ENCODE Processing Pipeline bf3da0bc8c3f37d49ce335c43b3ae03f https://www.encodeproject.org/files/ENCFF515FMR/@@download/ENCFF515FMR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF333ULN bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF689KTQ 7069411 ENCODE Processing Pipeline 038820ec11df6d6781de8da33e8ea384 https://www.encodeproject.org/files/ENCFF333ULN/@@download/ENCFF333ULN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF174SPG bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 2147547 ENCODE Processing Pipeline 590be9160b549591f93bb5004c57222c https://www.encodeproject.org/files/ENCFF174SPG/@@download/ENCFF174SPG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF628KQC bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 2 ENCFF131GPA, ENCFF925QJE 2201515 ENCODE Processing Pipeline 619c4a9e07b8a8a8602fe67b799f4a49 https://www.encodeproject.org/files/ENCFF628KQC/@@download/ENCFF628KQC.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF325TSC bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF641CEP, ENCFF709QNC 2240256 ENCODE Processing Pipeline d9b247dda84ccbccfbe1aa818d4405da https://www.encodeproject.org/files/ENCFF325TSC/@@download/ENCFF325TSC.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF299WDT bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 2 ENCFF581ZJL, ENCFF787QAB 7053427 ENCODE Processing Pipeline f2d0976e6d84a7e40f3e8275aa373a62 https://www.encodeproject.org/files/ENCFF299WDT/@@download/ENCFF299WDT.bed.gz hg19 released mild to moderate bottlenecking ENCFF292SNP bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 7252193 ENCODE Processing Pipeline e75f3e53f1fb259d8bc04167166d255b https://www.encodeproject.org/files/ENCFF292SNP/@@download/ENCFF292SNP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF904YUH bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 6830870 ENCODE Processing Pipeline 6d5890f88e3ef7e3c6dc6be88c11c67e https://www.encodeproject.org/files/ENCFF904YUH/@@download/ENCFF904YUH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF074NKQ bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 6763727 ENCODE Processing Pipeline 4fcc50d833fbd8658c629457a34785d8 https://www.encodeproject.org/files/ENCFF074NKQ/@@download/ENCFF074NKQ.bed.gz hg19 released missing genetic modification characterization ENCFF320JKZ bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 7163528 ENCODE Processing Pipeline abde4ca054c2bc93c58be11b81372073 https://www.encodeproject.org/files/ENCFF320JKZ/@@download/ENCFF320JKZ.bed.gz hg19 released ENCFF232KWI bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 2 ENCFF044ZGL, ENCFF581ZJL 6647154 ENCODE Processing Pipeline e5d1fa786643f62b7da74009b2bb1f10 https://www.encodeproject.org/files/ENCFF232KWI/@@download/ENCFF232KWI.bed.gz hg19 released ENCFF796SSH bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 2 ENCFF552USH, ENCFF577QBK 6958561 ENCODE Processing Pipeline 8a9b82bc9d86cdea5b34591b1303d131 https://www.encodeproject.org/files/ENCFF796SSH/@@download/ENCFF796SSH.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF229FTN bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF987JXY 5873218 ENCODE Processing Pipeline c90c5cdfc087540d73eebbe76e58e410 https://www.encodeproject.org/files/ENCFF229FTN/@@download/ENCFF229FTN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF079CJA bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF233XVJ, ENCFF321UJV 6422117 ENCODE Processing Pipeline 7462f67a9e73f083935846d663700f1c https://www.encodeproject.org/files/ENCFF079CJA/@@download/ENCFF079CJA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF061SPB bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF321UJV, ENCFF679ZOV 6554758 ENCODE Processing Pipeline 22e0f0e2365c35a539a3b4e0a3c695c2 https://www.encodeproject.org/files/ENCFF061SPB/@@download/ENCFF061SPB.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF030MOS bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF304NXG, ENCFF698VEP, ENCFF994YBV 5455129 ENCODE Processing Pipeline 6797e15bdea39772a8f8ebcda10a7f9c https://www.encodeproject.org/files/ENCFF030MOS/@@download/ENCFF030MOS.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF296FGF bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 2 ENCFF356JMK, ENCFF698VEP, ENCFF994YBV 5653285 ENCODE Processing Pipeline 3764a7b42bc983547974deeed1fa2371 https://www.encodeproject.org/files/ENCFF296FGF/@@download/ENCFF296FGF.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF530EDL bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 2 ENCFF267TAG, ENCFF512JPN 7255330 ENCODE Processing Pipeline 6633f9702b47a79ee6cd79f14b0037b6 https://www.encodeproject.org/files/ENCFF530EDL/@@download/ENCFF530EDL.bed.gz hg19 released missing genetic modification characterization ENCFF892HJT bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 5874459 ENCODE Processing Pipeline f7b54c7101852b2eae0e6453528c8cd5 https://www.encodeproject.org/files/ENCFF892HJT/@@download/ENCFF892HJT.bed.gz hg19 released low read depth, moderate library complexity ENCFF987INA bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF494PPW, ENCFF956QBZ 6056552 ENCODE Processing Pipeline d5f2c0cab1ba29c36378a3240e1be3b6 https://www.encodeproject.org/files/ENCFF987INA/@@download/ENCFF987INA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF263YLX bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 2 ENCFF773JVR, ENCFF956QBZ 6232967 ENCODE Processing Pipeline 42f6213ed26eca9dab6e123818cfbbeb https://www.encodeproject.org/files/ENCFF263YLX/@@download/ENCFF263YLX.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF273ZDS bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 2 ENCFF445QVI, ENCFF748DIW, ENCFF935ZWS 6189524 ENCODE Processing Pipeline 4c1449a60b201cba321fb887fa5900c1 https://www.encodeproject.org/files/ENCFF273ZDS/@@download/ENCFF273ZDS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF525BTB bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF042TMG, ENCFF200LFK, ENCFF321UJV 5933870 ENCODE Processing Pipeline 9fb64c313269a4d08781b473454a6aab https://www.encodeproject.org/files/ENCFF525BTB/@@download/ENCFF525BTB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF150BYS bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP 6089239 ENCODE Processing Pipeline a57b3bdcaa277249137b0364c06f5fe0 https://www.encodeproject.org/files/ENCFF150BYS/@@download/ENCFF150BYS.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF629JUA bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF064YNC, ENCFF449ZKA 5765663 ENCODE Processing Pipeline 9915636e438fd998572c529133ee8315 https://www.encodeproject.org/files/ENCFF629JUA/@@download/ENCFF629JUA.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF533OLJ bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF674SQJ, ENCFF850ZDJ 6215046 ENCODE Processing Pipeline 68dc3be13a3520b559f5ef82686f09cd https://www.encodeproject.org/files/ENCFF533OLJ/@@download/ENCFF533OLJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF060WBX bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF965CQC 6831676 ENCODE Processing Pipeline c5d01810802b20670d1f08bb2293814c https://www.encodeproject.org/files/ENCFF060WBX/@@download/ENCFF060WBX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF260JMM bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 7100744 ENCODE Processing Pipeline 088d643e4c1e293ba708b5d62b327189 https://www.encodeproject.org/files/ENCFF260JMM/@@download/ENCFF260JMM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF427GLG bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF376QZH 6216994 ENCODE Processing Pipeline a071cadd074ce4334e34dc1ae939aa8d https://www.encodeproject.org/files/ENCFF427GLG/@@download/ENCFF427GLG.bed.gz hg19 released ENCFF684BFS bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG 6787867 ENCODE Processing Pipeline 8319f4102b9aedff494905f19ef8f383 https://www.encodeproject.org/files/ENCFF684BFS/@@download/ENCFF684BFS.bed.gz hg19 released borderline replicate concordance ENCFF503OBN bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF214ARE 5755072 ENCODE Processing Pipeline f8794d5e8f772bef1577ef5fbc5d51f8 https://www.encodeproject.org/files/ENCFF503OBN/@@download/ENCFF503OBN.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF997CFJ bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF108FPL, ENCFF289GAC, ENCFF969DYI 6903752 ENCODE Processing Pipeline 67fb6eeedc4b1740e5e61448727e6b0a https://www.encodeproject.org/files/ENCFF997CFJ/@@download/ENCFF997CFJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF303DKR bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 2 ENCFF102OVJ, ENCFF319TDX 6737397 ENCODE Processing Pipeline f3f8b4ff33716b5a73ff5585e6f524b9 https://www.encodeproject.org/files/ENCFF303DKR/@@download/ENCFF303DKR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF232HEV bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF842SKP 6884646 ENCODE Processing Pipeline 4416b7547a5b229856a3940d5b90c0f9 https://www.encodeproject.org/files/ENCFF232HEV/@@download/ENCFF232HEV.bed.gz hg19 released low read depth ENCFF501YCY bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS 4563885 ENCODE Processing Pipeline 1f94db6c1eb1a51247b39e7ce1f0efb8 https://www.encodeproject.org/files/ENCFF501YCY/@@download/ENCFF501YCY.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF381ZGO bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF961GTC 6672164 ENCODE Processing Pipeline 4ebed3309cd75ab37a60b84b13491cbb https://www.encodeproject.org/files/ENCFF381ZGO/@@download/ENCFF381ZGO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF015GGC bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 2 ENCFF447QIZ 5991238 ENCODE Processing Pipeline 5438f4abe78a80eab1b87b8eac428a30 https://www.encodeproject.org/files/ENCFF015GGC/@@download/ENCFF015GGC.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF679NLN bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF328RQW 6527501 ENCODE Processing Pipeline a8b7dd9bb660673db1fa6cf3b7826ce6 https://www.encodeproject.org/files/ENCFF679NLN/@@download/ENCFF679NLN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF733BAD bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF051LWI, ENCFF690CWG 6810880 ENCODE Processing Pipeline 1099a7eba7de19b93fa68046112910e4 https://www.encodeproject.org/files/ENCFF733BAD/@@download/ENCFF733BAD.bed.gz hg19 released low read depth ENCFF044MZF bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF018ELX, ENCFF235CCD 6541951 ENCODE Processing Pipeline 52901ea7efa04a261a8663c35d9b394f https://www.encodeproject.org/files/ENCFF044MZF/@@download/ENCFF044MZF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF312HIY bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF231HAE, ENCFF850IFD 6044308 ENCODE Processing Pipeline ebe12bf0fe74dbbc4732b2be7c5f61ba https://www.encodeproject.org/files/ENCFF312HIY/@@download/ENCFF312HIY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF833GDZ bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF146NJI 6683708 ENCODE Processing Pipeline 40ef3cb0eefd27c5918a40c7d0d9a3fd https://www.encodeproject.org/files/ENCFF833GDZ/@@download/ENCFF833GDZ.bed.gz hg19 released ENCFF755MSZ bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF348RHT, ENCFF654EHF, ENCFF991UTU 6527404 ENCODE Processing Pipeline e09b319f1570533cfd2fd14888b6b00a https://www.encodeproject.org/files/ENCFF755MSZ/@@download/ENCFF755MSZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF309SZA bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 7176855 ENCODE Processing Pipeline 49d352536c4577a2bfc11622141afab3 https://www.encodeproject.org/files/ENCFF309SZA/@@download/ENCFF309SZA.bed.gz hg19 released antibody characterized with exemption ENCFF223YLF bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF450MML, ENCFF877WMR 5991733 ENCODE Processing Pipeline 77fdd9901e99405f2b0f8361c89f4160 https://www.encodeproject.org/files/ENCFF223YLF/@@download/ENCFF223YLF.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF221LMV bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF849SWB 6968495 ENCODE Processing Pipeline 4f52730587772f0e911e79139e031afe https://www.encodeproject.org/files/ENCFF221LMV/@@download/ENCFF221LMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF230UQS bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF446LZB 7020305 ENCODE Processing Pipeline 18561f1925c356adf0aafbf3d0f97ce9 https://www.encodeproject.org/files/ENCFF230UQS/@@download/ENCFF230UQS.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF683XUE bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF226JIO, ENCFF654EHF, ENCFF991UTU 6640502 ENCODE Processing Pipeline a92ccb7ce2085187d5b8fb784cc26d1a https://www.encodeproject.org/files/ENCFF683XUE/@@download/ENCFF683XUE.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF642PNJ bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF805KOB, ENCFF991UTU 6798252 ENCODE Processing Pipeline 26d75710470840306cb32104ceea008c https://www.encodeproject.org/files/ENCFF642PNJ/@@download/ENCFF642PNJ.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF288BMB bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6894601 ENCODE Processing Pipeline 3001eca0f6ac4c5cc4f2cb18927cab12 https://www.encodeproject.org/files/ENCFF288BMB/@@download/ENCFF288BMB.bed.gz hg19 released mild to moderate bottlenecking ENCFF138RWJ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6970449 ENCODE Processing Pipeline afd34a6b4a486fa0b6feb85b2992031d https://www.encodeproject.org/files/ENCFF138RWJ/@@download/ENCFF138RWJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF724ZSR bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF739CZU 6247130 ENCODE Processing Pipeline 6c74b521dba8fe462b798f1c39c88d80 https://www.encodeproject.org/files/ENCFF724ZSR/@@download/ENCFF724ZSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF021DHZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 7016934 ENCODE Processing Pipeline 2b207983b554dccb298e6a982558fbca https://www.encodeproject.org/files/ENCFF021DHZ/@@download/ENCFF021DHZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF675VGK bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 2 ENCFF282YII, ENCFF834TUP 6846730 ENCODE Processing Pipeline 8d55e7ff85dcc1b6539585c43df576c4 https://www.encodeproject.org/files/ENCFF675VGK/@@download/ENCFF675VGK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF957ZSV bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF093OXI, ENCFF571VVW, ENCFF935JGC 7162873 ENCODE Processing Pipeline fccf32e633236ef2f1eadcd05e030145 https://www.encodeproject.org/files/ENCFF957ZSV/@@download/ENCFF957ZSV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF628SZN bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF494NAS, ENCFF529BVI, ENCFF772FBN 7017958 ENCODE Processing Pipeline 40baa9d3ad2a2333d6635f9b35981915 https://www.encodeproject.org/files/ENCFF628SZN/@@download/ENCFF628SZN.bed.gz hg19 released mild to moderate bottlenecking ENCFF771RJQ bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF371NEP 6506103 ENCODE Processing Pipeline 58b29f71002828a507239a8a02689344 https://www.encodeproject.org/files/ENCFF771RJQ/@@download/ENCFF771RJQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF216JOG bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP 7257353 ENCODE Processing Pipeline 81289654f2e34566512ad9f7d1d7c675 https://www.encodeproject.org/files/ENCFF216JOG/@@download/ENCFF216JOG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF142WNN bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 2 ENCFF876ZSM, ENCFF994LQW 6253188 ENCODE Processing Pipeline 4f226b6cef40ff1c97d42b6fe5b8cfdf https://www.encodeproject.org/files/ENCFF142WNN/@@download/ENCFF142WNN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF664WRF bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 2 ENCFF242CKK, ENCFF829HKP, ENCFF876ZSM 6681557 ENCODE Processing Pipeline b6d6cc854cc2453c88911a79acc86452 https://www.encodeproject.org/files/ENCFF664WRF/@@download/ENCFF664WRF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF876JTC bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF991LRY 5502916 ENCODE Processing Pipeline 663e8cff958659837f3a59336b470f2e https://www.encodeproject.org/files/ENCFF876JTC/@@download/ENCFF876JTC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF255SKA bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF428WCT, ENCFF871NUZ 5910983 ENCODE Processing Pipeline 1a54775e476764cdb5f9af5bd2641d90 https://www.encodeproject.org/files/ENCFF255SKA/@@download/ENCFF255SKA.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF069WNS bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF613DSA, ENCFF620EZL 6147376 ENCODE Processing Pipeline b3f11d9c60d051d52eb429f9cfe1601e https://www.encodeproject.org/files/ENCFF069WNS/@@download/ENCFF069WNS.bed.gz hg19 released low read depth ENCFF693ETV bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 5946564 ENCODE Processing Pipeline 8eeb8e9ed18535d626ef61e81c346fd9 https://www.encodeproject.org/files/ENCFF693ETV/@@download/ENCFF693ETV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF813QIG bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF448ALJ 6696456 ENCODE Processing Pipeline d3770d1cb49701c8897d34afc573b6a5 https://www.encodeproject.org/files/ENCFF813QIG/@@download/ENCFF813QIG.bed.gz hg19 released antibody characterized with exemption ENCFF820ZTK bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 2 ENCFF082GBO, ENCFF708IYO 5560359 ENCODE Processing Pipeline f8f01706849c4eee56860e0693bd4143 https://www.encodeproject.org/files/ENCFF820ZTK/@@download/ENCFF820ZTK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF719AHJ bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 2 ENCFF267MTS 6015769 ENCODE Processing Pipeline 3023f0f36f4714dcc1109d80e359940b https://www.encodeproject.org/files/ENCFF719AHJ/@@download/ENCFF719AHJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF875UCR bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 2 ENCFF466PBF 6406182 ENCODE Processing Pipeline f49ab9358eeb7023973f2790d19eb3b4 https://www.encodeproject.org/files/ENCFF875UCR/@@download/ENCFF875UCR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF183FOU bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 7199777 ENCODE Processing Pipeline bad146c1707938eeacedc3cfa7174b29 https://www.encodeproject.org/files/ENCFF183FOU/@@download/ENCFF183FOU.bed.gz hg19 released missing genetic modification characterization ENCFF210KEP bed narrowPeak peaks ENCSR605YWG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2016-11-17 ENCODE 2 ENCFF449NNE, ENCFF934LPP 6366042 ENCODE Processing Pipeline 730a2343c94f5d0cd106f714d857648a https://www.encodeproject.org/files/ENCFF210KEP/@@download/ENCFF210KEP.bed.gz hg19 released antibody characterized with exemption ENCFF408HFJ bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 2 ENCFF172XZA, ENCFF596VZQ, ENCFF843IXX 6969919 ENCODE Processing Pipeline 6da48c77f1a9638554e3c796ecfd53ea https://www.encodeproject.org/files/ENCFF408HFJ/@@download/ENCFF408HFJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF525TUF bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF535YPL 6931646 ENCODE Processing Pipeline 59e74a9b7a09376b96298628b69b2a93 https://www.encodeproject.org/files/ENCFF525TUF/@@download/ENCFF525TUF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF716YYO bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF380CUY 6163098 ENCODE Processing Pipeline 07dd9cd1f5045e0f059d031de28cae46 https://www.encodeproject.org/files/ENCFF716YYO/@@download/ENCFF716YYO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF021SAT bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 7094220 ENCODE Processing Pipeline c0ae0e7431a531a017941e22c329a15d https://www.encodeproject.org/files/ENCFF021SAT/@@download/ENCFF021SAT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF749DAY bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF434WMV, ENCFF817NEK 4929972 ENCODE Processing Pipeline 3b8c3d33e1caae806ca1df659f13255a https://www.encodeproject.org/files/ENCFF749DAY/@@download/ENCFF749DAY.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF644ZTR bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 2 ENCFF687QZJ 6498358 ENCODE Processing Pipeline 1595b9867b2ae9898a3e3b0888d798ad https://www.encodeproject.org/files/ENCFF644ZTR/@@download/ENCFF644ZTR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF458XHM bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF049MPQ, ENCFF778MHV 6307940 ENCODE Processing Pipeline 00f2227c2eaa7b204dae32cbc33ff181 https://www.encodeproject.org/files/ENCFF458XHM/@@download/ENCFF458XHM.bed.gz hg19 released antibody characterized with exemption ENCFF008WCZ bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 2 ENCFF023YTY, ENCFF629YQB 5888774 ENCODE Processing Pipeline 578a6084662c612d255a776121ced563 https://www.encodeproject.org/files/ENCFF008WCZ/@@download/ENCFF008WCZ.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF483QHT bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF778TOE 6812213 ENCODE Processing Pipeline 6d477a04bb9cc5498596c59cefd6922a https://www.encodeproject.org/files/ENCFF483QHT/@@download/ENCFF483QHT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF187DLY bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF584VTC 6797422 ENCODE Processing Pipeline e100c3be710d0933684a970579295886 https://www.encodeproject.org/files/ENCFF187DLY/@@download/ENCFF187DLY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF959BSS bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF754VKI 5959172 ENCODE Processing Pipeline 5130dd852416e154d8619cc2e9ee3f9e https://www.encodeproject.org/files/ENCFF959BSS/@@download/ENCFF959BSS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF423GZH bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 2 ENCFF053ULL, ENCFF500GNW 6055436 ENCODE Processing Pipeline 6b81da2f832fd3de56ca5db061472997 https://www.encodeproject.org/files/ENCFF423GZH/@@download/ENCFF423GZH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF819ZLV bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 2 ENCFF101BQK, ENCFF203ABR 6629888 ENCODE Processing Pipeline 538671cf8156e5669b7aa516f487832b https://www.encodeproject.org/files/ENCFF819ZLV/@@download/ENCFF819ZLV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF199FRO bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF921NVQ 7002376 ENCODE Processing Pipeline c421f1d8f4006fbfe7882fc68e83cda1 https://www.encodeproject.org/files/ENCFF199FRO/@@download/ENCFF199FRO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF414XQK bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF057OSU 6071395 ENCODE Processing Pipeline 84d5a9c8d95bf70ec239648d32980e37 https://www.encodeproject.org/files/ENCFF414XQK/@@download/ENCFF414XQK.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF138XJT bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 2 ENCFF523PEG, ENCFF773XAD 5167428 ENCODE Processing Pipeline 1a4fc262ff8b6b7d1b7a7af59ee3373f https://www.encodeproject.org/files/ENCFF138XJT/@@download/ENCFF138XJT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF863GRL bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF447KVS, ENCFF815ASL, ENCFF823USR 7074759 ENCODE Processing Pipeline 5263cdd4b03cbdcb27cb531a43af6cc7 https://www.encodeproject.org/files/ENCFF863GRL/@@download/ENCFF863GRL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF277IZH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF581KEJ 6638468 ENCODE Processing Pipeline 36d9bfe21968a5410a8c3ac308937f8d https://www.encodeproject.org/files/ENCFF277IZH/@@download/ENCFF277IZH.bed.gz hg19 released borderline replicate concordance ENCFF513UXW bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 2 ENCFF744CYD 6510293 ENCODE Processing Pipeline 1bf9fc4fab792704af33996a42bed991 https://www.encodeproject.org/files/ENCFF513UXW/@@download/ENCFF513UXW.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF321XZG bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF584CLK 6808997 ENCODE Processing Pipeline bb8b58d37a66cc6df420e4ad5abead38 https://www.encodeproject.org/files/ENCFF321XZG/@@download/ENCFF321XZG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF816KBT bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 6588877 ENCODE Processing Pipeline 5abbf5c5eef77f27ff04b1ba5489df94 https://www.encodeproject.org/files/ENCFF816KBT/@@download/ENCFF816KBT.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF625DLL bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF705ZEH, ENCFF763SGF 5167937 ENCODE Processing Pipeline 993512bb20f3eefb5731f9d5dc7a5701 https://www.encodeproject.org/files/ENCFF625DLL/@@download/ENCFF625DLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF768USG bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 2 ENCFF479IHH, ENCFF968XOX 6946843 ENCODE Processing Pipeline 745f5ce37edc7b4e7134cbfed6a06e23 https://www.encodeproject.org/files/ENCFF768USG/@@download/ENCFF768USG.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF545KPN bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF361EAX 7072656 ENCODE Processing Pipeline 2baef025f9d76209d7680d63137d7918 https://www.encodeproject.org/files/ENCFF545KPN/@@download/ENCFF545KPN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF020KDS bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 2 ENCFF023YTY, ENCFF924APX 5933196 ENCODE Processing Pipeline 1d1443d84b49277161cee74feac704b4 https://www.encodeproject.org/files/ENCFF020KDS/@@download/ENCFF020KDS.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF117BUH bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF545ZPB 6693164 ENCODE Processing Pipeline 1733f5034e78fa24ebe8b64d686bc922 https://www.encodeproject.org/files/ENCFF117BUH/@@download/ENCFF117BUH.bed.gz hg19 released ENCFF863BUI bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF332QUM 5827292 ENCODE Processing Pipeline 54f1ee4a426541aff84a63284c6c48d7 https://www.encodeproject.org/files/ENCFF863BUI/@@download/ENCFF863BUI.bed.gz hg19 released borderline replicate concordance ENCFF904JFG bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF745TZN 6852614 ENCODE Processing Pipeline 500d04a0c0adb72a12ce4c535498d6d5 https://www.encodeproject.org/files/ENCFF904JFG/@@download/ENCFF904JFG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF549JYE bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 2 ENCFF834TUP, ENCFF919XGC 7294885 ENCODE Processing Pipeline c69725cc8f688211356ca018373a030c https://www.encodeproject.org/files/ENCFF549JYE/@@download/ENCFF549JYE.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF482LKM bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 6444097 ENCODE Processing Pipeline c3ce88fd1d3c7ec3c755107b7a8bac6e https://www.encodeproject.org/files/ENCFF482LKM/@@download/ENCFF482LKM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF684QNN bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF287FTU 6790311 ENCODE Processing Pipeline ca9f88b167eafe7d477d98130f917a68 https://www.encodeproject.org/files/ENCFF684QNN/@@download/ENCFF684QNN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF207HZD bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 2 ENCFF234PKC, ENCFF985LZI 5649743 ENCODE Processing Pipeline 0555764c4566ad7d32c7afc448d29081 https://www.encodeproject.org/files/ENCFF207HZD/@@download/ENCFF207HZD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF810MGC bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 6915987 ENCODE Processing Pipeline a3c8fdc3ddfd955a8ff0e3dc31180d4d https://www.encodeproject.org/files/ENCFF810MGC/@@download/ENCFF810MGC.bed.gz hg19 released mild to moderate bottlenecking ENCFF820VNX bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF965EEE 6994783 ENCODE Processing Pipeline ac58b0e39d12400874b8ef450dcc5ddd https://www.encodeproject.org/files/ENCFF820VNX/@@download/ENCFF820VNX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF568HFI bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF991VFZ 6499368 ENCODE Processing Pipeline c8f07aa1611f4435d7510efe46b335d9 https://www.encodeproject.org/files/ENCFF568HFI/@@download/ENCFF568HFI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF375BJW bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF462CGH 6930500 ENCODE Processing Pipeline 41dad94b847528dce40daaaf72e39dd3 https://www.encodeproject.org/files/ENCFF375BJW/@@download/ENCFF375BJW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF021GNS bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF953XVS 6788346 ENCODE Processing Pipeline 2b634e363e2df18273d0829fe2291a16 https://www.encodeproject.org/files/ENCFF021GNS/@@download/ENCFF021GNS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF669TVR bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF965CLW 6305494 ENCODE Processing Pipeline 121da7a2bbfcddf37cdbc51915df2bac https://www.encodeproject.org/files/ENCFF669TVR/@@download/ENCFF669TVR.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF980ENB bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431XVO, ENCFF572OMD 5998545 ENCODE Processing Pipeline a861b9c84c22d404d0e45ef934e017d2 https://www.encodeproject.org/files/ENCFF980ENB/@@download/ENCFF980ENB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF243QDS bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF925MJO 6947536 ENCODE Processing Pipeline fdad4a1cea0d49aae152ffd49f80c00b https://www.encodeproject.org/files/ENCFF243QDS/@@download/ENCFF243QDS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF405GYP bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF795LWN 6532978 ENCODE Processing Pipeline 7dd538179411c1feafb5683291773164 https://www.encodeproject.org/files/ENCFF405GYP/@@download/ENCFF405GYP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF648RFW bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF084EMC, ENCFF705ZEH 4953053 ENCODE Processing Pipeline 003ea0a0ffa5b64321cb1dd310dd88df https://www.encodeproject.org/files/ENCFF648RFW/@@download/ENCFF648RFW.bed.gz hg19 released low read length, low read depth ENCFF880JAA bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 2 ENCFF176IME, ENCFF203ABR 6026446 ENCODE Processing Pipeline 20222ccfe560daa508009531a5a9f799 https://www.encodeproject.org/files/ENCFF880JAA/@@download/ENCFF880JAA.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF875TQG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 6802573 ENCODE Processing Pipeline 51bb4cfa7573995a9a30f2d4d51524c1 https://www.encodeproject.org/files/ENCFF875TQG/@@download/ENCFF875TQG.bed.gz hg19 released antibody characterized with exemption ENCFF386GSB bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 6557928 ENCODE Processing Pipeline 0944330696de858e261473889af491e0 https://www.encodeproject.org/files/ENCFF386GSB/@@download/ENCFF386GSB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF269JVH bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF210CIB 3458692 ENCODE Processing Pipeline a8f02fb68b875e901a7c8caea5dd4008 https://www.encodeproject.org/files/ENCFF269JVH/@@download/ENCFF269JVH.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF716AIG bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 7115295 ENCODE Processing Pipeline e9e72796ae9f43e88c1043dfb722ab1f https://www.encodeproject.org/files/ENCFF716AIG/@@download/ENCFF716AIG.bed.gz hg19 released low read depth ENCFF399NVO bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF581SJH 5975742 ENCODE Processing Pipeline 413f6760f41103dd1844ac503bd7d81b https://www.encodeproject.org/files/ENCFF399NVO/@@download/ENCFF399NVO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF275QAK bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF274XMR, ENCFF387KXA, ENCFF762JSN 7273636 ENCODE Processing Pipeline 24909a9398aa118c1234229d3581211d https://www.encodeproject.org/files/ENCFF275QAK/@@download/ENCFF275QAK.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF959GOJ bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF342NSJ, ENCFF447KVS, ENCFF823USR 7163278 ENCODE Processing Pipeline 537b25e0e2c55fd780856aec3b2305e0 https://www.encodeproject.org/files/ENCFF959GOJ/@@download/ENCFF959GOJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF372IMH bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF618PNT, ENCFF823USR 6616557 ENCODE Processing Pipeline d0198a60543d495af1b7e9646ee40e5a https://www.encodeproject.org/files/ENCFF372IMH/@@download/ENCFF372IMH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF501IBL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 7042297 ENCODE Processing Pipeline 36a535e24307ab7e0d632800d161ebbd https://www.encodeproject.org/files/ENCFF501IBL/@@download/ENCFF501IBL.bed.gz hg19 released mild to moderate bottlenecking ENCFF135ZRF bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF414LDK 6549088 ENCODE Processing Pipeline f665fb69be027834e35ecbb6fe699834 https://www.encodeproject.org/files/ENCFF135ZRF/@@download/ENCFF135ZRF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF686FNX bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF417TCH, ENCFF545DZO 4325250 ENCODE Processing Pipeline 93d52258ba022f5ef861b11690044ca5 https://www.encodeproject.org/files/ENCFF686FNX/@@download/ENCFF686FNX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF659PMQ bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 2 ENCFF133REZ, ENCFF203ABR 6845292 ENCODE Processing Pipeline 09972bea82549ed9d4c64068f54edcd4 https://www.encodeproject.org/files/ENCFF659PMQ/@@download/ENCFF659PMQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF322KIX bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 2 ENCFF651LLF 6320836 ENCODE Processing Pipeline 9cafc5f3c77bfcdbc783b9446a3b8954 https://www.encodeproject.org/files/ENCFF322KIX/@@download/ENCFF322KIX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF033WHB bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 3997652 ENCODE Processing Pipeline 9f73e493214f321be84d88fcc40ae23d https://www.encodeproject.org/files/ENCFF033WHB/@@download/ENCFF033WHB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF639APX bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF410PKI, ENCFF950YAN 1333674 ENCODE Processing Pipeline 387e0af54d0a526e1bacee665d50a446 https://www.encodeproject.org/files/ENCFF639APX/@@download/ENCFF639APX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF897KUN bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF976AUQ 6231940 ENCODE Processing Pipeline c0160fe73d3a7d2060e4381c6338fdc5 https://www.encodeproject.org/files/ENCFF897KUN/@@download/ENCFF897KUN.bed.gz hg19 released ENCFF003TOD bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 5394737 ENCODE Processing Pipeline e51539b0a46991b9c84fffe5205f9087 https://www.encodeproject.org/files/ENCFF003TOD/@@download/ENCFF003TOD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF078EBJ bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF850VBC 4712048 ENCODE Processing Pipeline cb1dad2c3fc0d5a95c7389785e59fc44 https://www.encodeproject.org/files/ENCFF078EBJ/@@download/ENCFF078EBJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF328CFX bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 7136440 ENCODE Processing Pipeline 810236d029fcaf78be8fa13ce6816e7d https://www.encodeproject.org/files/ENCFF328CFX/@@download/ENCFF328CFX.bed.gz hg19 released mild to moderate bottlenecking ENCFF517QNU bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF026NGK, ENCFF998GMZ 4438555 ENCODE Processing Pipeline 3214b84988940e0c8d9440e92627a546 https://www.encodeproject.org/files/ENCFF517QNU/@@download/ENCFF517QNU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF954MNX bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032SQZ, ENCFF161AYB 4017745 ENCODE Processing Pipeline ecdf168ac071ca6829d0be3973069f39 https://www.encodeproject.org/files/ENCFF954MNX/@@download/ENCFF954MNX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF766QCW bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF184LBH, ENCFF599MVB 4978700 ENCODE Processing Pipeline 719af19fa0da1ce29181bc2e62801e8f https://www.encodeproject.org/files/ENCFF766QCW/@@download/ENCFF766QCW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF843HVE bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 2 ENCFF092RQT, ENCFF999EQI 5867098 ENCODE Processing Pipeline 391921cb41d51a952968e8ff39b65428 https://www.encodeproject.org/files/ENCFF843HVE/@@download/ENCFF843HVE.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF211SVA bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 6924816 ENCODE Processing Pipeline 5528a183e778bf623e56668345a1f83d https://www.encodeproject.org/files/ENCFF211SVA/@@download/ENCFF211SVA.bed.gz hg19 released ENCFF762YNF bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF084PMJ 6251176 ENCODE Processing Pipeline 7ed798b9497c7602c831b612b156f34e https://www.encodeproject.org/files/ENCFF762YNF/@@download/ENCFF762YNF.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF086UBE bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF018KVH, ENCFF182WHU 6630194 ENCODE Processing Pipeline 0251f1dd48707a11b670f10e086ec9e6 https://www.encodeproject.org/files/ENCFF086UBE/@@download/ENCFF086UBE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF348CSG bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 6747071 ENCODE Processing Pipeline d4dc54ad489f3d6b04ffc30b0091448b https://www.encodeproject.org/files/ENCFF348CSG/@@download/ENCFF348CSG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF606TEA bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 2 ENCFF130RDX, ENCFF990ZOB 7210069 ENCODE Processing Pipeline 48f782a7be2f1c2cbeb3286ef0fcc710 https://www.encodeproject.org/files/ENCFF606TEA/@@download/ENCFF606TEA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF863YSM bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF571MOX 6639422 ENCODE Processing Pipeline 164b51b4fd7027921f8ba66bff29db06 https://www.encodeproject.org/files/ENCFF863YSM/@@download/ENCFF863YSM.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF968NOA bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF154LYO, ENCFF864UEQ 6825188 ENCODE Processing Pipeline 3c4bb896361c74cab3300f5c5fe8335c https://www.encodeproject.org/files/ENCFF968NOA/@@download/ENCFF968NOA.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF823WZI bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF014SDL, ENCFF182WHU 6646832 ENCODE Processing Pipeline 10dfae0e7ab320b6dbc219fc9bf80104 https://www.encodeproject.org/files/ENCFF823WZI/@@download/ENCFF823WZI.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF467VSE bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF698TEA 6687741 ENCODE Processing Pipeline 30fcb7f75e1bee1b642ce85d33d815d1 https://www.encodeproject.org/files/ENCFF467VSE/@@download/ENCFF467VSE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF908VCH bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF739MET 6247113 ENCODE Processing Pipeline da189223a005217fb5c2881d257510e7 https://www.encodeproject.org/files/ENCFF908VCH/@@download/ENCFF908VCH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF217GDM bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 2 ENCFF485RWA, ENCFF602SNK, ENCFF620EZL 6279347 ENCODE Processing Pipeline ad8ea3b2b4fa06a29b27ce0434f9a526 https://www.encodeproject.org/files/ENCFF217GDM/@@download/ENCFF217GDM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF458VAF bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF140ELP, ENCFF583FAG 6781614 ENCODE Processing Pipeline e3cc23ee7d187047a4a7a8fe7da20e68 https://www.encodeproject.org/files/ENCFF458VAF/@@download/ENCFF458VAF.bed.gz hg19 released antibody characterized with exemption ENCFF869FPC bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF708YID, ENCFF801GGG, ENCFF881DVS 6521460 ENCODE Processing Pipeline 044447908dfa91b726508ee6e9bc13bd https://www.encodeproject.org/files/ENCFF869FPC/@@download/ENCFF869FPC.bed.gz hg19 released missing control alignments ENCFF149SPA bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 2 ENCFF035ZYM, ENCFF051LWI 6948836 ENCODE Processing Pipeline 1c1779bba1510798d565851ba88f06cf https://www.encodeproject.org/files/ENCFF149SPA/@@download/ENCFF149SPA.bed.gz hg19 released ENCFF475MVE bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 7258645 ENCODE Processing Pipeline 74c8b5289db24f8647fa9d14f3b842ba https://www.encodeproject.org/files/ENCFF475MVE/@@download/ENCFF475MVE.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF005NYL bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF182WHU, ENCFF220ZJP 7203704 ENCODE Processing Pipeline a53d0f15215b278e8664cf25fcd06234 https://www.encodeproject.org/files/ENCFF005NYL/@@download/ENCFF005NYL.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF757QKH bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6091251 ENCODE Processing Pipeline 055a53216518c26f07711740a76aa0f8 https://www.encodeproject.org/files/ENCFF757QKH/@@download/ENCFF757QKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF681JGU bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6297209 ENCODE Processing Pipeline 2315bfbb3f3eff54642a7e9fdfb40efe https://www.encodeproject.org/files/ENCFF681JGU/@@download/ENCFF681JGU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF500PCI bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF957ELP 6184115 ENCODE Processing Pipeline 9dfe921383062e98cf5d937a114b8b4d https://www.encodeproject.org/files/ENCFF500PCI/@@download/ENCFF500PCI.bed.gz hg19 released borderline replicate concordance ENCFF272ULK bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF300QTI, ENCFF457CIV 5730572 ENCODE Processing Pipeline 6ed5a6aad90593c15534d55f3255d91a https://www.encodeproject.org/files/ENCFF272ULK/@@download/ENCFF272ULK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF904OAW bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF302SCR, ENCFF999EQI 6162004 ENCODE Processing Pipeline c0e2723097c48f7a7a56c2195de986d5 https://www.encodeproject.org/files/ENCFF904OAW/@@download/ENCFF904OAW.bed.gz hg19 released ENCFF086WBN bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF174YPE, ENCFF534AFH 6039099 ENCODE Processing Pipeline 4f2ff68cfdf21588992ce9392bcc0126 https://www.encodeproject.org/files/ENCFF086WBN/@@download/ENCFF086WBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF222IPA bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 7317471 ENCODE Processing Pipeline c4bb1ea6ab46ad9239a67648d69ef2b4 https://www.encodeproject.org/files/ENCFF222IPA/@@download/ENCFF222IPA.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF962EUZ bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF881DVS, ENCFF922RIH 6364390 ENCODE Processing Pipeline 5e21caba420cbb88768759f206769cc7 https://www.encodeproject.org/files/ENCFF962EUZ/@@download/ENCFF962EUZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF377TYD bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 2 ENCFF325QBB, ENCFF999EQI 6091677 ENCODE Processing Pipeline a80364c030ea66fb2f5746a443860535 https://www.encodeproject.org/files/ENCFF377TYD/@@download/ENCFF377TYD.bed.gz hg19 released borderline replicate concordance ENCFF358OVY bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 2 ENCFF169QDL, ENCFF676IWT 6259823 ENCODE Processing Pipeline 15e2f932dc293fcb2bc94be182ced32e https://www.encodeproject.org/files/ENCFF358OVY/@@download/ENCFF358OVY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF413ETF bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF345IKW 6641125 ENCODE Processing Pipeline 19cc28863f7fd760e831d9789aaec04c https://www.encodeproject.org/files/ENCFF413ETF/@@download/ENCFF413ETF.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF537CVM bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 2 ENCFF494KEU 6413610 ENCODE Processing Pipeline e255a26d1c5549872332da0f97e68d06 https://www.encodeproject.org/files/ENCFF537CVM/@@download/ENCFF537CVM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF208MYK bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF148POB, ENCFF172XZA, ENCFF843IXX 6699545 ENCODE Processing Pipeline f498ff7c88c3fc3a35af8cbdea109157 https://www.encodeproject.org/files/ENCFF208MYK/@@download/ENCFF208MYK.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF211EQN bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 2 ENCFF129IXY, ENCFF949SXE 7188875 ENCODE Processing Pipeline 9503995f71ff536c4adfe93168cc0182 https://www.encodeproject.org/files/ENCFF211EQN/@@download/ENCFF211EQN.bed.gz hg19 released missing genetic modification characterization ENCFF401IHO bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF805RHS 7017854 ENCODE Processing Pipeline 79ae812ed183bdf0f04c2100e22121fd https://www.encodeproject.org/files/ENCFF401IHO/@@download/ENCFF401IHO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF629GGT bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 2 ENCFF064YUE, ENCFF878ETO 5713700 ENCODE Processing Pipeline a321149a06867510cb81062207589609 https://www.encodeproject.org/files/ENCFF629GGT/@@download/ENCFF629GGT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF866TCF bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 2 ENCFF764PZX, ENCFF977MTW 6282247 ENCODE Processing Pipeline 5266e1b14addcb13437e5be3c60e2a4a https://www.encodeproject.org/files/ENCFF866TCF/@@download/ENCFF866TCF.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF609LOZ bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 5522784 ENCODE Processing Pipeline 90f8e7d8022f73e44109afeff47bf187 https://www.encodeproject.org/files/ENCFF609LOZ/@@download/ENCFF609LOZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF596FKZ bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 2 ENCFF139ZPI, ENCFF203ABR 6483936 ENCODE Processing Pipeline 644d402386f8931742215280bbac6f4e https://www.encodeproject.org/files/ENCFF596FKZ/@@download/ENCFF596FKZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF765UQI bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF572AJL 6943544 ENCODE Processing Pipeline e0584d3c2b4152b57ee1011564dc3c67 https://www.encodeproject.org/files/ENCFF765UQI/@@download/ENCFF765UQI.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF056MRN bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF049MPQ, ENCFF394QUX 6177313 ENCODE Processing Pipeline b6d7d75ce5807193eb368c2c9f2fc195 https://www.encodeproject.org/files/ENCFF056MRN/@@download/ENCFF056MRN.bed.gz hg19 released ENCFF568AYW bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF866PMJ 6752047 ENCODE Processing Pipeline 6785dfddf0a1eaa0d930cc2f2123e62e https://www.encodeproject.org/files/ENCFF568AYW/@@download/ENCFF568AYW.bed.gz hg19 released low read depth ENCFF304PKL bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF063MSS, ENCFF447KVS, ENCFF823USR 6656620 ENCODE Processing Pipeline 333e1aa02bad4845338ec65b685f4f08 https://www.encodeproject.org/files/ENCFF304PKL/@@download/ENCFF304PKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF026SKI bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 6500124 ENCODE Processing Pipeline e9deff36e8ad4de02867558a33ef1222 https://www.encodeproject.org/files/ENCFF026SKI/@@download/ENCFF026SKI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF855KUE bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF667ECB, ENCFF922JGL 3697535 ENCODE Processing Pipeline a3464c93be77824ae771ff63f14e795d https://www.encodeproject.org/files/ENCFF855KUE/@@download/ENCFF855KUE.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF849NGF bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 2 ENCFF080BSG, ENCFF160VXC, ENCFF834TUP 7073903 ENCODE Processing Pipeline c95f638a38ecf23b1d2c16768da90c41 https://www.encodeproject.org/files/ENCFF849NGF/@@download/ENCFF849NGF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF824HYC bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF307YVY, ENCFF956QBZ 5534107 ENCODE Processing Pipeline e2904f54e8e1fca09bb65b1ec56f6cf2 https://www.encodeproject.org/files/ENCFF824HYC/@@download/ENCFF824HYC.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF879HCW bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF692CCY, ENCFF956QBZ 5733069 ENCODE Processing Pipeline 76186825d37383865e921606496f6b6b https://www.encodeproject.org/files/ENCFF879HCW/@@download/ENCFF879HCW.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF566QTT bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF960FUD 7002875 ENCODE Processing Pipeline 600fb82586199d1124e579a2893f3444 https://www.encodeproject.org/files/ENCFF566QTT/@@download/ENCFF566QTT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF452APP bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 7232348 ENCODE Processing Pipeline d8e765c46ac02fdee078d67da3163340 https://www.encodeproject.org/files/ENCFF452APP/@@download/ENCFF452APP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF440OBY bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 4474802 ENCODE Processing Pipeline 3a3df51f9159bd917167447c0f6804b9 https://www.encodeproject.org/files/ENCFF440OBY/@@download/ENCFF440OBY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF289WNM bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF760ZDH 4083917 ENCODE Processing Pipeline f6becf07c7072d721a616f82d8828bd6 https://www.encodeproject.org/files/ENCFF289WNM/@@download/ENCFF289WNM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF022XIX bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV 6385906 ENCODE Processing Pipeline 408cc21c088095523b2496686055c974 https://www.encodeproject.org/files/ENCFF022XIX/@@download/ENCFF022XIX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF490XLD bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 2 ENCFF834TUP, ENCFF984QQT 7111483 ENCODE Processing Pipeline 5c956902a94641b04b8a3f59bc08f2c6 https://www.encodeproject.org/files/ENCFF490XLD/@@download/ENCFF490XLD.bed.gz hg19 released mild to moderate bottlenecking ENCFF436DJC bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF515BLD 5199549 ENCODE Processing Pipeline 8f0a59206a2ac5618bb18337dfae2e7b https://www.encodeproject.org/files/ENCFF436DJC/@@download/ENCFF436DJC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF677XOS bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF978OOP 7204705 ENCODE Processing Pipeline 614d40655601b670b3d7550d1f041a7f https://www.encodeproject.org/files/ENCFF677XOS/@@download/ENCFF677XOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF357IPW bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 2 ENCFF304EUO, ENCFF866OLR 6081540 ENCODE Processing Pipeline 9ff6ea0815cc9537fdb85397e1843422 https://www.encodeproject.org/files/ENCFF357IPW/@@download/ENCFF357IPW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF270NTV bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 2 ENCFF195ADD, ENCFF592WAL, ENCFF901CND 7114875 ENCODE Processing Pipeline 059805cdf7eca1e7e69fced8db3c4870 https://www.encodeproject.org/files/ENCFF270NTV/@@download/ENCFF270NTV.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF837BDB bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 3858506 ENCODE Processing Pipeline 9daa2ed65158062bc55f643142b2d1bc https://www.encodeproject.org/files/ENCFF837BDB/@@download/ENCFF837BDB.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF443OXB bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 4310832 ENCODE Processing Pipeline a765467f07d8ac9c4e8183b883573cd7 https://www.encodeproject.org/files/ENCFF443OXB/@@download/ENCFF443OXB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF371MFR bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF749FQP 5585027 ENCODE Processing Pipeline bce3f2a863bb75de6f0b4b62d6677066 https://www.encodeproject.org/files/ENCFF371MFR/@@download/ENCFF371MFR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF397JOR bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF581OIB 5439352 ENCODE Processing Pipeline 0a867320804a243e5690f3226ee3ba8c https://www.encodeproject.org/files/ENCFF397JOR/@@download/ENCFF397JOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF330USX bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF005ZIF, ENCFF092AFJ 4661677 ENCODE Processing Pipeline c61287a804e07db675245f5fe75c64e5 https://www.encodeproject.org/files/ENCFF330USX/@@download/ENCFF330USX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF520CHA bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 2 ENCFF834TUP, ENCFF982XUS 6640626 ENCODE Processing Pipeline 3bc01a3e3799b65a9311bba589dadedc https://www.encodeproject.org/files/ENCFF520CHA/@@download/ENCFF520CHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF592OPP bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF064JKD, ENCFF991UTU 5999715 ENCODE Processing Pipeline a15f38fb65d200a33fec2d4c281babc9 https://www.encodeproject.org/files/ENCFF592OPP/@@download/ENCFF592OPP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF012GOG bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 3694904 ENCODE Processing Pipeline 6b4da5dee3c34bbed24a83628e774d40 https://www.encodeproject.org/files/ENCFF012GOG/@@download/ENCFF012GOG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF434TLG bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134LQW, ENCFF790IAM 4875322 ENCODE Processing Pipeline cbc2135234f89eb5e48555ed922ad0ff https://www.encodeproject.org/files/ENCFF434TLG/@@download/ENCFF434TLG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF303OST bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF222XNY 6744989 ENCODE Processing Pipeline cdfc6e5c799192f140ca4b3d9f0347cc https://www.encodeproject.org/files/ENCFF303OST/@@download/ENCFF303OST.bed.gz hg19 released low read depth ENCFF211PND bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 3133805 ENCODE Processing Pipeline 7b3c014da2fb8c5e41950d2bd25f182f https://www.encodeproject.org/files/ENCFF211PND/@@download/ENCFF211PND.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF449TFM bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV 6864443 ENCODE Processing Pipeline 2e9eed6ee7a02a14ffa6427b2765eabf https://www.encodeproject.org/files/ENCFF449TFM/@@download/ENCFF449TFM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF025EPQ bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ 6294877 ENCODE Processing Pipeline 6443909ca96461f1eea1cae41e00b2dc https://www.encodeproject.org/files/ENCFF025EPQ/@@download/ENCFF025EPQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF853ZNE bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF069OPS, ENCFF654EHF, ENCFF807CUF 6487660 ENCODE Processing Pipeline 1b89d3e45d2d80750516edc45ed84b43 https://www.encodeproject.org/files/ENCFF853ZNE/@@download/ENCFF853ZNE.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF729QET bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 2 ENCFF650GFB, ENCFF902ZSU 5799895 ENCODE Processing Pipeline 4d47954daa1cf0a7dbd215a3809f808a https://www.encodeproject.org/files/ENCFF729QET/@@download/ENCFF729QET.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF789DUE bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 2 ENCFF719JNQ, ENCFF834TUP 7334096 ENCODE Processing Pipeline dc8ca93624ffa5580dd9bdb280637134 https://www.encodeproject.org/files/ENCFF789DUE/@@download/ENCFF789DUE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF003GWJ bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF802ETH, ENCFF991UTU 5637380 ENCODE Processing Pipeline 3c61c90619cf338818f7c6c1ae745df7 https://www.encodeproject.org/files/ENCFF003GWJ/@@download/ENCFF003GWJ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF955CAT bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF640TLM, ENCFF991UTU 5885283 ENCODE Processing Pipeline f9b49f59d2a5715f533d621c7174e080 https://www.encodeproject.org/files/ENCFF955CAT/@@download/ENCFF955CAT.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF972ILN bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF293WLB, ENCFF359TIO 5187445 ENCODE Processing Pipeline 57a4c44881b7a7f7237879868d6fcf42 https://www.encodeproject.org/files/ENCFF972ILN/@@download/ENCFF972ILN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF721XMZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 4478670 ENCODE Processing Pipeline bc76f2eab44b0aa0ed65b9105e5c573a https://www.encodeproject.org/files/ENCFF721XMZ/@@download/ENCFF721XMZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF077SAE bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 2 ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 6051932 ENCODE Processing Pipeline dede322ac318214dd1b720b562e528c6 https://www.encodeproject.org/files/ENCFF077SAE/@@download/ENCFF077SAE.bed.gz hg19 released antibody characterized with exemption ENCFF656UAV bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 2 ENCFF489ACL, ENCFF834TUP 6972023 ENCODE Processing Pipeline f3f1963e6d236b562fc35d5b12e9b8cc https://www.encodeproject.org/files/ENCFF656UAV/@@download/ENCFF656UAV.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF922PHV bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 6969742 ENCODE Processing Pipeline 6700d7b2ae8dec2c164fcf17c1a6a239 https://www.encodeproject.org/files/ENCFF922PHV/@@download/ENCFF922PHV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF051XDB bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF185WOT 5893626 ENCODE Processing Pipeline 0b0362e4eda51953479803587a18ad88 https://www.encodeproject.org/files/ENCFF051XDB/@@download/ENCFF051XDB.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF571PKW bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF299MPV, ENCFF807CUF 6654694 ENCODE Processing Pipeline 4f4cba258c42983c2a149b343143af6c https://www.encodeproject.org/files/ENCFF571PKW/@@download/ENCFF571PKW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF112QCZ bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF331AQC, ENCFF864ASU 6365250 ENCODE Processing Pipeline 0ac1746ce2b3d8497f81d3f3f487eed8 https://www.encodeproject.org/files/ENCFF112QCZ/@@download/ENCFF112QCZ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF180UKE bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF503PLN 7201268 ENCODE Processing Pipeline a8b66427d6943a5ae87ab9ca94e1a154 https://www.encodeproject.org/files/ENCFF180UKE/@@download/ENCFF180UKE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF772MXQ bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF370NFJ, ENCFF596HMK 5174309 ENCODE Processing Pipeline f31d5c2f414ed1d0e8227375ba4456a0 https://www.encodeproject.org/files/ENCFF772MXQ/@@download/ENCFF772MXQ.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF088ETE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF807CUF, ENCFF924XUU 5730112 ENCODE Processing Pipeline 69f10978867227b1778fdc35f1339bfd https://www.encodeproject.org/files/ENCFF088ETE/@@download/ENCFF088ETE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF767AKC bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF020MRS, ENCFF041XFO 6128691 ENCODE Processing Pipeline 067f275317e354aa6c0420eb3787ad0f https://www.encodeproject.org/files/ENCFF767AKC/@@download/ENCFF767AKC.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF963HHX bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF297FMS, ENCFF807CUF 4923460 ENCODE Processing Pipeline 1e73c81529035da9f85ec2cf5613081b https://www.encodeproject.org/files/ENCFF963HHX/@@download/ENCFF963HHX.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF542JSY bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4165438 ENCODE Processing Pipeline ba3e8d02fb54cd34157a8089726aaa96 https://www.encodeproject.org/files/ENCFF542JSY/@@download/ENCFF542JSY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF907QKO bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4316930 ENCODE Processing Pipeline a4549a0cc1168a9c397a432250623783 https://www.encodeproject.org/files/ENCFF907QKO/@@download/ENCFF907QKO.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF995FGG bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 2 ENCFF305LRO, ENCFF969DYI, ENCFF994YBV 6235893 ENCODE Processing Pipeline 42d466ae63217d0f4e7128436136984f https://www.encodeproject.org/files/ENCFF995FGG/@@download/ENCFF995FGG.bed.gz hg19 released low read depth ENCFF322ADA bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 2 ENCFF553BBH, ENCFF801GGG, ENCFF881DVS 5923710 ENCODE Processing Pipeline d165c2b218458189ddd63df0db8f3f1d https://www.encodeproject.org/files/ENCFF322ADA/@@download/ENCFF322ADA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF810FLM bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF520IDM, ENCFF654EHF, ENCFF991UTU 6491970 ENCODE Processing Pipeline e3e312be3c9440fd1362b9698a943da2 https://www.encodeproject.org/files/ENCFF810FLM/@@download/ENCFF810FLM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF045GWC bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF432HQR 5893336 ENCODE Processing Pipeline bcfd36c5f953f44313654a6c3757e8b7 https://www.encodeproject.org/files/ENCFF045GWC/@@download/ENCFF045GWC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF605EKW bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF139XLL 6259856 ENCODE Processing Pipeline 71de1c7e0910843bf3eee383285b2c79 https://www.encodeproject.org/files/ENCFF605EKW/@@download/ENCFF605EKW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF373SRH bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF150BNL, ENCFF871NUZ 5660379 ENCODE Processing Pipeline 569017cf25d35c0cfea55ceb5e9876cd https://www.encodeproject.org/files/ENCFF373SRH/@@download/ENCFF373SRH.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF047WBC bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF379HIU 5314400 ENCODE Processing Pipeline 37fd80ee2f41d36cd1939bf965d71815 https://www.encodeproject.org/files/ENCFF047WBC/@@download/ENCFF047WBC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF138QHW bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 2 ENCFF469YUW, ENCFF658ADO 6967604 ENCODE Processing Pipeline 3332e75add43e3f65ea6492367248cb1 https://www.encodeproject.org/files/ENCFF138QHW/@@download/ENCFF138QHW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF044ASF bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 5883861 ENCODE Processing Pipeline 72c233681b4110fc7b0b05c604de3f7f https://www.encodeproject.org/files/ENCFF044ASF/@@download/ENCFF044ASF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF019DFB bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 5488272 ENCODE Processing Pipeline 664ac255bd20196d280131b4d8a991c6 https://www.encodeproject.org/files/ENCFF019DFB/@@download/ENCFF019DFB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF490ZQW bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 2 ENCFF357MEA, ENCFF523XHJ 7019384 ENCODE Processing Pipeline e0167fabd2b873b50d51fa3aec537cf9 https://www.encodeproject.org/files/ENCFF490ZQW/@@download/ENCFF490ZQW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF726OZS bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 4681440 ENCODE Processing Pipeline 1dd1aa8e753206f395d457c2e4a927cc https://www.encodeproject.org/files/ENCFF726OZS/@@download/ENCFF726OZS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF845PQC bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF042GNN, ENCFF958RTR 6537897 ENCODE Processing Pipeline 2322b3a07590c5f56743de44dbba206a https://www.encodeproject.org/files/ENCFF845PQC/@@download/ENCFF845PQC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF963HCJ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7164736 ENCODE Processing Pipeline 039c388c95fdaa3efb9c4ed44ccee9df https://www.encodeproject.org/files/ENCFF963HCJ/@@download/ENCFF963HCJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF239HMM bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF475BTD, ENCFF747YRH 6521714 ENCODE Processing Pipeline 3fbc012afa2e16179811ce82e7d23b19 https://www.encodeproject.org/files/ENCFF239HMM/@@download/ENCFF239HMM.bed.gz hg19 released experiment not submitted to GEO ENCFF049BZC bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF188BAD 6041492 ENCODE Processing Pipeline 96094173bb2a049f4f99fca32ea65bf8 https://www.encodeproject.org/files/ENCFF049BZC/@@download/ENCFF049BZC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF888HHD bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF767XMC 5914961 ENCODE Processing Pipeline af20eb5c75bc8a737204c9a91711e095 https://www.encodeproject.org/files/ENCFF888HHD/@@download/ENCFF888HHD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF005FQK bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 6751907 ENCODE Processing Pipeline 75e5a27a47da2d88059b6c23b5480bc1 https://www.encodeproject.org/files/ENCFF005FQK/@@download/ENCFF005FQK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF425OPL bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF954WQD 4584722 ENCODE Processing Pipeline cdd2bae7c6ee87d711d7a5a52062b814 https://www.encodeproject.org/files/ENCFF425OPL/@@download/ENCFF425OPL.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF662CIT bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 5665796 ENCODE Processing Pipeline 734bfef27a0bf430b9620e9a05ddb2b0 https://www.encodeproject.org/files/ENCFF662CIT/@@download/ENCFF662CIT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF315NKB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 2 ENCFF051LWI, ENCFF895ARY 6499963 ENCODE Processing Pipeline a110ec62c08db14cd9252d40779c1ef5 https://www.encodeproject.org/files/ENCFF315NKB/@@download/ENCFF315NKB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF979MCB bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671VNQ, ENCFF941REB 5970345 ENCODE Processing Pipeline c5459bed20b5594654bb2f3f4ead91f3 https://www.encodeproject.org/files/ENCFF979MCB/@@download/ENCFF979MCB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF924RTU bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF895FUF 5165733 ENCODE Processing Pipeline cc7d2a5f310991fd7605497aa85aba1e https://www.encodeproject.org/files/ENCFF924RTU/@@download/ENCFF924RTU.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF604XWK bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 6853798 ENCODE Processing Pipeline 0ce20453e7cc72bebc28e6ce7dddc3cf https://www.encodeproject.org/files/ENCFF604XWK/@@download/ENCFF604XWK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF925VOV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 6133457 ENCODE Processing Pipeline 225a6eb7aa177f322f26910ce442b90d https://www.encodeproject.org/files/ENCFF925VOV/@@download/ENCFF925VOV.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF929HKG bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF710HBZ 6616578 ENCODE Processing Pipeline 52c7e8259913e8e9180a9d2c6578d013 https://www.encodeproject.org/files/ENCFF929HKG/@@download/ENCFF929HKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF230ONV bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF017WNE, ENCFF529BVI, ENCFF772FBN 6993974 ENCODE Processing Pipeline 467a0f297fe89e56593980a3c5bf98a2 https://www.encodeproject.org/files/ENCFF230ONV/@@download/ENCFF230ONV.bed.gz hg19 released mild to moderate bottlenecking ENCFF692PZN bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 2 ENCFF134DGA, ENCFF504MHQ 5762717 ENCODE Processing Pipeline 451091687b3aefde73fb058b458e4c48 https://www.encodeproject.org/files/ENCFF692PZN/@@download/ENCFF692PZN.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF097ZJV bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF946PVY 5804488 ENCODE Processing Pipeline 472bf00f4b6a3a1d2536282b1e5bf66c https://www.encodeproject.org/files/ENCFF097ZJV/@@download/ENCFF097ZJV.bed.gz hg19 released borderline replicate concordance ENCFF142TSD bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF498ZBS 6709068 ENCODE Processing Pipeline 3e77296d12b4d227c42c94792b734e8c https://www.encodeproject.org/files/ENCFF142TSD/@@download/ENCFF142TSD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF203SUN bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 6769212 ENCODE Processing Pipeline 23d5725b84132909e80e5661417b18a3 https://www.encodeproject.org/files/ENCFF203SUN/@@download/ENCFF203SUN.bed.gz hg19 released low read depth ENCFF571MRI bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 2 ENCFF170OKS, ENCFF929OSU, ENCFF994YBV 5938296 ENCODE Processing Pipeline 32e9b0c07560c1b1b9594be5438e31ae https://www.encodeproject.org/files/ENCFF571MRI/@@download/ENCFF571MRI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF894NFO bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF812EKJ 6541321 ENCODE Processing Pipeline 961785eb39b5f3d1069b55b9e75f0702 https://www.encodeproject.org/files/ENCFF894NFO/@@download/ENCFF894NFO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF338AGZ bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF905KCK 6537015 ENCODE Processing Pipeline c556e712ba20545c81d98bcb8b0160db https://www.encodeproject.org/files/ENCFF338AGZ/@@download/ENCFF338AGZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF502ZML bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195GBJ, ENCFF599MVB 4856877 ENCODE Processing Pipeline 87d18835bee9c0737f2185185f2ebbcf https://www.encodeproject.org/files/ENCFF502ZML/@@download/ENCFF502ZML.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF993HDF bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF539DZV 6311512 ENCODE Processing Pipeline 6f9b8610d33c0956a0f84b6a45dab71d https://www.encodeproject.org/files/ENCFF993HDF/@@download/ENCFF993HDF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF118YQO bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 6858994 ENCODE Processing Pipeline 7763099fa0d7ef87e37db04101e1b836 https://www.encodeproject.org/files/ENCFF118YQO/@@download/ENCFF118YQO.bed.gz hg19 released low read depth ENCFF369BMF bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF576JOB 7159010 ENCODE Processing Pipeline 6bbd56ec9d30ee5b868b01dad1cd4061 https://www.encodeproject.org/files/ENCFF369BMF/@@download/ENCFF369BMF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF050ZNZ bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF516LSB 6303804 ENCODE Processing Pipeline cde6af2b9b910a015bb46dc56ffd38d8 https://www.encodeproject.org/files/ENCFF050ZNZ/@@download/ENCFF050ZNZ.bed.gz hg19 released ENCFF562WIC bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 6487120 ENCODE Processing Pipeline 8dbfd846077b291aad653f4a95112cea https://www.encodeproject.org/files/ENCFF562WIC/@@download/ENCFF562WIC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF827TVA bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF643WDX 6823194 ENCODE Processing Pipeline f99e6433e27c7d123a4ea6d6aa1212e1 https://www.encodeproject.org/files/ENCFF827TVA/@@download/ENCFF827TVA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF206UIN bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 2 ENCFF092ACZ, ENCFF892CVA 5905358 ENCODE Processing Pipeline 2b36d9bac13bba57a31bcc0042bc5d80 https://www.encodeproject.org/files/ENCFF206UIN/@@download/ENCFF206UIN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF931FDJ bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF338GMK, ENCFF705ZEH 5325342 ENCODE Processing Pipeline c253cf61597b4f3bee4329ea3578c28a https://www.encodeproject.org/files/ENCFF931FDJ/@@download/ENCFF931FDJ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF771POP bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 2 ENCFF061ITH, ENCFF612OEV 5393271 ENCODE Processing Pipeline 3d5ccbf5d23405626938d5298e2ab55d https://www.encodeproject.org/files/ENCFF771POP/@@download/ENCFF771POP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF010BGE bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 2 ENCFF121MMO, ENCFF951BLJ 6256959 ENCODE Processing Pipeline 9b284f55a568bf23aa152ea8203a265a https://www.encodeproject.org/files/ENCFF010BGE/@@download/ENCFF010BGE.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF494IEN bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF229FNO 5964459 ENCODE Processing Pipeline 4e82e7399dff5dd67cb91e195f21589b https://www.encodeproject.org/files/ENCFF494IEN/@@download/ENCFF494IEN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF088RCG bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 2 ENCFF644EWQ 6604906 ENCODE Processing Pipeline 708396ed208f1c4e6e046a8599bd1ab4 https://www.encodeproject.org/files/ENCFF088RCG/@@download/ENCFF088RCG.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF135TJX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 2 ENCFF061QOJ, ENCFF798GLN 6448558 ENCODE Processing Pipeline fe994e22e5535e903c5d1b003e19c321 https://www.encodeproject.org/files/ENCFF135TJX/@@download/ENCFF135TJX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF789TXE bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF574VVE, ENCFF834TUP 6766713 ENCODE Processing Pipeline aae04d472a2b3903a8809739fb6c9195 https://www.encodeproject.org/files/ENCFF789TXE/@@download/ENCFF789TXE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF653KSG bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 2 ENCFF061QOJ, ENCFF697MUV 5013280 ENCODE Processing Pipeline 3b05dbf77ef7c94afb2756e092c442af https://www.encodeproject.org/files/ENCFF653KSG/@@download/ENCFF653KSG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF656TEP bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF182WHU, ENCFF908CYV 6572135 ENCODE Processing Pipeline 6afe1ad0634259d1714ec5530ddbfb9a https://www.encodeproject.org/files/ENCFF656TEP/@@download/ENCFF656TEP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF882PND bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 6275090 ENCODE Processing Pipeline c675cdb91db82617fa4ea75af504c153 https://www.encodeproject.org/files/ENCFF882PND/@@download/ENCFF882PND.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF631RPF bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF998NVU 6673513 ENCODE Processing Pipeline 297918d1376b90a3232336959e5dfdb3 https://www.encodeproject.org/files/ENCFF631RPF/@@download/ENCFF631RPF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF127XOZ bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 5234413 ENCODE Processing Pipeline 2540b3700f187069edc19cf750478f22 https://www.encodeproject.org/files/ENCFF127XOZ/@@download/ENCFF127XOZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF159DHF bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF247RDS, ENCFF592WAL, ENCFF901CND 6956643 ENCODE Processing Pipeline 386e1410c31aac2d42b56a1661363bc5 https://www.encodeproject.org/files/ENCFF159DHF/@@download/ENCFF159DHF.bed.gz hg19 released mild to moderate bottlenecking ENCFF642EEJ bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 2 ENCFF919JRJ 5986896 ENCODE Processing Pipeline 9f7a2a771c19c79799faaf794076b3d0 https://www.encodeproject.org/files/ENCFF642EEJ/@@download/ENCFF642EEJ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF674AYU bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF822QTV, ENCFF999EQI 6306629 ENCODE Processing Pipeline 9a7d70950ca0f45844d3e13316b55692 https://www.encodeproject.org/files/ENCFF674AYU/@@download/ENCFF674AYU.bed.gz hg19 released antibody characterized with exemption ENCFF649DTF bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF237AJA 7159985 ENCODE Processing Pipeline 10c5e7198e03e2408ad159610e2ed94e https://www.encodeproject.org/files/ENCFF649DTF/@@download/ENCFF649DTF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF970NGB bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF258YDE 7015068 ENCODE Processing Pipeline 08c59c7cf79bbb2336108666f30034c4 https://www.encodeproject.org/files/ENCFF970NGB/@@download/ENCFF970NGB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF258KBF bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 6248779 ENCODE Processing Pipeline be3428ea336cd60cd52bdc1fcff809ef https://www.encodeproject.org/files/ENCFF258KBF/@@download/ENCFF258KBF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF662ZAH bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF130BYF, ENCFF182WHU 6625630 ENCODE Processing Pipeline 2fce0db0ccdf770da4264f70d0df5c4a https://www.encodeproject.org/files/ENCFF662ZAH/@@download/ENCFF662ZAH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF551YGS bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF153FSJ 6917819 ENCODE Processing Pipeline 2cae284037126b33f97ce7c6234a34f6 https://www.encodeproject.org/files/ENCFF551YGS/@@download/ENCFF551YGS.bed.gz hg19 released antibody characterized with exemption ENCFF214FTU bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF499RKL, ENCFF956QBZ 4725461 ENCODE Processing Pipeline 32ae8d996cc5d1ecfae20a133d10971d https://www.encodeproject.org/files/ENCFF214FTU/@@download/ENCFF214FTU.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF132GYY bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF956QBZ, ENCFF964YHS 4917436 ENCODE Processing Pipeline e365c57b89ba2e09737b2f7fd3299a31 https://www.encodeproject.org/files/ENCFF132GYY/@@download/ENCFF132GYY.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF735NBF bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF559RLP 6483614 ENCODE Processing Pipeline 324f1b53f8ee7e59ecc200634bde68fb https://www.encodeproject.org/files/ENCFF735NBF/@@download/ENCFF735NBF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF666TVL bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 6573285 ENCODE Processing Pipeline da592a6f1324752fe87aee24fb491ba2 https://www.encodeproject.org/files/ENCFF666TVL/@@download/ENCFF666TVL.bed.gz hg19 released ENCFF875DOP bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK 6703556 ENCODE Processing Pipeline cab2bab5d42e0c93b0d61ce1f20083b5 https://www.encodeproject.org/files/ENCFF875DOP/@@download/ENCFF875DOP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF984IHA bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF206LXZ 6308318 ENCODE Processing Pipeline f4a16dafb784377abd1f6d7f181b7dd3 https://www.encodeproject.org/files/ENCFF984IHA/@@download/ENCFF984IHA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF414BJO bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 4977831 ENCODE Processing Pipeline 7c7077dee92bb8fba520d21de724eb86 https://www.encodeproject.org/files/ENCFF414BJO/@@download/ENCFF414BJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF605AVV bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 7152526 ENCODE Processing Pipeline c1fc0f72e5501ac7de85470d718bf3ed https://www.encodeproject.org/files/ENCFF605AVV/@@download/ENCFF605AVV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF534CIF bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 2 ENCFF700FUA, ENCFF834TUP 6123736 ENCODE Processing Pipeline 1912dede8fd2149f0c07623f8daa48e5 https://www.encodeproject.org/files/ENCFF534CIF/@@download/ENCFF534CIF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF053IVE bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF491SHN 6543669 ENCODE Processing Pipeline 90dfef52ac8083f3669e86d458fcf7e5 https://www.encodeproject.org/files/ENCFF053IVE/@@download/ENCFF053IVE.bed.gz hg19 released low read depth ENCFF350ETZ bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF696YRO, ENCFF834TUP 7122842 ENCODE Processing Pipeline bbcecdde973b7e316a2696ae58a04710 https://www.encodeproject.org/files/ENCFF350ETZ/@@download/ENCFF350ETZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF670NDN bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF666QOX 7008065 ENCODE Processing Pipeline fb61bad4afd6e625fe1b841d2b318320 https://www.encodeproject.org/files/ENCFF670NDN/@@download/ENCFF670NDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF869KQW bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF991XPF 6932464 ENCODE Processing Pipeline 3273e779c299bdeae6219e06b81c38f9 https://www.encodeproject.org/files/ENCFF869KQW/@@download/ENCFF869KQW.bed.gz hg19 released mild to moderate bottlenecking ENCFF774PLL bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF575WLE, ENCFF924UWH 6422575 ENCODE Processing Pipeline 6e1f6dd270aa7c4968e267c53a1eee3a https://www.encodeproject.org/files/ENCFF774PLL/@@download/ENCFF774PLL.bed.gz hg19 released experiment not submitted to GEO ENCFF139HGF bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 5524228 ENCODE Processing Pipeline 2aae8c1ccd397c34a1d4ed546f80f4b6 https://www.encodeproject.org/files/ENCFF139HGF/@@download/ENCFF139HGF.bed.gz hg19 released low read depth ENCFF648RRL bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 6467947 ENCODE Processing Pipeline 4435ee4a7fe139f08413b2140a3f41ff https://www.encodeproject.org/files/ENCFF648RRL/@@download/ENCFF648RRL.bed.gz hg19 released ENCFF168RYI bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 5497898 ENCODE Processing Pipeline 63382d019e0fde4f49a5993034e60f45 https://www.encodeproject.org/files/ENCFF168RYI/@@download/ENCFF168RYI.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF267CBS bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 2 ENCFF162YLU, ENCFF245PJA 5987659 ENCODE Processing Pipeline ddfca0067976c24be42533ed23458433 https://www.encodeproject.org/files/ENCFF267CBS/@@download/ENCFF267CBS.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF850ENR bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 6735588 ENCODE Processing Pipeline f1a7d7acf30f8769e3ec52429b8541d6 https://www.encodeproject.org/files/ENCFF850ENR/@@download/ENCFF850ENR.bed.gz hg19 released ENCFF013REF bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF321CYT, ENCFF514LUN 5482870 ENCODE Processing Pipeline 2f77da514212a67e6b9b46c0f1f7fb40 https://www.encodeproject.org/files/ENCFF013REF/@@download/ENCFF013REF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF472YHR bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF527GGD 5360673 ENCODE Processing Pipeline 3eef564b1fbc3ea5f95219df16d69765 https://www.encodeproject.org/files/ENCFF472YHR/@@download/ENCFF472YHR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF644TNS bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF572OMD, ENCFF759PVZ 5160791 ENCODE Processing Pipeline 6bfa5f6bf5822a3bea2eb7fa002d3b3e https://www.encodeproject.org/files/ENCFF644TNS/@@download/ENCFF644TNS.bed.gz hg19 released low read length, low read depth ENCFF462BHV bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF014NCD, ENCFF182WHU 6675307 ENCODE Processing Pipeline 3f5f2429508539a08ee1c864413580e0 https://www.encodeproject.org/files/ENCFF462BHV/@@download/ENCFF462BHV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF967VMV bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF646UDC, ENCFF823USR 6432976 ENCODE Processing Pipeline 2518687ade1b98d33926dfcc893e41ad https://www.encodeproject.org/files/ENCFF967VMV/@@download/ENCFF967VMV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF819JTY bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF531GWB, ENCFF843IXX 6313755 ENCODE Processing Pipeline f5500d43b4af2fe1d7cc7996277f0915 https://www.encodeproject.org/files/ENCFF819JTY/@@download/ENCFF819JTY.bed.gz hg19 released borderline replicate concordance ENCFF366ELK bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF128DCK, ENCFF578XGS 5210735 ENCODE Processing Pipeline 1ee7a77fbc3276d097af1ec01e875a62 https://www.encodeproject.org/files/ENCFF366ELK/@@download/ENCFF366ELK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF856IOQ bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF293FTN 7007064 ENCODE Processing Pipeline ae25957c3193462c602438160b8c2ba7 https://www.encodeproject.org/files/ENCFF856IOQ/@@download/ENCFF856IOQ.bed.gz hg19 released ENCFF599UGJ bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF580VRU, ENCFF764SIQ, ENCFF951UMF 6182378 ENCODE Processing Pipeline 0463821545dee1f09ee5100c63248030 https://www.encodeproject.org/files/ENCFF599UGJ/@@download/ENCFF599UGJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF665EBH bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 2 ENCFF025OET, ENCFF203ABR 6693445 ENCODE Processing Pipeline b054c92924fe384acaf073005c0a29d5 https://www.encodeproject.org/files/ENCFF665EBH/@@download/ENCFF665EBH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF676GNF bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF321FUE 5813648 ENCODE Processing Pipeline ab35861a70e53bc286761572377cd7f7 https://www.encodeproject.org/files/ENCFF676GNF/@@download/ENCFF676GNF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF458LZF bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF583KIK 6720633 ENCODE Processing Pipeline 10cdbd57a15feec19ece4595e01778ce https://www.encodeproject.org/files/ENCFF458LZF/@@download/ENCFF458LZF.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF466HRK bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF491RBM, ENCFF578XGS 5873802 ENCODE Processing Pipeline 446898d27f7b5c16794a553acaa6cd89 https://www.encodeproject.org/files/ENCFF466HRK/@@download/ENCFF466HRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF138FLC bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF117ALF, ENCFF578XGS 5346050 ENCODE Processing Pipeline b3f8ee63d7fb34911bfa8bd67b16cbb7 https://www.encodeproject.org/files/ENCFF138FLC/@@download/ENCFF138FLC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF713UPR bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF607KWI 5206865 ENCODE Processing Pipeline fa15fb3c95b2b3f04b05c9625afd769e https://www.encodeproject.org/files/ENCFF713UPR/@@download/ENCFF713UPR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF484BXC bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF204OVV 5604294 ENCODE Processing Pipeline 42821014acba8842b34c8e4e74196e06 https://www.encodeproject.org/files/ENCFF484BXC/@@download/ENCFF484BXC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF113AKA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF185TBI 6495886 ENCODE Processing Pipeline 7494f70453ea5f93629feef228a66aed https://www.encodeproject.org/files/ENCFF113AKA/@@download/ENCFF113AKA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF387MFJ bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 2 ENCFF031XNE, ENCFF203ABR 6724748 ENCODE Processing Pipeline 0a78df47cbdc86d8067f108c503904c7 https://www.encodeproject.org/files/ENCFF387MFJ/@@download/ENCFF387MFJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF105NHW bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6851081 ENCODE Processing Pipeline 3e1274b21839788d9b813acfac2a5dfe https://www.encodeproject.org/files/ENCFF105NHW/@@download/ENCFF105NHW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002NNQ bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 5669054 ENCODE Processing Pipeline f6cd593476efa8c5c75daf455dae72c3 https://www.encodeproject.org/files/ENCFF002NNQ/@@download/ENCFF002NNQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF981TNW bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 2 ENCFF077SLS, ENCFF943PEE 5403664 ENCODE Processing Pipeline 6d4779a856d29b4fdebf5465a2a6bd46 https://www.encodeproject.org/files/ENCFF981TNW/@@download/ENCFF981TNW.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF592NPO bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF629GPG 6696785 ENCODE Processing Pipeline 3bf7c82e47bfdb9fc4aa567f3b6321da https://www.encodeproject.org/files/ENCFF592NPO/@@download/ENCFF592NPO.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF547QMS bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF269EAD 7104313 ENCODE Processing Pipeline 4b45735c8984edb6cb159083cf179107 https://www.encodeproject.org/files/ENCFF547QMS/@@download/ENCFF547QMS.bed.gz hg19 released ENCFF704TBE bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 6296385 ENCODE Processing Pipeline 83f933092541f32cefad10061ea61bad https://www.encodeproject.org/files/ENCFF704TBE/@@download/ENCFF704TBE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF196BYO bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 2 ENCFF834TUP, ENCFF894UKH 7190905 ENCODE Processing Pipeline 384d7721ceedfc6c87bc7fdbba81a592 https://www.encodeproject.org/files/ENCFF196BYO/@@download/ENCFF196BYO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF814THZ bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 2 ENCFF111YNK, ENCFF447KVS, ENCFF823USR 6904856 ENCODE Processing Pipeline 88028f7095d6185b0d0cad14b6a8a77d https://www.encodeproject.org/files/ENCFF814THZ/@@download/ENCFF814THZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF692CDD bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF933BWH 6267140 ENCODE Processing Pipeline 41225965f4413d81312d7cca6e546e21 https://www.encodeproject.org/files/ENCFF692CDD/@@download/ENCFF692CDD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF685WLQ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 5975222 ENCODE Processing Pipeline e1a4eb0ab7cac001a530003ac856e94e https://www.encodeproject.org/files/ENCFF685WLQ/@@download/ENCFF685WLQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF793TAZ bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738KYR 7141361 ENCODE Processing Pipeline b58ab98a60822b8bb31fed0c10388cb7 https://www.encodeproject.org/files/ENCFF793TAZ/@@download/ENCFF793TAZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF380RMA bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 6789390 ENCODE Processing Pipeline 3e88a974bac6cd6198dc1f3be445c88e https://www.encodeproject.org/files/ENCFF380RMA/@@download/ENCFF380RMA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF437VMK bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF226CEN, ENCFF999EQI 5534124 ENCODE Processing Pipeline 68dba4cda1e0af055867c5657413b4a2 https://www.encodeproject.org/files/ENCFF437VMK/@@download/ENCFF437VMK.bed.gz hg19 released borderline replicate concordance ENCFF539MLU bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF289DJO, ENCFF815IAY 4349535 ENCODE Processing Pipeline 2a8915c9747200df2bcf044c32f91d18 https://www.encodeproject.org/files/ENCFF539MLU/@@download/ENCFF539MLU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF040JIX bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF050NKD 6678531 ENCODE Processing Pipeline 1eceb155397a8fdbb45fbee0b4bbd89e https://www.encodeproject.org/files/ENCFF040JIX/@@download/ENCFF040JIX.bed.gz hg19 released ENCFF204ZSE bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF787PIX 6839707 ENCODE Processing Pipeline b5a0136170a4633f73b54ca8cfa23117 https://www.encodeproject.org/files/ENCFF204ZSE/@@download/ENCFF204ZSE.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF747HUJ bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 2 ENCFF927XWG 5963569 ENCODE Processing Pipeline faa10e17b7d0cbfc92df30cb1d24f4be https://www.encodeproject.org/files/ENCFF747HUJ/@@download/ENCFF747HUJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF179ZRO bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF807EAV 6491482 ENCODE Processing Pipeline 627d32cbe0d4be7348cf21a001b0cb68 https://www.encodeproject.org/files/ENCFF179ZRO/@@download/ENCFF179ZRO.bed.gz hg19 released ENCFF826ULZ bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF366VQS, ENCFF801WHL, ENCFF923EBC 7198175 ENCODE Processing Pipeline 4c617dbf8ab0957b2b8643b5502c09f3 https://www.encodeproject.org/files/ENCFF826ULZ/@@download/ENCFF826ULZ.bed.gz hg19 released NTR biosample ENCFF276RMO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 6744690 ENCODE Processing Pipeline f0b3cb8c1493d48a88cf0b30b72a08ff https://www.encodeproject.org/files/ENCFF276RMO/@@download/ENCFF276RMO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF751KOC bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF245NUX 6088672 ENCODE Processing Pipeline cac54d736e79735d480362f52914ce41 https://www.encodeproject.org/files/ENCFF751KOC/@@download/ENCFF751KOC.bed.gz hg19 released borderline replicate concordance ENCFF465IOZ bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 7050446 ENCODE Processing Pipeline b37e92be4f3a447e40d01464b356c013 https://www.encodeproject.org/files/ENCFF465IOZ/@@download/ENCFF465IOZ.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF251IQI bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 2 ENCFF583FAG, ENCFF615FQC 5908527 ENCODE Processing Pipeline a4aba28356eac8887694b326817848ec https://www.encodeproject.org/files/ENCFF251IQI/@@download/ENCFF251IQI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF593TJL bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF172XZA, ENCFF317BEW, ENCFF843IXX 6528837 ENCODE Processing Pipeline 47a51033c2938c7e1006eadcc3726280 https://www.encodeproject.org/files/ENCFF593TJL/@@download/ENCFF593TJL.bed.gz hg19 released mild to moderate bottlenecking ENCFF025JML bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF742OQD, ENCFF823USR 7061953 ENCODE Processing Pipeline de92bf5c409750790eb42a43548eaaf7 https://www.encodeproject.org/files/ENCFF025JML/@@download/ENCFF025JML.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF828CXZ bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 2 ENCFF051LWI, ENCFF669LOS 6607514 ENCODE Processing Pipeline ffcb3b639ed32f8755e3898c3bbebd6f https://www.encodeproject.org/files/ENCFF828CXZ/@@download/ENCFF828CXZ.bed.gz hg19 released antibody characterized with exemption ENCFF045FYZ bed narrowPeak peaks ENCSR985MYI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF114-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF859OWC 6734165 ENCODE Processing Pipeline d914e1978e5a81447f2803b0744b43ea https://www.encodeproject.org/files/ENCFF045FYZ/@@download/ENCFF045FYZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF610HTV bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF741WIH, ENCFF823USR 6909678 ENCODE Processing Pipeline e76170fcf20e7c8766dd4509b4c36b58 https://www.encodeproject.org/files/ENCFF610HTV/@@download/ENCFF610HTV.bed.gz hg19 released mild to moderate bottlenecking ENCFF622THV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF546AFS, ENCFF705ZEH 4834476 ENCODE Processing Pipeline a78791463de6509ad4f36b0cacb53445 https://www.encodeproject.org/files/ENCFF622THV/@@download/ENCFF622THV.bed.gz hg19 released low read length, low read depth ENCFF128OKK bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239POZ, ENCFF609FMU 6377846 ENCODE Processing Pipeline 02e42c7712ffde272e651acb9b49a7ab https://www.encodeproject.org/files/ENCFF128OKK/@@download/ENCFF128OKK.bed.gz hg19 released experiment not submitted to GEO ENCFF978HRR bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF654ZRK, ENCFF823USR 6539705 ENCODE Processing Pipeline 05d47f16d247a0449ba74ddc1fa67e1b https://www.encodeproject.org/files/ENCFF978HRR/@@download/ENCFF978HRR.bed.gz hg19 released ENCFF253PLF bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 6719475 ENCODE Processing Pipeline f3894190ca5645019fbfae164354c932 https://www.encodeproject.org/files/ENCFF253PLF/@@download/ENCFF253PLF.bed.gz hg19 released borderline replicate concordance ENCFF859ZGV bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX 6777667 ENCODE Processing Pipeline 88c7ef5588f5f47b0933c6942f962542 https://www.encodeproject.org/files/ENCFF859ZGV/@@download/ENCFF859ZGV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF886RMX bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 5978243 ENCODE Processing Pipeline 09ae9d17e078b91aaf356d04a97ab953 https://www.encodeproject.org/files/ENCFF886RMX/@@download/ENCFF886RMX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF703AYW bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 2 ENCFF500EQZ, ENCFF743FRI 6754100 ENCODE Processing Pipeline d8dd05a8c34d3e187849ab51b732871e https://www.encodeproject.org/files/ENCFF703AYW/@@download/ENCFF703AYW.bed.gz hg19 released missing genetic modification characterization ENCFF100HDM bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF729OTK, ENCFF823USR 6698226 ENCODE Processing Pipeline 72f03ed135282e066c247a4785adffeb https://www.encodeproject.org/files/ENCFF100HDM/@@download/ENCFF100HDM.bed.gz hg19 released ENCFF486RQW bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF163ARJ 6476407 ENCODE Processing Pipeline fbfee1e1f572133bd719fcf43a6ed903 https://www.encodeproject.org/files/ENCFF486RQW/@@download/ENCFF486RQW.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF021CLN bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 2 ENCFF004VBD, ENCFF137WND 5666894 ENCODE Processing Pipeline 27517a3099699e324514f9bce53e8422 https://www.encodeproject.org/files/ENCFF021CLN/@@download/ENCFF021CLN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF763UFC bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF367UIT 7147888 ENCODE Processing Pipeline 50903e83e12dbeb447c95ecffa403841 https://www.encodeproject.org/files/ENCFF763UFC/@@download/ENCFF763UFC.bed.gz hg19 released ENCFF865UXS bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ 7108274 ENCODE Processing Pipeline 20668413d6068304e16ec0c1b2f14427 https://www.encodeproject.org/files/ENCFF865UXS/@@download/ENCFF865UXS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF617PCO bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF370OOM, ENCFF843IXX 6969558 ENCODE Processing Pipeline 168127b18f6de59061bd95ebc54d50f2 https://www.encodeproject.org/files/ENCFF617PCO/@@download/ENCFF617PCO.bed.gz hg19 released ENCFF456OOM bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV 6854542 ENCODE Processing Pipeline e6e4d52162a7d18e475756a33fdeb8b6 https://www.encodeproject.org/files/ENCFF456OOM/@@download/ENCFF456OOM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF289MUX bed narrowPeak peaks ENCSR696HTM ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 2 ENCFF606OCK, ENCFF679FAU 5272939 ENCODE Processing Pipeline a899e3c199ed08d957e2af7229b6c382 https://www.encodeproject.org/files/ENCFF289MUX/@@download/ENCFF289MUX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF531FOV bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 5986594 ENCODE Processing Pipeline 54a5acef1203551a9692d93b280d8fca https://www.encodeproject.org/files/ENCFF531FOV/@@download/ENCFF531FOV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF384FEX bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 5954915 ENCODE Processing Pipeline cd518e0e1b3e7bf35d91cf484ccb44f1 https://www.encodeproject.org/files/ENCFF384FEX/@@download/ENCFF384FEX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF535WCX bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF770KIN, ENCFF823USR 7208747 ENCODE Processing Pipeline 5763392383dc2aef3852b66e976b6271 https://www.encodeproject.org/files/ENCFF535WCX/@@download/ENCFF535WCX.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF471IMS bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF358VCI 7279418 ENCODE Processing Pipeline 8162de62da9eff517fa138fdb1983ec8 https://www.encodeproject.org/files/ENCFF471IMS/@@download/ENCFF471IMS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF360GCE bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 2 ENCFF642OQJ, ENCFF831FLE 6900000 ENCODE Processing Pipeline 17198703d90150d4dc8dd66cdc74f495 https://www.encodeproject.org/files/ENCFF360GCE/@@download/ENCFF360GCE.bed.gz hg19 released missing genetic modification characterization ENCFF367IRL bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF764RCL 6638894 ENCODE Processing Pipeline 667ca9cb6a3cab61aeecbef471fef6e8 https://www.encodeproject.org/files/ENCFF367IRL/@@download/ENCFF367IRL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF307MIA bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 2 ENCFF013WTE, ENCFF496ANK 6173968 ENCODE Processing Pipeline 15113e25626fbfbdb4bc89e7b87c6637 https://www.encodeproject.org/files/ENCFF307MIA/@@download/ENCFF307MIA.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF405JCS bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF735BIE 7299340 ENCODE Processing Pipeline 8fbb2add6087a350870389c60b7b303f https://www.encodeproject.org/files/ENCFF405JCS/@@download/ENCFF405JCS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF733BCO bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF364FHT 6433432 ENCODE Processing Pipeline df054e85b6b3638edd1c38698fa4235c https://www.encodeproject.org/files/ENCFF733BCO/@@download/ENCFF733BCO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF367KYN bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 6402393 ENCODE Processing Pipeline 4b7df7883c2538296b947e03cbc3ab8d https://www.encodeproject.org/files/ENCFF367KYN/@@download/ENCFF367KYN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF977TIL bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7286155 ENCODE Processing Pipeline 25404fa0dc11a561d7e6993810a6909b https://www.encodeproject.org/files/ENCFF977TIL/@@download/ENCFF977TIL.bed.gz hg19 released mild to moderate bottlenecking ENCFF701KPJ bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 2 ENCFF104USR, ENCFF203ABR 6393381 ENCODE Processing Pipeline d1a2ec724e0581eff34cc052dd5e9700 https://www.encodeproject.org/files/ENCFF701KPJ/@@download/ENCFF701KPJ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF321CVZ bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF998QTY 5704291 ENCODE Processing Pipeline 3a4a420538d55f87d738e99cc9182c37 https://www.encodeproject.org/files/ENCFF321CVZ/@@download/ENCFF321CVZ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF939NVJ bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF163GGL, ENCFF856NHW, ENCFF959SRT 7380980 ENCODE Processing Pipeline 430d90feeb8cae901aa113f765b5c2f2 https://www.encodeproject.org/files/ENCFF939NVJ/@@download/ENCFF939NVJ.bed.gz hg19 released NTR biosample ENCFF978SSL bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ 5968427 ENCODE Processing Pipeline 25f52f43840b144d07c960e5eafe18e9 https://www.encodeproject.org/files/ENCFF978SSL/@@download/ENCFF978SSL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF510TYC bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 5371872 ENCODE Processing Pipeline 594c0369b32afa4408986dc95524133a https://www.encodeproject.org/files/ENCFF510TYC/@@download/ENCFF510TYC.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF925ZGX bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 4985334 ENCODE Processing Pipeline 977767272dab7b9267fce5f771334049 https://www.encodeproject.org/files/ENCFF925ZGX/@@download/ENCFF925ZGX.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF313HJO bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 2 ENCFF252BPD, ENCFF847WWC 6066355 ENCODE Processing Pipeline b487f0b2226a0251fa87c44d3d0f3897 https://www.encodeproject.org/files/ENCFF313HJO/@@download/ENCFF313HJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF603XIY bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 2 ENCFF106KDN, ENCFF160VXC, ENCFF834TUP 6995126 ENCODE Processing Pipeline 14fccdac275608c4c8aa56ebb80e9e48 https://www.encodeproject.org/files/ENCFF603XIY/@@download/ENCFF603XIY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF688MMW bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 2 ENCFF497VZQ, ENCFF563IAT 5858657 ENCODE Processing Pipeline b9c42852aa5db77e1422ac3c1df2bbec https://www.encodeproject.org/files/ENCFF688MMW/@@download/ENCFF688MMW.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF014ZNK bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 7084035 ENCODE Processing Pipeline 77ff4cb4f03880759fbea7159b5e1b9e https://www.encodeproject.org/files/ENCFF014ZNK/@@download/ENCFF014ZNK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF132EAK bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF179UQW 6422787 ENCODE Processing Pipeline b4e3159934e135933a0349df7d2441c8 https://www.encodeproject.org/files/ENCFF132EAK/@@download/ENCFF132EAK.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF704PXA bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 2 ENCFF182WHU, ENCFF688OTD 7064913 ENCODE Processing Pipeline d110fd83e49ea7a5656e6a942ec01d17 https://www.encodeproject.org/files/ENCFF704PXA/@@download/ENCFF704PXA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF789HHG bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 4774722 ENCODE Processing Pipeline 2b980e8a647d156579335201a39ef984 https://www.encodeproject.org/files/ENCFF789HHG/@@download/ENCFF789HHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF855PEP bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF358IWC 6627792 ENCODE Processing Pipeline 622c25fdbfe37b01dfb21de907e24a14 https://www.encodeproject.org/files/ENCFF855PEP/@@download/ENCFF855PEP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF225EQY bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 2 ENCFF040FFN, ENCFF127KUO 7241061 ENCODE Processing Pipeline a13201e6f9f9a88ae3150af208eea6db https://www.encodeproject.org/files/ENCFF225EQY/@@download/ENCFF225EQY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF704XPH bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF894SSP 6704513 ENCODE Processing Pipeline b208cee7af26546bde52a39ebdcbe2de https://www.encodeproject.org/files/ENCFF704XPH/@@download/ENCFF704XPH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF772XDS bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 2 ENCFF220WDD, ENCFF736LGI 6670751 ENCODE Processing Pipeline b7b315993188bf1abc678d70b38144eb https://www.encodeproject.org/files/ENCFF772XDS/@@download/ENCFF772XDS.bed.gz hg19 released missing genetic modification characterization ENCFF309FGP bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF425VIX, ENCFF572OMD 6445090 ENCODE Processing Pipeline 644311b48adc7dac81b450b4c99dcd2a https://www.encodeproject.org/files/ENCFF309FGP/@@download/ENCFF309FGP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF378HNS bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 2 ENCFF176VLC, ENCFF203ABR 6815754 ENCODE Processing Pipeline ede3ee264b1da058a6430fc59b8068ff https://www.encodeproject.org/files/ENCFF378HNS/@@download/ENCFF378HNS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF780MVK bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF279BTT 6594136 ENCODE Processing Pipeline 1ed40869f9d54b9da00cfb5799464aa6 https://www.encodeproject.org/files/ENCFF780MVK/@@download/ENCFF780MVK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF654CCR bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 2 ENCFF140YFE 6446754 ENCODE Processing Pipeline 9063deb57c96f58e6ab3fd4e77d163be https://www.encodeproject.org/files/ENCFF654CCR/@@download/ENCFF654CCR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF720MSK bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF851OMU 5278336 ENCODE Processing Pipeline f7e369c1ef6322eb8a5914d6b9f6a4bc https://www.encodeproject.org/files/ENCFF720MSK/@@download/ENCFF720MSK.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF704JVW bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF089QXR, ENCFF234MAA 6504853 ENCODE Processing Pipeline b407c5599965ac2ceab7fce2ba9086db https://www.encodeproject.org/files/ENCFF704JVW/@@download/ENCFF704JVW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF624UAC bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF154IGF 5027352 ENCODE Processing Pipeline b25430a0729029142608b20b8153f273 https://www.encodeproject.org/files/ENCFF624UAC/@@download/ENCFF624UAC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF658SVX bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF203ABU, ENCFF705ZEH 5319820 ENCODE Processing Pipeline 27097323d9c4e72c0cfc64ffabfee66d https://www.encodeproject.org/files/ENCFF658SVX/@@download/ENCFF658SVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF215JJY bed narrowPeak peaks ENCSR154GUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 2 ENCFF340ZEP, ENCFF750HDH 6353953 ENCODE Processing Pipeline 0cebf17361f2bd7737eec6734bf38f52 https://www.encodeproject.org/files/ENCFF215JJY/@@download/ENCFF215JJY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF268UTN bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF738WIY 6950099 ENCODE Processing Pipeline 75cf7572bfed1e5a80a131daf9d885d9 https://www.encodeproject.org/files/ENCFF268UTN/@@download/ENCFF268UTN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF215GXV bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF249WJP 6867836 ENCODE Processing Pipeline 5af186408e02febbaefb4e4ffed8e65a https://www.encodeproject.org/files/ENCFF215GXV/@@download/ENCFF215GXV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF513RYM bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 7019864 ENCODE Processing Pipeline 8a4ba87bbb665cd7592881e04722644b https://www.encodeproject.org/files/ENCFF513RYM/@@download/ENCFF513RYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF603BTL bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 2 ENCFF503YHD, ENCFF783CXK 7009038 ENCODE Processing Pipeline 4d3412ad428852982210ca66bd1e37a2 https://www.encodeproject.org/files/ENCFF603BTL/@@download/ENCFF603BTL.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF855RKW bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 6488095 ENCODE Processing Pipeline d4dfe31150b5ecc1afaad5c0b16c4845 https://www.encodeproject.org/files/ENCFF855RKW/@@download/ENCFF855RKW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF250VQN bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 2 ENCFF488CVL, ENCFF744LSD 6611423 ENCODE Processing Pipeline 2b3b093652493683ee15e2cad32627d2 https://www.encodeproject.org/files/ENCFF250VQN/@@download/ENCFF250VQN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF150YMV bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 6855199 ENCODE Processing Pipeline 299024ce5c68aeb309d8c186b174ff61 https://www.encodeproject.org/files/ENCFF150YMV/@@download/ENCFF150YMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF715YVZ bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340TMD 6174699 ENCODE Processing Pipeline 8d96c17be790fec7b3c2c0ee9276e0b9 https://www.encodeproject.org/files/ENCFF715YVZ/@@download/ENCFF715YVZ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF642BLW bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF215XQU, ENCFF705NOL 6722946 ENCODE Processing Pipeline b812d2685d9b6e21627f6dae26f409ad https://www.encodeproject.org/files/ENCFF642BLW/@@download/ENCFF642BLW.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF260RNL bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 6032960 ENCODE Processing Pipeline f8148af9c2ae9084fb7a592c87363903 https://www.encodeproject.org/files/ENCFF260RNL/@@download/ENCFF260RNL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF989VGU bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF011BPU, ENCFF096KAF 6791978 ENCODE Processing Pipeline f7c26fde17309370db830462d1f2532f https://www.encodeproject.org/files/ENCFF989VGU/@@download/ENCFF989VGU.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF138HSD bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF408VAT, ENCFF447KVS, ENCFF823USR 7062054 ENCODE Processing Pipeline 630988f78424aeb9b95a283138eab75c https://www.encodeproject.org/files/ENCFF138HSD/@@download/ENCFF138HSD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF162YHD bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 6911168 ENCODE Processing Pipeline 5e8431bc30b30d1ab3f1b30703317636 https://www.encodeproject.org/files/ENCFF162YHD/@@download/ENCFF162YHD.bed.gz hg19 released missing genetic modification characterization ENCFF650FDP bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF130LXW 6923443 ENCODE Processing Pipeline c874b04801d74d8383d1d427e878cd4d https://www.encodeproject.org/files/ENCFF650FDP/@@download/ENCFF650FDP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF263ZII bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF723GWC 6617388 ENCODE Processing Pipeline ffdd6e9d28d134733d21963f1ebb3200 https://www.encodeproject.org/files/ENCFF263ZII/@@download/ENCFF263ZII.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF186ZTM bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF410VAL 7247772 ENCODE Processing Pipeline f77b8a25bb90d17f0e6ece643dea9963 https://www.encodeproject.org/files/ENCFF186ZTM/@@download/ENCFF186ZTM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF253NDQ bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL 5388530 ENCODE Processing Pipeline 620c5eaf1a861d712d3399bc8cbe4dd1 https://www.encodeproject.org/files/ENCFF253NDQ/@@download/ENCFF253NDQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF966NTL bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 2 ENCFF069GGB, ENCFF941TZZ 6885626 ENCODE Processing Pipeline 95251238f90a925144754906d4a9c29d https://www.encodeproject.org/files/ENCFF966NTL/@@download/ENCFF966NTL.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF374VVK bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 2 ENCFF614KAI, ENCFF847YWA 5887321 ENCODE Processing Pipeline 0574365e7173847c27054ce4d978e898 https://www.encodeproject.org/files/ENCFF374VVK/@@download/ENCFF374VVK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF550URY bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF881DRR 4685837 ENCODE Processing Pipeline b560ca5254c568663b11e62a65ab9d16 https://www.encodeproject.org/files/ENCFF550URY/@@download/ENCFF550URY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF189NGD bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF837QKV 4759023 ENCODE Processing Pipeline 886ecf5439e7455261cced5fc2c31058 https://www.encodeproject.org/files/ENCFF189NGD/@@download/ENCFF189NGD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF892LCQ bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF031HZQ 6821619 ENCODE Processing Pipeline 459c0634df3efad1c60b1cea80eccc9c https://www.encodeproject.org/files/ENCFF892LCQ/@@download/ENCFF892LCQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF592UUW bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF651ADF 6731725 ENCODE Processing Pipeline 2b84d3283000abbba8587eb750d7fe29 https://www.encodeproject.org/files/ENCFF592UUW/@@download/ENCFF592UUW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF129XQZ bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF683LTQ 6796320 ENCODE Processing Pipeline 8415f37ef135ea912bbd84f5e473f873 https://www.encodeproject.org/files/ENCFF129XQZ/@@download/ENCFF129XQZ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF916ARR bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF303UMK, ENCFF999EQI 6109059 ENCODE Processing Pipeline 6ffc12ddb7cfa214844744dceb9a59c0 https://www.encodeproject.org/files/ENCFF916ARR/@@download/ENCFF916ARR.bed.gz hg19 released borderline replicate concordance ENCFF193MSK bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF713XOH 6563800 ENCODE Processing Pipeline 7d95b8c9e2794e78e81e6e4a4954270c https://www.encodeproject.org/files/ENCFF193MSK/@@download/ENCFF193MSK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF935HJA bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF364DBG 5792815 ENCODE Processing Pipeline 4bde03a3b8413208a0a2a9c40a44c638 https://www.encodeproject.org/files/ENCFF935HJA/@@download/ENCFF935HJA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF888ZSX bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF789MAE 7004253 ENCODE Processing Pipeline fe69473eab30bfaadb16e8913525c417 https://www.encodeproject.org/files/ENCFF888ZSX/@@download/ENCFF888ZSX.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF001XPM bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 768874 John Stamatoyannopoulos, UW db6a022f65cca2f4255919a9a665af29 https://www.encodeproject.org/files/ENCFF001XPM/@@download/ENCFF001XPM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF559IXF bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 3921477 ENCODE Processing Pipeline d2f733fe91eb768e2544200a7b2f1c49 https://www.encodeproject.org/files/ENCFF559IXF/@@download/ENCFF559IXF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF625VEV bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF007CIX, ENCFF641CEP 4967083 ENCODE Processing Pipeline 757d5f0a5458cf6810ed9912b8eec445 https://www.encodeproject.org/files/ENCFF625VEV/@@download/ENCFF625VEV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF990DZB bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 2 ENCFF160VXC, ENCFF407LUN 6755474 ENCODE Processing Pipeline 47b3c1de68cdf273fd28f9de5cab4719 https://www.encodeproject.org/files/ENCFF990DZB/@@download/ENCFF990DZB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF478HJZ bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 2 ENCFF002JBN, ENCFF203ABR 6793978 ENCODE Processing Pipeline 6113f8155a3ff1a367aeefca94b33c59 https://www.encodeproject.org/files/ENCFF478HJZ/@@download/ENCFF478HJZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308KQO bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF665CMT 7145254 ENCODE Processing Pipeline 8ca206784639fb96754eb5ccbd07ed58 https://www.encodeproject.org/files/ENCFF308KQO/@@download/ENCFF308KQO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF818OAI bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF193OQZ 6068734 ENCODE Processing Pipeline 157fc7406e7fb3b443234d6114ec83a1 https://www.encodeproject.org/files/ENCFF818OAI/@@download/ENCFF818OAI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF938OWG bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF008NUZ, ENCFF447KVS, ENCFF823USR 6973358 ENCODE Processing Pipeline 7fb325e570a491b88cfd776e14a00fa7 https://www.encodeproject.org/files/ENCFF938OWG/@@download/ENCFF938OWG.bed.gz hg19 released ENCFF721DKV bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 5331822 ENCODE Processing Pipeline 54d16af622c98713d139299498e6adb2 https://www.encodeproject.org/files/ENCFF721DKV/@@download/ENCFF721DKV.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF952TOJ bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF363LYG 7086320 ENCODE Processing Pipeline 3b06e12ab45d3f5d8fe94f1ff32a01f7 https://www.encodeproject.org/files/ENCFF952TOJ/@@download/ENCFF952TOJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF549VOY bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 2 ENCFF494NSZ, ENCFF834TUP 6317672 ENCODE Processing Pipeline 509ed1052051da43fe4fb739e335d00f https://www.encodeproject.org/files/ENCFF549VOY/@@download/ENCFF549VOY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF107SGI bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 4674325 ENCODE Processing Pipeline 418758f943c545f62ba0589e070eb71f https://www.encodeproject.org/files/ENCFF107SGI/@@download/ENCFF107SGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF028UBX bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF288CMG, ENCFF529BVI, ENCFF772FBN 6983689 ENCODE Processing Pipeline 11f1057a378148b3658bc79e67df2436 https://www.encodeproject.org/files/ENCFF028UBX/@@download/ENCFF028UBX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF934HUV bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF628LZV, ENCFF823USR 6849042 ENCODE Processing Pipeline 7f5463b70d7a1a1e597de7476a249f79 https://www.encodeproject.org/files/ENCFF934HUV/@@download/ENCFF934HUV.bed.gz hg19 released file validation error mismatched file status ENCFF091ECC bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF586HZR 6778179 ENCODE Processing Pipeline 44d512a6e130c09fc1ee44b1c2d4a7c1 https://www.encodeproject.org/files/ENCFF091ECC/@@download/ENCFF091ECC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF732OEZ bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF324LWS 6658320 ENCODE Processing Pipeline 3b4dfd855b91edc526c9d5b34f954c1d https://www.encodeproject.org/files/ENCFF732OEZ/@@download/ENCFF732OEZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF738DAC bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF256NAK 7074107 ENCODE Processing Pipeline 31f2a519963582541a7a19654e782749 https://www.encodeproject.org/files/ENCFF738DAC/@@download/ENCFF738DAC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF248AZH bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 2 ENCFF621GUP, ENCFF879OQC 4746442 ENCODE Processing Pipeline 920cb17166e327ea21f13d89051b2cd1 https://www.encodeproject.org/files/ENCFF248AZH/@@download/ENCFF248AZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF948KJG bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN 7040849 ENCODE Processing Pipeline f888673eb04bb67b9a39cdfcb5bc7dab https://www.encodeproject.org/files/ENCFF948KJG/@@download/ENCFF948KJG.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF995XHS bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 2 ENCFF165PBN, ENCFF469DXQ, ENCFF705NOL 6836670 ENCODE Processing Pipeline 22688dc01e004ba4bf430b7fe025ce63 https://www.encodeproject.org/files/ENCFF995XHS/@@download/ENCFF995XHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF057RCM bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF078DNG 5951493 ENCODE Processing Pipeline a528456c8cd4373a6d1e527b8e668908 https://www.encodeproject.org/files/ENCFF057RCM/@@download/ENCFF057RCM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF711YJV bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF970QPM 6383302 ENCODE Processing Pipeline 80ad69dffe8678578ff88f1a5db8508f https://www.encodeproject.org/files/ENCFF711YJV/@@download/ENCFF711YJV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF253XIY bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF541OLW 7069527 ENCODE Processing Pipeline 62dfb3ffb12006a6978bb9b2ad4cd6dd https://www.encodeproject.org/files/ENCFF253XIY/@@download/ENCFF253XIY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF844VMC bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF771VVI 6007450 ENCODE Processing Pipeline 7fdebc2a00b17375d72c9ac64ab99956 https://www.encodeproject.org/files/ENCFF844VMC/@@download/ENCFF844VMC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF459AGI bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX 6911516 ENCODE Processing Pipeline 1a845ed94bfe8693ff218e902f99088a https://www.encodeproject.org/files/ENCFF459AGI/@@download/ENCFF459AGI.bed.gz hg19 released antibody characterized with exemption ENCFF244XAR bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 2 ENCFF242FHJ, ENCFF614AZS 7030599 ENCODE Processing Pipeline 09abb517586ae010888de294cb016b61 https://www.encodeproject.org/files/ENCFF244XAR/@@download/ENCFF244XAR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF873ZUQ bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF233IID 6929067 ENCODE Processing Pipeline e474c90e1cb307a33e2f01fe1d28d6e2 https://www.encodeproject.org/files/ENCFF873ZUQ/@@download/ENCFF873ZUQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF220RNG bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 2 ENCFF107MLR, ENCFF252CHQ 6606473 ENCODE Processing Pipeline 43932076034d45a823611b45b7834918 https://www.encodeproject.org/files/ENCFF220RNG/@@download/ENCFF220RNG.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF697BKG bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL 7101030 ENCODE Processing Pipeline 54492898f66cce12a1e6588aa57d738d https://www.encodeproject.org/files/ENCFF697BKG/@@download/ENCFF697BKG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF567MYL bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF495BAQ 6613574 ENCODE Processing Pipeline 5e2e7c9dc4d2243da1d551e253fc9973 https://www.encodeproject.org/files/ENCFF567MYL/@@download/ENCFF567MYL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF190DZM bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF014YFY, ENCFF182WHU 7208367 ENCODE Processing Pipeline ad68b0dd2aa7a2067cbc04a10bdfec05 https://www.encodeproject.org/files/ENCFF190DZM/@@download/ENCFF190DZM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF747RWF bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 4261011 ENCODE Processing Pipeline fdbc4961344222b0867324f70265bb24 https://www.encodeproject.org/files/ENCFF747RWF/@@download/ENCFF747RWF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF460NDF bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF969RVW 4492414 ENCODE Processing Pipeline 26c8a50a84149bebdc506ed856cefa4e https://www.encodeproject.org/files/ENCFF460NDF/@@download/ENCFF460NDF.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF531NQP bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF306NYS, ENCFF834TUP 5971548 ENCODE Processing Pipeline 8e9c11a2ca840a085432e43460da5b42 https://www.encodeproject.org/files/ENCFF531NQP/@@download/ENCFF531NQP.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF662MTH bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 2 ENCFF048WFD, ENCFF165PBN, ENCFF705NOL 6983973 ENCODE Processing Pipeline 3c1f6e7d695c646be568dce7191b5d5c https://www.encodeproject.org/files/ENCFF662MTH/@@download/ENCFF662MTH.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF775HMC bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF970AJY 6879166 ENCODE Processing Pipeline 185e0a6ff0f38ec89241fba44699e571 https://www.encodeproject.org/files/ENCFF775HMC/@@download/ENCFF775HMC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF455HXY bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 7179191 ENCODE Processing Pipeline 6037a0d0b1073ae8d233714b1521e9be https://www.encodeproject.org/files/ENCFF455HXY/@@download/ENCFF455HXY.bed.gz hg19 released mild to moderate bottlenecking ENCFF267RGU bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 7085717 ENCODE Processing Pipeline 86e12d6a6279d291ed62cc05f1c9411f https://www.encodeproject.org/files/ENCFF267RGU/@@download/ENCFF267RGU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF595MZR bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF345DHS 7264830 ENCODE Processing Pipeline a3b36dc6811538d68376d3d9434a288d https://www.encodeproject.org/files/ENCFF595MZR/@@download/ENCFF595MZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF383SFZ bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 2 ENCFF192DWU, ENCFF999EQI 6208081 ENCODE Processing Pipeline 9209eca9611e254b4ffa882ebf11729a https://www.encodeproject.org/files/ENCFF383SFZ/@@download/ENCFF383SFZ.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF325RLP bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF213KHA 6866963 ENCODE Processing Pipeline a8a4448f38f187792e0db020674c2afc https://www.encodeproject.org/files/ENCFF325RLP/@@download/ENCFF325RLP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF598WYS bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF909EWL 6114803 ENCODE Processing Pipeline cb0a218c5effcdb427fad58af62c1826 https://www.encodeproject.org/files/ENCFF598WYS/@@download/ENCFF598WYS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF073SON bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF161TEI 6480275 ENCODE Processing Pipeline 9185891cd09a85db98afb135c5c5b2b5 https://www.encodeproject.org/files/ENCFF073SON/@@download/ENCFF073SON.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF909BKU bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF236KFT 6972294 ENCODE Processing Pipeline 93b1935cdd8ee54a5ad25aab05ca9f37 https://www.encodeproject.org/files/ENCFF909BKU/@@download/ENCFF909BKU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF019DNW bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF418WTW 6061843 ENCODE Processing Pipeline 309b53131eeb453b455e2c147d4b2bb8 https://www.encodeproject.org/files/ENCFF019DNW/@@download/ENCFF019DNW.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF302KGG bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF608GXH, ENCFF999EQI 6513399 ENCODE Processing Pipeline 281d828127b433784466c4edb4023bdf https://www.encodeproject.org/files/ENCFF302KGG/@@download/ENCFF302KGG.bed.gz hg19 released antibody characterized with exemption ENCFF777KBI bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF026ZLM 6427556 ENCODE Processing Pipeline 29ed32951ac8dc7a311b56a4a747ac38 https://www.encodeproject.org/files/ENCFF777KBI/@@download/ENCFF777KBI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF641QDG bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF897SYI 6341700 ENCODE Processing Pipeline 9a5930f8bcaae45765283ccbb2fc9d9d https://www.encodeproject.org/files/ENCFF641QDG/@@download/ENCFF641QDG.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF336ENE bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF658SBL 7089955 ENCODE Processing Pipeline a85121c006d7fcb3f709f207eb39e260 https://www.encodeproject.org/files/ENCFF336ENE/@@download/ENCFF336ENE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF710KKZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 6525420 ENCODE Processing Pipeline 8101449533063d4491dcd437c4d4400e https://www.encodeproject.org/files/ENCFF710KKZ/@@download/ENCFF710KKZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF609GIU bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF224CNS 6770293 ENCODE Processing Pipeline 68d6a4e29a6ac0f90767725f727fcede https://www.encodeproject.org/files/ENCFF609GIU/@@download/ENCFF609GIU.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF375IKN bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF096KCE, ENCFF534BBH 5532763 ENCODE Processing Pipeline 8895fe65a5a28bf6f135f6176109f8cb https://www.encodeproject.org/files/ENCFF375IKN/@@download/ENCFF375IKN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF890VHF bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF049MPQ, ENCFF630HPE 6593313 ENCODE Processing Pipeline b92e64a443c81bb6279e6a299af35052 https://www.encodeproject.org/files/ENCFF890VHF/@@download/ENCFF890VHF.bed.gz hg19 released ENCFF559FAT bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF940NHX 7012416 ENCODE Processing Pipeline 70cede5e9984baa825020a0a6cd1f2f7 https://www.encodeproject.org/files/ENCFF559FAT/@@download/ENCFF559FAT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF975UYT bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 6769806 ENCODE Processing Pipeline 1d5437af2fa6db05277da419a4a3e02d https://www.encodeproject.org/files/ENCFF975UYT/@@download/ENCFF975UYT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF830YCS bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 6824938 ENCODE Processing Pipeline 1f26fecef2e02649484455fc3cc1772f https://www.encodeproject.org/files/ENCFF830YCS/@@download/ENCFF830YCS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF034UND bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF922WUK 6910869 ENCODE Processing Pipeline 6c75bca3fc262c06974903c2a6c13dcb https://www.encodeproject.org/files/ENCFF034UND/@@download/ENCFF034UND.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF651MYL bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF784OML 6070841 ENCODE Processing Pipeline bce36ae0ca5ba42452121e0c5418c447 https://www.encodeproject.org/files/ENCFF651MYL/@@download/ENCFF651MYL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF311FOZ bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 2 ENCFF147YGB, ENCFF160VXC, ENCFF834TUP 7285652 ENCODE Processing Pipeline 1a0604f259a0b01e89094bf7f2d187be https://www.encodeproject.org/files/ENCFF311FOZ/@@download/ENCFF311FOZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF955QVX bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF354JYP 6746040 ENCODE Processing Pipeline 28b2acf3e6df1fca31b6793b67533d5e https://www.encodeproject.org/files/ENCFF955QVX/@@download/ENCFF955QVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF402FJT bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF041ENO 6889934 ENCODE Processing Pipeline 11bb442193c80549e3737446f44cca53 https://www.encodeproject.org/files/ENCFF402FJT/@@download/ENCFF402FJT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF494SRY bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 6674264 ENCODE Processing Pipeline 505cee6a36e8bd3c4031c86ccbe29baf https://www.encodeproject.org/files/ENCFF494SRY/@@download/ENCFF494SRY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF660UZA bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF838PTN 6545698 ENCODE Processing Pipeline 02e0e43a446a210717d03c4ac97ceb9c https://www.encodeproject.org/files/ENCFF660UZA/@@download/ENCFF660UZA.bed.gz hg19 released ENCFF367LDH bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF536BYQ, ENCFF812MYK, ENCFF831TJC 7180979 ENCODE Processing Pipeline 16b6624c22589f5ed5dca36bf77359dc https://www.encodeproject.org/files/ENCFF367LDH/@@download/ENCFF367LDH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF170DYF bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF217UCE, ENCFF596ZQI, ENCFF825CNQ 5840669 ENCODE Processing Pipeline fc3e3f597db96ebbb7d48ac3f240beb7 https://www.encodeproject.org/files/ENCFF170DYF/@@download/ENCFF170DYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF709QKK bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6002614 ENCODE Processing Pipeline 6dae0589750cc96542c538f115984196 https://www.encodeproject.org/files/ENCFF709QKK/@@download/ENCFF709QKK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF728RVS bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6168711 ENCODE Processing Pipeline 535c735b1671fa12d4df693df1e88cf9 https://www.encodeproject.org/files/ENCFF728RVS/@@download/ENCFF728RVS.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF720ELQ bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF083HMM 7006833 ENCODE Processing Pipeline bf0f7fa24e60327e78c6986fbc3c5c14 https://www.encodeproject.org/files/ENCFF720ELQ/@@download/ENCFF720ELQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF537TPH bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 2 ENCFF447KVS, ENCFF609UIZ, ENCFF823USR 6847572 ENCODE Processing Pipeline 9a412d4706e5a175632b374fe64d70bb https://www.encodeproject.org/files/ENCFF537TPH/@@download/ENCFF537TPH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF359FUJ bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 7006203 ENCODE Processing Pipeline cce3be3f04bf615b9a5f510bee1382df https://www.encodeproject.org/files/ENCFF359FUJ/@@download/ENCFF359FUJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF830THH bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF069VLP 6570586 ENCODE Processing Pipeline 8e908668460f3de17877175ec4ff2aff https://www.encodeproject.org/files/ENCFF830THH/@@download/ENCFF830THH.bed.gz hg19 released file validation error mismatched file status ENCFF778JVV bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF455FCE 4899504 ENCODE Processing Pipeline 8ff62ab3cd20a8f08c8c09deea1f1b79 https://www.encodeproject.org/files/ENCFF778JVV/@@download/ENCFF778JVV.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF667SBT bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 2 ENCFF089EVB, ENCFF548ERH 5596224 ENCODE Processing Pipeline 0590079ae7fb20d34a1ed34117199a3b https://www.encodeproject.org/files/ENCFF667SBT/@@download/ENCFF667SBT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF826WVJ bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF599UMV 6750753 ENCODE Processing Pipeline 9162c45e66377772f08fd31e22498ec8 https://www.encodeproject.org/files/ENCFF826WVJ/@@download/ENCFF826WVJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF097FQT bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF056PRJ 6509830 ENCODE Processing Pipeline 8059b30de21948e537429d01c40672a0 https://www.encodeproject.org/files/ENCFF097FQT/@@download/ENCFF097FQT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF649FUD bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 6769208 ENCODE Processing Pipeline 31feb33dee426db3890aca3cb4be62c0 https://www.encodeproject.org/files/ENCFF649FUD/@@download/ENCFF649FUD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF617GWE bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF882ISN 6828368 ENCODE Processing Pipeline 8abe64ecb226c1787ed5a0fef81f4dc2 https://www.encodeproject.org/files/ENCFF617GWE/@@download/ENCFF617GWE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF314NQZ bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF441IWC, ENCFF641CEP 6331282 ENCODE Processing Pipeline 12d3e1e4d51ac0d211ec5ef5685053da https://www.encodeproject.org/files/ENCFF314NQZ/@@download/ENCFF314NQZ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF640MOW bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF137JPI, ENCFF462LKA 5437056 ENCODE Processing Pipeline 71022d9ddfec1b37ca1f962b1e042cc0 https://www.encodeproject.org/files/ENCFF640MOW/@@download/ENCFF640MOW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF470GVA bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF743WPX 4288879 ENCODE Processing Pipeline c50030cc451b3918150cb26cce04d51b https://www.encodeproject.org/files/ENCFF470GVA/@@download/ENCFF470GVA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF241GHZ bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF265PPN 7075753 ENCODE Processing Pipeline b5f74ce8c1a40cd865b3bf959ac06c1f https://www.encodeproject.org/files/ENCFF241GHZ/@@download/ENCFF241GHZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF255BKX bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF614FKO 6301134 ENCODE Processing Pipeline bcf2d7e1c6c373c9d733cebba44ff756 https://www.encodeproject.org/files/ENCFF255BKX/@@download/ENCFF255BKX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF925BTV bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF303REI 6501874 ENCODE Processing Pipeline cc503f72ec1ef95ae9733ea1bbd71d7b https://www.encodeproject.org/files/ENCFF925BTV/@@download/ENCFF925BTV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF232NKH bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6426584 ENCODE Processing Pipeline 51d71096ec3d9a23f46ef7cdf33298c3 https://www.encodeproject.org/files/ENCFF232NKH/@@download/ENCFF232NKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF666VFP bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6571503 ENCODE Processing Pipeline 6573094f2ef543e6777f4d0454c925b9 https://www.encodeproject.org/files/ENCFF666VFP/@@download/ENCFF666VFP.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF106RGY bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF341UEE 6541828 ENCODE Processing Pipeline e6f5f66dd80e240ea9a45a7df2ae5940 https://www.encodeproject.org/files/ENCFF106RGY/@@download/ENCFF106RGY.bed.gz hg19 released mild to moderate bottlenecking ENCFF147SMY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5085112 ENCODE Processing Pipeline 204e1eba5fef56936b074b620d7544ef https://www.encodeproject.org/files/ENCFF147SMY/@@download/ENCFF147SMY.bed.gz hg19 released low read length ENCFF483GPY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5288651 ENCODE Processing Pipeline 7a518edfff897def63a39821aed21c96 https://www.encodeproject.org/files/ENCFF483GPY/@@download/ENCFF483GPY.bed.gz hg19 archived low read length ENCFF688JRI bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 2 ENCFF834TUP, ENCFF974JDO 6894888 ENCODE Processing Pipeline 793d3c3aaad36a9eb226e1d4420a0d34 https://www.encodeproject.org/files/ENCFF688JRI/@@download/ENCFF688JRI.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF995GUT bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF520SIO 6004443 ENCODE Processing Pipeline 67e2a4a9a62cb8a9694eb955ce810215 https://www.encodeproject.org/files/ENCFF995GUT/@@download/ENCFF995GUT.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF736LBL bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 6013482 ENCODE Processing Pipeline e90c186ea3598929d636d4b1f7b5c3eb https://www.encodeproject.org/files/ENCFF736LBL/@@download/ENCFF736LBL.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF035WWJ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 6996638 ENCODE Processing Pipeline 1e16fc976551c3b160a13c72af02467e https://www.encodeproject.org/files/ENCFF035WWJ/@@download/ENCFF035WWJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF952CNK bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 2 ENCFF005DDP, ENCFF592WAL 7118963 ENCODE Processing Pipeline 694a9800274d934f32a35573bd56f166 https://www.encodeproject.org/files/ENCFF952CNK/@@download/ENCFF952CNK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF258LFF bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL 6554587 ENCODE Processing Pipeline c1dac2f9954ad5604b175a3aa377852c https://www.encodeproject.org/files/ENCFF258LFF/@@download/ENCFF258LFF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF664TWV bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF879SEB 6805466 ENCODE Processing Pipeline 8251efdb56f513c0d4134b6b3ad1c83c https://www.encodeproject.org/files/ENCFF664TWV/@@download/ENCFF664TWV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF307JUJ bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 6500043 ENCODE Processing Pipeline 5c65bc9a01516d7a56cae72f2baf034a https://www.encodeproject.org/files/ENCFF307JUJ/@@download/ENCFF307JUJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF692UVD bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF325CNX, ENCFF889DCH 5715951 ENCODE Processing Pipeline a0705a7ca020cfd57a0ac4792910889f https://www.encodeproject.org/files/ENCFF692UVD/@@download/ENCFF692UVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF193LNB bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF049MPQ, ENCFF934FGG 6498031 ENCODE Processing Pipeline 11d21fe06c3882b875d79e12c9835779 https://www.encodeproject.org/files/ENCFF193LNB/@@download/ENCFF193LNB.bed.gz hg19 released ENCFF960PAB bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6662647 ENCODE Processing Pipeline 0eac0334544d617f38a707c49d66c71f https://www.encodeproject.org/files/ENCFF960PAB/@@download/ENCFF960PAB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF946SUD bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6796580 ENCODE Processing Pipeline 4e5ad619e5c5250523ad54e9782f723d https://www.encodeproject.org/files/ENCFF946SUD/@@download/ENCFF946SUD.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF634YJK bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 6662684 ENCODE Processing Pipeline e54b64c6a6acb14134508fc5c8ce4087 https://www.encodeproject.org/files/ENCFF634YJK/@@download/ENCFF634YJK.bed.gz hg19 released low read depth ENCFF032IBC bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4360735 ENCODE Processing Pipeline 1e89a159174aa11f8b800978c23cddb4 https://www.encodeproject.org/files/ENCFF032IBC/@@download/ENCFF032IBC.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF533MTU bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4533441 ENCODE Processing Pipeline ea922578f229cf2741b1dd492b421187 https://www.encodeproject.org/files/ENCFF533MTU/@@download/ENCFF533MTU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF848NAZ bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH 6290112 ENCODE Processing Pipeline 3b3f4f6bc05b533f8f3bcb305ee2cf47 https://www.encodeproject.org/files/ENCFF848NAZ/@@download/ENCFF848NAZ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF958NNA bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF598OEP, ENCFF980CFV 6899333 ENCODE Processing Pipeline 1bfb25fd393078f3edb6175f8b1b89c0 https://www.encodeproject.org/files/ENCFF958NNA/@@download/ENCFF958NNA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF852HEY bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF969ZBO 6149229 ENCODE Processing Pipeline a4c8f4d0da2876d7510bfc5873fd3e84 https://www.encodeproject.org/files/ENCFF852HEY/@@download/ENCFF852HEY.bed.gz hg19 released ENCFF827JSS bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 2 ENCFF481IFQ, ENCFF592WAL, ENCFF901CND 7108656 ENCODE Processing Pipeline 0b0252f04721227207518ddd1fbdc92a https://www.encodeproject.org/files/ENCFF827JSS/@@download/ENCFF827JSS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF719LYG bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF136YSL, ENCFF654EHF, ENCFF991UTU 6334036 ENCODE Processing Pipeline 5b9211da3befebf088139f31ac6a136a https://www.encodeproject.org/files/ENCFF719LYG/@@download/ENCFF719LYG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF862YTD bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 6509263 ENCODE Processing Pipeline d487a642ab6faabf4426c5f42cb492b3 https://www.encodeproject.org/files/ENCFF862YTD/@@download/ENCFF862YTD.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF905UQM bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF343GJG, ENCFF449NNE, ENCFF999EQI 6940031 ENCODE Processing Pipeline c163f38247f58fd7e4cb93d11e470e77 https://www.encodeproject.org/files/ENCFF905UQM/@@download/ENCFF905UQM.bed.gz hg19 released experiment not submitted to GEO ENCFF799ZCH bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF042EJM, ENCFF043GGB, ENCFF705RUU 4849098 ENCODE Processing Pipeline e8902ac67406ab63ce04552e64737df6 https://www.encodeproject.org/files/ENCFF799ZCH/@@download/ENCFF799ZCH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF227SFY bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF632BDC 6750244 ENCODE Processing Pipeline 304f675884eb1ae88c242b57b95bafc0 https://www.encodeproject.org/files/ENCFF227SFY/@@download/ENCFF227SFY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF851VOU bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF527ONV 6348836 ENCODE Processing Pipeline 7d58317bcc1ae50af900f4ebf701b643 https://www.encodeproject.org/files/ENCFF851VOU/@@download/ENCFF851VOU.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF893XGS bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF965XIE 5899643 ENCODE Processing Pipeline 6228031582af1a85c88261d6557e1cca https://www.encodeproject.org/files/ENCFF893XGS/@@download/ENCFF893XGS.bed.gz hg19 released ENCFF087DBS bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF198LHP, ENCFF321TUP, ENCFF806YIH 6182514 ENCODE Processing Pipeline 62aaafec07ac3455da4816526b90bfdb https://www.encodeproject.org/files/ENCFF087DBS/@@download/ENCFF087DBS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF775DQT bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF987CVS 6439557 ENCODE Processing Pipeline 332de8d7a5d2543cf08b945f2c294da7 https://www.encodeproject.org/files/ENCFF775DQT/@@download/ENCFF775DQT.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF513RYS bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 6709320 ENCODE Processing Pipeline f9c73cee15733bf6764b14d01bb16516 https://www.encodeproject.org/files/ENCFF513RYS/@@download/ENCFF513RYS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF363JWT bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF360QLH 6609966 ENCODE Processing Pipeline 7d936d716a4f7a9c64c59998db5a6280 https://www.encodeproject.org/files/ENCFF363JWT/@@download/ENCFF363JWT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF830CSU bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 7030738 ENCODE Processing Pipeline e5860c326800a5dd895b7b6fcefa0822 https://www.encodeproject.org/files/ENCFF830CSU/@@download/ENCFF830CSU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF299XML bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF416GTI 6981507 ENCODE Processing Pipeline 704d8978ab38cb047bd51c0681113bda https://www.encodeproject.org/files/ENCFF299XML/@@download/ENCFF299XML.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF996FCB bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 6072101 ENCODE Processing Pipeline 6a573d9edf0d948d5d9e9723b9b2c238 https://www.encodeproject.org/files/ENCFF996FCB/@@download/ENCFF996FCB.bed.gz hg19 released mild to moderate bottlenecking ENCFF903NXY bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF288YZC 6491428 ENCODE Processing Pipeline 39529d91dcd5aa5a8305a0601fdfcc31 https://www.encodeproject.org/files/ENCFF903NXY/@@download/ENCFF903NXY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF967NOV bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 5253133 ENCODE Processing Pipeline fce57668b13f325ec0a03199697d80bb https://www.encodeproject.org/files/ENCFF967NOV/@@download/ENCFF967NOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF147KIZ bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF502XEG 6907242 ENCODE Processing Pipeline abec0331a6adcdacce036eb195104bed https://www.encodeproject.org/files/ENCFF147KIZ/@@download/ENCFF147KIZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF077UDW bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF345ODT, ENCFF705NOL 7016741 ENCODE Processing Pipeline b517623b44ab8c822c722316791d4787 https://www.encodeproject.org/files/ENCFF077UDW/@@download/ENCFF077UDW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF543MRW bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF490FAT 6045732 ENCODE Processing Pipeline 460cc347ecf252bfe937e05475974893 https://www.encodeproject.org/files/ENCFF543MRW/@@download/ENCFF543MRW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF151HMH bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF402MTF 6800910 ENCODE Processing Pipeline 9e497ed2939240c7bb854da585a137cc https://www.encodeproject.org/files/ENCFF151HMH/@@download/ENCFF151HMH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF167KNP bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF419WTW 6658551 ENCODE Processing Pipeline 7ff63ae1173185e738d43d442c8f775c https://www.encodeproject.org/files/ENCFF167KNP/@@download/ENCFF167KNP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF308IOS bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF975BWD 6849212 ENCODE Processing Pipeline 9621775a6b34d33a63ee13b17d8f1677 https://www.encodeproject.org/files/ENCFF308IOS/@@download/ENCFF308IOS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF527ONY bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5472017 ENCODE Processing Pipeline 42824a013f1513874aafba1837a83137 https://www.encodeproject.org/files/ENCFF527ONY/@@download/ENCFF527ONY.bed.gz hg19 released mild to moderate bottlenecking ENCFF789FWH bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5671340 ENCODE Processing Pipeline 69423bde704039a08639185373c99a15 https://www.encodeproject.org/files/ENCFF789FWH/@@download/ENCFF789FWH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF083XOF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6014706 ENCODE Processing Pipeline ff0df313b2f61b66df6a8b77f1d620a0 https://www.encodeproject.org/files/ENCFF083XOF/@@download/ENCFF083XOF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF436PYK bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6191704 ENCODE Processing Pipeline dfd4ddecf20c1deb9cf5c955f1208c50 https://www.encodeproject.org/files/ENCFF436PYK/@@download/ENCFF436PYK.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF045IZP bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF765DQW, ENCFF814FCQ 3666746 ENCODE Processing Pipeline a3e4c5b011aa63df33f006abc1ce2653 https://www.encodeproject.org/files/ENCFF045IZP/@@download/ENCFF045IZP.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF489KKG bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4843098 ENCODE Processing Pipeline 80c90deee256f00d680c32793f0ce768 https://www.encodeproject.org/files/ENCFF489KKG/@@download/ENCFF489KKG.bed.gz hg19 archived low read length, low read depth ENCFF401ZKP bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4606728 ENCODE Processing Pipeline 6fe2713e4cc421da4f8e405aa90ad408 https://www.encodeproject.org/files/ENCFF401ZKP/@@download/ENCFF401ZKP.bed.gz hg19 released low read length, low read depth ENCFF566XPO bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF320ABW, ENCFF705NOL 6937675 ENCODE Processing Pipeline 38d46dcfcd1b64bf533d333e3d2ba03d https://www.encodeproject.org/files/ENCFF566XPO/@@download/ENCFF566XPO.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF302BCZ bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 2 ENCFF709WTC, ENCFF801GGG, ENCFF881DVS 6943038 ENCODE Processing Pipeline 9d0c5e0ee1fae4d843aee4b2f5461707 https://www.encodeproject.org/files/ENCFF302BCZ/@@download/ENCFF302BCZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF590SBA bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF332MIA 7009184 ENCODE Processing Pipeline 7a1760ccff39c77212675d1733bd5769 https://www.encodeproject.org/files/ENCFF590SBA/@@download/ENCFF590SBA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF629MDH bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 6426362 ENCODE Processing Pipeline cfa47a78182eda62eb4386595cf76634 https://www.encodeproject.org/files/ENCFF629MDH/@@download/ENCFF629MDH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF897LGZ bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 2 ENCFF965ZXK, ENCFF987QVP 6723087 ENCODE Processing Pipeline 99bbd0406c6f9e96efc38078d2cd7f38 https://www.encodeproject.org/files/ENCFF897LGZ/@@download/ENCFF897LGZ.bed.gz hg19 released missing genetic modification characterization ENCFF420BNC bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF843NNY 6858918 ENCODE Processing Pipeline f8c5c8cf514ab822b44406dd1e94a5da https://www.encodeproject.org/files/ENCFF420BNC/@@download/ENCFF420BNC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF562UJV bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6125895 ENCODE Processing Pipeline 4fe3ea1090463a5a9479a4052efef902 https://www.encodeproject.org/files/ENCFF562UJV/@@download/ENCFF562UJV.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF829KFC bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 6680008 ENCODE Processing Pipeline 9916a25b6b7c1363fbfb629df670f9c3 https://www.encodeproject.org/files/ENCFF829KFC/@@download/ENCFF829KFC.bed.gz hg19 released ENCFF850KMN bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF253RUM, ENCFF708VUG 6177706 ENCODE Processing Pipeline 8e73c1de339a2b522cce5399ebecbfad https://www.encodeproject.org/files/ENCFF850KMN/@@download/ENCFF850KMN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF097DVZ bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF432WTX 4691740 ENCODE Processing Pipeline 1deaf2fdf6bed5fd255130f05489b44f https://www.encodeproject.org/files/ENCFF097DVZ/@@download/ENCFF097DVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF268CZL bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 5807811 ENCODE Processing Pipeline 7c1eed46b0949017e679dddb6d549375 https://www.encodeproject.org/files/ENCFF268CZL/@@download/ENCFF268CZL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF619TUA bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF860FLL 5105454 ENCODE Processing Pipeline ff2f7ce9a1d94163fe261f3fcffe81c4 https://www.encodeproject.org/files/ENCFF619TUA/@@download/ENCFF619TUA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF456MUP bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF741YEW 2659144 ENCODE Processing Pipeline acdf1392520ee91f4bddbce05b2fea39 https://www.encodeproject.org/files/ENCFF456MUP/@@download/ENCFF456MUP.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF797FYJ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 2 ENCFF819KCS, ENCFF834TUP 7147454 ENCODE Processing Pipeline 9b5870a34fff2d07acf06a7e8eb58f90 https://www.encodeproject.org/files/ENCFF797FYJ/@@download/ENCFF797FYJ.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF040CEH bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 2 ENCFF323PVX, ENCFF754ZXY 6561709 ENCODE Processing Pipeline bce420b248bca27e98b833b8038a3721 https://www.encodeproject.org/files/ENCFF040CEH/@@download/ENCFF040CEH.bed.gz hg19 released missing genetic modification characterization ENCFF569NZY bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF803DFL 5184257 ENCODE Processing Pipeline da68896677a75e619ff62fd81a6fafa3 https://www.encodeproject.org/files/ENCFF569NZY/@@download/ENCFF569NZY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF915CHI bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF010ZJB 6400035 ENCODE Processing Pipeline 69934270b96944115e708f4cdaf8789c https://www.encodeproject.org/files/ENCFF915CHI/@@download/ENCFF915CHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF767UEC bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 6084119 ENCODE Processing Pipeline e1de96b8aea19c3c406a8801326c202e https://www.encodeproject.org/files/ENCFF767UEC/@@download/ENCFF767UEC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF078NCC bed narrowPeak peaks ENCSR217QCK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF697-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF289IND 5972092 ENCODE Processing Pipeline c584bf65497f169056ed8557416c4d71 https://www.encodeproject.org/files/ENCFF078NCC/@@download/ENCFF078NCC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF489FNP bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF894UUJ 5962219 ENCODE Processing Pipeline 9a04c9281a0893a0335833d323a82929 https://www.encodeproject.org/files/ENCFF489FNP/@@download/ENCFF489FNP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF225XFM bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF856OQX 6626416 ENCODE Processing Pipeline c669b72e356bca13d4f5c5effb5be7e1 https://www.encodeproject.org/files/ENCFF225XFM/@@download/ENCFF225XFM.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF626FHE bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 2 ENCFF586ITU, ENCFF834TUP 7030359 ENCODE Processing Pipeline 89890d22842a3d686828dd8bf8a1d8b9 https://www.encodeproject.org/files/ENCFF626FHE/@@download/ENCFF626FHE.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF994IZJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 7191587 ENCODE Processing Pipeline 36d1b5a86c8378751f9dce955bef0765 https://www.encodeproject.org/files/ENCFF994IZJ/@@download/ENCFF994IZJ.bed.gz hg19 released ENCFF144BHZ bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4684240 ENCODE Processing Pipeline b039605dd3eb42480c302fbe7f343f62 https://www.encodeproject.org/files/ENCFF144BHZ/@@download/ENCFF144BHZ.bed.gz hg19 released low read length ENCFF555MVU bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4929047 ENCODE Processing Pipeline 7a4179c75cc94bab2656baeaec9484b2 https://www.encodeproject.org/files/ENCFF555MVU/@@download/ENCFF555MVU.bed.gz hg19 archived low read length ENCFF369MAB bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 2 ENCFF124TQP, ENCFF587NFZ 6413409 ENCODE Processing Pipeline 3c8dc9701c59e3459d05d0c85a53f7e7 https://www.encodeproject.org/files/ENCFF369MAB/@@download/ENCFF369MAB.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF297SZY bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 6877847 ENCODE Processing Pipeline c2b81806f84ef03fed647b67d570495d https://www.encodeproject.org/files/ENCFF297SZY/@@download/ENCFF297SZY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF844TSM bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF289XMH, ENCFF817NEK 4355085 ENCODE Processing Pipeline bbecb33e1f7d254df166830e5d22e528 https://www.encodeproject.org/files/ENCFF844TSM/@@download/ENCFF844TSM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF025IJB bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF754GXN 5921658 ENCODE Processing Pipeline 81e38280b5580f7ca0eb259760a03f10 https://www.encodeproject.org/files/ENCFF025IJB/@@download/ENCFF025IJB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF371DJF bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF425JYG, ENCFF938TLX 4494818 ENCODE Processing Pipeline cd3d89c26a1f5e84e8bd37e36a5d534b https://www.encodeproject.org/files/ENCFF371DJF/@@download/ENCFF371DJF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF182GSY bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF967GZZ 7152868 ENCODE Processing Pipeline 97ff1e2287e7f6ef697cf0a1025cd782 https://www.encodeproject.org/files/ENCFF182GSY/@@download/ENCFF182GSY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF720HMJ bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF353HWN 6931121 ENCODE Processing Pipeline e721b375ae7d9ce54e660e5e151484c6 https://www.encodeproject.org/files/ENCFF720HMJ/@@download/ENCFF720HMJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF051GOZ bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 6764931 ENCODE Processing Pipeline 8203e4aaf17fb840fd8bb1e9907c161c https://www.encodeproject.org/files/ENCFF051GOZ/@@download/ENCFF051GOZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF545DEV bed narrowPeak peaks ENCSR513XQX ChIP-seq EFO:0001086 A549 cell line Homo sapiens SIN3A-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF717AOP 6856137 ENCODE Processing Pipeline caf614f078808a4a4423b09e566e6de2 https://www.encodeproject.org/files/ENCFF545DEV/@@download/ENCFF545DEV.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption ENCFF699WES bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6803821 ENCODE Processing Pipeline 30f8a9e2d5f84d79f7c8112a89120a22 https://www.encodeproject.org/files/ENCFF699WES/@@download/ENCFF699WES.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF778OYJ bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6686411 ENCODE Processing Pipeline 1cf0b24d5c55b03395a83d20ba7bab99 https://www.encodeproject.org/files/ENCFF778OYJ/@@download/ENCFF778OYJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF800JIO bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF099KPK, ENCFF182WHU 7109477 ENCODE Processing Pipeline 680e3d3e1d9c0670ab04c7dcd62bd88f https://www.encodeproject.org/files/ENCFF800JIO/@@download/ENCFF800JIO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF010VLV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF366IHT 6282170 ENCODE Processing Pipeline eafd607c9835055ae6d129e2c51038f4 https://www.encodeproject.org/files/ENCFF010VLV/@@download/ENCFF010VLV.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF846FXF bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287WTN, ENCFF293UAO 4677267 ENCODE Processing Pipeline 5d04eabf7d801827ba9dd428b67b3a2a https://www.encodeproject.org/files/ENCFF846FXF/@@download/ENCFF846FXF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF508BAI bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF216GDM 6401918 ENCODE Processing Pipeline e857a61d9d61776699bf2b20d368911d https://www.encodeproject.org/files/ENCFF508BAI/@@download/ENCFF508BAI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF422YAW bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF076LCN 6105914 ENCODE Processing Pipeline c3618d87840ada5f29980f9e9f2a59f6 https://www.encodeproject.org/files/ENCFF422YAW/@@download/ENCFF422YAW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF218HTW bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF460MGY 6112214 ENCODE Processing Pipeline 4a9a23aade8c144bdb62fb8f80f577b3 https://www.encodeproject.org/files/ENCFF218HTW/@@download/ENCFF218HTW.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF447PFL bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF654YPD 6542671 ENCODE Processing Pipeline b9d1e0192160dc522e26b5208e8519fa https://www.encodeproject.org/files/ENCFF447PFL/@@download/ENCFF447PFL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF230HEO bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379RWQ, ENCFF387KXA, ENCFF762JSN 6283060 ENCODE Processing Pipeline 6bd035ce5f6076037cebcab24c8b18c8 https://www.encodeproject.org/files/ENCFF230HEO/@@download/ENCFF230HEO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF725JDK bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF011BPU, ENCFF536GEN, ENCFF824DBS 2546615 ENCODE Processing Pipeline 73659440cf11ea61b2843f4494dcf902 https://www.encodeproject.org/files/ENCFF725JDK/@@download/ENCFF725JDK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF397APL bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF229UUP, ENCFF760DHW 6091011 ENCODE Processing Pipeline e7eeb8d15378936a2d66d41bc3c8b987 https://www.encodeproject.org/files/ENCFF397APL/@@download/ENCFF397APL.bed.gz hg19 released ENCFF534OBN bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF185JZF, ENCFF725UGE 4994583 ENCODE Processing Pipeline e342cea49f835f1c6541f8e569416001 https://www.encodeproject.org/files/ENCFF534OBN/@@download/ENCFF534OBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF802QKE bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 2 ENCFF006RYF, ENCFF160VXC, ENCFF834TUP 7232749 ENCODE Processing Pipeline c28c2556c0125c990ca144d7b2d07d0e https://www.encodeproject.org/files/ENCFF802QKE/@@download/ENCFF802QKE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF975MKK bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF927NKH, ENCFF980CFV 6911124 ENCODE Processing Pipeline 3891d0f8ae8e4448f82ee4aaa08694b8 https://www.encodeproject.org/files/ENCFF975MKK/@@download/ENCFF975MKK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF383XWW bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF622MSR, ENCFF904LDR 5301624 ENCODE Processing Pipeline f78001de2701c3d1ead6e1dfb6d25875 https://www.encodeproject.org/files/ENCFF383XWW/@@download/ENCFF383XWW.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF915TWO bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 6245568 ENCODE Processing Pipeline be53c15e63e17b68db330f759e7bf3e4 https://www.encodeproject.org/files/ENCFF915TWO/@@download/ENCFF915TWO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF315GZR bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 4255538 ENCODE Processing Pipeline 4f8d22993149919034182d1036579416 https://www.encodeproject.org/files/ENCFF315GZR/@@download/ENCFF315GZR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF400BJI bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF290PNU, ENCFF999EQI 6023081 ENCODE Processing Pipeline 754ac46ee432a8221951361cc4382282 https://www.encodeproject.org/files/ENCFF400BJI/@@download/ENCFF400BJI.bed.gz hg19 released ENCFF824KUU bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 2 ENCFF447KVS, ENCFF716EKQ, ENCFF823USR 6934811 ENCODE Processing Pipeline 764ae30459dbbba0d0cb27fefa7a860f https://www.encodeproject.org/files/ENCFF824KUU/@@download/ENCFF824KUU.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF262SHR bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF552AOU, ENCFF755SZH, ENCFF938OPX 5263028 ENCODE Processing Pipeline dd401ee2de7039f1bc6261885f376413 https://www.encodeproject.org/files/ENCFF262SHR/@@download/ENCFF262SHR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF912QBK bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 2 ENCFF449ZQF, ENCFF541WBX 6980795 ENCODE Processing Pipeline ec15f630d11debe6ea971d6126e6d6a1 https://www.encodeproject.org/files/ENCFF912QBK/@@download/ENCFF912QBK.bed.gz hg19 released missing genetic modification characterization ENCFF374WLL bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 2 ENCFF129ZZR, ENCFF961GDC 7054215 ENCODE Processing Pipeline 967f0bbb6d85e93bba5900e6ed6d2cf1 https://www.encodeproject.org/files/ENCFF374WLL/@@download/ENCFF374WLL.bed.gz hg19 released missing genetic modification characterization ENCFF154EAD bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF130JET, ENCFF540RWT 5164288 ENCODE Processing Pipeline 3ece3de3b2b08e7958c8b5e6a373202f https://www.encodeproject.org/files/ENCFF154EAD/@@download/ENCFF154EAD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF265NZD bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7207096 ENCODE Processing Pipeline b6d0dca4b146c770fc2c5697cd8aa194 https://www.encodeproject.org/files/ENCFF265NZD/@@download/ENCFF265NZD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF783GCE bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 2 ENCFF500XCK, ENCFF743HYF 6447846 ENCODE Processing Pipeline 7cb8cf2a71265a1596660d48d5838dec https://www.encodeproject.org/files/ENCFF783GCE/@@download/ENCFF783GCE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF113PGY bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF336DPP, ENCFF837IOW 4772938 ENCODE Processing Pipeline 23ac45a229bdbfcc354141bafd672330 https://www.encodeproject.org/files/ENCFF113PGY/@@download/ENCFF113PGY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF334IIE bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 4718507 ENCODE Processing Pipeline 15b4c3e9c786715520f4db3583147756 https://www.encodeproject.org/files/ENCFF334IIE/@@download/ENCFF334IIE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF978OGV bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO 6664109 ENCODE Processing Pipeline 08fc006cd3816c33384447ecec84d699 https://www.encodeproject.org/files/ENCFF978OGV/@@download/ENCFF978OGV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF055PQZ bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 2 ENCFF360HZC, ENCFF853BBD 5883152 ENCODE Processing Pipeline f8d5515a78518aeadbe36d0619397008 https://www.encodeproject.org/files/ENCFF055PQZ/@@download/ENCFF055PQZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF048WFQ bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6716942 ENCODE Processing Pipeline 3c3d50faed06c38edbebf2f7fa4630f3 https://www.encodeproject.org/files/ENCFF048WFQ/@@download/ENCFF048WFQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF776OJT bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF457KTM 6814256 ENCODE Processing Pipeline cf846e6c8a2c833b88c07cc3c1965f38 https://www.encodeproject.org/files/ENCFF776OJT/@@download/ENCFF776OJT.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF283QCO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 5944397 ENCODE Processing Pipeline c5a1ccee1fd2fe27f7c40c0aa1289bb9 https://www.encodeproject.org/files/ENCFF283QCO/@@download/ENCFF283QCO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF777XYO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 6114774 ENCODE Processing Pipeline 591a63e89b91ba7784a1f2dd8d5bdeca https://www.encodeproject.org/files/ENCFF777XYO/@@download/ENCFF777XYO.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF269CZZ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 6536831 ENCODE Processing Pipeline eb59420ac468be2b23c240c9cce56837 https://www.encodeproject.org/files/ENCFF269CZZ/@@download/ENCFF269CZZ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF804FYW bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF145BKE, ENCFF864ASU 4862264 ENCODE Processing Pipeline 81c210f2e434273d63d76c77e2c57019 https://www.encodeproject.org/files/ENCFF804FYW/@@download/ENCFF804FYW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF195CRO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 3290869 ENCODE Processing Pipeline bc79aa627629fe2c0e0dba7cc8faa03f https://www.encodeproject.org/files/ENCFF195CRO/@@download/ENCFF195CRO.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF412SBF bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF632RLI, ENCFF901MQU 5160755 ENCODE Processing Pipeline f6d3c63dcd53e3fa5b2668f469cd49f1 https://www.encodeproject.org/files/ENCFF412SBF/@@download/ENCFF412SBF.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF137OKC bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF419TYN, ENCFF901MQU 5351871 ENCODE Processing Pipeline d1abd021e471634b526d8eec0cf160df https://www.encodeproject.org/files/ENCFF137OKC/@@download/ENCFF137OKC.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF734DHL bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF692IRB 3655091 ENCODE Processing Pipeline 7cb48ecf5f77bc949c309982601750e9 https://www.encodeproject.org/files/ENCFF734DHL/@@download/ENCFF734DHL.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF970QSE bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF492UHU 6315831 ENCODE Processing Pipeline 452e82234e245d6bffd74b9e4d727469 https://www.encodeproject.org/files/ENCFF970QSE/@@download/ENCFF970QSE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF078LXS bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human DNA False 2018-01-26 ENCODE 2 ENCFF021QKM, ENCFF051LWI 6475842 ENCODE Processing Pipeline 99400599479cd250e63e2448cfb3e94f https://www.encodeproject.org/files/ENCFF078LXS/@@download/ENCFF078LXS.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF782MKD bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 2 ENCFF002JGD, ENCFF287SKW 6058390 ENCODE Processing Pipeline ae453d52e1d9748a41d0e88ba30dd4fe https://www.encodeproject.org/files/ENCFF782MKD/@@download/ENCFF782MKD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF185LGF bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF123UZJ 5913094 ENCODE Processing Pipeline 47df0023443cb72997dac6aa2d0ad90f https://www.encodeproject.org/files/ENCFF185LGF/@@download/ENCFF185LGF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF883CRS bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184JSZ, ENCFF356DXM 3590795 ENCODE Processing Pipeline a541d39a03f17cf870926ee14e6558be https://www.encodeproject.org/files/ENCFF883CRS/@@download/ENCFF883CRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF328DUA bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 5231189 ENCODE Processing Pipeline 85f53ffb30f6faf16fe0caa5e9b060c9 https://www.encodeproject.org/files/ENCFF328DUA/@@download/ENCFF328DUA.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF883DUG bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 3918845 ENCODE Processing Pipeline 1c823522588c52a4e26b23b040b53980 https://www.encodeproject.org/files/ENCFF883DUG/@@download/ENCFF883DUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF556WPW bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF630WRV, ENCFF671VNQ 4086760 ENCODE Processing Pipeline 38325030d7c783e7c3e119b604237087 https://www.encodeproject.org/files/ENCFF556WPW/@@download/ENCFF556WPW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF493ZGH bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 6278467 ENCODE Processing Pipeline c3e6b8a485e8bd298fa9c2ae32c9ffe3 https://www.encodeproject.org/files/ENCFF493ZGH/@@download/ENCFF493ZGH.bed.gz hg19 released borderline replicate concordance ENCFF451PTD bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV 3950534 ENCODE Processing Pipeline a1b98e61822ac785726b5b9bffafc2a8 https://www.encodeproject.org/files/ENCFF451PTD/@@download/ENCFF451PTD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF884XPS bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF668MHY 4699127 ENCODE Processing Pipeline 6f90fde65bb7f6500c06791315ab13ba https://www.encodeproject.org/files/ENCFF884XPS/@@download/ENCFF884XPS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF580JQM bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF280GWX, ENCFF752STA 6363255 ENCODE Processing Pipeline 172a6fe8a42f6c0180258fcc629881ae https://www.encodeproject.org/files/ENCFF580JQM/@@download/ENCFF580JQM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF924QYS bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI 6954946 ENCODE Processing Pipeline 347204c58c34a7293b03f05d4a00694b https://www.encodeproject.org/files/ENCFF924QYS/@@download/ENCFF924QYS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF447AAX bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF185VLH 4611839 ENCODE Processing Pipeline 669c475ec01d0c94b9df6df24ffcd46b https://www.encodeproject.org/files/ENCFF447AAX/@@download/ENCFF447AAX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF449NJO bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 4667131 ENCODE Processing Pipeline 0797f59575ef5312ca61fdee9a90c048 https://www.encodeproject.org/files/ENCFF449NJO/@@download/ENCFF449NJO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF723YNA bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 6358841 ENCODE Processing Pipeline 71f148421e311b84398fd8449b30f078 https://www.encodeproject.org/files/ENCFF723YNA/@@download/ENCFF723YNA.bed.gz hg19 released mild to moderate bottlenecking ENCFF540KAO bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF564RWN 5952451 ENCODE Processing Pipeline d193db236e8f3bcdddf2ce2d30878ed8 https://www.encodeproject.org/files/ENCFF540KAO/@@download/ENCFF540KAO.bed.gz hg19 released borderline replicate concordance ENCFF375HRI bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF343GPD, ENCFF545DZO 3843215 ENCODE Processing Pipeline c1ef6a2d148a9990c6f6a40e70d97e22 https://www.encodeproject.org/files/ENCFF375HRI/@@download/ENCFF375HRI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595JYV bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 3409558 ENCODE Processing Pipeline da26d58730ca7b31c63da318e70aa432 https://www.encodeproject.org/files/ENCFF595JYV/@@download/ENCFF595JYV.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF697EFZ bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF028JOY, ENCFF864UEQ 5816738 ENCODE Processing Pipeline 01ffbdbf4f6cbb48395de1272c617067 https://www.encodeproject.org/files/ENCFF697EFZ/@@download/ENCFF697EFZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF715NVD bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051QXN, ENCFF205KMO 6402540 ENCODE Processing Pipeline 83c5f44ea3a46ca43b1c3c591f644c11 https://www.encodeproject.org/files/ENCFF715NVD/@@download/ENCFF715NVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF400PPT bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF351PFE 6548867 ENCODE Processing Pipeline 08eee7dad4a4a2a834acb8ba3e3eade0 https://www.encodeproject.org/files/ENCFF400PPT/@@download/ENCFF400PPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF878NMO bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI 5311047 ENCODE Processing Pipeline 1abc77b75264c1b2a827ca80269dbc63 https://www.encodeproject.org/files/ENCFF878NMO/@@download/ENCFF878NMO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF218LZW bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF497SFX, ENCFF949HSN 4408545 ENCODE Processing Pipeline 6011fd5b4090fe3b50fa63bcff9b68ec https://www.encodeproject.org/files/ENCFF218LZW/@@download/ENCFF218LZW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001XQI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 930265 John Stamatoyannopoulos, UW 8cb17cf60a3910f60e2d3659114a6ce5 https://www.encodeproject.org/files/ENCFF001XQI/@@download/ENCFF001XQI.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF680YPK bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 4426464 ENCODE Processing Pipeline 7d41c9c627502dd068266c2530142b6d https://www.encodeproject.org/files/ENCFF680YPK/@@download/ENCFF680YPK.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF518HWU bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF518UZH 6542649 ENCODE Processing Pipeline 0fa0ac3935147e6b1fa544a07a6ed22e https://www.encodeproject.org/files/ENCFF518HWU/@@download/ENCFF518HWU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF300BYZ bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5441262 ENCODE Processing Pipeline 5b3cb310ec86c123168a2c4e64ccff0a https://www.encodeproject.org/files/ENCFF300BYZ/@@download/ENCFF300BYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF467DQG bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5208926 ENCODE Processing Pipeline a2ea47320f68ff5aa0b871eaef64968c https://www.encodeproject.org/files/ENCFF467DQG/@@download/ENCFF467DQG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF839PVK bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF382BNF, ENCFF616LIW 4042486 ENCODE Processing Pipeline 8e92fc8e45b1744b7cdcf659febcb13c https://www.encodeproject.org/files/ENCFF839PVK/@@download/ENCFF839PVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF846AFR bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF575KJF 6620782 ENCODE Processing Pipeline 822e5a55f7455ea033fbd10bee949f78 https://www.encodeproject.org/files/ENCFF846AFR/@@download/ENCFF846AFR.bed.gz hg19 released borderline replicate concordance ENCFF927MZZ bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF611YAM, ENCFF725UGE 6693836 ENCODE Processing Pipeline bec9011d554003cd3d853fa696ac5c5c https://www.encodeproject.org/files/ENCFF927MZZ/@@download/ENCFF927MZZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF517JSD bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF102PTL 7031478 ENCODE Processing Pipeline 4c5fe2fff4d7a4ee261952183f74b012 https://www.encodeproject.org/files/ENCFF517JSD/@@download/ENCFF517JSD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF233WRK bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF766FGH, ENCFF999EQI 6273667 ENCODE Processing Pipeline bf9c6ff41f824cfacebeaaf81e8d3024 https://www.encodeproject.org/files/ENCFF233WRK/@@download/ENCFF233WRK.bed.gz hg19 released ENCFF940FLJ bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF021UBI, ENCFF362LCQ, ENCFF363VZX 5027787 ENCODE Processing Pipeline 5057416e8c59b4279a3347419a9b74e7 https://www.encodeproject.org/files/ENCFF940FLJ/@@download/ENCFF940FLJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF501TBE bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6383565 ENCODE Processing Pipeline aad3a9b2193706c9236a2257ad2da9d9 https://www.encodeproject.org/files/ENCFF501TBE/@@download/ENCFF501TBE.bed.gz hg19 released ENCFF956IIT bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 2 ENCFF217UCE, ENCFF456RAQ, ENCFF825CNQ 6753850 ENCODE Processing Pipeline 99af981c76f042dc43d86c98910ff6ea https://www.encodeproject.org/files/ENCFF956IIT/@@download/ENCFF956IIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF676HRI bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 5153956 ENCODE Processing Pipeline 8d4df699854aa4528b138d46b01e6f27 https://www.encodeproject.org/files/ENCFF676HRI/@@download/ENCFF676HRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF384GPX bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF668ZBZ 4583842 ENCODE Processing Pipeline 66240a4022f81c750f771982b351a2a8 https://www.encodeproject.org/files/ENCFF384GPX/@@download/ENCFF384GPX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF622WDZ bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF473GDU 7079040 ENCODE Processing Pipeline 817b2387e09c000d8bee229f9933df2a https://www.encodeproject.org/files/ENCFF622WDZ/@@download/ENCFF622WDZ.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF543EHV bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 4568839 ENCODE Processing Pipeline 4b258c14634d117050aaa5b3612442c2 https://www.encodeproject.org/files/ENCFF543EHV/@@download/ENCFF543EHV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF001XQQ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 595419 John Stamatoyannopoulos, UW 917b66a2b31af8ad0d2b6b3069a93290 https://www.encodeproject.org/files/ENCFF001XQQ/@@download/ENCFF001XQQ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF114UPJ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 3429862 ENCODE Processing Pipeline bc7fbcace730b80b2ed24ecc3ecc69f7 https://www.encodeproject.org/files/ENCFF114UPJ/@@download/ENCFF114UPJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF322LBK bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF955GGR 6923658 ENCODE Processing Pipeline d280dada6a0e9a4e4f32effaed2231ff https://www.encodeproject.org/files/ENCFF322LBK/@@download/ENCFF322LBK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF397JDZ bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4084696 ENCODE Processing Pipeline 7bc6cca12ce76a4feb5c4840ecc95620 https://www.encodeproject.org/files/ENCFF397JDZ/@@download/ENCFF397JDZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF292NAI bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4277069 ENCODE Processing Pipeline 3e2b5051cc3a350a4bd7cd2457d15ab5 https://www.encodeproject.org/files/ENCFF292NAI/@@download/ENCFF292NAI.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF239TWK bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF049MPQ, ENCFF634EGZ 6593002 ENCODE Processing Pipeline c8ea271d002a5216af0f7d2365a60489 https://www.encodeproject.org/files/ENCFF239TWK/@@download/ENCFF239TWK.bed.gz hg19 released ENCFF604LSK bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF952RZS 5248301 ENCODE Processing Pipeline 13dd57e52c44a2ce112772c990f99a64 https://www.encodeproject.org/files/ENCFF604LSK/@@download/ENCFF604LSK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF886CWH bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF180XGD 7130937 ENCODE Processing Pipeline 1371b95a305cfd36e9fdafedd5e16855 https://www.encodeproject.org/files/ENCFF886CWH/@@download/ENCFF886CWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF420MBN bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 7005846 ENCODE Processing Pipeline 9105af60d97e15745da580d902c1dbe1 https://www.encodeproject.org/files/ENCFF420MBN/@@download/ENCFF420MBN.bed.gz hg19 released ENCFF620JKI bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 5345789 ENCODE Processing Pipeline cc2c46c0e7f74d7af9a17d5c30f9b684 https://www.encodeproject.org/files/ENCFF620JKI/@@download/ENCFF620JKI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF107RYF bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF414KEO, ENCFF599MVB 5226684 ENCODE Processing Pipeline 41ab63e5237d1da80bdb841fe9702e85 https://www.encodeproject.org/files/ENCFF107RYF/@@download/ENCFF107RYF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF648JAT bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF465ENL 6825636 ENCODE Processing Pipeline 573107bfc0e8e29ef5b25a41ef1594c0 https://www.encodeproject.org/files/ENCFF648JAT/@@download/ENCFF648JAT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF362TZV bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF485QJI, ENCFF745VHU 4711542 ENCODE Processing Pipeline f15dc4f03a6e6eeea01387cebb43de21 https://www.encodeproject.org/files/ENCFF362TZV/@@download/ENCFF362TZV.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF669JCO bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF092BEM 5957933 ENCODE Processing Pipeline 6979f0fe47f8c659a777cb9e8707345e https://www.encodeproject.org/files/ENCFF669JCO/@@download/ENCFF669JCO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF143UBP bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 2 ENCFF029WHD, ENCFF165PBN, ENCFF705NOL 6711942 ENCODE Processing Pipeline 58b8e00b67c0f78cfabe5ece85c81983 https://www.encodeproject.org/files/ENCFF143UBP/@@download/ENCFF143UBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF911SLA bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 1155711 ENCODE Processing Pipeline 3ac3a421702105d770b9d7d562d971ee https://www.encodeproject.org/files/ENCFF911SLA/@@download/ENCFF911SLA.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF784YSB bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF033CIS, ENCFF174UCM 3792766 ENCODE Processing Pipeline 8f111d3686ef366f4aa8d1681490076c https://www.encodeproject.org/files/ENCFF784YSB/@@download/ENCFF784YSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF934NER bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 2 ENCFF422QKP 6517994 ENCODE Processing Pipeline 33cbc571cceff3b9bcc55432729dadc3 https://www.encodeproject.org/files/ENCFF934NER/@@download/ENCFF934NER.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF984YVX bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF293YXI 6693325 ENCODE Processing Pipeline 25a5cb7b5f66cee0938f2970487e99df https://www.encodeproject.org/files/ENCFF984YVX/@@download/ENCFF984YVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF138COW bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF413SDX 6773581 ENCODE Processing Pipeline 192664da8a289eb8bc18dbc65f955433 https://www.encodeproject.org/files/ENCFF138COW/@@download/ENCFF138COW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF285HJS bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF456GXY 6744723 ENCODE Processing Pipeline 3a80f5f382a1219ea5c1adb3e70667f4 https://www.encodeproject.org/files/ENCFF285HJS/@@download/ENCFF285HJS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF268AOU bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF182WHU, ENCFF717UGN 7087872 ENCODE Processing Pipeline 85b05f20715e6a1f8e40e3cded3b2154 https://www.encodeproject.org/files/ENCFF268AOU/@@download/ENCFF268AOU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF593OVL bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF720WGU 6716953 ENCODE Processing Pipeline 2c89372816966903c15aee2761bd6ebc https://www.encodeproject.org/files/ENCFF593OVL/@@download/ENCFF593OVL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF884SBE bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV 3331670 ENCODE Processing Pipeline 5397da8ebe0a581e7021de33216a3a87 https://www.encodeproject.org/files/ENCFF884SBE/@@download/ENCFF884SBE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF586OYO bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6659170 ENCODE Processing Pipeline c52b140dffc33236cb7f4de8c8ede3f6 https://www.encodeproject.org/files/ENCFF586OYO/@@download/ENCFF586OYO.bed.gz hg19 released mild to moderate bottlenecking ENCFF531WHZ bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6763828 ENCODE Processing Pipeline e2fd6e82431d48910046afc9e6e2840a https://www.encodeproject.org/files/ENCFF531WHZ/@@download/ENCFF531WHZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF497RBU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 7172441 ENCODE Processing Pipeline 85544aad8c0d6fb0f2a0e380f554bd76 https://www.encodeproject.org/files/ENCFF497RBU/@@download/ENCFF497RBU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF986YIT bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF260DQF, ENCFF277EKP, ENCFF902HRT 4288075 ENCODE Processing Pipeline 65a516199b0ca25e083c873d4791d008 https://www.encodeproject.org/files/ENCFF986YIT/@@download/ENCFF986YIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF590PHP bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF753PKK 7021580 ENCODE Processing Pipeline 5e24b0c32c535f79f9eaaa296ed104fb https://www.encodeproject.org/files/ENCFF590PHP/@@download/ENCFF590PHP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF454YEP bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF048LDJ 6575497 ENCODE Processing Pipeline 5a3e5465632961d6c957d0cfd30b3c73 https://www.encodeproject.org/files/ENCFF454YEP/@@download/ENCFF454YEP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF092PBW bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF399JID 6988574 ENCODE Processing Pipeline 597c0fa15c0984c5dfd3ffd2c291a403 https://www.encodeproject.org/files/ENCFF092PBW/@@download/ENCFF092PBW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF265EFR bed narrowPeak peaks ENCSR351NON ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF629-human DNA formaldehyde False 2017-04-14 ENCODE 2 ENCFF809NQI 7120663 ENCODE Processing Pipeline ac24d7c0cccf249717b03a66acdf32b9 https://www.encodeproject.org/files/ENCFF265EFR/@@download/ENCFF265EFR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF106XCP bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF806VEG, ENCFF843IXX 7359580 ENCODE Processing Pipeline 03abac627f5d7e3670e673c5de04311d https://www.encodeproject.org/files/ENCFF106XCP/@@download/ENCFF106XCP.bed.gz hg19 released experiment not submitted to GEO ENCFF241KMD bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 6464014 ENCODE Processing Pipeline 2faeb82f0ea30ae9a270f9d2fa11cfb2 https://www.encodeproject.org/files/ENCFF241KMD/@@download/ENCFF241KMD.bed.gz hg19 released mild to moderate bottlenecking ENCFF915EDD bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF604EUT 7066448 ENCODE Processing Pipeline 0d3dc14b2c4d9f7d1d6e8d6be2ad8730 https://www.encodeproject.org/files/ENCFF915EDD/@@download/ENCFF915EDD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF097BFF bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 2 ENCFF173XUI 7162408 ENCODE Processing Pipeline f044eeb8cb58e58f96a45cd37a2df892 https://www.encodeproject.org/files/ENCFF097BFF/@@download/ENCFF097BFF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF501UFT bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF143SQI 6455826 ENCODE Processing Pipeline d6763d1e4a78bf1969c31b1408a24757 https://www.encodeproject.org/files/ENCFF501UFT/@@download/ENCFF501UFT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF078MLZ bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 6634715 ENCODE Processing Pipeline 951a881a87ac93ec1bf525e4001051bd https://www.encodeproject.org/files/ENCFF078MLZ/@@download/ENCFF078MLZ.bed.gz hg19 released borderline replicate concordance ENCFF696TNJ bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF322EJB 6471149 ENCODE Processing Pipeline 308113e210b31b6a4068934e5fa36619 https://www.encodeproject.org/files/ENCFF696TNJ/@@download/ENCFF696TNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF531FFM bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF751LSF 5126375 ENCODE Processing Pipeline 342037da70c0419ae21d4af373a10d40 https://www.encodeproject.org/files/ENCFF531FFM/@@download/ENCFF531FFM.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF297NXF bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF937ONB, ENCFF993VCM 5119955 ENCODE Processing Pipeline 44598347b1ae405daae52bef3344bd9b https://www.encodeproject.org/files/ENCFF297NXF/@@download/ENCFF297NXF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF222GJV bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 5988641 ENCODE Processing Pipeline ef43bf68252988f3222d451c9f68c7a5 https://www.encodeproject.org/files/ENCFF222GJV/@@download/ENCFF222GJV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF537WLH bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 7140162 ENCODE Processing Pipeline 7beca13c72ab6a9518c4c80fa839c534 https://www.encodeproject.org/files/ENCFF537WLH/@@download/ENCFF537WLH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF752ZNY bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW 6971417 ENCODE Processing Pipeline fbb61f292703876126770e0316bb2fb4 https://www.encodeproject.org/files/ENCFF752ZNY/@@download/ENCFF752ZNY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF007QMQ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 6900980 ENCODE Processing Pipeline d8e1cf8388b04170b3f1a6067d13be0c https://www.encodeproject.org/files/ENCFF007QMQ/@@download/ENCFF007QMQ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF713XLB bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF320TZV, ENCFF760DHW 6268005 ENCODE Processing Pipeline 581a0088f862964302b319aef8683c80 https://www.encodeproject.org/files/ENCFF713XLB/@@download/ENCFF713XLB.bed.gz hg19 released ENCFF763SUY bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY 5632476 ENCODE Processing Pipeline 2db2fbf17e79b23bab75975472a7cbe7 https://www.encodeproject.org/files/ENCFF763SUY/@@download/ENCFF763SUY.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF676OHT bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 2 ENCFF314DOH, ENCFF834TUP 6953879 ENCODE Processing Pipeline 87d3691a0c6d969aeb56a7364ef2b65b https://www.encodeproject.org/files/ENCFF676OHT/@@download/ENCFF676OHT.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF905USH bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF766AOQ 6730166 ENCODE Processing Pipeline 03fb4667c800aa7b1ecdb0abb28024de https://www.encodeproject.org/files/ENCFF905USH/@@download/ENCFF905USH.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF023RDZ bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 3606433 ENCODE Processing Pipeline d4414b68ef54e6ffdfa4e70ddf3c888f https://www.encodeproject.org/files/ENCFF023RDZ/@@download/ENCFF023RDZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147CFU bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 6073498 ENCODE Processing Pipeline f119ed6bcc4288b8a62e142d50dcf2cc https://www.encodeproject.org/files/ENCFF147CFU/@@download/ENCFF147CFU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF732KKY bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 6959076 ENCODE Processing Pipeline 33b9d759adc2fda406dd8706c23499f5 https://www.encodeproject.org/files/ENCFF732KKY/@@download/ENCFF732KKY.bed.gz hg19 released experiment not submitted to GEO ENCFF442GEH bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF347OMX 7055799 ENCODE Processing Pipeline bcaa103aed7faf7c250583b7d71a0bb7 https://www.encodeproject.org/files/ENCFF442GEH/@@download/ENCFF442GEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF808TMF bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 2 ENCFF046GTS, ENCFF999EQI 5874289 ENCODE Processing Pipeline b324babc25480e5a57db4d1fda62fa7c https://www.encodeproject.org/files/ENCFF808TMF/@@download/ENCFF808TMF.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF669ACI bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 7096163 ENCODE Processing Pipeline b03385abd664a172cb86eefdadf9db0a https://www.encodeproject.org/files/ENCFF669ACI/@@download/ENCFF669ACI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF708LWT bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4652004 ENCODE Processing Pipeline ddcef531b8008fc4729329332ca383ef https://www.encodeproject.org/files/ENCFF708LWT/@@download/ENCFF708LWT.bed.gz hg19 released low read length, low read depth ENCFF676HIP bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4862542 ENCODE Processing Pipeline 50eaf73fab5cf429f4c0f9625aef3717 https://www.encodeproject.org/files/ENCFF676HIP/@@download/ENCFF676HIP.bed.gz hg19 archived low read length, low read depth ENCFF326NFT bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 2 ENCFF165PBN, ENCFF205MUK, ENCFF705NOL 6720130 ENCODE Processing Pipeline 9330a4a4a265ce2287ca3693e267f4f7 https://www.encodeproject.org/files/ENCFF326NFT/@@download/ENCFF326NFT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF494HZF bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF602BPO 5915098 ENCODE Processing Pipeline edd81504aab871fbb08fc8cbb1f34da2 https://www.encodeproject.org/files/ENCFF494HZF/@@download/ENCFF494HZF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF485TME bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF026ARN 6380069 ENCODE Processing Pipeline 1a14427b9930fb093cb318e6025aee39 https://www.encodeproject.org/files/ENCFF485TME/@@download/ENCFF485TME.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF411PFB bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF049MPQ, ENCFF503QER 6218142 ENCODE Processing Pipeline b56920f4e3ee139efec51cb15646b66e https://www.encodeproject.org/files/ENCFF411PFB/@@download/ENCFF411PFB.bed.gz hg19 released ENCFF392FYA bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF049HWT, ENCFF373SVA, ENCFF632RLI 5815654 ENCODE Processing Pipeline 789ea54b22d634605073450e80cc16cd https://www.encodeproject.org/files/ENCFF392FYA/@@download/ENCFF392FYA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF354CAT bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 6812560 ENCODE Processing Pipeline 8cd8dfcc8fd28ef2364d87ca60b3c47f https://www.encodeproject.org/files/ENCFF354CAT/@@download/ENCFF354CAT.bed.gz hg19 released ENCFF001XMQ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 764324 John Stamatoyannopoulos, UW 9cd9622b1e96e405420eac8b55cb3556 https://www.encodeproject.org/files/ENCFF001XMQ/@@download/ENCFF001XMQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF535IOO bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 4745354 ENCODE Processing Pipeline fc5ee30bf6e6b762349c3f3a9fca85d5 https://www.encodeproject.org/files/ENCFF535IOO/@@download/ENCFF535IOO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF861IZT bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 2 ENCFF172XZA, ENCFF251ZWC, ENCFF843IXX 6630451 ENCODE Processing Pipeline 8167ff6ff1a4d115b660c0118b71ad3e https://www.encodeproject.org/files/ENCFF861IZT/@@download/ENCFF861IZT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF007EZA bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 5283201 ENCODE Processing Pipeline 8e8f50efe22e1fc2fd9ff11a5fd84fa4 https://www.encodeproject.org/files/ENCFF007EZA/@@download/ENCFF007EZA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF695MQI bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 2 ENCFF312DGQ, ENCFF939XHK 5840456 ENCODE Processing Pipeline de7e9a7c6a190f044cb2c29fa47d7dc4 https://www.encodeproject.org/files/ENCFF695MQI/@@download/ENCFF695MQI.bed.gz hg19 released low read length, low read depth ENCFF533FEP bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF523IZS 6292098 ENCODE Processing Pipeline c467f05654832d5c882f7a3f4c9d21ec https://www.encodeproject.org/files/ENCFF533FEP/@@download/ENCFF533FEP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF186ZMA bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF255GSR 6921495 ENCODE Processing Pipeline b8830e0b821e0346e8af795bde9f86f4 https://www.encodeproject.org/files/ENCFF186ZMA/@@download/ENCFF186ZMA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF402AKR bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF985MWI 5805742 ENCODE Processing Pipeline 7be640e4784d373a19992506b11363e1 https://www.encodeproject.org/files/ENCFF402AKR/@@download/ENCFF402AKR.bed.gz hg19 released borderline replicate concordance ENCFF501HHH bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF614UDN 6888803 ENCODE Processing Pipeline 102e8db0c265309d21785fda27d20f8c https://www.encodeproject.org/files/ENCFF501HHH/@@download/ENCFF501HHH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF785OWU bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528XYJ 7180910 ENCODE Processing Pipeline 4299f06defb42a55a909733df89b1596 https://www.encodeproject.org/files/ENCFF785OWU/@@download/ENCFF785OWU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF607QZV bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 4202263 ENCODE Processing Pipeline 35d64c561d4e98910bb0eb0599d6f9b4 https://www.encodeproject.org/files/ENCFF607QZV/@@download/ENCFF607QZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF115IZR bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF638LOJ 7183282 ENCODE Processing Pipeline 2570a668c82e35b00ac29a80d2cacaba https://www.encodeproject.org/files/ENCFF115IZR/@@download/ENCFF115IZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF931VDE bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF723EYG 6954253 ENCODE Processing Pipeline 725d02df0dc4f668c0d26222f06834fd https://www.encodeproject.org/files/ENCFF931VDE/@@download/ENCFF931VDE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF086HCP bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF020EIS, ENCFF447KVS, ENCFF823USR 7158938 ENCODE Processing Pipeline 9aa3bdff9c05546a2d675a79f4bba726 https://www.encodeproject.org/files/ENCFF086HCP/@@download/ENCFF086HCP.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF567MQM bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 4952334 ENCODE Processing Pipeline 14bcc8dd6f42a19f81af4b33a4bb1706 https://www.encodeproject.org/files/ENCFF567MQM/@@download/ENCFF567MQM.bed.gz hg19 released low read length ENCFF750GSF bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 5126280 ENCODE Processing Pipeline 30f8100ecdac18918e2280d601391371 https://www.encodeproject.org/files/ENCFF750GSF/@@download/ENCFF750GSF.bed.gz hg19 archived low read length ENCFF742QVY bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF593HGL 6516160 ENCODE Processing Pipeline 4289acf52cedc6b18d7cd31dd9344bf5 https://www.encodeproject.org/files/ENCFF742QVY/@@download/ENCFF742QVY.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF144UTI bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF324BHS, ENCFF999EQI 6848962 ENCODE Processing Pipeline 6f0113d9d68f87fd86f951dafcfb078f https://www.encodeproject.org/files/ENCFF144UTI/@@download/ENCFF144UTI.bed.gz hg19 released ENCFF452CEM bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 2 ENCFF051LWI, ENCFF204XLM 7193583 ENCODE Processing Pipeline db70e968a32451c5251dbc5acdc4e646 https://www.encodeproject.org/files/ENCFF452CEM/@@download/ENCFF452CEM.bed.gz hg19 released ENCFF750HPK bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF824TEZ, ENCFF999EQI 6194499 ENCODE Processing Pipeline 8db57f551c47f3300175716720339e63 https://www.encodeproject.org/files/ENCFF750HPK/@@download/ENCFF750HPK.bed.gz hg19 released borderline replicate concordance ENCFF387DEN bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF736OGN 5785437 ENCODE Processing Pipeline 7426178d9d90a5cffc9096eb11cdb189 https://www.encodeproject.org/files/ENCFF387DEN/@@download/ENCFF387DEN.bed.gz hg19 released borderline replicate concordance ENCFF519AMH bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF525DEV 4940262 ENCODE Processing Pipeline 5af1f616d2e60b6aeaad413f0f5e6ff5 https://www.encodeproject.org/files/ENCFF519AMH/@@download/ENCFF519AMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF321JQC bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF423QHQ, ENCFF629SZV 5150689 ENCODE Processing Pipeline 0ff9e0014613f93f25fa441629d6bad6 https://www.encodeproject.org/files/ENCFF321JQC/@@download/ENCFF321JQC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF695CJR bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 4894410 ENCODE Processing Pipeline f0447a1732c7b69f42bddd84dc11d400 https://www.encodeproject.org/files/ENCFF695CJR/@@download/ENCFF695CJR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF566ZXA bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 5116844 ENCODE Processing Pipeline b13346267616a6fd4bb07856b17a66f8 https://www.encodeproject.org/files/ENCFF566ZXA/@@download/ENCFF566ZXA.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF145RHD bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF735MSB 3639484 ENCODE Processing Pipeline 2fa180c4b4cbade76705e4d2ff5d81f3 https://www.encodeproject.org/files/ENCFF145RHD/@@download/ENCFF145RHD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF381HBX bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4173252 ENCODE Processing Pipeline ce09c9ade44c240c9999ad04a2f8b0da https://www.encodeproject.org/files/ENCFF381HBX/@@download/ENCFF381HBX.bed.gz hg19 released low read length, low read depth ENCFF198VHZ bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4377234 ENCODE Processing Pipeline 26a8b20b0e388c2e0b8de7695c1ac868 https://www.encodeproject.org/files/ENCFF198VHZ/@@download/ENCFF198VHZ.bed.gz hg19 archived low read length, low read depth ENCFF050FWJ bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 2 ENCFF262KHM, ENCFF313NWV 6409186 ENCODE Processing Pipeline d3f612216c91518b7a870c5b288a9ed3 https://www.encodeproject.org/files/ENCFF050FWJ/@@download/ENCFF050FWJ.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF737CTQ bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF424VMX, ENCFF939XHK 4808199 ENCODE Processing Pipeline ae1ebc83660c2e4e0a3262601ca989cd https://www.encodeproject.org/files/ENCFF737CTQ/@@download/ENCFF737CTQ.bed.gz hg19 released low read length, low read depth ENCFF719GJP bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF449NNE, ENCFF794JSD 6416388 ENCODE Processing Pipeline 5230bc97fb13b74944790369817f78e9 https://www.encodeproject.org/files/ENCFF719GJP/@@download/ENCFF719GJP.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF307KRD bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 2707163 ENCODE Processing Pipeline 2f5800e66ceebed018a31ec8f28b889e https://www.encodeproject.org/files/ENCFF307KRD/@@download/ENCFF307KRD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF431PAS bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 2 ENCFF165PBN, ENCFF332ZMN, ENCFF705NOL 6872614 ENCODE Processing Pipeline 79a61ed0d249667ef8f1873e4b6707cd https://www.encodeproject.org/files/ENCFF431PAS/@@download/ENCFF431PAS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF075DYV bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 2 ENCFF373IJK, ENCFF419SJQ 6482988 ENCODE Processing Pipeline b4263f8188f33604a937ef0883eb06a8 https://www.encodeproject.org/files/ENCFF075DYV/@@download/ENCFF075DYV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF507JPU bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 6761455 ENCODE Processing Pipeline 192e9a0745904e52ee8620b8be176c1b https://www.encodeproject.org/files/ENCFF507JPU/@@download/ENCFF507JPU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF251WTV bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF458NRE 7164505 ENCODE Processing Pipeline e00a453ccca03e05d1020e64e7f2bc28 https://www.encodeproject.org/files/ENCFF251WTV/@@download/ENCFF251WTV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF506ZBZ bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 6818155 ENCODE Processing Pipeline 608eaff7ddd2e050aa1865b7cbf368e2 https://www.encodeproject.org/files/ENCFF506ZBZ/@@download/ENCFF506ZBZ.bed.gz hg19 released ENCFF152FPH bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF656QRB, ENCFF880DIZ 4040861 ENCODE Processing Pipeline 0cae1d7e990f72777ddc0e9fab1cd9a6 https://www.encodeproject.org/files/ENCFF152FPH/@@download/ENCFF152FPH.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF707USK bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF560UCX 6653173 ENCODE Processing Pipeline d3b9e6c764774a71e171e6ae96d52e22 https://www.encodeproject.org/files/ENCFF707USK/@@download/ENCFF707USK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF001XLS bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 842901 John Stamatoyannopoulos, UW ef4b0ee3401bb8c942782a4352a20cdd https://www.encodeproject.org/files/ENCFF001XLS/@@download/ENCFF001XLS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF671VPQ bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 3970636 ENCODE Processing Pipeline 6c79784d63c63948066e481adf2d8f16 https://www.encodeproject.org/files/ENCFF671VPQ/@@download/ENCFF671VPQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF718AFD bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 2 ENCFF579IUE, ENCFF879OQC 5040348 ENCODE Processing Pipeline 0ce9c9477d4487d493a5e07f3bc934fb https://www.encodeproject.org/files/ENCFF718AFD/@@download/ENCFF718AFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF020AOB bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 2 ENCFF548ORK, ENCFF834TUP 6509636 ENCODE Processing Pipeline f17aecc21850d6d815c28196a603ebca https://www.encodeproject.org/files/ENCFF020AOB/@@download/ENCFF020AOB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF786SHU bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF690URW 6674084 ENCODE Processing Pipeline 5ffc9373da303fbbce7ff3bcee792941 https://www.encodeproject.org/files/ENCFF786SHU/@@download/ENCFF786SHU.bed.gz hg19 released low read depth ENCFF479MVC bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF455VOE, ENCFF572OMD 5043027 ENCODE Processing Pipeline faae7e59d41b29ecf813dcbfe2b03a9a https://www.encodeproject.org/files/ENCFF479MVC/@@download/ENCFF479MVC.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF630COY bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 2 ENCFF937IZT 6553076 ENCODE Processing Pipeline 33d5c35d81b522701fc3aff90be77994 https://www.encodeproject.org/files/ENCFF630COY/@@download/ENCFF630COY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF644IGZ bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF075MEV 6763227 ENCODE Processing Pipeline f121abfa76fc591f5968852a631f0ecb https://www.encodeproject.org/files/ENCFF644IGZ/@@download/ENCFF644IGZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF553DKF bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF096KCE, ENCFF654YMV 5719907 ENCODE Processing Pipeline 09c1b8b2d3e3f385722d9b3e67922805 https://www.encodeproject.org/files/ENCFF553DKF/@@download/ENCFF553DKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF510LBP bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF262FGR 6310132 ENCODE Processing Pipeline c994fdd3e59da30e42195e7369fb9984 https://www.encodeproject.org/files/ENCFF510LBP/@@download/ENCFF510LBP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF236MQY bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 6878077 ENCODE Processing Pipeline d4c2a4c93af93830b68d3592c165b9df https://www.encodeproject.org/files/ENCFF236MQY/@@download/ENCFF236MQY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF480NXP bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF760DHW, ENCFF807RZI 6242908 ENCODE Processing Pipeline 9fd2f9158d669bdb9505415b01fedae1 https://www.encodeproject.org/files/ENCFF480NXP/@@download/ENCFF480NXP.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF615UXP bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 7037910 ENCODE Processing Pipeline addba1fd536484c460b922872ee88e88 https://www.encodeproject.org/files/ENCFF615UXP/@@download/ENCFF615UXP.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF501HAG bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF400XIQ 5821870 ENCODE Processing Pipeline 1750bc311afac8615c8af3816673b3c9 https://www.encodeproject.org/files/ENCFF501HAG/@@download/ENCFF501HAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF707CDO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 7127888 ENCODE Processing Pipeline 4dcaba83d4d91c73c9e927c32207b2d4 https://www.encodeproject.org/files/ENCFF707CDO/@@download/ENCFF707CDO.bed.gz hg19 released ENCFF751TVZ bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 2 ENCFF182WHU, ENCFF333HHV 6806871 ENCODE Processing Pipeline d4b38de1ea1f89063da695905651e258 https://www.encodeproject.org/files/ENCFF751TVZ/@@download/ENCFF751TVZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF141MCC bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 6486394 ENCODE Processing Pipeline bddf5b68e8a40ac56a424d7d581756fa https://www.encodeproject.org/files/ENCFF141MCC/@@download/ENCFF141MCC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF244DVA bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF570TFE 6267350 ENCODE Processing Pipeline 4db9f776366de457f06b287d42fe57af https://www.encodeproject.org/files/ENCFF244DVA/@@download/ENCFF244DVA.bed.gz hg19 released antibody characterized with exemption ENCFF420CVJ bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF635IBY 3845374 ENCODE Processing Pipeline 0d0f8815058560c5cf3f8d737793d7c3 https://www.encodeproject.org/files/ENCFF420CVJ/@@download/ENCFF420CVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF966PVP bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF578XGS, ENCFF766UVZ 5353779 ENCODE Processing Pipeline ee84774d037dfcfcef7d63ceca958ef7 https://www.encodeproject.org/files/ENCFF966PVP/@@download/ENCFF966PVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF482ZCR bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF995FJU 5673202 ENCODE Processing Pipeline 114d490d19de1ef1b233e181f964c94e https://www.encodeproject.org/files/ENCFF482ZCR/@@download/ENCFF482ZCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF994IJB bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF749CGY, ENCFF864ASU 4395024 ENCODE Processing Pipeline fef3492e5f3a79eafdc53357e6a43d7e https://www.encodeproject.org/files/ENCFF994IJB/@@download/ENCFF994IJB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF885YBC bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF940TNY 6671120 ENCODE Processing Pipeline 3c9b0642721801fa34d7567481bd8f30 https://www.encodeproject.org/files/ENCFF885YBC/@@download/ENCFF885YBC.bed.gz hg19 released ENCFF563QBT bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF562COY 6838700 ENCODE Processing Pipeline 47e85c613e641263ed4641a1ac76de4d https://www.encodeproject.org/files/ENCFF563QBT/@@download/ENCFF563QBT.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF591LXN bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF960JYT, ENCFF963XWS 5623587 ENCODE Processing Pipeline 21ce3cd93a859b9e3293d43edeb3b786 https://www.encodeproject.org/files/ENCFF591LXN/@@download/ENCFF591LXN.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF521SLC bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF223CHE 6469898 ENCODE Processing Pipeline 1d1d352dddf503d50316e7ee49e9ee95 https://www.encodeproject.org/files/ENCFF521SLC/@@download/ENCFF521SLC.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF996VOF bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF392VDD 3689177 ENCODE Processing Pipeline c9dd6ff51d059e1f979716b9efb805d9 https://www.encodeproject.org/files/ENCFF996VOF/@@download/ENCFF996VOF.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF333ZRM bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU 4006533 ENCODE Processing Pipeline f820d162981ee44761af9e9e7721d791 https://www.encodeproject.org/files/ENCFF333ZRM/@@download/ENCFF333ZRM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF216OCU bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF746RLX 5570790 ENCODE Processing Pipeline 8c6f2b5a870cb7eebd87f84e106a7e17 https://www.encodeproject.org/files/ENCFF216OCU/@@download/ENCFF216OCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF091SVZ bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 2 ENCFF152YRC, ENCFF262CJE, ENCFF506DFV 6856226 ENCODE Processing Pipeline 4e7a4ded12661478c26f98ae7f2cf478 https://www.encodeproject.org/files/ENCFF091SVZ/@@download/ENCFF091SVZ.bed.gz hg19 released ENCFF678BIU bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 3364966 ENCODE Processing Pipeline d6c07a3b94a1fe925fb64986b72cb4d2 https://www.encodeproject.org/files/ENCFF678BIU/@@download/ENCFF678BIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF261TNJ bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 6196483 ENCODE Processing Pipeline 9671e3446e9e32e48a778781a5077bde https://www.encodeproject.org/files/ENCFF261TNJ/@@download/ENCFF261TNJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF324WHA bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 6577461 ENCODE Processing Pipeline 383eeeeeb7dac3f197aa9d7d9a110d35 https://www.encodeproject.org/files/ENCFF324WHA/@@download/ENCFF324WHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF255VCC bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 6398990 ENCODE Processing Pipeline 7344145cc93f4211f897581fcc9e10b5 https://www.encodeproject.org/files/ENCFF255VCC/@@download/ENCFF255VCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF905FMJ bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF694EPR 4633715 ENCODE Processing Pipeline e9b1b628efd91bd2cf068be3eab1e568 https://www.encodeproject.org/files/ENCFF905FMJ/@@download/ENCFF905FMJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF824LLG bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF745ITX 6799416 ENCODE Processing Pipeline 92709d3ef9352e7d58cbb00452eef80f https://www.encodeproject.org/files/ENCFF824LLG/@@download/ENCFF824LLG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF730DRK bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF594WOK, ENCFF922JGL 4192638 ENCODE Processing Pipeline e486321389bad03272e7499f7d4b681c https://www.encodeproject.org/files/ENCFF730DRK/@@download/ENCFF730DRK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF467EXO bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF098EOS, ENCFF325CNX 5193552 ENCODE Processing Pipeline 63bc6d85f90c43c4f9f17146535f7253 https://www.encodeproject.org/files/ENCFF467EXO/@@download/ENCFF467EXO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF976RBY bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 7083861 ENCODE Processing Pipeline 4e66d1f98e7e419ea59e2f50a4f92889 https://www.encodeproject.org/files/ENCFF976RBY/@@download/ENCFF976RBY.bed.gz hg19 released mild to moderate bottlenecking ENCFF271VJM bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF528MPO 7106395 ENCODE Processing Pipeline 84ebb1ff1b92e6d1b5fedd689f4556a2 https://www.encodeproject.org/files/ENCFF271VJM/@@download/ENCFF271VJM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF078MOK bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF541CNR 7264390 ENCODE Processing Pipeline 97864feb20bf6b96b21617bc06494fe1 https://www.encodeproject.org/files/ENCFF078MOK/@@download/ENCFF078MOK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF631VBZ bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF157JVZ 6645031 ENCODE Processing Pipeline 21f91444afdea51098b2b61f7d3b0470 https://www.encodeproject.org/files/ENCFF631VBZ/@@download/ENCFF631VBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF583BIS bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 6237077 ENCODE Processing Pipeline e4c678d2343369f34a9f466600698885 https://www.encodeproject.org/files/ENCFF583BIS/@@download/ENCFF583BIS.bed.gz hg19 released mild to moderate bottlenecking ENCFF428CYD bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF574BHM 6958018 ENCODE Processing Pipeline 945844f7df837b5e1a17a7aeab2228a5 https://www.encodeproject.org/files/ENCFF428CYD/@@download/ENCFF428CYD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF565ZVL bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF787PBQ 6374326 ENCODE Processing Pipeline 4b9eb0d586266256c48f0eb1369029f9 https://www.encodeproject.org/files/ENCFF565ZVL/@@download/ENCFF565ZVL.bed.gz hg19 released low read depth ENCFF917EWZ bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF844JHW, ENCFF880YHS 4694335 ENCODE Processing Pipeline 6979d042bfb430578e2aa0cfef2a976e https://www.encodeproject.org/files/ENCFF917EWZ/@@download/ENCFF917EWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF266JIG bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF158ZFF, ENCFF775HLS, ENCFF864HWM 7207521 ENCODE Processing Pipeline d7dddbb66cdf03e475c7f4d2d47ab5a3 https://www.encodeproject.org/files/ENCFF266JIG/@@download/ENCFF266JIG.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF568NCD bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF562BIX, ENCFF578XGS 5596426 ENCODE Processing Pipeline 13927fba3349d0aa440f943efb87559b https://www.encodeproject.org/files/ENCFF568NCD/@@download/ENCFF568NCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF837FJB bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 2 ENCFF023YTY, ENCFF054MPE 5916062 ENCODE Processing Pipeline 0862091ce74776d10642d4dcbc146d70 https://www.encodeproject.org/files/ENCFF837FJB/@@download/ENCFF837FJB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF782NYK bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF844SVF 6894881 ENCODE Processing Pipeline 66db291835332e88980b79fb235891f9 https://www.encodeproject.org/files/ENCFF782NYK/@@download/ENCFF782NYK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF691NVX bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 5980204 ENCODE Processing Pipeline b31ee325e890e064436b069b008e24a3 https://www.encodeproject.org/files/ENCFF691NVX/@@download/ENCFF691NVX.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF688ELV bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 5214652 ENCODE Processing Pipeline 1e982fdcdd0d5a33ec084f5e05996c50 https://www.encodeproject.org/files/ENCFF688ELV/@@download/ENCFF688ELV.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF427NOB bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF799SDQ 7065200 ENCODE Processing Pipeline 0370b4b4e2d0e8e1dbeb063ebc9cc43e https://www.encodeproject.org/files/ENCFF427NOB/@@download/ENCFF427NOB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF472PYP bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF004XRU 6342086 ENCODE Processing Pipeline 797184082d3583c3cd3187a2b3cb1f65 https://www.encodeproject.org/files/ENCFF472PYP/@@download/ENCFF472PYP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF145XAX bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF159KKU 6232868 ENCODE Processing Pipeline 3631cbbf61da180f58d5ac2991479cba https://www.encodeproject.org/files/ENCFF145XAX/@@download/ENCFF145XAX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF985CPE bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF216HOT 6783551 ENCODE Processing Pipeline 4b94d3088a0d26dbb0efc4bc03853839 https://www.encodeproject.org/files/ENCFF985CPE/@@download/ENCFF985CPE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF397VOW bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF308WNU 5396166 ENCODE Processing Pipeline 2fb2202576ba8df823a78813e0b45aba https://www.encodeproject.org/files/ENCFF397VOW/@@download/ENCFF397VOW.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF669CKL bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 5169710 ENCODE Processing Pipeline d898317747cf0dc762e0cc49c37d2566 https://www.encodeproject.org/files/ENCFF669CKL/@@download/ENCFF669CKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF040DGA bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 5183776 ENCODE Processing Pipeline d9c3da1be91de8c8c2e9fa1a52c88cdc https://www.encodeproject.org/files/ENCFF040DGA/@@download/ENCFF040DGA.bed.gz hg19 released low read length, low read depth ENCFF418WIA bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7030043 ENCODE Processing Pipeline 548036a1564917488e5a98e4507384f0 https://www.encodeproject.org/files/ENCFF418WIA/@@download/ENCFF418WIA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF658NRV bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF804JJB 6516448 ENCODE Processing Pipeline 2f52f945cba5afdefe9c831542968021 https://www.encodeproject.org/files/ENCFF658NRV/@@download/ENCFF658NRV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF614KPG bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF216LIY, ENCFF567WDW, ENCFF618RNL 6958291 ENCODE Processing Pipeline fc1095e01fe1d903c820780cba8e5e30 https://www.encodeproject.org/files/ENCFF614KPG/@@download/ENCFF614KPG.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF057VLD bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2017-11-14 ENCODE 2 ENCFF160VXC, ENCFF502AYE, ENCFF834TUP 6954033 ENCODE Processing Pipeline ede7f808e6c666a30bbc245591fb017f https://www.encodeproject.org/files/ENCFF057VLD/@@download/ENCFF057VLD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF813JVU bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 6793802 ENCODE Processing Pipeline f2494b346b270c93b3bc1584d8375fab https://www.encodeproject.org/files/ENCFF813JVU/@@download/ENCFF813JVU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF904CJM bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 2 ENCFF554KBV, ENCFF581ZJL 6838004 ENCODE Processing Pipeline 8c3b46431cc070beac03de662698d275 https://www.encodeproject.org/files/ENCFF904CJM/@@download/ENCFF904CJM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF694HVC bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF144XUD, ENCFF732BTE 5299854 ENCODE Processing Pipeline 1886c4828e140c19ec8738e571cf0ed1 https://www.encodeproject.org/files/ENCFF694HVC/@@download/ENCFF694HVC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF929NFJ bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF083RZJ, ENCFF272YQK 5491181 ENCODE Processing Pipeline e1ee9fd1d3080877787ba93b681701fb https://www.encodeproject.org/files/ENCFF929NFJ/@@download/ENCFF929NFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF851UVY bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF760DHW, ENCFF922YTF 6466064 ENCODE Processing Pipeline fa55ce31f0934c16ae9af3279a456565 https://www.encodeproject.org/files/ENCFF851UVY/@@download/ENCFF851UVY.bed.gz hg19 released borderline replicate concordance ENCFF706ONY bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF870AMF 5478238 ENCODE Processing Pipeline 022d8a2670228f69d1e6f043311b001e https://www.encodeproject.org/files/ENCFF706ONY/@@download/ENCFF706ONY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF288DTP bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF339ZHE, ENCFF760DHW 5578012 ENCODE Processing Pipeline 291feff4cc8a0ee10ea9aa18dc8d0ac7 https://www.encodeproject.org/files/ENCFF288DTP/@@download/ENCFF288DTP.bed.gz hg19 released mild to moderate bottlenecking ENCFF191TQD bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3666893 ENCODE Processing Pipeline 1dbb0ee0b20c3bfca65897da6ddd66b2 https://www.encodeproject.org/files/ENCFF191TQD/@@download/ENCFF191TQD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF830BYO bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3770088 ENCODE Processing Pipeline fe9c7b6828ab89faf53c0114b285c86b https://www.encodeproject.org/files/ENCFF830BYO/@@download/ENCFF830BYO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF547CJU bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF371EAK 6818854 ENCODE Processing Pipeline c8f00a747bb5440770fecf1882eb97d0 https://www.encodeproject.org/files/ENCFF547CJU/@@download/ENCFF547CJU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF290WHA bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6795268 ENCODE Processing Pipeline 03d4b77c9f3bbca774662f96b3ff8334 https://www.encodeproject.org/files/ENCFF290WHA/@@download/ENCFF290WHA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF110VMS bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6904209 ENCODE Processing Pipeline cca853464852b01e18ceb73ff9c13383 https://www.encodeproject.org/files/ENCFF110VMS/@@download/ENCFF110VMS.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF713XEQ bed narrowPeak peaks ENCSR538RDA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF560-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF679QQL 6291482 ENCODE Processing Pipeline 63f877f2b4045d1cce4cc9224be10d9b https://www.encodeproject.org/files/ENCFF713XEQ/@@download/ENCFF713XEQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF915WBL bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF996TTV 6636351 ENCODE Processing Pipeline aa6214bf9cc3688a95b0a0237f464f83 https://www.encodeproject.org/files/ENCFF915WBL/@@download/ENCFF915WBL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF799NMK bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 6794130 ENCODE Processing Pipeline dc1143c5fb672ca9b5a0bf818538506d https://www.encodeproject.org/files/ENCFF799NMK/@@download/ENCFF799NMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF225KYS bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF869KUX 6832143 ENCODE Processing Pipeline 1cdd3974853b9cfc638c15630be886dd https://www.encodeproject.org/files/ENCFF225KYS/@@download/ENCFF225KYS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF146RFU bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF338OPD 7059504 ENCODE Processing Pipeline e308ab9b00f074b9bdd6c2e1e3d5cf63 https://www.encodeproject.org/files/ENCFF146RFU/@@download/ENCFF146RFU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF752PUJ bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV 6735798 ENCODE Processing Pipeline a17e78b385eb53e4fe51aa779174fd22 https://www.encodeproject.org/files/ENCFF752PUJ/@@download/ENCFF752PUJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF922DZD bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF132TRH, ENCFF182WHU 7215265 ENCODE Processing Pipeline dcb2e55d24319300d5ed986e1bc10247 https://www.encodeproject.org/files/ENCFF922DZD/@@download/ENCFF922DZD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF804JRA bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF827OOM 4445975 ENCODE Processing Pipeline 3a9ddd657f91b478fa86ab2d1e9396b2 https://www.encodeproject.org/files/ENCFF804JRA/@@download/ENCFF804JRA.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF017QGA bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 6965848 ENCODE Processing Pipeline 95d97fa1aec3eff301de1f4de9b522a7 https://www.encodeproject.org/files/ENCFF017QGA/@@download/ENCFF017QGA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF067KHY bed narrowPeak peaks ENCSR443MVV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM4-human DNA formaldehyde False 2017-02-10 ENCODE 2 ENCFF623SOH 6885093 ENCODE Processing Pipeline bef9e10b7eb52255bd289bb20a549b4b https://www.encodeproject.org/files/ENCFF067KHY/@@download/ENCFF067KHY.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF791XWT bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF413KOS 6937225 ENCODE Processing Pipeline 4dfcfaceafdc19719d513b9f3b800fed https://www.encodeproject.org/files/ENCFF791XWT/@@download/ENCFF791XWT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF526YPV bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6327058 ENCODE Processing Pipeline 2f41dc28c750e8240fc22a540db5efc3 https://www.encodeproject.org/files/ENCFF526YPV/@@download/ENCFF526YPV.bed.gz hg19 released mild to moderate bottlenecking ENCFF181NXH bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6531032 ENCODE Processing Pipeline d7a9067a72422c7b62771d5fb948ed21 https://www.encodeproject.org/files/ENCFF181NXH/@@download/ENCFF181NXH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF475IAW bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF171DED 6950323 ENCODE Processing Pipeline 0f0e403330e4703cba7a2505524ebace https://www.encodeproject.org/files/ENCFF475IAW/@@download/ENCFF475IAW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF971KNY bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 2 ENCFF197XMF, ENCFF999EQI 6114786 ENCODE Processing Pipeline 804eb3bf0ee83f6438380e6fdce3b5d1 https://www.encodeproject.org/files/ENCFF971KNY/@@download/ENCFF971KNY.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF779HVA bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 2 ENCFF182WHU, ENCFF494YCC 6410845 ENCODE Processing Pipeline 2f5e5fad13fd3735c8e3ac48a9587ce2 https://www.encodeproject.org/files/ENCFF779HVA/@@download/ENCFF779HVA.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF188GHO bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 6860119 ENCODE Processing Pipeline fd59c3000d29184e8110f9bdc7c6ecc8 https://www.encodeproject.org/files/ENCFF188GHO/@@download/ENCFF188GHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF819QEC bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF357QDN, ENCFF801GGG, ENCFF881DVS 7097612 ENCODE Processing Pipeline 1164c16e05b649e5ba784c2f15a18189 https://www.encodeproject.org/files/ENCFF819QEC/@@download/ENCFF819QEC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF238LEE bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF261NWL 6558752 ENCODE Processing Pipeline f34ba1e98f0ed0de5178dc137b485a83 https://www.encodeproject.org/files/ENCFF238LEE/@@download/ENCFF238LEE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF834BOR bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF393RUJ 5406547 ENCODE Processing Pipeline 295d2864b809ecf79aa410e9a0825b44 https://www.encodeproject.org/files/ENCFF834BOR/@@download/ENCFF834BOR.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF581CAJ bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF150NDP 6919299 ENCODE Processing Pipeline cac769629d17c55af5dcb641f96e5ec3 https://www.encodeproject.org/files/ENCFF581CAJ/@@download/ENCFF581CAJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF326RNA bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF017YFK, ENCFF261DNQ, ENCFF956QBZ 5545311 ENCODE Processing Pipeline 82d0574b5b05e75ab2e3490417e6043d https://www.encodeproject.org/files/ENCFF326RNA/@@download/ENCFF326RNA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF656LKP bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF325CNX, ENCFF806CJS 5732253 ENCODE Processing Pipeline 4cbc1e54392aa9472a8b9c37e4fbbb43 https://www.encodeproject.org/files/ENCFF656LKP/@@download/ENCFF656LKP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF394TJZ bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF529BVI, ENCFF772FBN, ENCFF799UMW 7185318 ENCODE Processing Pipeline 6a104764cb58aa2147a1fb511325a5ac https://www.encodeproject.org/files/ENCFF394TJZ/@@download/ENCFF394TJZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF037LWJ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF221JFQ, ENCFF584SKU 5373755 ENCODE Processing Pipeline 7debde54ef88e8ffa439ba7ffd770114 https://www.encodeproject.org/files/ENCFF037LWJ/@@download/ENCFF037LWJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF690BQH bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 2 ENCFF347ZFD 6773414 ENCODE Processing Pipeline 33b515bdeba4bb3327026455865eb281 https://www.encodeproject.org/files/ENCFF690BQH/@@download/ENCFF690BQH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF938MOR bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 6540097 ENCODE Processing Pipeline cbc8a15cdab8f4e87b0f7d36e768ecd3 https://www.encodeproject.org/files/ENCFF938MOR/@@download/ENCFF938MOR.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF619KMH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6785961 ENCODE Processing Pipeline 490afc63a5af3a432f36dcda78a69445 https://www.encodeproject.org/files/ENCFF619KMH/@@download/ENCFF619KMH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF122FWH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6858089 ENCODE Processing Pipeline 9cd613d51d776b7ba4ac1c3f13831780 https://www.encodeproject.org/files/ENCFF122FWH/@@download/ENCFF122FWH.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF087ZHG bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF720XTH, ENCFF922JGL 4742599 ENCODE Processing Pipeline 961998556f5c583d5de4ee3724b5d690 https://www.encodeproject.org/files/ENCFF087ZHG/@@download/ENCFF087ZHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF151CJE bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 2 ENCFF023YTY, ENCFF069NTQ 6233914 ENCODE Processing Pipeline efc1bdb15baed8bec34c5f06ea5db5be https://www.encodeproject.org/files/ENCFF151CJE/@@download/ENCFF151CJE.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF595AYG bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF060RLW 6686813 ENCODE Processing Pipeline 657235201ef9884816e5dcc2bbf8eeb3 https://www.encodeproject.org/files/ENCFF595AYG/@@download/ENCFF595AYG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF425TQN bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF847CAU 7194910 ENCODE Processing Pipeline 54501a8fe8f39598257532bd91333c5d https://www.encodeproject.org/files/ENCFF425TQN/@@download/ENCFF425TQN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF432CDN bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 6786469 ENCODE Processing Pipeline 4edfb0aa2d1440a8882779dda099addf https://www.encodeproject.org/files/ENCFF432CDN/@@download/ENCFF432CDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF652PGK bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF094UHU 6547971 ENCODE Processing Pipeline 680510c3082b245c06a4c927a0a47499 https://www.encodeproject.org/files/ENCFF652PGK/@@download/ENCFF652PGK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF765WNF bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF449NNE, ENCFF808IEJ, ENCFF999EQI 6768355 ENCODE Processing Pipeline 14566d1ce42abf4a6e38dd9c8145045b https://www.encodeproject.org/files/ENCFF765WNF/@@download/ENCFF765WNF.bed.gz hg19 released ENCFF316OES bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF384ART 6376587 ENCODE Processing Pipeline fa6381e90fda9657357f4fb93071d0ed https://www.encodeproject.org/files/ENCFF316OES/@@download/ENCFF316OES.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF331IWR bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 2 ENCFF139VKC, ENCFF746MMS 6433989 ENCODE Processing Pipeline 8b87c22a1102272fd3558db70746d291 https://www.encodeproject.org/files/ENCFF331IWR/@@download/ENCFF331IWR.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF328KFN bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 7070560 ENCODE Processing Pipeline d09fa112a2f46a52ff767bac569d3e8d https://www.encodeproject.org/files/ENCFF328KFN/@@download/ENCFF328KFN.bed.gz hg19 released ENCFF860KMP bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 6406002 ENCODE Processing Pipeline d30d79c50d0e12b2f2743ff47d3af71d https://www.encodeproject.org/files/ENCFF860KMP/@@download/ENCFF860KMP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF360EGT bed narrowPeak peaks ENCSR754MUD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SKI-human DNA False 2018-01-26 ENCODE 2 ENCFF988PYL, ENCFF999EQI 6770974 ENCODE Processing Pipeline 026bc599ba6288114d3db670ca20dea2 https://www.encodeproject.org/files/ENCFF360EGT/@@download/ENCFF360EGT.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF900JOP bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF789HSB 6119461 ENCODE Processing Pipeline 44e92bb8ef4eb9328e1065714a0becfe https://www.encodeproject.org/files/ENCFF900JOP/@@download/ENCFF900JOP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF599KFI bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 2 ENCFF221UBB, ENCFF732BTE 4089549 ENCODE Processing Pipeline 9fed76cfaf60548fc59c7b33016b8b37 https://www.encodeproject.org/files/ENCFF599KFI/@@download/ENCFF599KFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF621XNB bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF424DRA 6680124 ENCODE Processing Pipeline af8230bb817e3ab8a4573e8c29cd5531 https://www.encodeproject.org/files/ENCFF621XNB/@@download/ENCFF621XNB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF043LEZ bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF447XXO 5463413 ENCODE Processing Pipeline 430ce82183fe4f54630136fa36711237 https://www.encodeproject.org/files/ENCFF043LEZ/@@download/ENCFF043LEZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF345DIK bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 5978713 ENCODE Processing Pipeline a57a7b2e3e30800333e3ca4060d723c6 https://www.encodeproject.org/files/ENCFF345DIK/@@download/ENCFF345DIK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF387NRB bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF478LIY 6979954 ENCODE Processing Pipeline 463b08ba5a9165f99d7e2e37f49d2674 https://www.encodeproject.org/files/ENCFF387NRB/@@download/ENCFF387NRB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF636HOL bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF789IXD 5894402 ENCODE Processing Pipeline c8b1cd66b16a7c6238ccd407bb53b7a8 https://www.encodeproject.org/files/ENCFF636HOL/@@download/ENCFF636HOL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF958WJN bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 5481752 ENCODE Processing Pipeline 5e55b4a47a1adfdffea227c9ea0cf556 https://www.encodeproject.org/files/ENCFF958WJN/@@download/ENCFF958WJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF700GJA bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF376ISC, ENCFF506DFV 6027086 ENCODE Processing Pipeline 60055a48f7ef98a96310305a307328a8 https://www.encodeproject.org/files/ENCFF700GJA/@@download/ENCFF700GJA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF322PWJ bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 2 ENCFF377LXP, ENCFF581ZJL 6801753 ENCODE Processing Pipeline 2420fa96d885bfe037e9400bacf6af0d https://www.encodeproject.org/files/ENCFF322PWJ/@@download/ENCFF322PWJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF524ADR bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 6900017 ENCODE Processing Pipeline fe9024e9b222cd67f905db8441a16dc3 https://www.encodeproject.org/files/ENCFF524ADR/@@download/ENCFF524ADR.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF860LBQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 6939738 ENCODE Processing Pipeline 2fa824b16ec57e89bc5dd1fd3a482e7e https://www.encodeproject.org/files/ENCFF860LBQ/@@download/ENCFF860LBQ.bed.gz hg19 released borderline replicate concordance ENCFF145POH bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5466977 ENCODE Processing Pipeline 24d641fb0de8cbc78252718eaaf43720 https://www.encodeproject.org/files/ENCFF145POH/@@download/ENCFF145POH.bed.gz hg19 released low read length ENCFF575MOS bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5634715 ENCODE Processing Pipeline 37cdf712ea0817270071e52cbffc9b68 https://www.encodeproject.org/files/ENCFF575MOS/@@download/ENCFF575MOS.bed.gz hg19 archived low read length ENCFF396SZC bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU 5685701 ENCODE Processing Pipeline db309aea66c2b0348c6e5bc81d7be171 https://www.encodeproject.org/files/ENCFF396SZC/@@download/ENCFF396SZC.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF748SDI bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF902WES 6479114 ENCODE Processing Pipeline 59323832a6d3b6bd7011bbb22ef9202c https://www.encodeproject.org/files/ENCFF748SDI/@@download/ENCFF748SDI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF762SKC bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF125BUA 6522632 ENCODE Processing Pipeline 7aeea40d409261a3cb158127820a0060 https://www.encodeproject.org/files/ENCFF762SKC/@@download/ENCFF762SKC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF284OML bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 4163465 ENCODE Processing Pipeline 16f46cbe832639a29f8cd0e8298c06a5 https://www.encodeproject.org/files/ENCFF284OML/@@download/ENCFF284OML.bed.gz hg19 released low read length, low read depth ENCFF583UDD bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 5297343 ENCODE Processing Pipeline 700e439b8337491909faa99b1dd3e5b8 https://www.encodeproject.org/files/ENCFF583UDD/@@download/ENCFF583UDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF174MCF bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF910NGM 5397295 ENCODE Processing Pipeline 30f532ed213f19a383377aecaea5aa33 https://www.encodeproject.org/files/ENCFF174MCF/@@download/ENCFF174MCF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF875YEH bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF388FXV 7038756 ENCODE Processing Pipeline 4cb7fa434026190b21b35519433a772b https://www.encodeproject.org/files/ENCFF875YEH/@@download/ENCFF875YEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF974BNY bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF759NKM 6990508 ENCODE Processing Pipeline ec95858af083f5d7d2160a276779d0de https://www.encodeproject.org/files/ENCFF974BNY/@@download/ENCFF974BNY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF184RLT bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6445936 ENCODE Processing Pipeline 5e8bb8a3df0b18c40c7c5148f2e6e8fc https://www.encodeproject.org/files/ENCFF184RLT/@@download/ENCFF184RLT.bed.gz hg19 released antibody characterized with exemption ENCFF920MOI bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6599824 ENCODE Processing Pipeline 045916b3c64f2036f03faeea779d022d https://www.encodeproject.org/files/ENCFF920MOI/@@download/ENCFF920MOI.bed.gz hg19 archived antibody characterized with exemption ENCFF664JOM bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF077LKL, ENCFF321TUP, ENCFF806YIH 6533698 ENCODE Processing Pipeline 8fd2f46b0bf5c1b8d5cd806a36634425 https://www.encodeproject.org/files/ENCFF664JOM/@@download/ENCFF664JOM.bed.gz hg19 released antibody characterized with exemption ENCFF870DSA bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 7089816 ENCODE Processing Pipeline d154c929c75e48d94a7457c55991af23 https://www.encodeproject.org/files/ENCFF870DSA/@@download/ENCFF870DSA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF796TTQ bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF574DLY, ENCFF753PJC 5214941 ENCODE Processing Pipeline 18ff675f5cd6f15f3b9f9575aaf4debd https://www.encodeproject.org/files/ENCFF796TTQ/@@download/ENCFF796TTQ.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF652WXC bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 6775311 ENCODE Processing Pipeline 255864953a6693c48e10c5c5811564d7 https://www.encodeproject.org/files/ENCFF652WXC/@@download/ENCFF652WXC.bed.gz hg19 released mild to moderate bottlenecking ENCFF998CHH bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF148ROD 6372010 ENCODE Processing Pipeline 03e5cdb6a3717f88a30ab314abbbca12 https://www.encodeproject.org/files/ENCFF998CHH/@@download/ENCFF998CHH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF282QPK bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 6982761 ENCODE Processing Pipeline 5126fbc6f3bf70276250ace9b4e7a6cf https://www.encodeproject.org/files/ENCFF282QPK/@@download/ENCFF282QPK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF003ARN bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF287BIH, ENCFF968IOT 5674857 ENCODE Processing Pipeline 12931dfbd606e6f576996fb714500421 https://www.encodeproject.org/files/ENCFF003ARN/@@download/ENCFF003ARN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF924XCI bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF643GJU, ENCFF817NEK 4936186 ENCODE Processing Pipeline bebf42e412474d7e79ab36a89f60f77f https://www.encodeproject.org/files/ENCFF924XCI/@@download/ENCFF924XCI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF509ZUE bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF050MYB 6733082 ENCODE Processing Pipeline c832a0e327363787f3e9263a7771492a https://www.encodeproject.org/files/ENCFF509ZUE/@@download/ENCFF509ZUE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF994WPN bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF641CEP, ENCFF836GWP 5649219 ENCODE Processing Pipeline dd83f69db7a21a6d64dcf79127463941 https://www.encodeproject.org/files/ENCFF994WPN/@@download/ENCFF994WPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF706LNT bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 7049612 ENCODE Processing Pipeline ff995f9cd1c55eec79946c18067b474a https://www.encodeproject.org/files/ENCFF706LNT/@@download/ENCFF706LNT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF762IGQ bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF019SDP, ENCFF580VRU, ENCFF951UMF 6133889 ENCODE Processing Pipeline 455f7d09d9e43a51a9b8f881af54cf67 https://www.encodeproject.org/files/ENCFF762IGQ/@@download/ENCFF762IGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF186JXU bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 4948567 ENCODE Processing Pipeline 265da055467795a7eaa2550983ccbd02 https://www.encodeproject.org/files/ENCFF186JXU/@@download/ENCFF186JXU.bed.gz hg19 released low read length, borderline replicate concordance ENCFF533JJE bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 5168158 ENCODE Processing Pipeline 0a40f43f66e87af77fa6b37d4e25d8ca https://www.encodeproject.org/files/ENCFF533JJE/@@download/ENCFF533JJE.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF661PVV bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF911ZWN 6303156 ENCODE Processing Pipeline 0cf7ed584eb978b0fac7b02b8d9abe17 https://www.encodeproject.org/files/ENCFF661PVV/@@download/ENCFF661PVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF967CAZ bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 2 ENCFF287SKW, ENCFF986RIG 6954200 ENCODE Processing Pipeline 8b447b898ea55dce473bff838c277fe9 https://www.encodeproject.org/files/ENCFF967CAZ/@@download/ENCFF967CAZ.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF270KMF bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF304KBG 6361864 ENCODE Processing Pipeline 878c9c36dcd290a76f533f06f996aeb1 https://www.encodeproject.org/files/ENCFF270KMF/@@download/ENCFF270KMF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF606UFV bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 6919933 ENCODE Processing Pipeline a4987ffd1ba8dadf8170584cd35048f4 https://www.encodeproject.org/files/ENCFF606UFV/@@download/ENCFF606UFV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF588BMT bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 2 ENCFF645IUN, ENCFF834TUP 6948885 ENCODE Processing Pipeline b5cafb3c8c8896bbb798add0a04cb77c https://www.encodeproject.org/files/ENCFF588BMT/@@download/ENCFF588BMT.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF681CMB bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF180WYS, ENCFF641CEP 5819204 ENCODE Processing Pipeline 4ddb077d189adb2ff36f36687fabb5cf https://www.encodeproject.org/files/ENCFF681CMB/@@download/ENCFF681CMB.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF142SFP bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF536AHS, ENCFF609QFO, ENCFF655VZE 5191516 ENCODE Processing Pipeline b5034833863a6e906f673011c9c25685 https://www.encodeproject.org/files/ENCFF142SFP/@@download/ENCFF142SFP.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001XMA bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 547223 John Stamatoyannopoulos, UW 73909ab110e808d51fc2e7c5ac0716f5 https://www.encodeproject.org/files/ENCFF001XMA/@@download/ENCFF001XMA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF437UAR bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 2527386 ENCODE Processing Pipeline fedd7582605f939e4bdfb8920ec183b7 https://www.encodeproject.org/files/ENCFF437UAR/@@download/ENCFF437UAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF222WLA bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF730MQF 5831402 ENCODE Processing Pipeline 292a33d074157fe9cb5d3ea74e13f18b https://www.encodeproject.org/files/ENCFF222WLA/@@download/ENCFF222WLA.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF787GZZ bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF555DYC 6495302 ENCODE Processing Pipeline d5d77e13ad5c4f8e2b44eec2fd023e0d https://www.encodeproject.org/files/ENCFF787GZZ/@@download/ENCFF787GZZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF427ZLR bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 6995668 ENCODE Processing Pipeline 4842029b3a8be15a4b00cdf1afd5c83c https://www.encodeproject.org/files/ENCFF427ZLR/@@download/ENCFF427ZLR.bed.gz hg19 released mild to moderate bottlenecking ENCFF039TLE bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 7057786 ENCODE Processing Pipeline e7a48ad12d4aa555f12cff5d03654341 https://www.encodeproject.org/files/ENCFF039TLE/@@download/ENCFF039TLE.bed.gz hg19 archived mild to moderate bottlenecking ENCFF054XUN bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 6240427 ENCODE Processing Pipeline b8c9e196eda9c2502b0db38eb8279690 https://www.encodeproject.org/files/ENCFF054XUN/@@download/ENCFF054XUN.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF927BKR bed narrowPeak peaks ENCSR546KCN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-FOSL2-human DNA False 2016-06-13 ENCODE 2 ENCFF309VRW, ENCFF946OHC 6818553 ENCODE Processing Pipeline 06eb63fe8f8590dcd4c5de58d66e4e82 https://www.encodeproject.org/files/ENCFF927BKR/@@download/ENCFF927BKR.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF188UYW bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 2 ENCFF139MVO, ENCFF356LRY 6563813 ENCODE Processing Pipeline 152f4cc7ab9826b2bd18f6611a240141 https://www.encodeproject.org/files/ENCFF188UYW/@@download/ENCFF188UYW.bed.gz hg19 released missing genetic modification characterization ENCFF428ZAR bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 2 ENCFF600JYB, ENCFF999EQI 5809777 ENCODE Processing Pipeline e7e31fe469c8d81ed480abecd923c1b5 https://www.encodeproject.org/files/ENCFF428ZAR/@@download/ENCFF428ZAR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF831UOD bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF464JHD 6604766 ENCODE Processing Pipeline 790b956f44abc84fecef303637da4a01 https://www.encodeproject.org/files/ENCFF831UOD/@@download/ENCFF831UOD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF187APX bed narrowPeak peaks ENCSR233MWH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF670-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF286VPW 6036972 ENCODE Processing Pipeline cea3b79aeef9e55b46aedcbd7c83131e https://www.encodeproject.org/files/ENCFF187APX/@@download/ENCFF187APX.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF416SHN bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF340ZCE 6501286 ENCODE Processing Pipeline 3a3daee23157037cf71f16a351aed776 https://www.encodeproject.org/files/ENCFF416SHN/@@download/ENCFF416SHN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF499XUD bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF864CXQ 6920618 ENCODE Processing Pipeline 60812865225bf22cb440022b8d6a87e4 https://www.encodeproject.org/files/ENCFF499XUD/@@download/ENCFF499XUD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF096FPV bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 2 ENCFF287SKW, ENCFF640ZFH 6802246 ENCODE Processing Pipeline f5203c5698fefd6b48f9c515ad8427b2 https://www.encodeproject.org/files/ENCFF096FPV/@@download/ENCFF096FPV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF262ETY bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF583FAG, ENCFF606MZP 5884663 ENCODE Processing Pipeline d507c4a30f1faea190971029240013df https://www.encodeproject.org/files/ENCFF262ETY/@@download/ENCFF262ETY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF431WDE bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF707OMI 6870839 ENCODE Processing Pipeline e5fc1c2d917cf2a5d2c048a646dec6aa https://www.encodeproject.org/files/ENCFF431WDE/@@download/ENCFF431WDE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF258OQI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 2 ENCFF581ZJL, ENCFF972MSK 6502377 ENCODE Processing Pipeline de5c501ce55e29692ecdc1d0c60d8024 https://www.encodeproject.org/files/ENCFF258OQI/@@download/ENCFF258OQI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF918SQP bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF958YKJ 6182912 ENCODE Processing Pipeline d499eb652a0a5c516172d101524a585d https://www.encodeproject.org/files/ENCFF918SQP/@@download/ENCFF918SQP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF419TOT bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI 5887033 ENCODE Processing Pipeline 94c7eb37f002ccaf27c39240143d1ef1 https://www.encodeproject.org/files/ENCFF419TOT/@@download/ENCFF419TOT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF877WIO bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF296AFI 6745698 ENCODE Processing Pipeline a5279826cad779724aebb7bf14056e42 https://www.encodeproject.org/files/ENCFF877WIO/@@download/ENCFF877WIO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF914HFS bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF036FAR 6367683 ENCODE Processing Pipeline 6a0073376edf14d7961b9d997a2d30d1 https://www.encodeproject.org/files/ENCFF914HFS/@@download/ENCFF914HFS.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF084JTV bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF182IWX 6425326 ENCODE Processing Pipeline 7090a2dc6386d76264a90504f421aedc https://www.encodeproject.org/files/ENCFF084JTV/@@download/ENCFF084JTV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF056ABC bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF305MAN 7137493 ENCODE Processing Pipeline 734336633513e920a4515362315fe20d https://www.encodeproject.org/files/ENCFF056ABC/@@download/ENCFF056ABC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF648GNP bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 6703968 ENCODE Processing Pipeline aeace92b89e06d209a022e199914e5ce https://www.encodeproject.org/files/ENCFF648GNP/@@download/ENCFF648GNP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF466FRV bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF236UXG 6665407 ENCODE Processing Pipeline 75952aafe79bafb996d4ec2b95da7b9c https://www.encodeproject.org/files/ENCFF466FRV/@@download/ENCFF466FRV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF147QXV bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF505MRY 3968880 ENCODE Processing Pipeline a478f59a397c2cf367c8b1fe97c6a924 https://www.encodeproject.org/files/ENCFF147QXV/@@download/ENCFF147QXV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF762LDF bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 4135581 ENCODE Processing Pipeline 4fd1ec871d2c9fd0acf45b090d6098f8 https://www.encodeproject.org/files/ENCFF762LDF/@@download/ENCFF762LDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF483PBA bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF387KXA, ENCFF513QSD, ENCFF762JSN 7216453 ENCODE Processing Pipeline 783ba9e8905d5f1811ca6c753333774e https://www.encodeproject.org/files/ENCFF483PBA/@@download/ENCFF483PBA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF210LCR bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 5654839 ENCODE Processing Pipeline cece85227138bed4d2e487c576138f6d https://www.encodeproject.org/files/ENCFF210LCR/@@download/ENCFF210LCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF554XAI bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 4855004 ENCODE Processing Pipeline 98de65987c0e66bbad86c88c52ff043c https://www.encodeproject.org/files/ENCFF554XAI/@@download/ENCFF554XAI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF916KLD bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 5050350 ENCODE Processing Pipeline d8a3931ec7358fc3503f9890169714fb https://www.encodeproject.org/files/ENCFF916KLD/@@download/ENCFF916KLD.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF274DVQ bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 4527559 ENCODE Processing Pipeline 989e63de6058c49c3266aaa1f69937d1 https://www.encodeproject.org/files/ENCFF274DVQ/@@download/ENCFF274DVQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749YOZ bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF477KIN 5989415 ENCODE Processing Pipeline facb26d15d256bd2d8e262ea0ea238e3 https://www.encodeproject.org/files/ENCFF749YOZ/@@download/ENCFF749YOZ.bed.gz hg19 released borderline replicate concordance ENCFF012MDL bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF938VGO 6477226 ENCODE Processing Pipeline 222604a22520fa35b4c92da08510cae7 https://www.encodeproject.org/files/ENCFF012MDL/@@download/ENCFF012MDL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF134YYB bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 2 ENCFF165PBN, ENCFF431XOH, ENCFF705NOL 6755676 ENCODE Processing Pipeline c2af53b3337564bd3de5d32dc5379e4a https://www.encodeproject.org/files/ENCFF134YYB/@@download/ENCFF134YYB.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF270NHR bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF451IIX 6304161 ENCODE Processing Pipeline d90dd03b4ef3171f96100588a66cee89 https://www.encodeproject.org/files/ENCFF270NHR/@@download/ENCFF270NHR.bed.gz hg19 released low read depth ENCFF446PBM bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF591HDZ 5559349 ENCODE Processing Pipeline c76ac68d2be83fbcefd8f5efe66330cc https://www.encodeproject.org/files/ENCFF446PBM/@@download/ENCFF446PBM.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF231NZX bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF343LLI, ENCFF366BIR 7059985 ENCODE Processing Pipeline 8dc42d3bec717438edc8e74e56c392bf https://www.encodeproject.org/files/ENCFF231NZX/@@download/ENCFF231NZX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF443VIO bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF998OHX 6388236 ENCODE Processing Pipeline 57ac12aa8c4c3edda1bb6e446ff2c975 https://www.encodeproject.org/files/ENCFF443VIO/@@download/ENCFF443VIO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF407DGA bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF404RJD, ENCFF760DHW 6900090 ENCODE Processing Pipeline 9fa798e8e6d31e9ad67651403b3e07ef https://www.encodeproject.org/files/ENCFF407DGA/@@download/ENCFF407DGA.bed.gz hg19 released ENCFF558IHL bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF602LPS 5969653 ENCODE Processing Pipeline 0ddc6b72c715c94e47da2e2a409c383f https://www.encodeproject.org/files/ENCFF558IHL/@@download/ENCFF558IHL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF476ONF bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF343RSJ 7045249 ENCODE Processing Pipeline beabafaf330c948155b347c6c3ac2e50 https://www.encodeproject.org/files/ENCFF476ONF/@@download/ENCFF476ONF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF547ASW bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 2 ENCFF053WUE 6494730 ENCODE Processing Pipeline 02260bfb1ba8c4fd1ed7952451f3328d https://www.encodeproject.org/files/ENCFF547ASW/@@download/ENCFF547ASW.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF689XKH bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF929KZG 6741876 ENCODE Processing Pipeline 1503f8030056b359c7018fdb7ec6f49c https://www.encodeproject.org/files/ENCFF689XKH/@@download/ENCFF689XKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF558KUD bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF180OJS 6722636 ENCODE Processing Pipeline 6944651a6d59336cd5f21fa8f5f559bd https://www.encodeproject.org/files/ENCFF558KUD/@@download/ENCFF558KUD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF740DFA bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF049MPQ, ENCFF838ZQW 6221097 ENCODE Processing Pipeline a670810c359adfc69ab1acb6b56dbe77 https://www.encodeproject.org/files/ENCFF740DFA/@@download/ENCFF740DFA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF015RED bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 6222237 ENCODE Processing Pipeline 7ccc53751ec7dd1c471fe8c24e31311a https://www.encodeproject.org/files/ENCFF015RED/@@download/ENCFF015RED.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF637CIX bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 7177132 ENCODE Processing Pipeline b0429ae29455c952bff9b5a57d7585e6 https://www.encodeproject.org/files/ENCFF637CIX/@@download/ENCFF637CIX.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF453AYJ bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF329FLI 6315860 ENCODE Processing Pipeline e99e0c7ca8422a3b0a735556eac55707 https://www.encodeproject.org/files/ENCFF453AYJ/@@download/ENCFF453AYJ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF480YPV bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF818PEY 7038241 ENCODE Processing Pipeline de706cd1cdfa0a33ed26bb5236a6c92e https://www.encodeproject.org/files/ENCFF480YPV/@@download/ENCFF480YPV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF947TJN bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF182WHU, ENCFF332OVN 7005891 ENCODE Processing Pipeline 9c7ba6a7b72a87f37d11a6f3e597d365 https://www.encodeproject.org/files/ENCFF947TJN/@@download/ENCFF947TJN.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF943IGS bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF182WHU, ENCFF914AEL 7184230 ENCODE Processing Pipeline 9625c90bc58fbefa77cb06fe574eb025 https://www.encodeproject.org/files/ENCFF943IGS/@@download/ENCFF943IGS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF522TKF bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF485QJI, ENCFF677SXP 4919084 ENCODE Processing Pipeline 97ff9851e73b8907f9b194f29be041da https://www.encodeproject.org/files/ENCFF522TKF/@@download/ENCFF522TKF.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF802MWF bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 6807370 ENCODE Processing Pipeline b4209d28352bb320a3f5260cf60d74b3 https://www.encodeproject.org/files/ENCFF802MWF/@@download/ENCFF802MWF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF715GDR bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF339RIH, ENCFF529BVI, ENCFF772FBN 6422534 ENCODE Processing Pipeline 87c2f5b6dbe5f2b3879757ffb220fbf7 https://www.encodeproject.org/files/ENCFF715GDR/@@download/ENCFF715GDR.bed.gz hg19 released mild to moderate bottlenecking ENCFF283OGT bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP 6912537 ENCODE Processing Pipeline 4247ed24024f4c1a5c5128388126f2a1 https://www.encodeproject.org/files/ENCFF283OGT/@@download/ENCFF283OGT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF247RAX bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 7019787 ENCODE Processing Pipeline c551f013dad997bd272a6f5374d96e56 https://www.encodeproject.org/files/ENCFF247RAX/@@download/ENCFF247RAX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF971RUU bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF753SVR 6964237 ENCODE Processing Pipeline 843c3c9ee2b7352046c96ff409115ff1 https://www.encodeproject.org/files/ENCFF971RUU/@@download/ENCFF971RUU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF385LTD bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 7102147 ENCODE Processing Pipeline fd18be84207ef924b9342b60af421079 https://www.encodeproject.org/files/ENCFF385LTD/@@download/ENCFF385LTD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF348SEZ bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 2 ENCFF487QNN 6246497 ENCODE Processing Pipeline dc69abc4cb1c24d8da0514f69cfbf8ee https://www.encodeproject.org/files/ENCFF348SEZ/@@download/ENCFF348SEZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF959JZX bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5603245 ENCODE Processing Pipeline 19e02c2d6f1085dfc408eb2710934272 https://www.encodeproject.org/files/ENCFF959JZX/@@download/ENCFF959JZX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF619OWB bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5786788 ENCODE Processing Pipeline aa8a31c877313a6f0bdb97e87a00a5f8 https://www.encodeproject.org/files/ENCFF619OWB/@@download/ENCFF619OWB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF376IUM bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 6928265 ENCODE Processing Pipeline e5d4a150f21727fc54d1e0fc0c0ac2e9 https://www.encodeproject.org/files/ENCFF376IUM/@@download/ENCFF376IUM.bed.gz hg19 released ENCFF361MVW bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 7008093 ENCODE Processing Pipeline 99d5dedef33c69294237b20506127214 https://www.encodeproject.org/files/ENCFF361MVW/@@download/ENCFF361MVW.bed.gz hg19 archived ENCFF066XXM bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 5264643 ENCODE Processing Pipeline 2db813549d06712da009a2f5d76b306e https://www.encodeproject.org/files/ENCFF066XXM/@@download/ENCFF066XXM.bed.gz hg19 released low read length ENCFF781QFB bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 2 ENCFF181DZU, ENCFF817NEK 5404972 ENCODE Processing Pipeline cb00f9a2d73ea18c89d160bb300a8514 https://www.encodeproject.org/files/ENCFF781QFB/@@download/ENCFF781QFB.bed.gz hg19 archived low read length ENCFF686QQS bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF135DLX, ENCFF999EQI 6223707 ENCODE Processing Pipeline 8f075c19e6cb6fdfc26ea1a2932726d1 https://www.encodeproject.org/files/ENCFF686QQS/@@download/ENCFF686QQS.bed.gz hg19 released ENCFF103UAV bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 2 ENCFF629LJM 6518933 ENCODE Processing Pipeline 790138c12dd949b7a47ed3735edc7852 https://www.encodeproject.org/files/ENCFF103UAV/@@download/ENCFF103UAV.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF418EHB bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF707EHW 6464491 ENCODE Processing Pipeline b7e9f49e4efa0123691e1b5547bc0468 https://www.encodeproject.org/files/ENCFF418EHB/@@download/ENCFF418EHB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF731DSK bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF519ODA 6883135 ENCODE Processing Pipeline 2335b9aac0f3e7b94978f59c14e80b60 https://www.encodeproject.org/files/ENCFF731DSK/@@download/ENCFF731DSK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF491JFL bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF361MQC, ENCFF654EHF, ENCFF991UTU 6653476 ENCODE Processing Pipeline 8cae86c49ce3f5f045310de13afc7dee https://www.encodeproject.org/files/ENCFF491JFL/@@download/ENCFF491JFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF517GNM bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF554EXS, ENCFF654EHF, ENCFF991UTU 6782982 ENCODE Processing Pipeline 19b75432199988920527c7bf357bc5aa https://www.encodeproject.org/files/ENCFF517GNM/@@download/ENCFF517GNM.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF357OAA bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 5760292 ENCODE Processing Pipeline 57cd23fbb6807ef1926017cdddb8efac https://www.encodeproject.org/files/ENCFF357OAA/@@download/ENCFF357OAA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF705MDG bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 3785736 ENCODE Processing Pipeline 6905e36337bfbfc3113c08a7dce94ecd https://www.encodeproject.org/files/ENCFF705MDG/@@download/ENCFF705MDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF748IWA bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF224RMN 7008120 ENCODE Processing Pipeline c61eca35286c2a4ce66bb1cd12a50102 https://www.encodeproject.org/files/ENCFF748IWA/@@download/ENCFF748IWA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF902JQV bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF799DEL 6883464 ENCODE Processing Pipeline 33d39689d6ffdc189ce8cd64e48bb0a7 https://www.encodeproject.org/files/ENCFF902JQV/@@download/ENCFF902JQV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF458DFL bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU 6376793 ENCODE Processing Pipeline f94c47f74adfa13548a2c652b02b6dab https://www.encodeproject.org/files/ENCFF458DFL/@@download/ENCFF458DFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF003IXO bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF109PJP 7076238 ENCODE Processing Pipeline c32e816799131e5106bfd66405078f0e https://www.encodeproject.org/files/ENCFF003IXO/@@download/ENCFF003IXO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF351PGN bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF583FAG, ENCFF874XYT 6677591 ENCODE Processing Pipeline 544d520441bbeb7d2df6d5c9a665e174 https://www.encodeproject.org/files/ENCFF351PGN/@@download/ENCFF351PGN.bed.gz hg19 released ENCFF598AUH bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF573QVR 7129641 ENCODE Processing Pipeline 325ec239d352f4d4e132a813effc169e https://www.encodeproject.org/files/ENCFF598AUH/@@download/ENCFF598AUH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF794UGE bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF029BWR, ENCFF049MPQ 6302812 ENCODE Processing Pipeline 2eecbac37afa9869718ab7bf8dec9b34 https://www.encodeproject.org/files/ENCFF794UGE/@@download/ENCFF794UGE.bed.gz hg19 released ENCFF620FTP bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 2 ENCFF182WHU, ENCFF652ORT 6482861 ENCODE Processing Pipeline 2cbc937be56cc8aabee3d13b6932cdb1 https://www.encodeproject.org/files/ENCFF620FTP/@@download/ENCFF620FTP.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF791LFD bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF572OMD, ENCFF958KLM 6185676 ENCODE Processing Pipeline fb1c60fc8fddc0244414dfb53e2e77ef https://www.encodeproject.org/files/ENCFF791LFD/@@download/ENCFF791LFD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF599QYZ bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 2 ENCFF335RUN 6997011 ENCODE Processing Pipeline 12aa683628ee71a645b0e6cedab340fb https://www.encodeproject.org/files/ENCFF599QYZ/@@download/ENCFF599QYZ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF165LZH bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF607CWP 6500242 ENCODE Processing Pipeline 58509d36a506bd02d8ba2ffb88c98216 https://www.encodeproject.org/files/ENCFF165LZH/@@download/ENCFF165LZH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF914GVW bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6921612 ENCODE Processing Pipeline 8cfeba5ecb646957e24b36fb21b73f6b https://www.encodeproject.org/files/ENCFF914GVW/@@download/ENCFF914GVW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF893FDT bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6996985 ENCODE Processing Pipeline 923708270fe325cf05efb068175c9b1f https://www.encodeproject.org/files/ENCFF893FDT/@@download/ENCFF893FDT.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF624XKD bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF270HZT, ENCFF359TIO 6725905 ENCODE Processing Pipeline 3517b46ca96b254234976888869e2bfa https://www.encodeproject.org/files/ENCFF624XKD/@@download/ENCFF624XKD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF066EAT bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF013JXB, ENCFF958RTR 4364605 ENCODE Processing Pipeline f57fb1ee83f2c3375f280090ea2961a2 https://www.encodeproject.org/files/ENCFF066EAT/@@download/ENCFF066EAT.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF141TPZ bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF256BSJ 6328713 ENCODE Processing Pipeline 9be441f96818ed2d248c5cda0c55840c https://www.encodeproject.org/files/ENCFF141TPZ/@@download/ENCFF141TPZ.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF479KRR bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF366XGP, ENCFF650GFB 6012983 ENCODE Processing Pipeline cbcd47fed40f04880ccb0d8d69aff45b https://www.encodeproject.org/files/ENCFF479KRR/@@download/ENCFF479KRR.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF722KNP bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 2 ENCFF449TVZ 6600641 ENCODE Processing Pipeline 76499fa82b95097ddb0c937eb92d1d83 https://www.encodeproject.org/files/ENCFF722KNP/@@download/ENCFF722KNP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF492QYQ bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF604MCO 6858936 ENCODE Processing Pipeline 67a67e3cf2fb24398218ef6a74afe443 https://www.encodeproject.org/files/ENCFF492QYQ/@@download/ENCFF492QYQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF973PJK bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 6900096 ENCODE Processing Pipeline 5985a37d51c949670a0adea792b890bf https://www.encodeproject.org/files/ENCFF973PJK/@@download/ENCFF973PJK.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF125NRW bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492TFL 6990992 ENCODE Processing Pipeline 371e0ca64207e44d71940416a8b89106 https://www.encodeproject.org/files/ENCFF125NRW/@@download/ENCFF125NRW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF787YKD bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF133FDE 6503020 ENCODE Processing Pipeline e1082f258e5a0d4b44c9203ef3a07759 https://www.encodeproject.org/files/ENCFF787YKD/@@download/ENCFF787YKD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF299KLM bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF499NJO 6748654 ENCODE Processing Pipeline 86f36e7d43743d333492e185ae4e7a2a https://www.encodeproject.org/files/ENCFF299KLM/@@download/ENCFF299KLM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF281WOI bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 2 ENCFF060YYI, ENCFF182WHU 7201615 ENCODE Processing Pipeline 9d6de6f788a22a14a3482fff1d2afe43 https://www.encodeproject.org/files/ENCFF281WOI/@@download/ENCFF281WOI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF848FMM bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO 6997649 ENCODE Processing Pipeline 98c3da9f35a16790aaebe52c53b2c120 https://www.encodeproject.org/files/ENCFF848FMM/@@download/ENCFF848FMM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF040XUI bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD 6747781 ENCODE Processing Pipeline 7f0f219157010c15dacec296cb2c94b3 https://www.encodeproject.org/files/ENCFF040XUI/@@download/ENCFF040XUI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF169ZKI bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF541GVQ, ENCFF922JGL 5154718 ENCODE Processing Pipeline 6a4f993445e20144e700970ada0ca6d1 https://www.encodeproject.org/files/ENCFF169ZKI/@@download/ENCFF169ZKI.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF304SPP bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 2 ENCFF124AKH, ENCFF203ABR 6428572 ENCODE Processing Pipeline 1168510cdabab6a56ab45f3b1982502f https://www.encodeproject.org/files/ENCFF304SPP/@@download/ENCFF304SPP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF733RUB bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF681XFM 6837084 ENCODE Processing Pipeline 51693c057eaba4cd5fb3ec36ce764c31 https://www.encodeproject.org/files/ENCFF733RUB/@@download/ENCFF733RUB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF253SCW bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF588CRQ, ENCFF650GFB 44847 ENCODE Processing Pipeline 843ee65dfa4f255e2a5ff48b9607f3b8 https://www.encodeproject.org/files/ENCFF253SCW/@@download/ENCFF253SCW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF314VOK bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF645WBK, ENCFF807CUF 5215902 ENCODE Processing Pipeline ee39665b68439cbcca6045dff206b554 https://www.encodeproject.org/files/ENCFF314VOK/@@download/ENCFF314VOK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF073ACH bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF659YOC 3922214 ENCODE Processing Pipeline 2b9a98a9a0cbf2ae45dce3d7570c0950 https://www.encodeproject.org/files/ENCFF073ACH/@@download/ENCFF073ACH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF372FLW bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 4179024 ENCODE Processing Pipeline 4e94740b37fb8b99b7d324eb3fb75d00 https://www.encodeproject.org/files/ENCFF372FLW/@@download/ENCFF372FLW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF818TBG bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 2 ENCFF541NSS, ENCFF801GGG, ENCFF881DVS 7042299 ENCODE Processing Pipeline 196699a54fa97e51711ef70a40b63464 https://www.encodeproject.org/files/ENCFF818TBG/@@download/ENCFF818TBG.bed.gz hg19 released ENCFF054VAP bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 2 ENCFF801GGG, ENCFF806BMO, ENCFF881DVS 6617953 ENCODE Processing Pipeline 774498edce15d98f7fb120962d6f3ba1 https://www.encodeproject.org/files/ENCFF054VAP/@@download/ENCFF054VAP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF129CAN bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 2 ENCFF515NFA, ENCFF801GGG, ENCFF881DVS 6285149 ENCODE Processing Pipeline b05ff45241daab9061819ddfb0dc5a4f https://www.encodeproject.org/files/ENCFF129CAN/@@download/ENCFF129CAN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF236WSQ bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 6119134 ENCODE Processing Pipeline e972082cf7848136ad3c323f39055b78 https://www.encodeproject.org/files/ENCFF236WSQ/@@download/ENCFF236WSQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF649MCA bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF552ZAM, ENCFF969DYI 6570142 ENCODE Processing Pipeline f9e2d5a849ef987451e1e89cff10606c https://www.encodeproject.org/files/ENCFF649MCA/@@download/ENCFF649MCA.bed.gz hg19 released antibody characterized with exemption ENCFF079EBS bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 6826910 ENCODE Processing Pipeline c897f38b7bcc14db5ddfddd58e96799d https://www.encodeproject.org/files/ENCFF079EBS/@@download/ENCFF079EBS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001XQE bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 800970 John Stamatoyannopoulos, UW d3a793e194cd93b043a032662f5878b1 https://www.encodeproject.org/files/ENCFF001XQE/@@download/ENCFF001XQE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF883SBZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 4460441 ENCODE Processing Pipeline dc4d73cbe139008389921ec6d1eb8947 https://www.encodeproject.org/files/ENCFF883SBZ/@@download/ENCFF883SBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF435TGK bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF463MDN 6966635 ENCODE Processing Pipeline 0bf8d3fdd297d53839ce0fbe5316367a https://www.encodeproject.org/files/ENCFF435TGK/@@download/ENCFF435TGK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487XXM bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF037EJX, ENCFF502MJK 4523226 ENCODE Processing Pipeline 38acfad5c6be9b3c04af5cdaa4d262e7 https://www.encodeproject.org/files/ENCFF487XXM/@@download/ENCFF487XXM.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF788XKR bed narrowPeak peaks ENCSR191TLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PHF5A-human DNA False 2018-02-20 ENCODE 2 ENCFF203ABR, ENCFF753SCW 7073347 ENCODE Processing Pipeline 99aea6c9383d279944fe83762e4440a8 https://www.encodeproject.org/files/ENCFF788XKR/@@download/ENCFF788XKR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF702IHF bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 2 ENCFF508WWL, ENCFF801GGG, ENCFF881DVS 6086486 ENCODE Processing Pipeline 90d84b4ead3316d2ce196e7b3305d6f4 https://www.encodeproject.org/files/ENCFF702IHF/@@download/ENCFF702IHF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF827YDE bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG 6689916 ENCODE Processing Pipeline 9fe76792210b133665f8baba5162d01a https://www.encodeproject.org/files/ENCFF827YDE/@@download/ENCFF827YDE.bed.gz hg19 released borderline replicate concordance ENCFF705ZZH bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 2 ENCFF262QTI, ENCFF969DYI, ENCFF994YBV 6223511 ENCODE Processing Pipeline fc123f5bffe8fbbc2c9c80ad0bb2496f https://www.encodeproject.org/files/ENCFF705ZZH/@@download/ENCFF705ZZH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF608NEP bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF548BKE 4452905 ENCODE Processing Pipeline 8bd9d8817d8c4732aaaecb92aa78176b https://www.encodeproject.org/files/ENCFF608NEP/@@download/ENCFF608NEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF705JDO bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 3000827 ENCODE Processing Pipeline 7b3b2e82e8ac84f8073e7731a6a0bf29 https://www.encodeproject.org/files/ENCFF705JDO/@@download/ENCFF705JDO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF627NVL bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 6612322 ENCODE Processing Pipeline c94f36c4657842187a9a2e757738c0f2 https://www.encodeproject.org/files/ENCFF627NVL/@@download/ENCFF627NVL.bed.gz hg19 released antibody characterized with exemption ENCFF101OYM bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF426UGN 6659386 ENCODE Processing Pipeline 33a6e7410d7102f4213559892d77db7d https://www.encodeproject.org/files/ENCFF101OYM/@@download/ENCFF101OYM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF804LKJ bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 1207971 ENCODE Processing Pipeline ba9d4821757dea35896c8804bb35174c https://www.encodeproject.org/files/ENCFF804LKJ/@@download/ENCFF804LKJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF598TIP bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 2 ENCFF262VNS, ENCFF801GGG, ENCFF881DVS 6168949 ENCODE Processing Pipeline 886c705156324b9a638f98a93be8f70c https://www.encodeproject.org/files/ENCFF598TIP/@@download/ENCFF598TIP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF596YYO bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 6691760 ENCODE Processing Pipeline 21e99697f4e8c0277093c77dc32879dc https://www.encodeproject.org/files/ENCFF596YYO/@@download/ENCFF596YYO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF929FJI bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 5900193 ENCODE Processing Pipeline cfbcf03baa291b99beb93586aa3f37cd https://www.encodeproject.org/files/ENCFF929FJI/@@download/ENCFF929FJI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF833ZCJ bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF240UFD 6333248 ENCODE Processing Pipeline 4a72c6407220843cae6b75d867fcef59 https://www.encodeproject.org/files/ENCFF833ZCJ/@@download/ENCFF833ZCJ.bed.gz hg19 released ENCFF408TRC bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 4419284 ENCODE Processing Pipeline 5feca8703d12480c372660f58565d18a https://www.encodeproject.org/files/ENCFF408TRC/@@download/ENCFF408TRC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF046WGV bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 4561903 ENCODE Processing Pipeline ef41780b200cca0f8494cd0f0966947e https://www.encodeproject.org/files/ENCFF046WGV/@@download/ENCFF046WGV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF336UZW bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 4384689 ENCODE Processing Pipeline f9bf48178659d146a8e8aa48aae8e4c9 https://www.encodeproject.org/files/ENCFF336UZW/@@download/ENCFF336UZW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF371XXQ bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF535SPI, ENCFF864UEQ 4741604 ENCODE Processing Pipeline a8482b3e486619615fa68bf6cf9504ed https://www.encodeproject.org/files/ENCFF371XXQ/@@download/ENCFF371XXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF213KTM bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF613UOL, ENCFF864UEQ 6181362 ENCODE Processing Pipeline 4e38e53568c072d11b308794448f527e https://www.encodeproject.org/files/ENCFF213KTM/@@download/ENCFF213KTM.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF001XSI bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 739159 John Stamatoyannopoulos, UW 8e787dcbcdc51b6995672783275ae189 https://www.encodeproject.org/files/ENCFF001XSI/@@download/ENCFF001XSI.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF695UND bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 4061971 ENCODE Processing Pipeline ffd4adf0bdeb412ece0eb94210206d9e https://www.encodeproject.org/files/ENCFF695UND/@@download/ENCFF695UND.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF241JSX bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF599MVB, ENCFF934ZAX 4457180 ENCODE Processing Pipeline 30394c45d8ebe0da11c915fa8516c3cd https://www.encodeproject.org/files/ENCFF241JSX/@@download/ENCFF241JSX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRI bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOK 628952 John Stamatoyannopoulos, UW fc8449d17a3d6ee29ddeae78fd707736 https://www.encodeproject.org/files/ENCFF001XRI/@@download/ENCFF001XRI.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF777FSS bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 4461725 ENCODE Processing Pipeline b783794844073f2d6fd7f91e69bd81a2 https://www.encodeproject.org/files/ENCFF777FSS/@@download/ENCFF777FSS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF376SMA bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF541WKG 4536576 ENCODE Processing Pipeline 33699052c085da46547cf24d1246a236 https://www.encodeproject.org/files/ENCFF376SMA/@@download/ENCFF376SMA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF374LID bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF514GQU 5018599 ENCODE Processing Pipeline 16f6924aa2674726dc14313b2a69856d https://www.encodeproject.org/files/ENCFF374LID/@@download/ENCFF374LID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF475WRI bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF183MYT, ENCFF522HDC 6517388 ENCODE Processing Pipeline c4e7999b743103ac6a463192629ddcf9 https://www.encodeproject.org/files/ENCFF475WRI/@@download/ENCFF475WRI.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF552ZAY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 5439753 ENCODE Processing Pipeline cd17067a85d52f2050be5d06ce0f6a33 https://www.encodeproject.org/files/ENCFF552ZAY/@@download/ENCFF552ZAY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF254TMJ bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 2 ENCFF285NOA, ENCFF306XER 6085191 ENCODE Processing Pipeline 2094ae886ce87c6e14bc9cd5117889d4 https://www.encodeproject.org/files/ENCFF254TMJ/@@download/ENCFF254TMJ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF654AYS bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF426NNP 5190525 ENCODE Processing Pipeline 22b797f93b9ba6e5c6e378848d333642 https://www.encodeproject.org/files/ENCFF654AYS/@@download/ENCFF654AYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667ZFL bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF481XFG, ENCFF509ANO 1433441 ENCODE Processing Pipeline bcba2ec36ba11c4c1df173dd311fdc03 https://www.encodeproject.org/files/ENCFF667ZFL/@@download/ENCFF667ZFL.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF805KEB bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 6635169 ENCODE Processing Pipeline 45e1425a9acf2feddb601a4f89b81aae https://www.encodeproject.org/files/ENCFF805KEB/@@download/ENCFF805KEB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF457XPX bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF254KBN 6769825 ENCODE Processing Pipeline 4637ee3d180c920116d1cf40c67d71cf https://www.encodeproject.org/files/ENCFF457XPX/@@download/ENCFF457XPX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF586QMR bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF031AVI 6863395 ENCODE Processing Pipeline badf1b8ee9da9331466c9ff635727465 https://www.encodeproject.org/files/ENCFF586QMR/@@download/ENCFF586QMR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF716DUT bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF488TLJ 4179753 ENCODE Processing Pipeline fca7441aee74fefffdd6b17704e8539d https://www.encodeproject.org/files/ENCFF716DUT/@@download/ENCFF716DUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF573ZMO bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF466HUV, ENCFF650MOB 3850971 ENCODE Processing Pipeline 74c008bd757c6d578f4dcedfc1637ff4 https://www.encodeproject.org/files/ENCFF573ZMO/@@download/ENCFF573ZMO.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF310DOZ bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF669HLL 5924348 ENCODE Processing Pipeline 14b3f3d8ab5a0509cdc620d42c6ac978 https://www.encodeproject.org/files/ENCFF310DOZ/@@download/ENCFF310DOZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF306BBY bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 2985778 ENCODE Processing Pipeline c46c23e747f2bc9a1837549baa2c03be https://www.encodeproject.org/files/ENCFF306BBY/@@download/ENCFF306BBY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF249GYD bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 6794677 ENCODE Processing Pipeline 399ad20964e01340f9aea8e025cbfd10 https://www.encodeproject.org/files/ENCFF249GYD/@@download/ENCFF249GYD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF010JFS bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF174UCM, ENCFF279XQE 3817595 ENCODE Processing Pipeline d047b2eb22a8539fbf3fde04c865fb9b https://www.encodeproject.org/files/ENCFF010JFS/@@download/ENCFF010JFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF976XOX bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF513LAW, ENCFF768AST 5924813 ENCODE Processing Pipeline f22dcb61a0016c56b736f22c2f872fa0 https://www.encodeproject.org/files/ENCFF976XOX/@@download/ENCFF976XOX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF270GEP bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF275QSN, ENCFF509LLL 6502238 ENCODE Processing Pipeline 1b0d77e557090a061c18c37c34f975a4 https://www.encodeproject.org/files/ENCFF270GEP/@@download/ENCFF270GEP.bed.gz hg19 released missing genetic modification characterization ENCFF017TYA bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF875UQI 6781599 ENCODE Processing Pipeline 407ee578b0bb09c7021d00bb1deb39b3 https://www.encodeproject.org/files/ENCFF017TYA/@@download/ENCFF017TYA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF113YPN bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 4140241 ENCODE Processing Pipeline 0a19fc910c0bb468dd11d35c927acbc9 https://www.encodeproject.org/files/ENCFF113YPN/@@download/ENCFF113YPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF596TET bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF396RJB 6295954 ENCODE Processing Pipeline 17a9a506e9347c08ecc8fe3b3577430f https://www.encodeproject.org/files/ENCFF596TET/@@download/ENCFF596TET.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF591LRS bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF591BQK, ENCFF818ZLY 6659552 ENCODE Processing Pipeline 8c8c2d8412f808ae8d170201a02edb5d https://www.encodeproject.org/files/ENCFF591LRS/@@download/ENCFF591LRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF623RZZ bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF742LFF 4254752 ENCODE Processing Pipeline 092ea79f244ee5ddb6ced344bbeed5d4 https://www.encodeproject.org/files/ENCFF623RZZ/@@download/ENCFF623RZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF316CBZ bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF846YRS 6638863 ENCODE Processing Pipeline 4fda371d435d62c0cdf47ff9e8d52c73 https://www.encodeproject.org/files/ENCFF316CBZ/@@download/ENCFF316CBZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPU bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 597292 John Stamatoyannopoulos, UW 154cd03f8564b69afd2fab7b0e276f47 https://www.encodeproject.org/files/ENCFF001XPU/@@download/ENCFF001XPU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF892VYV bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 4129203 ENCODE Processing Pipeline 02dc4390a46ee6a4603e44c91ca1a5b8 https://www.encodeproject.org/files/ENCFF892VYV/@@download/ENCFF892VYV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF041YJV bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 4305604 ENCODE Processing Pipeline 2371b94b7137fd7a56b567acc2631c85 https://www.encodeproject.org/files/ENCFF041YJV/@@download/ENCFF041YJV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF370RBU bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF134HTY 6668633 ENCODE Processing Pipeline 508447dc5f2ece5fee0b0816bac0d5c7 https://www.encodeproject.org/files/ENCFF370RBU/@@download/ENCFF370RBU.bed.gz hg19 released low read depth ENCFF541RTC bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF620XKU 7097716 ENCODE Processing Pipeline e6c25db4b623fa7b1eff41e9a7ac6536 https://www.encodeproject.org/files/ENCFF541RTC/@@download/ENCFF541RTC.bed.gz hg19 released ENCFF835YPT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 5309313 ENCODE Processing Pipeline 414de378a66450e2030c2242e0d93478 https://www.encodeproject.org/files/ENCFF835YPT/@@download/ENCFF835YPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF613VCR bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 5316251 ENCODE Processing Pipeline 633f1f5876b47332344eb8962527dba3 https://www.encodeproject.org/files/ENCFF613VCR/@@download/ENCFF613VCR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF118OEM bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF115WLQ 6930776 ENCODE Processing Pipeline 7ebe12154b71d7b0c29387f0c8cd6fa8 https://www.encodeproject.org/files/ENCFF118OEM/@@download/ENCFF118OEM.bed.gz hg19 released mild to moderate bottlenecking ENCFF698OHI bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF244KNV 4780880 ENCODE Processing Pipeline 1c474626f3dbae0db69c999f058e939f https://www.encodeproject.org/files/ENCFF698OHI/@@download/ENCFF698OHI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF251GTF bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF793JQM 4431043 ENCODE Processing Pipeline e3de3a2947ccf509e7c2778d2a69d2b3 https://www.encodeproject.org/files/ENCFF251GTF/@@download/ENCFF251GTF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF973NBX bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 3997830 ENCODE Processing Pipeline 03cc4cb6dd5e79225c390245c59eeb18 https://www.encodeproject.org/files/ENCFF973NBX/@@download/ENCFF973NBX.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF980AUY bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 4272041 ENCODE Processing Pipeline b08b9732fcd3e20e5a40be4fd0ac8b01 https://www.encodeproject.org/files/ENCFF980AUY/@@download/ENCFF980AUY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF682QML bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF353IXR, ENCFF472OOV 5488677 ENCODE Processing Pipeline 717ad779934529bd287c92f81fe4c406 https://www.encodeproject.org/files/ENCFF682QML/@@download/ENCFF682QML.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF433RNR bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ 6188871 ENCODE Processing Pipeline 4f349162fa27939dac8a7fc617b685f9 https://www.encodeproject.org/files/ENCFF433RNR/@@download/ENCFF433RNR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF926XFR bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF972AYH 2979768 ENCODE Processing Pipeline fa285962e1b274aac8605f7db6eeabb4 https://www.encodeproject.org/files/ENCFF926XFR/@@download/ENCFF926XFR.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF580OVF bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF544MAP 6894292 ENCODE Processing Pipeline 552f2bab6068ab3d0513b6720c1669de https://www.encodeproject.org/files/ENCFF580OVF/@@download/ENCFF580OVF.bed.gz hg19 released ENCFF731UAI bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF856ODM 4929718 ENCODE Processing Pipeline c139685c51c08d40e6c3ea5c3a76aa7a https://www.encodeproject.org/files/ENCFF731UAI/@@download/ENCFF731UAI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF361GVH bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 2 ENCFF135ZFA, ENCFF203ABR 6238421 ENCODE Processing Pipeline 916ea4a04b1324c43a07b931cde791ef https://www.encodeproject.org/files/ENCFF361GVH/@@download/ENCFF361GVH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF186XBP bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF214RUL, ENCFF508HCX 6878540 ENCODE Processing Pipeline b0f0c9c1d715adb6e51447102a105876 https://www.encodeproject.org/files/ENCFF186XBP/@@download/ENCFF186XBP.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF456TVJ bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF176QWX 6474005 ENCODE Processing Pipeline 1f7564f1c77b5179d1ac9819aa4c5224 https://www.encodeproject.org/files/ENCFF456TVJ/@@download/ENCFF456TVJ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF497YWO bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF038LCM, ENCFF191DFR, ENCFF601AUG 5439096 ENCODE Processing Pipeline a6f6f6bccba3d8c632d1487bb6dfd303 https://www.encodeproject.org/files/ENCFF497YWO/@@download/ENCFF497YWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPE bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 748948 John Stamatoyannopoulos, UW f1a2ff887e4b39e4ce138baf528eb617 https://www.encodeproject.org/files/ENCFF001XPE/@@download/ENCFF001XPE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF961AGO bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 3061731 ENCODE Processing Pipeline 1286158fe09ccb9c0f1f96eb46c1328a https://www.encodeproject.org/files/ENCFF961AGO/@@download/ENCFF961AGO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF491NVT bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 3572166 ENCODE Processing Pipeline d1a1faae16d72d91b8f0943e4b26cd96 https://www.encodeproject.org/files/ENCFF491NVT/@@download/ENCFF491NVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF932GYE bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 2 ENCFF328GEU, ENCFF447KVS, ENCFF823USR 7047664 ENCODE Processing Pipeline 8c7259e0d52f3cd48e614d6c15fe1ee1 https://www.encodeproject.org/files/ENCFF932GYE/@@download/ENCFF932GYE.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF015WVN bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF062WDT, ENCFF840LUZ, ENCFF903ATW 6433501 ENCODE Processing Pipeline 79fc95fda12d15573ae2289cdf4d9dbf https://www.encodeproject.org/files/ENCFF015WVN/@@download/ENCFF015WVN.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF381PAX bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697CIN 6106558 ENCODE Processing Pipeline 2cf7ff7e4acbf1baa005d9e485d38bcd https://www.encodeproject.org/files/ENCFF381PAX/@@download/ENCFF381PAX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF599SPU bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 5291266 ENCODE Processing Pipeline cb06ef30f1d113827a464623c4fefc29 https://www.encodeproject.org/files/ENCFF599SPU/@@download/ENCFF599SPU.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF252RWC bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 4449893 ENCODE Processing Pipeline e6409899363ddd545604df6c4df87440 https://www.encodeproject.org/files/ENCFF252RWC/@@download/ENCFF252RWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF556COW bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF488IBU, ENCFF864UEQ 6206995 ENCODE Processing Pipeline c72a2419addc25c2b95728a215891382 https://www.encodeproject.org/files/ENCFF556COW/@@download/ENCFF556COW.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF561ICJ bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF697DRW 6858502 ENCODE Processing Pipeline d3e949555df36dc36966d1ddb939371d https://www.encodeproject.org/files/ENCFF561ICJ/@@download/ENCFF561ICJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF655RQF bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF415RJB 4751401 ENCODE Processing Pipeline 3998549b09b59c038386bb2da2c79f54 https://www.encodeproject.org/files/ENCFF655RQF/@@download/ENCFF655RQF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF977RZR bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF855QOS 7094454 ENCODE Processing Pipeline 68435eded05bd8b19828ee8e842ff060 https://www.encodeproject.org/files/ENCFF977RZR/@@download/ENCFF977RZR.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF912FKQ bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF159NGH, ENCFF864UEQ 6262075 ENCODE Processing Pipeline 95169f0673261acf640639a0818357cb https://www.encodeproject.org/files/ENCFF912FKQ/@@download/ENCFF912FKQ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF621APS bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF515SHZ, ENCFF864UEQ 6607489 ENCODE Processing Pipeline 6f520fce44fd1e0abc7a68dc3026de6c https://www.encodeproject.org/files/ENCFF621APS/@@download/ENCFF621APS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF219ASD bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF987HMV 1312157 ENCODE Processing Pipeline ba4142a08406d6848b8a81ea3f408093 https://www.encodeproject.org/files/ENCFF219ASD/@@download/ENCFF219ASD.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF081YAN bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 2161600 ENCODE Processing Pipeline 2ff4a5f8741d7d3809aec33b42266ba6 https://www.encodeproject.org/files/ENCFF081YAN/@@download/ENCFF081YAN.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF895CZK bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122FZS, ENCFF277EKP, ENCFF902HRT 4181922 ENCODE Processing Pipeline ad7f0547a5ed89ad349a14a94217883e https://www.encodeproject.org/files/ENCFF895CZK/@@download/ENCFF895CZK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF605IMH bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF540RWT, ENCFF879AJU 4607785 ENCODE Processing Pipeline 1344f2b1b6e3a6c9ab3165215b3a5777 https://www.encodeproject.org/files/ENCFF605IMH/@@download/ENCFF605IMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF327TVJ bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 4525639 ENCODE Processing Pipeline 74e9a09fbfe54eeeb20ac00a4e971cb3 https://www.encodeproject.org/files/ENCFF327TVJ/@@download/ENCFF327TVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF672PNA bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585DEP 4917223 ENCODE Processing Pipeline 7654776b88aab9314ce3f5aba831b791 https://www.encodeproject.org/files/ENCFF672PNA/@@download/ENCFF672PNA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354WUJ bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 4280947 ENCODE Processing Pipeline d8616dc3b56920001156e632fefd5187 https://www.encodeproject.org/files/ENCFF354WUJ/@@download/ENCFF354WUJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF653UJT bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF045NWB, ENCFF522HDC 6103983 ENCODE Processing Pipeline 7384bf8990c218b47cac769d4470c370 https://www.encodeproject.org/files/ENCFF653UJT/@@download/ENCFF653UJT.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF998HJZ bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF785LYN 5176576 ENCODE Processing Pipeline a2d99ba2a87a699516c2a539ff405c66 https://www.encodeproject.org/files/ENCFF998HJZ/@@download/ENCFF998HJZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF324CAS bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 4508322 ENCODE Processing Pipeline ddf087dc114613cea7315d513568c461 https://www.encodeproject.org/files/ENCFF324CAS/@@download/ENCFF324CAS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF505EIB bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 4219487 ENCODE Processing Pipeline de5e49bbd51ef4840243072ad43be632 https://www.encodeproject.org/files/ENCFF505EIB/@@download/ENCFF505EIB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700LQD bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF792OIY 5200460 ENCODE Processing Pipeline 79c1c36e79ee772a25be1d5be862c523 https://www.encodeproject.org/files/ENCFF700LQD/@@download/ENCFF700LQD.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF022KXM bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 3498445 ENCODE Processing Pipeline 4b1b0e06c290e3bfc70d0f2098bcde1d https://www.encodeproject.org/files/ENCFF022KXM/@@download/ENCFF022KXM.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF352QMZ bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF299WJB, ENCFF545DZO 4478096 ENCODE Processing Pipeline 74d91e5d18cd136d4493185a7010994f https://www.encodeproject.org/files/ENCFF352QMZ/@@download/ENCFF352QMZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF436OWU bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 4403785 ENCODE Processing Pipeline a895db5e73e2acf0e8b09774027faccb https://www.encodeproject.org/files/ENCFF436OWU/@@download/ENCFF436OWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF791JVM bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF445HFT 5003262 ENCODE Processing Pipeline 9a625b4583baf5c6496dae9bd382d937 https://www.encodeproject.org/files/ENCFF791JVM/@@download/ENCFF791JVM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF003WYE bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 1121347 ENCODE Processing Pipeline 0075b41ce937ac2948c49cd47fa765f0 https://www.encodeproject.org/files/ENCFF003WYE/@@download/ENCFF003WYE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF854CCF bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 6238769 ENCODE Processing Pipeline 31834bde4e421dc304e7711837e58986 https://www.encodeproject.org/files/ENCFF854CCF/@@download/ENCFF854CCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF178ANU bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 4771447 ENCODE Processing Pipeline c491087f20ab9c04bfa876874b59502c https://www.encodeproject.org/files/ENCFF178ANU/@@download/ENCFF178ANU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430QIK bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 4342082 ENCODE Processing Pipeline 0e2141abcbdb75330819f35685b60e9f https://www.encodeproject.org/files/ENCFF430QIK/@@download/ENCFF430QIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF675QKT bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 2 ENCFF764AHB 6724590 ENCODE Processing Pipeline a5ac54afb16c8de00867a78f84c6df2b https://www.encodeproject.org/files/ENCFF675QKT/@@download/ENCFF675QKT.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF932UHC bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207UON, ENCFF710NTS 7095210 ENCODE Processing Pipeline df87abde436c4eb20e311cfa808f3398 https://www.encodeproject.org/files/ENCFF932UHC/@@download/ENCFF932UHC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364ZNH bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF532FFM 6055180 ENCODE Processing Pipeline ce2481f4145bcc55f98f59538fd69b39 https://www.encodeproject.org/files/ENCFF364ZNH/@@download/ENCFF364ZNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF780CML bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 3514368 ENCODE Processing Pipeline 3cd259133842ffbef6039da97281c1c6 https://www.encodeproject.org/files/ENCFF780CML/@@download/ENCFF780CML.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF912AHN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 4867217 ENCODE Processing Pipeline 9166549a0bef72476e102ad417f38e98 https://www.encodeproject.org/files/ENCFF912AHN/@@download/ENCFF912AHN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF720DVS bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5822760 ENCODE Processing Pipeline a211c953b14fb046093aa85149bb2475 https://www.encodeproject.org/files/ENCFF720DVS/@@download/ENCFF720DVS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF003GUP bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF513YON 5236960 ENCODE Processing Pipeline 3479a76d6597c1dd5332a56411676510 https://www.encodeproject.org/files/ENCFF003GUP/@@download/ENCFF003GUP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF341DDR bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF470HDG, ENCFF602XLT 5781698 ENCODE Processing Pipeline c7a62f66f629504ab98163e2610b1032 https://www.encodeproject.org/files/ENCFF341DDR/@@download/ENCFF341DDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF372ATJ bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF698QEQ, ENCFF960JYT 3668176 ENCODE Processing Pipeline 496295e76a9b26bbb35963b6f863572e https://www.encodeproject.org/files/ENCFF372ATJ/@@download/ENCFF372ATJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF247ZEK bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 2 ENCFF051LWI, ENCFF585HLM 7215524 ENCODE Processing Pipeline 568aa4401b01bb57d232d82928afe0d4 https://www.encodeproject.org/files/ENCFF247ZEK/@@download/ENCFF247ZEK.bed.gz hg19 released ENCFF858SYW bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF778YDK 6557419 ENCODE Processing Pipeline 029d2e306bb7105473f65d2e1499a70e https://www.encodeproject.org/files/ENCFF858SYW/@@download/ENCFF858SYW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF913KLO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 4952514 ENCODE Processing Pipeline b06fec22d524fcd17581a927c4a190ca https://www.encodeproject.org/files/ENCFF913KLO/@@download/ENCFF913KLO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203YKR bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF205KMO, ENCFF709NTI 2689037 ENCODE Processing Pipeline 5fffe610aa44186236fc8d6eecd9581a https://www.encodeproject.org/files/ENCFF203YKR/@@download/ENCFF203YKR.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF423EOR bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 3484431 ENCODE Processing Pipeline 7f0774c94b185ffe04909390f2470dbf https://www.encodeproject.org/files/ENCFF423EOR/@@download/ENCFF423EOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427RBA bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 1343735 ENCODE Processing Pipeline 1bd02cf16715bd189abc6a24d0859a05 https://www.encodeproject.org/files/ENCFF427RBA/@@download/ENCFF427RBA.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF001XSA bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 720827 John Stamatoyannopoulos, UW 4f3ab5ae1b6b2c1fecb823ebb5292428 https://www.encodeproject.org/files/ENCFF001XSA/@@download/ENCFF001XSA.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF129FBO bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 4341715 ENCODE Processing Pipeline e0e094e56cd99e7dd5ecfd67f77b2ffd https://www.encodeproject.org/files/ENCFF129FBO/@@download/ENCFF129FBO.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF414JVR bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT 4384725 ENCODE Processing Pipeline 18fe1deb7a669f58ae85617cf18aa232 https://www.encodeproject.org/files/ENCFF414JVR/@@download/ENCFF414JVR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF637UCH bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF909PBK 4129954 ENCODE Processing Pipeline 57d7a5c17ad4e34839c687283c055542 https://www.encodeproject.org/files/ENCFF637UCH/@@download/ENCFF637UCH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF754FCZ bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF362KQB 3596762 ENCODE Processing Pipeline 9508e5a11ebc957a6811d300eb0de39f https://www.encodeproject.org/files/ENCFF754FCZ/@@download/ENCFF754FCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF799MMA bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 2 ENCFF092VSU, ENCFF513ZBH, ENCFF777FIV 5877259 ENCODE Processing Pipeline dcb1d7b6ba2f33da62248a26ecb5f149 https://www.encodeproject.org/files/ENCFF799MMA/@@download/ENCFF799MMA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF814SES bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 2 ENCFF181PST, ENCFF602FUW 6403721 ENCODE Processing Pipeline adcbd23aff63735c0557f15b852f6b3c https://www.encodeproject.org/files/ENCFF814SES/@@download/ENCFF814SES.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF307XCC bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 3128817 ENCODE Processing Pipeline 68dd84671ebfd6108b3d782fffa3f26b https://www.encodeproject.org/files/ENCFF307XCC/@@download/ENCFF307XCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF063ECO bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 3547313 ENCODE Processing Pipeline c74221405b0d14a76020741da11f2479 https://www.encodeproject.org/files/ENCFF063ECO/@@download/ENCFF063ECO.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF378GKG bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 6546881 ENCODE Processing Pipeline f62beb40d570ace6d8f3c26e2bfaa89a https://www.encodeproject.org/files/ENCFF378GKG/@@download/ENCFF378GKG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF819FYL bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF479DQX, ENCFF502MJK 5278296 ENCODE Processing Pipeline e2fd27250b0ef4cbbb716dc934cd3858 https://www.encodeproject.org/files/ENCFF819FYL/@@download/ENCFF819FYL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF287ZJM bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF384OAK 5518419 ENCODE Processing Pipeline 1b3202e768c3b13ce0e69e55fa167b41 https://www.encodeproject.org/files/ENCFF287ZJM/@@download/ENCFF287ZJM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF290ZCZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF020BND, ENCFF021FUK 5501934 ENCODE Processing Pipeline 718d5d96ee866e35d369284b0441b07e https://www.encodeproject.org/files/ENCFF290ZCZ/@@download/ENCFF290ZCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF961BTT bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113EJS, ENCFF599MVB 3931940 ENCODE Processing Pipeline 5d522ae4533452d1ed414a2fe30cb6d0 https://www.encodeproject.org/files/ENCFF961BTT/@@download/ENCFF961BTT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF846OWC bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF613XRK 4757605 ENCODE Processing Pipeline ed6a140c69c05c75efb8ca7fcab3a261 https://www.encodeproject.org/files/ENCFF846OWC/@@download/ENCFF846OWC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF084XPA bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089LSW, ENCFF356DXM 4801634 ENCODE Processing Pipeline 4922ff395d00f92548c39d35d3cce488 https://www.encodeproject.org/files/ENCFF084XPA/@@download/ENCFF084XPA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF173DKW bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 4426090 ENCODE Processing Pipeline 2378c3ce38deeb7f33867522ea39af65 https://www.encodeproject.org/files/ENCFF173DKW/@@download/ENCFF173DKW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF848YTC bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF244QRT 6564830 ENCODE Processing Pipeline 9a3e968041c1b1c1d3e083e7e0033939 https://www.encodeproject.org/files/ENCFF848YTC/@@download/ENCFF848YTC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF312KOJ bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF183DZU, ENCFF958RTR 4771390 ENCODE Processing Pipeline e67d39616e6c69a48e8ff1925f3aca82 https://www.encodeproject.org/files/ENCFF312KOJ/@@download/ENCFF312KOJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF001XMI bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 845639 John Stamatoyannopoulos, UW 9d613fc37537831c5d4a421627d5acea https://www.encodeproject.org/files/ENCFF001XMI/@@download/ENCFF001XMI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF934ZVZ bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 4346550 ENCODE Processing Pipeline 04397c841d1f7771cf3c71015a08840e https://www.encodeproject.org/files/ENCFF934ZVZ/@@download/ENCFF934ZVZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF333UMD bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF512CKS, ENCFF864ASU 6362058 ENCODE Processing Pipeline 282a4378128a43c6e1b884bdb02b42e3 https://www.encodeproject.org/files/ENCFF333UMD/@@download/ENCFF333UMD.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF966VOH bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585QSQ 4265470 ENCODE Processing Pipeline e94e9ea4c5ead089d95cb4e220ffb26e https://www.encodeproject.org/files/ENCFF966VOH/@@download/ENCFF966VOH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF570KPZ bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 2 ENCFF728PFP 6830604 ENCODE Processing Pipeline 6d6fe42ebf5a49bb3d74e0ac7002246e https://www.encodeproject.org/files/ENCFF570KPZ/@@download/ENCFF570KPZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF330XDW bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 4789023 ENCODE Processing Pipeline dc036f29a85e560071e4222c704640c3 https://www.encodeproject.org/files/ENCFF330XDW/@@download/ENCFF330XDW.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF337RTD bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 4049903 ENCODE Processing Pipeline 34a201468fe2cc830b77ab03cb4dab1e https://www.encodeproject.org/files/ENCFF337RTD/@@download/ENCFF337RTD.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF348XCJ bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF254PCL, ENCFF425JYG 4374404 ENCODE Processing Pipeline 028dfc7d3c179772454c32926f7257ea https://www.encodeproject.org/files/ENCFF348XCJ/@@download/ENCFF348XCJ.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF199FFU bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 2 ENCFF708TFQ, ENCFF756TTX 5036581 ENCODE Processing Pipeline 9497167b31a81466464cc0458197e940 https://www.encodeproject.org/files/ENCFF199FFU/@@download/ENCFF199FFU.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF660FMW bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 2 ENCFF672KKI 5735076 ENCODE Processing Pipeline c897344b93a3457b06e62854ea50d490 https://www.encodeproject.org/files/ENCFF660FMW/@@download/ENCFF660FMW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF622AQP bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF909FDN 6276248 ENCODE Processing Pipeline 23c579e00ef205d77a62570bbee24232 https://www.encodeproject.org/files/ENCFF622AQP/@@download/ENCFF622AQP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF114SKT bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF987ZHK 4964017 ENCODE Processing Pipeline 14e30d209048f8c2a2b76dbea75f6a35 https://www.encodeproject.org/files/ENCFF114SKT/@@download/ENCFF114SKT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF027ZKP bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 3990972 ENCODE Processing Pipeline 9fc4e54229d238b968ec7f8905b0b566 https://www.encodeproject.org/files/ENCFF027ZKP/@@download/ENCFF027ZKP.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF814FEG bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141XQF, ENCFF356DXM 4950981 ENCODE Processing Pipeline 12b39634b32096304bc95edd7e8d61cc https://www.encodeproject.org/files/ENCFF814FEG/@@download/ENCFF814FEG.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF670DLM bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF987SJL 6389708 ENCODE Processing Pipeline 72b8ad68ef98cdec0a11f280ae041ddc https://www.encodeproject.org/files/ENCFF670DLM/@@download/ENCFF670DLM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF878TRQ bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 2 ENCFF472AKN, ENCFF572JRO 5963655 ENCODE Processing Pipeline 9d8706b5041da11aef4b0eed9722590d https://www.encodeproject.org/files/ENCFF878TRQ/@@download/ENCFF878TRQ.bed.gz hg19 released missing genetic modification characterization ENCFF369YHE bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 2 ENCFF180DLN, ENCFF311MHB 5606389 ENCODE Processing Pipeline d8cddbe81473e58340ce677c25e38cc5 https://www.encodeproject.org/files/ENCFF369YHE/@@download/ENCFF369YHE.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF872MXG bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF096MNC, ENCFF108EFL 2783118 ENCODE Processing Pipeline daf430579c8509a224986a7ce42ca662 https://www.encodeproject.org/files/ENCFF872MXG/@@download/ENCFF872MXG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF477NKZ bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF374UFJ 5557576 ENCODE Processing Pipeline bffafc095efd7e2bcf6c9fb193ef26b4 https://www.encodeproject.org/files/ENCFF477NKZ/@@download/ENCFF477NKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF570CST bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF352NJI 3984799 ENCODE Processing Pipeline 69bb711c8f182fb057f23125c2984743 https://www.encodeproject.org/files/ENCFF570CST/@@download/ENCFF570CST.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF755NTM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 4992247 ENCODE Processing Pipeline 50117195db5af85c352e3c74b5c52af5 https://www.encodeproject.org/files/ENCFF755NTM/@@download/ENCFF755NTM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614RPL bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 4859422 ENCODE Processing Pipeline c2be15b33254bff97f9bbe443bdf3db2 https://www.encodeproject.org/files/ENCFF614RPL/@@download/ENCFF614RPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041POZ bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 2532916 ENCODE Processing Pipeline adf8683858265f42f5494538a255772b https://www.encodeproject.org/files/ENCFF041POZ/@@download/ENCFF041POZ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF090MIJ bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 2 ENCFF194ZKK, ENCFF926NTQ 6779574 ENCODE Processing Pipeline 76f18f74c6f5c1d498ea8e93cac8bd80 https://www.encodeproject.org/files/ENCFF090MIJ/@@download/ENCFF090MIJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF367HPL bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 5543746 ENCODE Processing Pipeline f1705fbca0567dced7c801e7385cff4e https://www.encodeproject.org/files/ENCFF367HPL/@@download/ENCFF367HPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF304VXR bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 5449410 ENCODE Processing Pipeline 7960ea0f8df0aa0ce24f114984592100 https://www.encodeproject.org/files/ENCFF304VXR/@@download/ENCFF304VXR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF192EEU bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF862SGN 4186356 ENCODE Processing Pipeline b1919c076f93736833441511b15a8c55 https://www.encodeproject.org/files/ENCFF192EEU/@@download/ENCFF192EEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF252ZSU bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 3940300 ENCODE Processing Pipeline b4629a0f7ba60e27d60aa449fb412dbf https://www.encodeproject.org/files/ENCFF252ZSU/@@download/ENCFF252ZSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF737SVI bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF630CIO 6985024 ENCODE Processing Pipeline 4173e70969c9a3c2cbc0edd37faa1bd3 https://www.encodeproject.org/files/ENCFF737SVI/@@download/ENCFF737SVI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF235LAV bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343RXC, ENCFF356DXM 4421970 ENCODE Processing Pipeline cdf743e9c35656e9ef860b647ccac743 https://www.encodeproject.org/files/ENCFF235LAV/@@download/ENCFF235LAV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF680TFE bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF222SPO, ENCFF650GFB 35461 ENCODE Processing Pipeline 467e98fe012f764f3105973c6d6244b0 https://www.encodeproject.org/files/ENCFF680TFE/@@download/ENCFF680TFE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF063HEH bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 3839966 ENCODE Processing Pipeline ffad26b8cc4cbfb3dcaa7882c1958b37 https://www.encodeproject.org/files/ENCFF063HEH/@@download/ENCFF063HEH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF787CXT bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 3443460 ENCODE Processing Pipeline 0cf91c4f6235aa79d074109821553f4e https://www.encodeproject.org/files/ENCFF787CXT/@@download/ENCFF787CXT.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF056GMV bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF093JMK, ENCFF498SAC 4385525 ENCODE Processing Pipeline 9a624a810a31b4f45f9bb4359ddf1fc8 https://www.encodeproject.org/files/ENCFF056GMV/@@download/ENCFF056GMV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF281QDR bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF428FLU 5627741 ENCODE Processing Pipeline 6e21c822da38e7b264a767b034f30d3a https://www.encodeproject.org/files/ENCFF281QDR/@@download/ENCFF281QDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF660LCY bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF495TVZ 5776906 ENCODE Processing Pipeline 9613132234e18a13ba2472b1490ad3dc https://www.encodeproject.org/files/ENCFF660LCY/@@download/ENCFF660LCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF839IXS bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 2 ENCFF266VDG, ENCFF508ZDE 6931086 ENCODE Processing Pipeline 8fe562fb6aaa19115d0302efb4fe971e https://www.encodeproject.org/files/ENCFF839IXS/@@download/ENCFF839IXS.bed.gz hg19 released missing genetic modification characterization ENCFF730GTB bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF338MLT, ENCFF599MVB 4919522 ENCODE Processing Pipeline d96c7fbafbba39aed2bcba1c4d7bf41a https://www.encodeproject.org/files/ENCFF730GTB/@@download/ENCFF730GTB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732QKX bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 4458460 ENCODE Processing Pipeline 7ecea1a5ecb46e2e36d17349a13d2f11 https://www.encodeproject.org/files/ENCFF732QKX/@@download/ENCFF732QKX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001XUA bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 713584 John Stamatoyannopoulos, UW d3b4032778c0d2aae425952ac89ed139 https://www.encodeproject.org/files/ENCFF001XUA/@@download/ENCFF001XUA.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF837XNW bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 4094993 ENCODE Processing Pipeline 6fd0e2c1d8d4cdeef8c15beacf5af599 https://www.encodeproject.org/files/ENCFF837XNW/@@download/ENCFF837XNW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF500IOB bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF381JSU 4137847 ENCODE Processing Pipeline 9fe0a156a59581ab25f0d64e83dd3461 https://www.encodeproject.org/files/ENCFF500IOB/@@download/ENCFF500IOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF069PPO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 2 ENCFF124STW, ENCFF400FDW 6175393 ENCODE Processing Pipeline 6641e81b3eae2a5e024312e55a53bba0 https://www.encodeproject.org/files/ENCFF069PPO/@@download/ENCFF069PPO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF607FHS bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 6332816 ENCODE Processing Pipeline eb8dba5e0c5c90d342f6ffcbf32ae0c0 https://www.encodeproject.org/files/ENCFF607FHS/@@download/ENCFF607FHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF312BLK bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF340SPV, ENCFF599MVB 4312437 ENCODE Processing Pipeline 4d688f33f41e2069d1e3663e4acc70ed https://www.encodeproject.org/files/ENCFF312BLK/@@download/ENCFF312BLK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279KYF bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 7001273 ENCODE Processing Pipeline cd2c87ab7d899cbebf90812117c66479 https://www.encodeproject.org/files/ENCFF279KYF/@@download/ENCFF279KYF.bed.gz hg19 released ENCFF001XMU bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 692623 John Stamatoyannopoulos, UW baaf1db2fcd53395f86ae116ecc0d17b https://www.encodeproject.org/files/ENCFF001XMU/@@download/ENCFF001XMU.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF777VSN bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 2672218 ENCODE Processing Pipeline 27fe350d5804c3efdc4c6767efabe4b2 https://www.encodeproject.org/files/ENCFF777VSN/@@download/ENCFF777VSN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF596IAY bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6443781 ENCODE Processing Pipeline 095302b6744b84ea2547f4ca832e1167 https://www.encodeproject.org/files/ENCFF596IAY/@@download/ENCFF596IAY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF339XVK bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI 5903649 ENCODE Processing Pipeline bb7c37656966b23123b9790192b394b4 https://www.encodeproject.org/files/ENCFF339XVK/@@download/ENCFF339XVK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF091TOR bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 4520836 ENCODE Processing Pipeline 5e14d520c61c7a53b23765785084f5de https://www.encodeproject.org/files/ENCFF091TOR/@@download/ENCFF091TOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF712NLB bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 2 ENCFF086MCV, ENCFF243MTV, ENCFF727XHW 6800166 ENCODE Processing Pipeline 70988bbb9db02fb9077af0e48bc10bfe https://www.encodeproject.org/files/ENCFF712NLB/@@download/ENCFF712NLB.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF230JPS bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF235NOS, ENCFF599MVB 4703593 ENCODE Processing Pipeline 11ca3dcdbd9fbedd66e09c3e64bf9a60 https://www.encodeproject.org/files/ENCFF230JPS/@@download/ENCFF230JPS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF295KFV bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF666BDF 6937560 ENCODE Processing Pipeline b92d3204db03532d0f6a6daf12d76ac8 https://www.encodeproject.org/files/ENCFF295KFV/@@download/ENCFF295KFV.bed.gz hg19 released ENCFF047LZG bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF174RPU, ENCFF296BML, ENCFF512WDI 6243882 ENCODE Processing Pipeline e0c1c56a7d7c53a842ea590b40ebff66 https://www.encodeproject.org/files/ENCFF047LZG/@@download/ENCFF047LZG.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XMM bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 775525 John Stamatoyannopoulos, UW 2b0104a1d500acf85ebd1165d5d33d8d https://www.encodeproject.org/files/ENCFF001XMM/@@download/ENCFF001XMM.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF241LIY bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 4309365 ENCODE Processing Pipeline 2e3c84a3715912d9ca749147da1895bd https://www.encodeproject.org/files/ENCFF241LIY/@@download/ENCFF241LIY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF450PVT bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117FPW, ENCFF356DXM 4093263 ENCODE Processing Pipeline 070b4b558160195a7d0f3ab27ce29f9d https://www.encodeproject.org/files/ENCFF450PVT/@@download/ENCFF450PVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF538LJI bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318TVO, ENCFF498SAC 5450249 ENCODE Processing Pipeline 644f9f0d26d1a0e6f7b8a2e09282df2b https://www.encodeproject.org/files/ENCFF538LJI/@@download/ENCFF538LJI.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF574TBH bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG 5604883 ENCODE Processing Pipeline d0787580587d9830e42b85456e5e8210 https://www.encodeproject.org/files/ENCFF574TBH/@@download/ENCFF574TBH.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF234PNC bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 4079736 ENCODE Processing Pipeline e0b33802feebc9eead970443f79cf85f https://www.encodeproject.org/files/ENCFF234PNC/@@download/ENCFF234PNC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF261HIN bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF090TEI, ENCFF346RZT 6908599 ENCODE Processing Pipeline a8297f85febf96ca4b0c377d90d16167 https://www.encodeproject.org/files/ENCFF261HIN/@@download/ENCFF261HIN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF001XPI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 544011 John Stamatoyannopoulos, UW 8ff0ac43097610e612420463de007152 https://www.encodeproject.org/files/ENCFF001XPI/@@download/ENCFF001XPI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF046FAZ bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 2503847 ENCODE Processing Pipeline fa4e3d0f2e1435f5c31e8e90d090f8c6 https://www.encodeproject.org/files/ENCFF046FAZ/@@download/ENCFF046FAZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF793WOV bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 4359463 ENCODE Processing Pipeline 59cf874f4e38d5ca45ad163d6c632bda https://www.encodeproject.org/files/ENCFF793WOV/@@download/ENCFF793WOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF318HRX bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF752FZP 4637578 ENCODE Processing Pipeline ccc246bc6aff2f88324d1564a514cd48 https://www.encodeproject.org/files/ENCFF318HRX/@@download/ENCFF318HRX.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF873BHU bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 4832031 ENCODE Processing Pipeline 61a2fd11b3639d9c0df47240e44f5e6c https://www.encodeproject.org/files/ENCFF873BHU/@@download/ENCFF873BHU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF001XSU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 601656 John Stamatoyannopoulos, UW ac9eb0f49655b416b767f25be87d0f8b https://www.encodeproject.org/files/ENCFF001XSU/@@download/ENCFF001XSU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF457WBU bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 3582199 ENCODE Processing Pipeline 7192241e9e8b555f465ce209223b0a77 https://www.encodeproject.org/files/ENCFF457WBU/@@download/ENCFF457WBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF850ZXW bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF194PQZ, ENCFF346RZT 5658800 ENCODE Processing Pipeline 2864840f71c2e82e706788efcd3da734 https://www.encodeproject.org/files/ENCFF850ZXW/@@download/ENCFF850ZXW.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF847XRL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 2486166 ENCODE Processing Pipeline 33a6656245faca919822bdb778bb5af9 https://www.encodeproject.org/files/ENCFF847XRL/@@download/ENCFF847XRL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF915PWP bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK 6100374 ENCODE Processing Pipeline f668df82c5013c3dc11ee7147f514f74 https://www.encodeproject.org/files/ENCFF915PWP/@@download/ENCFF915PWP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF429WXC bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 3915798 ENCODE Processing Pipeline f6653f3d0a01e5ae0da9a2c116519085 https://www.encodeproject.org/files/ENCFF429WXC/@@download/ENCFF429WXC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF128GGA bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 3703960 ENCODE Processing Pipeline b202a9dadaea6440fee22d78cd1f676e https://www.encodeproject.org/files/ENCFF128GGA/@@download/ENCFF128GGA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF794ILD bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 5690456 ENCODE Processing Pipeline b7a1d833bed610efdfaecd2e6c6ae8f6 https://www.encodeproject.org/files/ENCFF794ILD/@@download/ENCFF794ILD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XQY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 851723 John Stamatoyannopoulos, UW 01250d7daafd7557c591fb9991464bb5 https://www.encodeproject.org/files/ENCFF001XQY/@@download/ENCFF001XQY.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF242KOJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 2425519 ENCODE Processing Pipeline 8245ad26b6b0b5b41a58e3cefc7efe07 https://www.encodeproject.org/files/ENCFF242KOJ/@@download/ENCFF242KOJ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF058SVD bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF319HSK, ENCFF382BNF 4656074 ENCODE Processing Pipeline 47a4ac6d52ba1dfc37fe3d79f2b185bd https://www.encodeproject.org/files/ENCFF058SVD/@@download/ENCFF058SVD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF859MQB bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 5152875 ENCODE Processing Pipeline 71baec99e51af3ddd25dbb5560627e68 https://www.encodeproject.org/files/ENCFF859MQB/@@download/ENCFF859MQB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001XNJ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 713329 John Stamatoyannopoulos, UW 32960c49d1ed141e6c54f15414942bb9 https://www.encodeproject.org/files/ENCFF001XNJ/@@download/ENCFF001XNJ.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF756RGK bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 3069932 ENCODE Processing Pipeline 8e407e153852c3c8fea8751f0e4158c4 https://www.encodeproject.org/files/ENCFF756RGK/@@download/ENCFF756RGK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF832BPN bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 4241624 ENCODE Processing Pipeline f3455cfebc308f6dc6b360696db47636 https://www.encodeproject.org/files/ENCFF832BPN/@@download/ENCFF832BPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF657LPF bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF321CYT, ENCFF813JWE 6083473 ENCODE Processing Pipeline bce63864da546534586631a4ae6e039a https://www.encodeproject.org/files/ENCFF657LPF/@@download/ENCFF657LPF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF359DUK bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF355LJR 4845278 ENCODE Processing Pipeline d5d4b94701097a50c57b885794f761d8 https://www.encodeproject.org/files/ENCFF359DUK/@@download/ENCFF359DUK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416FNH bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF157CZE 5140414 ENCODE Processing Pipeline ebc91754346f4bf8ceb120368730384b https://www.encodeproject.org/files/ENCFF416FNH/@@download/ENCFF416FNH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF543ACC bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF100SSC, ENCFF807JYY 6172983 ENCODE Processing Pipeline 91071736128c67014e0b60d87495eee3 https://www.encodeproject.org/files/ENCFF543ACC/@@download/ENCFF543ACC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF467HMZ bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF002HVX, ENCFF690QBI 3965013 ENCODE Processing Pipeline 1362840114d5fb2d23a67ba4b732b554 https://www.encodeproject.org/files/ENCFF467HMZ/@@download/ENCFF467HMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF025FXN bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF274MHJ, ENCFF760DHW 6928011 ENCODE Processing Pipeline cd1a93e3903f5c2580ee2aed69176ac5 https://www.encodeproject.org/files/ENCFF025FXN/@@download/ENCFF025FXN.bed.gz hg19 released ENCFF776GTW bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 4553274 ENCODE Processing Pipeline 5169acff0ca163969d36b2a38025f5ab https://www.encodeproject.org/files/ENCFF776GTW/@@download/ENCFF776GTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF806NEN bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 6261010 ENCODE Processing Pipeline b12b3a898aaae73f6bae267d89c05c62 https://www.encodeproject.org/files/ENCFF806NEN/@@download/ENCFF806NEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF127UZX bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF900YNG, ENCFF998GMZ 2639252 ENCODE Processing Pipeline 5a179ea069533493ab67c3846b2f16e4 https://www.encodeproject.org/files/ENCFF127UZX/@@download/ENCFF127UZX.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF272GTS bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF100SSC, ENCFF113OAS 6140974 ENCODE Processing Pipeline 9724f3ac29624a7591f874827718ddca https://www.encodeproject.org/files/ENCFF272GTS/@@download/ENCFF272GTS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF001XRW bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 866798 John Stamatoyannopoulos, UW 09854fb94d70441e5f5e75934253be16 https://www.encodeproject.org/files/ENCFF001XRW/@@download/ENCFF001XRW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF470ARY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 4543454 ENCODE Processing Pipeline 02892451904ce256dde4a1e8c00bea2b https://www.encodeproject.org/files/ENCFF470ARY/@@download/ENCFF470ARY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF343XMY bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB 3664593 ENCODE Processing Pipeline 5803a50288c019371d7c79257bfd792a https://www.encodeproject.org/files/ENCFF343XMY/@@download/ENCFF343XMY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF561VAE bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF349ECU 4241707 ENCODE Processing Pipeline 7b0a5fea5ae5cbc51a424bd71e8b45f2 https://www.encodeproject.org/files/ENCFF561VAE/@@download/ENCFF561VAE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF439SZI bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 4815522 ENCODE Processing Pipeline 10145ccca4d460e694c04cd4cb50c12e https://www.encodeproject.org/files/ENCFF439SZI/@@download/ENCFF439SZI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XNP bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 710634 John Stamatoyannopoulos, UW d4750ee3f7d12f52db88190563f13230 https://www.encodeproject.org/files/ENCFF001XNP/@@download/ENCFF001XNP.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF109JHW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 2147125 ENCODE Processing Pipeline a1d48b4c1e08a2527a94ea40dabc8d88 https://www.encodeproject.org/files/ENCFF109JHW/@@download/ENCFF109JHW.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF049XKA bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 2854269 ENCODE Processing Pipeline adfd22125195df800a1212c8a381ec51 https://www.encodeproject.org/files/ENCFF049XKA/@@download/ENCFF049XKA.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF602AWU bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF270JJL, ENCFF502MJK 5689753 ENCODE Processing Pipeline de51d37cb980935a5ec20fb143c081cc https://www.encodeproject.org/files/ENCFF602AWU/@@download/ENCFF602AWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF942MUF bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 3449310 ENCODE Processing Pipeline c6502e4f08098ed2b9766c2dfff6b5c2 https://www.encodeproject.org/files/ENCFF942MUF/@@download/ENCFF942MUF.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF045UZK bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF628WKV, ENCFF814FCQ 3064246 ENCODE Processing Pipeline 29af1a0d0101ff71fd4acf3f4c5d783f https://www.encodeproject.org/files/ENCFF045UZK/@@download/ENCFF045UZK.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF386WPS bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF498ADD, ENCFF864UEQ 6274603 ENCODE Processing Pipeline 125cbc61b3d0171b55b890cc01723ad7 https://www.encodeproject.org/files/ENCFF386WPS/@@download/ENCFF386WPS.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF416ZYS bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF044SVI, ENCFF502MJK 6027013 ENCODE Processing Pipeline 40fa19d4d5d6e2a5a60a5a1e9d3cbb34 https://www.encodeproject.org/files/ENCFF416ZYS/@@download/ENCFF416ZYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF986CUM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 4368560 ENCODE Processing Pipeline 24ebbcac2df7f45c270d780b00ed9e59 https://www.encodeproject.org/files/ENCFF986CUM/@@download/ENCFF986CUM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF398EYK bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF992CYL 5017089 ENCODE Processing Pipeline 20de1c2c3d31c1351fb6eec9411926c4 https://www.encodeproject.org/files/ENCFF398EYK/@@download/ENCFF398EYK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF545EHA bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 4817312 ENCODE Processing Pipeline f537e875ce6fc4c5e3a7015a07e63207 https://www.encodeproject.org/files/ENCFF545EHA/@@download/ENCFF545EHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF016LSH bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF251HGY 5711721 ENCODE Processing Pipeline 8682495f78f9233d8126f6dc031fc4e4 https://www.encodeproject.org/files/ENCFF016LSH/@@download/ENCFF016LSH.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF741YYS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF406DSV, ENCFF449NNE, ENCFF999EQI 6571487 ENCODE Processing Pipeline bc51d18284ca90cbb8fed1c2d29ee50a https://www.encodeproject.org/files/ENCFF741YYS/@@download/ENCFF741YYS.bed.gz hg19 released antibody characterized with exemption ENCFF100FXA bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 4035379 ENCODE Processing Pipeline c3ae106011943b7122e307a0f977bc5b https://www.encodeproject.org/files/ENCFF100FXA/@@download/ENCFF100FXA.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF361PJU bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 2 ENCFF023YMB, ENCFF272HDX 6155141 ENCODE Processing Pipeline 1ca260b3cf83a5a8f400fcef7aed5994 https://www.encodeproject.org/files/ENCFF361PJU/@@download/ENCFF361PJU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF991EAY bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF495EUE 5328256 ENCODE Processing Pipeline 2ee5953aa6de0791f490b2026f3bd9bf https://www.encodeproject.org/files/ENCFF991EAY/@@download/ENCFF991EAY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF624ZMB bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF564MCX 4089103 ENCODE Processing Pipeline ea82d4eed548e69a4de334be39dbb6d8 https://www.encodeproject.org/files/ENCFF624ZMB/@@download/ENCFF624ZMB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF276JRH bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF864UEQ, ENCFF866ZRH 6141571 ENCODE Processing Pipeline d88e865ceb5df9636fa3bb8dfb312a3b https://www.encodeproject.org/files/ENCFF276JRH/@@download/ENCFF276JRH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF441YTV bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 2 ENCFF242UOG, ENCFF951SEJ 7188623 ENCODE Processing Pipeline 6ad9d97abd0b21bcd3a5d072ebdef340 https://www.encodeproject.org/files/ENCFF441YTV/@@download/ENCFF441YTV.bed.gz hg19 released missing genetic modification characterization ENCFF781ICW bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 3787582 ENCODE Processing Pipeline 21e96d4e43780edaff60b2cfd03428ee https://www.encodeproject.org/files/ENCFF781ICW/@@download/ENCFF781ICW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF906INE bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 5656449 ENCODE Processing Pipeline ccae6eee137a6eca43b13cf031ab40ef https://www.encodeproject.org/files/ENCFF906INE/@@download/ENCFF906INE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF914ZYY bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117OSG, ENCFF356DXM 2191945 ENCODE Processing Pipeline a2b7a8d8d086152f2616316ce5182a41 https://www.encodeproject.org/files/ENCFF914ZYY/@@download/ENCFF914ZYY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF694VSV bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF 5134148 ENCODE Processing Pipeline 5d843acff237a4ed39f9e362e90560ab https://www.encodeproject.org/files/ENCFF694VSV/@@download/ENCFF694VSV.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF668SRV bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF784AUK 5328556 ENCODE Processing Pipeline 22cb5e7ce3fb5be08497bc1699eeb5bc https://www.encodeproject.org/files/ENCFF668SRV/@@download/ENCFF668SRV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF837CQV bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 2577171 ENCODE Processing Pipeline 22d2b8db8c9b6fb4ede4fec6f30d96fd https://www.encodeproject.org/files/ENCFF837CQV/@@download/ENCFF837CQV.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371DUN bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF871NUZ, ENCFF888UFX 6564913 ENCODE Processing Pipeline 6ca81dba4fd491968e30149457f0af5f https://www.encodeproject.org/files/ENCFF371DUN/@@download/ENCFF371DUN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF444LYN bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF237CLM, ENCFF998TMC 4401824 ENCODE Processing Pipeline b2a6cdd23e21ed9fac80af72438d8161 https://www.encodeproject.org/files/ENCFF444LYN/@@download/ENCFF444LYN.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF001XNC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 820524 John Stamatoyannopoulos, UW e4f67fbb8502d9d6a14a8d9035605c42 https://www.encodeproject.org/files/ENCFF001XNC/@@download/ENCFF001XNC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF830SNU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 3974507 ENCODE Processing Pipeline 11f636264bfc02c3ed2b9491977cee63 https://www.encodeproject.org/files/ENCFF830SNU/@@download/ENCFF830SNU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF842BMF bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF659DTG, ENCFF864UEQ 6682281 ENCODE Processing Pipeline 3c5b424ef087cfc8a72d97312edcfd29 https://www.encodeproject.org/files/ENCFF842BMF/@@download/ENCFF842BMF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF774TTQ bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF837IWA 6443551 ENCODE Processing Pipeline 6dbbee2f20fbdb1a359bca7554d57b83 https://www.encodeproject.org/files/ENCFF774TTQ/@@download/ENCFF774TTQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF512BFW bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 6540785 ENCODE Processing Pipeline 7a7510bbc9d003ee483eea0ec474d440 https://www.encodeproject.org/files/ENCFF512BFW/@@download/ENCFF512BFW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF180NNF bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 1061408 ENCODE Processing Pipeline 5c9072fe36bd7389f2865e50f52d2cf5 https://www.encodeproject.org/files/ENCFF180NNF/@@download/ENCFF180NNF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF788BDL bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF595XJJ, ENCFF871NUZ 5644585 ENCODE Processing Pipeline 3336128abb2681da891b929d37244e79 https://www.encodeproject.org/files/ENCFF788BDL/@@download/ENCFF788BDL.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF502JYT bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 3645251 ENCODE Processing Pipeline 9595fd26369e5f64ce4bce97ca41d979 https://www.encodeproject.org/files/ENCFF502JYT/@@download/ENCFF502JYT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF847KJV bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF704SGZ, ENCFF880DIZ 4166481 ENCODE Processing Pipeline 37c9960d1e9a499802d5acda354727c2 https://www.encodeproject.org/files/ENCFF847KJV/@@download/ENCFF847KJV.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF259GGN bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 5985541 ENCODE Processing Pipeline 7c06ada8c4afcca9a87c7d40ad8e052e https://www.encodeproject.org/files/ENCFF259GGN/@@download/ENCFF259GGN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF225XDH bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF679HGX, ENCFF991UTU 5589494 ENCODE Processing Pipeline 76ffd2dbee137855d63fc7369ff33c6c https://www.encodeproject.org/files/ENCFF225XDH/@@download/ENCFF225XDH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF449PNR bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509UIP, ENCFF599MVB 4398599 ENCODE Processing Pipeline 0fa25558b252e59dedb6b6c2d0c0b540 https://www.encodeproject.org/files/ENCFF449PNR/@@download/ENCFF449PNR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF289FQM bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 4637535 ENCODE Processing Pipeline adf6c66b00665025515bad11517e18ef https://www.encodeproject.org/files/ENCFF289FQM/@@download/ENCFF289FQM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF395ZTW bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF678LJA, ENCFF864UEQ 6719388 ENCODE Processing Pipeline 6df4ca160476c7e68c96fafea8f491de https://www.encodeproject.org/files/ENCFF395ZTW/@@download/ENCFF395ZTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XQM bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 632186 John Stamatoyannopoulos, UW 2d732a8daebf71f3cd527787a2327939 https://www.encodeproject.org/files/ENCFF001XQM/@@download/ENCFF001XQM.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF655DUF bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 4031483 ENCODE Processing Pipeline 30d8f79a3f78539e4dad8986a315e5c9 https://www.encodeproject.org/files/ENCFF655DUF/@@download/ENCFF655DUF.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF588CWW bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF813EGR 4475853 ENCODE Processing Pipeline 11c95e53f2c6842553d23a69793e3f64 https://www.encodeproject.org/files/ENCFF588CWW/@@download/ENCFF588CWW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF308DEQ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF871ASR 5107914 ENCODE Processing Pipeline 49a9703abf533e94633ee660cd406419 https://www.encodeproject.org/files/ENCFF308DEQ/@@download/ENCFF308DEQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF539QIT bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF224HMM, ENCFF991UTU 5006850 ENCODE Processing Pipeline 3000419cc1a9289e4a24a47454b3aee7 https://www.encodeproject.org/files/ENCFF539QIT/@@download/ENCFF539QIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF734EMB bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 4570713 ENCODE Processing Pipeline dcf37d805f0491b7b886ff1113be27a8 https://www.encodeproject.org/files/ENCFF734EMB/@@download/ENCFF734EMB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421BMH bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154TCG, ENCFF698QEQ 404157 ENCODE Processing Pipeline 33f6c9179f9fb50d7635019a86d20749 https://www.encodeproject.org/files/ENCFF421BMH/@@download/ENCFF421BMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF070AMD bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF204HNK, ENCFF331ARQ 4885849 ENCODE Processing Pipeline b60020d752c55ab932b317dfae0c5108 https://www.encodeproject.org/files/ENCFF070AMD/@@download/ENCFF070AMD.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001XME bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 767870 John Stamatoyannopoulos, UW 54073de26393c7591464492858d7fbba https://www.encodeproject.org/files/ENCFF001XME/@@download/ENCFF001XME.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF949AFF bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 4359042 ENCODE Processing Pipeline 6f86a2b9f5b2b6e1f8f5b2500677e505 https://www.encodeproject.org/files/ENCFF949AFF/@@download/ENCFF949AFF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF405QLV bed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF878IXK 6293830 ENCODE Processing Pipeline e10d332e424943b4d415dabef7a2ae74 https://www.encodeproject.org/files/ENCFF405QLV/@@download/ENCFF405QLV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF621JGB bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 2 ENCFF774NMX, ENCFF800DAY 7098197 ENCODE Processing Pipeline 1ba4b01a7a46ffd49b60d3c82a7a8f57 https://www.encodeproject.org/files/ENCFF621JGB/@@download/ENCFF621JGB.bed.gz hg19 released missing genetic modification characterization ENCFF457IQL bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 4816631 ENCODE Processing Pipeline 16d273b1b7fe5772fdaed5104b46427a https://www.encodeproject.org/files/ENCFF457IQL/@@download/ENCFF457IQL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375JMY bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 3550767 ENCODE Processing Pipeline 35c0d89b30c713f3d58bc4a0379b79fd https://www.encodeproject.org/files/ENCFF375JMY/@@download/ENCFF375JMY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF868UJU bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 3887829 ENCODE Processing Pipeline 17baab5ed4f7c773f191519d3e6f609b https://www.encodeproject.org/files/ENCFF868UJU/@@download/ENCFF868UJU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387XCG bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299WPU, ENCFF346RZT 4836239 ENCODE Processing Pipeline 39c5f3ab0bde123d63d31b60f0c13e36 https://www.encodeproject.org/files/ENCFF387XCG/@@download/ENCFF387XCG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF159YRA bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF697QYW 4464087 ENCODE Processing Pipeline 4ecc8bf46ac16b07181bedc3bb3760de https://www.encodeproject.org/files/ENCFF159YRA/@@download/ENCFF159YRA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF126LPK bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 16440 ENCODE Processing Pipeline 463c61ace235cf292207aef54c3928c2 https://www.encodeproject.org/files/ENCFF126LPK/@@download/ENCFF126LPK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF996PWC bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF243MTV, ENCFF286IKC, ENCFF727XHW 7174160 ENCODE Processing Pipeline ab944eefc3d7a4b3d42132b44304dd84 https://www.encodeproject.org/files/ENCFF996PWC/@@download/ENCFF996PWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF080SVL bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF037DLB, ENCFF599MVB 5189979 ENCODE Processing Pipeline 076f2ec7359b5e403e5bc6d534780373 https://www.encodeproject.org/files/ENCFF080SVL/@@download/ENCFF080SVL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF679VQP bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV 5433003 ENCODE Processing Pipeline abb6c315b415a8830ef75ed1309c7a41 https://www.encodeproject.org/files/ENCFF679VQP/@@download/ENCFF679VQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001XUE bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 455440 John Stamatoyannopoulos, UW a60c161e74780cafa7169540c23ee93d https://www.encodeproject.org/files/ENCFF001XUE/@@download/ENCFF001XUE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF381HQF bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 4002859 ENCODE Processing Pipeline bcd5a89d0a3d1dd94e8e36f75c21292c https://www.encodeproject.org/files/ENCFF381HQF/@@download/ENCFF381HQF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF490WRP bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 2645766 ENCODE Processing Pipeline b4c91a9f9340d89c0975816c7cdab774 https://www.encodeproject.org/files/ENCFF490WRP/@@download/ENCFF490WRP.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF148FBK bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 5143978 ENCODE Processing Pipeline dcb2ca543a2f81c300abae00838438a4 https://www.encodeproject.org/files/ENCFF148FBK/@@download/ENCFF148FBK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF499YNQ bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF697SEU 5504698 ENCODE Processing Pipeline a86ca4eb9dd06ecdef514e8e573cbf89 https://www.encodeproject.org/files/ENCFF499YNQ/@@download/ENCFF499YNQ.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF147JUY bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF040WTG, ENCFF835ZVB 3868060 ENCODE Processing Pipeline 54a50f80f711bd91ab8690cbd5fa0e2c https://www.encodeproject.org/files/ENCFF147JUY/@@download/ENCFF147JUY.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF686BCT bed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF638QOI 3736105 ENCODE Processing Pipeline db3d8e882754797b05f67bf1ef499923 https://www.encodeproject.org/files/ENCFF686BCT/@@download/ENCFF686BCT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF278XFP bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF583QFG 5443236 ENCODE Processing Pipeline 5cc4ac63006cbb2586c6108c05a5b363 https://www.encodeproject.org/files/ENCFF278XFP/@@download/ENCFF278XFP.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF763KGX bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF548KMY, ENCFF602XLT 6552837 ENCODE Processing Pipeline 484acec17cb7b2e4decd4a12450e4a58 https://www.encodeproject.org/files/ENCFF763KGX/@@download/ENCFF763KGX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF401VYC bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF997OPU 5607888 ENCODE Processing Pipeline eaa1674d9f3913d9ac45c3bc0d9f5f41 https://www.encodeproject.org/files/ENCFF401VYC/@@download/ENCFF401VYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF527FXX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 4532432 ENCODE Processing Pipeline 9d65dee2b43c968f92488a2be9b805a7 https://www.encodeproject.org/files/ENCFF527FXX/@@download/ENCFF527FXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF284VQZ bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RJE, ENCFF599MVB 5992856 ENCODE Processing Pipeline ad55d0339ba95c498fe05cab0514bc6f https://www.encodeproject.org/files/ENCFF284VQZ/@@download/ENCFF284VQZ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF587UQZ bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF742DJF 5822355 ENCODE Processing Pipeline 7263de0e9d883c1ed6658b47c888d56a https://www.encodeproject.org/files/ENCFF587UQZ/@@download/ENCFF587UQZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF169DCU bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 5219355 ENCODE Processing Pipeline f8f9e17f6114336d07e507400998d026 https://www.encodeproject.org/files/ENCFF169DCU/@@download/ENCFF169DCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF775ACP bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF902HRT 2560643 ENCODE Processing Pipeline 4534548ee90e4e26f846c551de748a1b https://www.encodeproject.org/files/ENCFF775ACP/@@download/ENCFF775ACP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF868HHE bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF410CQF 4456330 ENCODE Processing Pipeline c9be9f83053fcb095365c34844348642 https://www.encodeproject.org/files/ENCFF868HHE/@@download/ENCFF868HHE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF598OWM bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF030JIY, ENCFF382BNF 3937689 ENCODE Processing Pipeline 39eb24fb2ec92133b5b20f3428aa7fac https://www.encodeproject.org/files/ENCFF598OWM/@@download/ENCFF598OWM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF154RFF bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF522NKK, ENCFF880DIZ 6253602 ENCODE Processing Pipeline bb6744858026875ff2562421bb32a47b https://www.encodeproject.org/files/ENCFF154RFF/@@download/ENCFF154RFF.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF650YKB bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 3690353 ENCODE Processing Pipeline d43b5690540dd71c1b9f817ded4a79c2 https://www.encodeproject.org/files/ENCFF650YKB/@@download/ENCFF650YKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF023FAR bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 2 ENCFF461OLA, ENCFF581ZJL 6198170 ENCODE Processing Pipeline 5c9f75fe0e7e582caaf556099b29c7c9 https://www.encodeproject.org/files/ENCFF023FAR/@@download/ENCFF023FAR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF453YFD bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 4232997 ENCODE Processing Pipeline 7c4c672f1c0f3c9cf4efaf1e1b85c80b https://www.encodeproject.org/files/ENCFF453YFD/@@download/ENCFF453YFD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF058DJL bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 6863158 ENCODE Processing Pipeline ee81955a8585a9d1a942965e8afb2823 https://www.encodeproject.org/files/ENCFF058DJL/@@download/ENCFF058DJL.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF797EKN bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 3236176 ENCODE Processing Pipeline 07b93e0a5afac38587f86032ead1a9d2 https://www.encodeproject.org/files/ENCFF797EKN/@@download/ENCFF797EKN.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF392HAM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF092KAW, ENCFF599MVB 4281939 ENCODE Processing Pipeline 4b4ad69bceb5dea6af4133c068fdecb3 https://www.encodeproject.org/files/ENCFF392HAM/@@download/ENCFF392HAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306KIF bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF874IUN 5125642 ENCODE Processing Pipeline 30b012c668d7bc406b0392591d3a148f https://www.encodeproject.org/files/ENCFF306KIF/@@download/ENCFF306KIF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF122PLB bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 3763406 ENCODE Processing Pipeline 746f3e5bb9e3b409bd26d24ef85bf3fd https://www.encodeproject.org/files/ENCFF122PLB/@@download/ENCFF122PLB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF045XQS bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 5688990 ENCODE Processing Pipeline fd1959e570e921880dd6b871081b0054 https://www.encodeproject.org/files/ENCFF045XQS/@@download/ENCFF045XQS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF413GIF bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 5883774 ENCODE Processing Pipeline 9c5b278573a71d45d07c399a054649bb https://www.encodeproject.org/files/ENCFF413GIF/@@download/ENCFF413GIF.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF139EAR bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 6591880 ENCODE Processing Pipeline 9325df784d9bedd79174dcf72faeafdf https://www.encodeproject.org/files/ENCFF139EAR/@@download/ENCFF139EAR.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF195EME bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278NAG, ENCFF998GMZ 4582388 ENCODE Processing Pipeline 2f94b0529ae9ecc665a2ddfb4eaa134b https://www.encodeproject.org/files/ENCFF195EME/@@download/ENCFF195EME.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF003WNJ bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF025EMH, ENCFF234MAA 3377687 ENCODE Processing Pipeline d4b06404255adc7ffb5c2ff268b7bf7d https://www.encodeproject.org/files/ENCFF003WNJ/@@download/ENCFF003WNJ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF231INW bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 6751217 ENCODE Processing Pipeline 331c8978718931671fddcfa12f3f9df0 https://www.encodeproject.org/files/ENCFF231INW/@@download/ENCFF231INW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF631KGG bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 2 ENCFF565NDL, ENCFF629IGF 6882991 ENCODE Processing Pipeline 21938f7f59af7bd557b0d9db5a80ac3a https://www.encodeproject.org/files/ENCFF631KGG/@@download/ENCFF631KGG.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF753OLX bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 504591 ENCODE Processing Pipeline 7f0fd0a4ec1a19ce2d1dd6be0e5887e2 https://www.encodeproject.org/files/ENCFF753OLX/@@download/ENCFF753OLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF421XJF bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 2 ENCFF373VAU 6598220 ENCODE Processing Pipeline 6df0c539da65527f527ac44868a9cd3f https://www.encodeproject.org/files/ENCFF421XJF/@@download/ENCFF421XJF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF106CWI bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 3586452 ENCODE Processing Pipeline aa427312a1b7c1de79edac49970f5ef1 https://www.encodeproject.org/files/ENCFF106CWI/@@download/ENCFF106CWI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF987HSI bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 4571912 ENCODE Processing Pipeline 4d3e144ab7b5f8f68869361d01a844a0 https://www.encodeproject.org/files/ENCFF987HSI/@@download/ENCFF987HSI.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001XPQ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 869927 John Stamatoyannopoulos, UW 7996532948c808b2eb4f82e13c63593a https://www.encodeproject.org/files/ENCFF001XPQ/@@download/ENCFF001XPQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF724RQI bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 4731292 ENCODE Processing Pipeline 5c31453f4907d1601b859506d877fc64 https://www.encodeproject.org/files/ENCFF724RQI/@@download/ENCFF724RQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF719YRP bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 4541725 ENCODE Processing Pipeline be07150654ff67560989d7344ad9ffe7 https://www.encodeproject.org/files/ENCFF719YRP/@@download/ENCFF719YRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF001XTE bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 647688 John Stamatoyannopoulos, UW f866d5f14382ccd11bfb96f4ca5cadb0 https://www.encodeproject.org/files/ENCFF001XTE/@@download/ENCFF001XTE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF683BND bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 4720509 ENCODE Processing Pipeline acacafe644a7c1d953ed936107b9ca3b https://www.encodeproject.org/files/ENCFF683BND/@@download/ENCFF683BND.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XSQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 709699 John Stamatoyannopoulos, UW 930a63c21338dc088e87bc2ebc231136 https://www.encodeproject.org/files/ENCFF001XSQ/@@download/ENCFF001XSQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF883QKB bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 3070972 ENCODE Processing Pipeline 247d21ff9e5c2eea4eddd298ab499308 https://www.encodeproject.org/files/ENCFF883QKB/@@download/ENCFF883QKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF609KEQ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 6562166 ENCODE Processing Pipeline c9ecb892a86a5097da79006baf7c5a7a https://www.encodeproject.org/files/ENCFF609KEQ/@@download/ENCFF609KEQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF379LXD bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF732SBB, ENCFF837IOW 5008996 ENCODE Processing Pipeline 844d8d751abcaff398aa423ae8a993e9 https://www.encodeproject.org/files/ENCFF379LXD/@@download/ENCFF379LXD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF167THE bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF802IIV 2949066 ENCODE Processing Pipeline 7dc33457c7ce90d2589689d9fea3e183 https://www.encodeproject.org/files/ENCFF167THE/@@download/ENCFF167THE.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF144QTJ bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF488SVK, ENCFF641CEP 4860631 ENCODE Processing Pipeline cdbc480c0129042595322c94598b117f https://www.encodeproject.org/files/ENCFF144QTJ/@@download/ENCFF144QTJ.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF368NGK bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 5646841 ENCODE Processing Pipeline b58f5e76478991950ef4d8e8b5f0d8fd https://www.encodeproject.org/files/ENCFF368NGK/@@download/ENCFF368NGK.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF726YHM bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 3041994 ENCODE Processing Pipeline 1a28c8a592152dca965a48085b9c329b https://www.encodeproject.org/files/ENCFF726YHM/@@download/ENCFF726YHM.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF394RSM bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 2131563 ENCODE Processing Pipeline 14ba65ae5c45d842c41cd3fc22b91023 https://www.encodeproject.org/files/ENCFF394RSM/@@download/ENCFF394RSM.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF882KTD bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF054FYX, ENCFF294SLK 1711738 ENCODE Processing Pipeline f87f91d68e18cab8f0f3ffd8e24d22c4 https://www.encodeproject.org/files/ENCFF882KTD/@@download/ENCFF882KTD.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF514IDT bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD 6597708 ENCODE Processing Pipeline a21edc00eb3fd7ccf328b299898d43ae https://www.encodeproject.org/files/ENCFF514IDT/@@download/ENCFF514IDT.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF026LZC bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF139WTG, ENCFF864UEQ 6440257 ENCODE Processing Pipeline 1c283cf8f6ecdc9a3724224810a85c2b https://www.encodeproject.org/files/ENCFF026LZC/@@download/ENCFF026LZC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF385UJM bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF903NFJ 2968239 ENCODE Processing Pipeline be71180a21f77eb94e558d5b4a7d91cc https://www.encodeproject.org/files/ENCFF385UJM/@@download/ENCFF385UJM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001XSY bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HTX 827324 John Stamatoyannopoulos, UW 64a8c89348e3f69b4c3a9fc36cb0da51 https://www.encodeproject.org/files/ENCFF001XSY/@@download/ENCFF001XSY.bed.gz hg19 archived low read length, low read depth ENCFF095BZW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 4567243 ENCODE Processing Pipeline c79f4c4f32756d7ed9fc5ebc6ba00009 https://www.encodeproject.org/files/ENCFF095BZW/@@download/ENCFF095BZW.bed.gz hg19 released low read length, low read depth ENCFF598COF bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 4158761 ENCODE Processing Pipeline 988c853ef62ae5c1b99a14b507211924 https://www.encodeproject.org/files/ENCFF598COF/@@download/ENCFF598COF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF763YXP bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 2052776 ENCODE Processing Pipeline 291f711da6540d9f17763904a9aa0e40 https://www.encodeproject.org/files/ENCFF763YXP/@@download/ENCFF763YXP.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF332PXJ bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF180AFK, ENCFF425JYG 4452245 ENCODE Processing Pipeline c76c678b91febf4b32bbee4a07209890 https://www.encodeproject.org/files/ENCFF332PXJ/@@download/ENCFF332PXJ.bed.gz hg19 released low read length, borderline replicate concordance ENCFF257NTY bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 2 ENCFF203ABR, ENCFF257TDA 6739981 ENCODE Processing Pipeline 3f0a7592b6ffcfa92d2df40bab24c6ef https://www.encodeproject.org/files/ENCFF257NTY/@@download/ENCFF257NTY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF162PXN bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF632FAF 4866657 ENCODE Processing Pipeline cb09e43a8548d96a6b0d7f6dd4a2ed3c https://www.encodeproject.org/files/ENCFF162PXN/@@download/ENCFF162PXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF646NDI bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 1968931 ENCODE Processing Pipeline 8fa53b70dea97ab361bb124c40ed951e https://www.encodeproject.org/files/ENCFF646NDI/@@download/ENCFF646NDI.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF719OMW bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF945BSS 4757155 ENCODE Processing Pipeline b51e7e533d188036b29c628c6add1273 https://www.encodeproject.org/files/ENCFF719OMW/@@download/ENCFF719OMW.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF265CMT bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF214JZV, ENCFF334MOO 4860955 ENCODE Processing Pipeline 8f9f5dd16287956faa16cb47968de548 https://www.encodeproject.org/files/ENCFF265CMT/@@download/ENCFF265CMT.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF377UTP bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF378FXS, ENCFF512WDI 4628592 ENCODE Processing Pipeline 1f51be56a8b2367fb25ba99d8e936c45 https://www.encodeproject.org/files/ENCFF377UTP/@@download/ENCFF377UTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835OES bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 6570249 ENCODE Processing Pipeline 212a2ff40851d7621a349d36fec6ab6d https://www.encodeproject.org/files/ENCFF835OES/@@download/ENCFF835OES.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF411KUR bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 3774499 ENCODE Processing Pipeline 742a8111971ca27407f29349b300b741 https://www.encodeproject.org/files/ENCFF411KUR/@@download/ENCFF411KUR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF518BAN bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 2426289 ENCODE Processing Pipeline 25dfe68525a7de8c54c3f2ec7bebd924 https://www.encodeproject.org/files/ENCFF518BAN/@@download/ENCFF518BAN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF182AWR bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 5260689 ENCODE Processing Pipeline 0d7bb4ba36aaaddc656d121e2b42a299 https://www.encodeproject.org/files/ENCFF182AWR/@@download/ENCFF182AWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF731ASC bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF924BHS 5137571 ENCODE Processing Pipeline 70c6919ebd76472f12d1a27c903162d1 https://www.encodeproject.org/files/ENCFF731ASC/@@download/ENCFF731ASC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XQU bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 589612 John Stamatoyannopoulos, UW 689e2aab8c5f9cd690e2e38010bedccf https://www.encodeproject.org/files/ENCFF001XQU/@@download/ENCFF001XQU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF035ZLA bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 1729204 ENCODE Processing Pipeline 8dcb9fb047554a27bc9fe53c14fbd6d3 https://www.encodeproject.org/files/ENCFF035ZLA/@@download/ENCFF035ZLA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF696JUU bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 4050836 ENCODE Processing Pipeline 4a44bab8f4bcead504e3cb3893aca4f3 https://www.encodeproject.org/files/ENCFF696JUU/@@download/ENCFF696JUU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270KWZ bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 4858938 ENCODE Processing Pipeline 921c7d3a7304282c1fbd1270122c75c3 https://www.encodeproject.org/files/ENCFF270KWZ/@@download/ENCFF270KWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF072IAO bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 4618271 ENCODE Processing Pipeline ae10aa547fd6fab5d59fa959444e259c https://www.encodeproject.org/files/ENCFF072IAO/@@download/ENCFF072IAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF192TWT bed narrowPeak peaks ENCSR850KIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ASH2L-human DNA False 2017-11-28 ENCODE 2 ENCFF243MTV, ENCFF897ATK 7136661 ENCODE Processing Pipeline 3640e010c6f5232ebada781ac27e6bfb https://www.encodeproject.org/files/ENCFF192TWT/@@download/ENCFF192TWT.bed.gz hg19 released low read length experiment not submitted to GEO ENCFF520BPM bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF373FVR 2080267 ENCODE Processing Pipeline a2ad83f7f53d0ef17f4178ba6b549d57 https://www.encodeproject.org/files/ENCFF520BPM/@@download/ENCFF520BPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF475ICG bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 1785632 ENCODE Processing Pipeline 985f27c035f182ff8942dea5b697eda7 https://www.encodeproject.org/files/ENCFF475ICG/@@download/ENCFF475ICG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF299QBC bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF905QYS 4936211 ENCODE Processing Pipeline f3b583381aadd3ff4bf0f35c396944ba https://www.encodeproject.org/files/ENCFF299QBC/@@download/ENCFF299QBC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF385JVK bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 1525708 ENCODE Processing Pipeline f93457e811729a1fdec4d62809e3091c https://www.encodeproject.org/files/ENCFF385JVK/@@download/ENCFF385JVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF736TVE bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF217TNK, ENCFF549MIW 7089479 ENCODE Processing Pipeline d8b43446bf365191c7099b2922a953e5 https://www.encodeproject.org/files/ENCFF736TVE/@@download/ENCFF736TVE.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF887IBL bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 5347011 ENCODE Processing Pipeline 073cbf8f91573c530d13ce12e03197d0 https://www.encodeproject.org/files/ENCFF887IBL/@@download/ENCFF887IBL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF029AGK bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF243MTV, ENCFF419LUK, ENCFF727XHW 6395810 ENCODE Processing Pipeline 98a44503b6814c9924cd9b364c7bf979 https://www.encodeproject.org/files/ENCFF029AGK/@@download/ENCFF029AGK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF634DSI bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 5092351 ENCODE Processing Pipeline 312cb573a1d3431bd073463f0d75d458 https://www.encodeproject.org/files/ENCFF634DSI/@@download/ENCFF634DSI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF032KSH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 7028649 ENCODE Processing Pipeline ab4b197141ca1092321e093a44751d65 https://www.encodeproject.org/files/ENCFF032KSH/@@download/ENCFF032KSH.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF118LBD bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 4139029 ENCODE Processing Pipeline 9763bff5c78d156a3749165a3f71531d https://www.encodeproject.org/files/ENCFF118LBD/@@download/ENCFF118LBD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF442AZU bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB 4152781 ENCODE Processing Pipeline 6cbbb57baedf6b1cd681ac2fff80cd08 https://www.encodeproject.org/files/ENCFF442AZU/@@download/ENCFF442AZU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF745TRP bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 3520183 ENCODE Processing Pipeline 11415e78052308ca558ce5c13a8f6440 https://www.encodeproject.org/files/ENCFF745TRP/@@download/ENCFF745TRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF199EXY bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF854STG 3366093 ENCODE Processing Pipeline 168107b7246bbc33154ab14ac1c40b73 https://www.encodeproject.org/files/ENCFF199EXY/@@download/ENCFF199EXY.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF331SRY bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670GGQ, ENCFF750MIM 3812396 ENCODE Processing Pipeline f3876383ef270f662acdd18de7596855 https://www.encodeproject.org/files/ENCFF331SRY/@@download/ENCFF331SRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF637DKG bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 3805942 ENCODE Processing Pipeline 9e3e71ffed5f1b3f95cbd6697a875fcb https://www.encodeproject.org/files/ENCFF637DKG/@@download/ENCFF637DKG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF700BWV bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF468ZDX, ENCFF482NNF 3992676 ENCODE Processing Pipeline 9d32157d894fd70a374755130566ef07 https://www.encodeproject.org/files/ENCFF700BWV/@@download/ENCFF700BWV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF551TJN bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF893UBS 5928070 ENCODE Processing Pipeline 11b442b8018b0e3bb62e971e40848039 https://www.encodeproject.org/files/ENCFF551TJN/@@download/ENCFF551TJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF960NKG bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 4508906 ENCODE Processing Pipeline 06a8d9a3d2379245714e0e572d416e4d https://www.encodeproject.org/files/ENCFF960NKG/@@download/ENCFF960NKG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427TMP bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF152ZGE, ENCFF864ASU 4615839 ENCODE Processing Pipeline 36de372bcb08585842c4dd2c25d10e93 https://www.encodeproject.org/files/ENCFF427TMP/@@download/ENCFF427TMP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF172OLJ bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF966SKB 4995784 ENCODE Processing Pipeline 5c2db728b75c6df49b6e5c60823ab5d2 https://www.encodeproject.org/files/ENCFF172OLJ/@@download/ENCFF172OLJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF287VNA bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF264XSG, ENCFF980CFV 7020721 ENCODE Processing Pipeline efb9eeb34e0c180410461026285e9db1 https://www.encodeproject.org/files/ENCFF287VNA/@@download/ENCFF287VNA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF611EGN bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 199621 ENCODE Processing Pipeline 1185acb76f195bd1bc72cceeba189253 https://www.encodeproject.org/files/ENCFF611EGN/@@download/ENCFF611EGN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF011ZRR bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 2 ENCFF138FPL, ENCFF647LGE, ENCFF788FFM 4681633 ENCODE Processing Pipeline a4f8c8552ac239cf18baaac502d0326c https://www.encodeproject.org/files/ENCFF011ZRR/@@download/ENCFF011ZRR.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF326AWX bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ 4972678 ENCODE Processing Pipeline 1188e67a8edba26ab763fa335d0c8fbd https://www.encodeproject.org/files/ENCFF326AWX/@@download/ENCFF326AWX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF233VOB bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF081LSC, ENCFF385UZW, ENCFF451SVK 7031154 ENCODE Processing Pipeline 50d95775fa519159ed5d5427434147cd https://www.encodeproject.org/files/ENCFF233VOB/@@download/ENCFF233VOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF281VBW bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF822HFC 6390721 ENCODE Processing Pipeline 7a0c6ee271e217a9d7a0739ed77a469e https://www.encodeproject.org/files/ENCFF281VBW/@@download/ENCFF281VBW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF086NRZ bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325HRK, ENCFF610BER 5985023 ENCODE Processing Pipeline 5106a6356214e15fd438028efd958bd8 https://www.encodeproject.org/files/ENCFF086NRZ/@@download/ENCFF086NRZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF715JKT bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF419GSQ, ENCFF727XHW 5964812 ENCODE Processing Pipeline d1b15922d8591f3e82d7f13a3289accd https://www.encodeproject.org/files/ENCFF715JKT/@@download/ENCFF715JKT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF409CPX bed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF352UMD, ENCFF891DUU 450467 ENCODE Processing Pipeline 2f2367d2512c5c5c551356ee9c8753f6 https://www.encodeproject.org/files/ENCFF409CPX/@@download/ENCFF409CPX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF848MDV bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF096SRY, ENCFF243MTV, ENCFF727XHW 7004524 ENCODE Processing Pipeline 99406b60cb6b4af438dfa6c7604f4d5e https://www.encodeproject.org/files/ENCFF848MDV/@@download/ENCFF848MDV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF775VDO bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF483RYF 5527666 ENCODE Processing Pipeline 548cda6b87da52dac5690de85ceb6b1d https://www.encodeproject.org/files/ENCFF775VDO/@@download/ENCFF775VDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF315RID bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF161DLA, ENCFF408LVE 4497911 ENCODE Processing Pipeline 8839c5dbe8e64fe69ff2244011d78b7e https://www.encodeproject.org/files/ENCFF315RID/@@download/ENCFF315RID.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF031ZVS bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF819TOT 4174068 ENCODE Processing Pipeline 47231b1a5648f818b7f63399c4138828 https://www.encodeproject.org/files/ENCFF031ZVS/@@download/ENCFF031ZVS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF671MRQ bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 4415578 ENCODE Processing Pipeline 923cb3d41bb396499735f3ecefeedf4c https://www.encodeproject.org/files/ENCFF671MRQ/@@download/ENCFF671MRQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF448IAU bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF295UCD, ENCFF477UBE 6121363 ENCODE Processing Pipeline c83e7090607d46fe00bd0d46d58d80cd https://www.encodeproject.org/files/ENCFF448IAU/@@download/ENCFF448IAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF757USJ bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF010EZQ, ENCFF196FGA, ENCFF457SKJ 5109268 ENCODE Processing Pipeline 6d11fa34228f26e01c3787d337fc462f https://www.encodeproject.org/files/ENCFF757USJ/@@download/ENCFF757USJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF739TWP bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 6501404 ENCODE Processing Pipeline 860d76c0cd5d8dcce10658f8a1dcfaa6 https://www.encodeproject.org/files/ENCFF739TWP/@@download/ENCFF739TWP.bed.gz hg19 released low read length, mixed run types, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF306ACX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 839058 ENCODE Processing Pipeline d895e44989811c1f600d9f1c3e6f5865 https://www.encodeproject.org/files/ENCFF306ACX/@@download/ENCFF306ACX.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF574PXY bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF550HPW, ENCFF602XLT 5361804 ENCODE Processing Pipeline 494a83e3918dc7ece687d8a71a1106ff https://www.encodeproject.org/files/ENCFF574PXY/@@download/ENCFF574PXY.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF819JEC bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF204EXB, ENCFF602XLT 5566502 ENCODE Processing Pipeline fef965020e11f9ac397f74fdbfbaa7c1 https://www.encodeproject.org/files/ENCFF819JEC/@@download/ENCFF819JEC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF660YDK bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067NBD, ENCFF675VLP 3940055 ENCODE Processing Pipeline 54bf5195e47bf417a2a71499837ed9fa https://www.encodeproject.org/files/ENCFF660YDK/@@download/ENCFF660YDK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952DON bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 6654612 ENCODE Processing Pipeline 795e5b41a86fd9c0fb2ecffc0e96b4aa https://www.encodeproject.org/files/ENCFF952DON/@@download/ENCFF952DON.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001XPY bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 744052 John Stamatoyannopoulos, UW be40ff7b27fab09884f1348c4f84eaa2 https://www.encodeproject.org/files/ENCFF001XPY/@@download/ENCFF001XPY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF113ITH bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 4043793 ENCODE Processing Pipeline b90920bb9880c5fd648f636fc9d48cdf https://www.encodeproject.org/files/ENCFF113ITH/@@download/ENCFF113ITH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF583NBG bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 5054985 ENCODE Processing Pipeline 6aee239046d6bf1e67dc315de774e846 https://www.encodeproject.org/files/ENCFF583NBG/@@download/ENCFF583NBG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTO bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 777958 John Stamatoyannopoulos, UW 7b0383c6a7fa3159890f4a4d93fa8d93 https://www.encodeproject.org/files/ENCFF001XTO/@@download/ENCFF001XTO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF077RDH bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 4649659 ENCODE Processing Pipeline 8234eef88374edfa741369974e674b23 https://www.encodeproject.org/files/ENCFF077RDH/@@download/ENCFF077RDH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF844RNW bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF667KAV 6244216 ENCODE Processing Pipeline 6a704b18a3bcb0e80d7bd7757e5ef15a https://www.encodeproject.org/files/ENCFF844RNW/@@download/ENCFF844RNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF680SHJ bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF266TDL, ENCFF599MVB 5254209 ENCODE Processing Pipeline 9ee29cd848b56f13677e61357190a3d9 https://www.encodeproject.org/files/ENCFF680SHJ/@@download/ENCFF680SHJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF658PKF bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF289FZF, ENCFF425RUE 4934090 ENCODE Processing Pipeline bc55c5e801368d14b831b3e95136c066 https://www.encodeproject.org/files/ENCFF658PKF/@@download/ENCFF658PKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF602IZZ bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF262TII, ENCFF292YHA, ENCFF782VTV 5453299 ENCODE Processing Pipeline a174f43b96491f8700de62911f5d4e4b https://www.encodeproject.org/files/ENCFF602IZZ/@@download/ENCFF602IZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF856HRW bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF541JLQ, ENCFF782VTV 6347130 ENCODE Processing Pipeline eb3294abe547a5b343fbcceab1077db5 https://www.encodeproject.org/files/ENCFF856HRW/@@download/ENCFF856HRW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF764CZH bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 2665976 ENCODE Processing Pipeline 5abea8924974ef06db7224d4c8df8842 https://www.encodeproject.org/files/ENCFF764CZH/@@download/ENCFF764CZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XRO bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 752910 John Stamatoyannopoulos, UW 486773dda7ef061e739fa0dfe708e4eb https://www.encodeproject.org/files/ENCFF001XRO/@@download/ENCFF001XRO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF929WKT bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 4315314 ENCODE Processing Pipeline e4577815f1ab2bdb587257ef064d4803 https://www.encodeproject.org/files/ENCFF929WKT/@@download/ENCFF929WKT.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF066ONU bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 1856755 ENCODE Processing Pipeline 14200e538b452e7bd169c4e2b53985d9 https://www.encodeproject.org/files/ENCFF066ONU/@@download/ENCFF066ONU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF934NEI bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 4005719 ENCODE Processing Pipeline 1f1ed3ead872ba5694af582f563d0d81 https://www.encodeproject.org/files/ENCFF934NEI/@@download/ENCFF934NEI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF001XOZ bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 745778 John Stamatoyannopoulos, UW cdca511167e91115ca5b003bf223e53c https://www.encodeproject.org/files/ENCFF001XOZ/@@download/ENCFF001XOZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF380NLL bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF714YJQ 3095052 ENCODE Processing Pipeline e9565e54222ac649fc228c1d6c19bc85 https://www.encodeproject.org/files/ENCFF380NLL/@@download/ENCFF380NLL.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF447TGK bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 7014992 ENCODE Processing Pipeline 09b4f31bf7a2f51d844e195cf75df42d https://www.encodeproject.org/files/ENCFF447TGK/@@download/ENCFF447TGK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001XMY bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 766079 John Stamatoyannopoulos, UW 642d32758871ebed798792c9a8f867fb https://www.encodeproject.org/files/ENCFF001XMY/@@download/ENCFF001XMY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF532LQQ bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 3817285 ENCODE Processing Pipeline a0b5b1b9b91a6d0b9a4a0f52496581c7 https://www.encodeproject.org/files/ENCFF532LQQ/@@download/ENCFF532LQQ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF574RLW bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 7111374 ENCODE Processing Pipeline cf8a5f09dbdfe47045ca6d490ea4c67b https://www.encodeproject.org/files/ENCFF574RLW/@@download/ENCFF574RLW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF349TEE bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF014XIN, ENCFF703KFY 5564974 ENCODE Processing Pipeline e500b057792be6f6547430afa9303e78 https://www.encodeproject.org/files/ENCFF349TEE/@@download/ENCFF349TEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF809XWY bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 6326921 ENCODE Processing Pipeline fcc722041b99b0caa4b16f8e77572445 https://www.encodeproject.org/files/ENCFF809XWY/@@download/ENCFF809XWY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF762DPO bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 6710682 ENCODE Processing Pipeline a3a66b6bd31e940c5fd8b6a3bf81c923 https://www.encodeproject.org/files/ENCFF762DPO/@@download/ENCFF762DPO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF122POU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 1820030 ENCODE Processing Pipeline 3996b4cd7ed8486c8ccf3b1580007027 https://www.encodeproject.org/files/ENCFF122POU/@@download/ENCFF122POU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF523ODF bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 4519827 ENCODE Processing Pipeline 2e3e2f6ed744da703d91e8e1370c9b74 https://www.encodeproject.org/files/ENCFF523ODF/@@download/ENCFF523ODF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916MQB bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 4069521 ENCODE Processing Pipeline 8b4ab6409aa75db4f808f00cfeb1980f https://www.encodeproject.org/files/ENCFF916MQB/@@download/ENCFF916MQB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF961HHN bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 3417919 ENCODE Processing Pipeline 572f7c3e214505beabcacec7b3f66c51 https://www.encodeproject.org/files/ENCFF961HHN/@@download/ENCFF961HHN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF810TPO bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF901AZD 4567282 ENCODE Processing Pipeline c5d01a2bb3ce1f1091977d749d7e3002 https://www.encodeproject.org/files/ENCFF810TPO/@@download/ENCFF810TPO.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF512HLJ bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 4795321 ENCODE Processing Pipeline 3c17b1179cf2f3456c17a2153ee6c4f8 https://www.encodeproject.org/files/ENCFF512HLJ/@@download/ENCFF512HLJ.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF752POC bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5034659 ENCODE Processing Pipeline d8b4df92f482063a8f062a353f3e89b0 https://www.encodeproject.org/files/ENCFF752POC/@@download/ENCFF752POC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF368XWG bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 5431250 ENCODE Processing Pipeline 03e3bc481010a522f0be761ea0c49ec1 https://www.encodeproject.org/files/ENCFF368XWG/@@download/ENCFF368XWG.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001XLO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 946215 John Stamatoyannopoulos, UW b9276c97fe64d2aeb9b193e1852d731d https://www.encodeproject.org/files/ENCFF001XLO/@@download/ENCFF001XLO.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF115DAO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 4304795 ENCODE Processing Pipeline c8db2b2aab2e1aed3552f27a80ea6a95 https://www.encodeproject.org/files/ENCFF115DAO/@@download/ENCFF115DAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF643AZY bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF187CGT, ENCFF245PJA 3780692 ENCODE Processing Pipeline 74b066a2b4a0716e0f843177511226d9 https://www.encodeproject.org/files/ENCFF643AZY/@@download/ENCFF643AZY.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF306TSB bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF196OAS, ENCFF750MIM 6039123 ENCODE Processing Pipeline c11321251b025b40027c6c8665b8ea7a https://www.encodeproject.org/files/ENCFF306TSB/@@download/ENCFF306TSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF664OBH bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF269DQZ, ENCFF533ZHL 6449095 ENCODE Processing Pipeline be953678ce5d4619b2db06ef1201f885 https://www.encodeproject.org/files/ENCFF664OBH/@@download/ENCFF664OBH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF866YBG bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI 5679032 ENCODE Processing Pipeline d9c074312b0a7c04ed8fac5b05a55355 https://www.encodeproject.org/files/ENCFF866YBG/@@download/ENCFF866YBG.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF930KIS bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 4151818 ENCODE Processing Pipeline fe651af8616d0ff1d7b529fa8ae545d9 https://www.encodeproject.org/files/ENCFF930KIS/@@download/ENCFF930KIS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF796KTU bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF407WOE, ENCFF469INX 4669056 ENCODE Processing Pipeline b080662a3d8db6a185fd4615947e906f https://www.encodeproject.org/files/ENCFF796KTU/@@download/ENCFF796KTU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF814VNW bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF009VFJ, ENCFF248YTS 1629332 ENCODE Processing Pipeline d2859de620b6640f75ada3e783f2f069 https://www.encodeproject.org/files/ENCFF814VNW/@@download/ENCFF814VNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF446FKN bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF407WPP, ENCFF436BMH, ENCFF880DIZ 4259610 ENCODE Processing Pipeline 35279264f3e0ab7e73c32584f3fdb451 https://www.encodeproject.org/files/ENCFF446FKN/@@download/ENCFF446FKN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF504VLL bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 3854933 ENCODE Processing Pipeline 7b78071f18880830ee29c30fccc52ff4 https://www.encodeproject.org/files/ENCFF504VLL/@@download/ENCFF504VLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF175OAK bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF502ALK 4926544 ENCODE Processing Pipeline aad13ab9cb68b3b55c9bda0c603c69ee https://www.encodeproject.org/files/ENCFF175OAK/@@download/ENCFF175OAK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185JWL bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF525YRO 5058470 ENCODE Processing Pipeline 93a65a9f20b31a55bc321b949cf33fac https://www.encodeproject.org/files/ENCFF185JWL/@@download/ENCFF185JWL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTW bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 914739 John Stamatoyannopoulos, UW 1564f3e09164f441c6b6b87d8aaf9dd8 https://www.encodeproject.org/files/ENCFF001XTW/@@download/ENCFF001XTW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF655SOH bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 2728211 ENCODE Processing Pipeline a0247abb24ee37b1c64e2a77ebf176ee https://www.encodeproject.org/files/ENCFF655SOH/@@download/ENCFF655SOH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF532HJO bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF243MTV, ENCFF260SFQ, ENCFF727XHW 7194274 ENCODE Processing Pipeline 292b414655b7f6eab21bdefc6152531f https://www.encodeproject.org/files/ENCFF532HJO/@@download/ENCFF532HJO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF103CHJ bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF045IIX, ENCFF243MTV, ENCFF727XHW 6344716 ENCODE Processing Pipeline e771a09e722493675ca74a63cde648ca https://www.encodeproject.org/files/ENCFF103CHJ/@@download/ENCFF103CHJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF490MZG bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF655DGW 4001821 ENCODE Processing Pipeline 5300bf223133f6471202a8af9c24f8eb https://www.encodeproject.org/files/ENCFF490MZG/@@download/ENCFF490MZG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF753PAD bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF453WTN, ENCFF864UEQ 6522150 ENCODE Processing Pipeline a07a80ab4d763e7203684d5de4a55473 https://www.encodeproject.org/files/ENCFF753PAD/@@download/ENCFF753PAD.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF825VQR bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 179486 ENCODE Processing Pipeline 8c675139cf606e34fb00e7098b1ea42c https://www.encodeproject.org/files/ENCFF825VQR/@@download/ENCFF825VQR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF532VDQ bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF123VAK, ENCFF356DXM 4740720 ENCODE Processing Pipeline 02e839bde6921f2f70918ae05f02055d https://www.encodeproject.org/files/ENCFF532VDQ/@@download/ENCFF532VDQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF281JKH bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF972DXD 6848388 ENCODE Processing Pipeline e8bf9842b756def80236cb07a1e8a6a7 https://www.encodeproject.org/files/ENCFF281JKH/@@download/ENCFF281JKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF099MXC bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF840QLL, ENCFF963CVB 4556867 ENCODE Processing Pipeline 4815bbf64cefc1a6c8ecac7b0fb849db https://www.encodeproject.org/files/ENCFF099MXC/@@download/ENCFF099MXC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF390NBA bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041ZFB, ENCFF863QPG 6150432 ENCODE Processing Pipeline 9ced55e786aac370c68f2a0faf690ed2 https://www.encodeproject.org/files/ENCFF390NBA/@@download/ENCFF390NBA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF432ZAJ bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 4588028 ENCODE Processing Pipeline 3eb617841a00bc517609b1395beacdb2 https://www.encodeproject.org/files/ENCFF432ZAJ/@@download/ENCFF432ZAJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRS bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 914710 John Stamatoyannopoulos, UW e4941c4dd7c4f1b48e64f78b287a894a https://www.encodeproject.org/files/ENCFF001XRS/@@download/ENCFF001XRS.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF681HOI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 3876040 ENCODE Processing Pipeline 37fe4fb77504747cd446d054bac925cf https://www.encodeproject.org/files/ENCFF681HOI/@@download/ENCFF681HOI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF739OBK bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF727XHW, ENCFF980QXM 6784905 ENCODE Processing Pipeline d008bca9f779d0d2c3a544ab46b011fa https://www.encodeproject.org/files/ENCFF739OBK/@@download/ENCFF739OBK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF374BCB bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF124AWF, ENCFF509ANO 6517166 ENCODE Processing Pipeline 2b7f85d2429f2bcae158980453ddfda3 https://www.encodeproject.org/files/ENCFF374BCB/@@download/ENCFF374BCB.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF644MVI bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 5401132 ENCODE Processing Pipeline 2d9ed99c4264b18ec0eb5cc5200d7a3d https://www.encodeproject.org/files/ENCFF644MVI/@@download/ENCFF644MVI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF666HPI bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF536VAX, ENCFF549XKN, ENCFF638ZDZ 6366854 ENCODE Processing Pipeline 94a2d4a11337fcc5323421521394cb4b https://www.encodeproject.org/files/ENCFF666HPI/@@download/ENCFF666HPI.bed.gz hg19 released biological replicates with identical biosample ENCFF163ZFQ bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 2818433 ENCODE Processing Pipeline c6f4e290a05030a7b7d4cb89d6b57354 https://www.encodeproject.org/files/ENCFF163ZFQ/@@download/ENCFF163ZFQ.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF573RFU bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF520MDX 6077110 ENCODE Processing Pipeline 599496252528fdea7244093fa141342e https://www.encodeproject.org/files/ENCFF573RFU/@@download/ENCFF573RFU.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF603MIK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 5314419 ENCODE Processing Pipeline ee5a355f368bb1f332b14bf6fe358d49 https://www.encodeproject.org/files/ENCFF603MIK/@@download/ENCFF603MIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF920STO bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 5595559 ENCODE Processing Pipeline aa22a83230d12c3c1501bbe6b932b482 https://www.encodeproject.org/files/ENCFF920STO/@@download/ENCFF920STO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001XSE bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 776564 John Stamatoyannopoulos, UW 0c1112e2abc6aefb6a2c453d39ab8034 https://www.encodeproject.org/files/ENCFF001XSE/@@download/ENCFF001XSE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF583GIR bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 2627094 ENCODE Processing Pipeline f78b903b92860b4aee482b081121c9f2 https://www.encodeproject.org/files/ENCFF583GIR/@@download/ENCFF583GIR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF242UCP bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF547HWS 4719580 ENCODE Processing Pipeline b15b40e59b9c3ddb1cf976fea482ddac https://www.encodeproject.org/files/ENCFF242UCP/@@download/ENCFF242UCP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF578WGS bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF007VCY, ENCFF243MTV, ENCFF727XHW 6608236 ENCODE Processing Pipeline 0bda3638e7fc36d52e53e33e7d5d4b77 https://www.encodeproject.org/files/ENCFF578WGS/@@download/ENCFF578WGS.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF180IOD bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 1664046 ENCODE Processing Pipeline 25edd2cbc14db3f96a0fc4f8ec35b1b7 https://www.encodeproject.org/files/ENCFF180IOD/@@download/ENCFF180IOD.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF001XTS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 859303 John Stamatoyannopoulos, UW 772bfb88e8cf6aad3cae3467a73f969d https://www.encodeproject.org/files/ENCFF001XTS/@@download/ENCFF001XTS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF116ONS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 2413791 ENCODE Processing Pipeline 4f2cc4f0d15588e8ef5b158611ddeea3 https://www.encodeproject.org/files/ENCFF116ONS/@@download/ENCFF116ONS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF106WXI bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF508VRU 4459629 ENCODE Processing Pipeline 28a4597f2f0ebdeb3dba733477d56e22 https://www.encodeproject.org/files/ENCFF106WXI/@@download/ENCFF106WXI.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF680RJL bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF933UZL 4751355 ENCODE Processing Pipeline 38abeff3fc852c44aa7c49eeeadb138d https://www.encodeproject.org/files/ENCFF680RJL/@@download/ENCFF680RJL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XLW bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 686601 John Stamatoyannopoulos, UW 9a73acbd7472db4a7a7a0192a772fcb1 https://www.encodeproject.org/files/ENCFF001XLW/@@download/ENCFF001XLW.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF940KDS bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 4277579 ENCODE Processing Pipeline f0b64264e8de07915ba761ea65af7b29 https://www.encodeproject.org/files/ENCFF940KDS/@@download/ENCFF940KDS.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF039SJR bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF578QOG, ENCFF599MVB 4777767 ENCODE Processing Pipeline a708c703d30c3bf40c1e769353e5b793 https://www.encodeproject.org/files/ENCFF039SJR/@@download/ENCFF039SJR.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF453GLP bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF696ANF, ENCFF750MIM 4405161 ENCODE Processing Pipeline 51309dfc21ce52b1d5332ff936e37bda https://www.encodeproject.org/files/ENCFF453GLP/@@download/ENCFF453GLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF646DRT bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF610BER, ENCFF898BAG 5095276 ENCODE Processing Pipeline 2802d759fa459b435e634f07e02dd257 https://www.encodeproject.org/files/ENCFF646DRT/@@download/ENCFF646DRT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF430MIT bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF372NSY, ENCFF671VNQ 6352567 ENCODE Processing Pipeline c70736f8d80e28fc79b8d0957d92645b https://www.encodeproject.org/files/ENCFF430MIT/@@download/ENCFF430MIT.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF327OZA bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF766XHO 5195945 ENCODE Processing Pipeline 02e069ab850d2bc8130c4d989a9a0699 https://www.encodeproject.org/files/ENCFF327OZA/@@download/ENCFF327OZA.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF038SPJ bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF220EVN, ENCFF960JYT 5468660 ENCODE Processing Pipeline f37bb50273e61791e7b38fac40db20ca https://www.encodeproject.org/files/ENCFF038SPJ/@@download/ENCFF038SPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF479LKN bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF954NZI 4433393 ENCODE Processing Pipeline 94fa5d6611ef829f5f3c388c14d144de https://www.encodeproject.org/files/ENCFF479LKN/@@download/ENCFF479LKN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF881ZSX bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 4229342 ENCODE Processing Pipeline 0b3344f3b272c6e547f3a91c5c0b799b https://www.encodeproject.org/files/ENCFF881ZSX/@@download/ENCFF881ZSX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF214AAT bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 4828973 ENCODE Processing Pipeline 7493298ac1ae24dc05127a63c9198348 https://www.encodeproject.org/files/ENCFF214AAT/@@download/ENCFF214AAT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF631NXF bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF579FIX, ENCFF901AZD, ENCFF966AYA 3892753 ENCODE Processing Pipeline 3b78ed24857b2f33172aacc9e0c4ef5e https://www.encodeproject.org/files/ENCFF631NXF/@@download/ENCFF631NXF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF299IER bed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 2 ENCFF243MTV, ENCFF629FYM, ENCFF727XHW 6422356 ENCODE Processing Pipeline b9c58591c2ea2ed7a818e92128130f8c https://www.encodeproject.org/files/ENCFF299IER/@@download/ENCFF299IER.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF146YXX bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 937915 ENCODE Processing Pipeline 5a4600cdc6485de1e8feaea493b849e8 https://www.encodeproject.org/files/ENCFF146YXX/@@download/ENCFF146YXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth