ENCFF940NRT bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7019893 ENCODE Processing Pipeline 5936d3a4c380f4b13628191fba4e233b https://www.encodeproject.org/files/ENCFF940NRT/@@download/ENCFF940NRT.bed.gz hg19 released mild to moderate bottlenecking ENCFF731JDO bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7095383 ENCODE Processing Pipeline c35cf7cbae9e72bc00e9688c8705e0b5 https://www.encodeproject.org/files/ENCFF731JDO/@@download/ENCFF731JDO.bed.gz hg19 archived mild to moderate bottlenecking ENCFF842STK bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 5744360 ENCODE Processing Pipeline dd0c6deb8ecd5d8954ff908d0cda5c4f https://www.encodeproject.org/files/ENCFF842STK/@@download/ENCFF842STK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF078PIE bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6311743 ENCODE Processing Pipeline ee37f60c860060fa2eddc8e9ed804e77 https://www.encodeproject.org/files/ENCFF078PIE/@@download/ENCFF078PIE.bed.gz hg19 released antibody characterized with exemption ENCFF730HVB bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF511YMN 6464073 ENCODE Processing Pipeline abd3110af11b2e8ce9790aa37353990d https://www.encodeproject.org/files/ENCFF730HVB/@@download/ENCFF730HVB.bed.gz hg19 archived antibody characterized with exemption ENCFF670KBE bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 6408804 ENCODE Processing Pipeline e30b7c45b6616618875246c074065c8f https://www.encodeproject.org/files/ENCFF670KBE/@@download/ENCFF670KBE.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF337ISL bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 6500158 ENCODE Processing Pipeline ea9c81a1b970ba86b392f3154ebd0115 https://www.encodeproject.org/files/ENCFF337ISL/@@download/ENCFF337ISL.bed.gz hg19 released antibody characterized with exemption ENCFF842XXA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 6676264 ENCODE Processing Pipeline f94f0bcb0b973bf3126547a8d5a59a2e https://www.encodeproject.org/files/ENCFF842XXA/@@download/ENCFF842XXA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF338NAH bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 6424347 ENCODE Processing Pipeline a0e6904c4853be483cc4109cec75962b https://www.encodeproject.org/files/ENCFF338NAH/@@download/ENCFF338NAH.bed.gz hg19 released low read depth ENCFF790EAG bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF621AIX, ENCFF941TZZ 7075209 ENCODE Processing Pipeline 57175cbb3e3b259b17307f4ba23ad295 https://www.encodeproject.org/files/ENCFF790EAG/@@download/ENCFF790EAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF358UWQ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 5981773 ENCODE Processing Pipeline ca1bc3fdc58e3c336e9dd1a26d572ffe https://www.encodeproject.org/files/ENCFF358UWQ/@@download/ENCFF358UWQ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF721GUV bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 6499363 ENCODE Processing Pipeline bf67c0603423efddd5ece0d9967c5b30 https://www.encodeproject.org/files/ENCFF721GUV/@@download/ENCFF721GUV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF769CZK bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 2 ENCFF413UKW, ENCFF592WAL, ENCFF901CND 7051051 ENCODE Processing Pipeline 7beb67f9bab7888ff35378531645d6bc https://www.encodeproject.org/files/ENCFF769CZK/@@download/ENCFF769CZK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF291LKR bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 2 ENCFF118FTD, ENCFF447KVS, ENCFF823USR 6813767 ENCODE Processing Pipeline 9e82a33c04f76e8a0849ad996675e0cc https://www.encodeproject.org/files/ENCFF291LKR/@@download/ENCFF291LKR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF094YIY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 6297379 ENCODE Processing Pipeline 642dae0844a0e8d8dd075f82b553215f https://www.encodeproject.org/files/ENCFF094YIY/@@download/ENCFF094YIY.bed.gz hg19 released low read depth ENCFF164BVB bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 7021524 ENCODE Processing Pipeline f0b86a668bd367ffc7369bf13feb85fa https://www.encodeproject.org/files/ENCFF164BVB/@@download/ENCFF164BVB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF086FEW bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 5994594 ENCODE Processing Pipeline 1a05c82267f19e88a3885da5e35280e9 https://www.encodeproject.org/files/ENCFF086FEW/@@download/ENCFF086FEW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF500GHH bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 2 ENCFF592WAL, ENCFF683DXC, ENCFF901CND 6986623 ENCODE Processing Pipeline c85d20f14641924408142531cfafdd20 https://www.encodeproject.org/files/ENCFF500GHH/@@download/ENCFF500GHH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF292SNP bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 7252193 ENCODE Processing Pipeline e75f3e53f1fb259d8bc04167166d255b https://www.encodeproject.org/files/ENCFF292SNP/@@download/ENCFF292SNP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF904YUH bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 6830870 ENCODE Processing Pipeline 6d5890f88e3ef7e3c6dc6be88c11c67e https://www.encodeproject.org/files/ENCFF904YUH/@@download/ENCFF904YUH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF074NKQ bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 6763727 ENCODE Processing Pipeline 4fcc50d833fbd8658c629457a34785d8 https://www.encodeproject.org/files/ENCFF074NKQ/@@download/ENCFF074NKQ.bed.gz hg19 released missing genetic modification characterization ENCFF320JKZ bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 7163528 ENCODE Processing Pipeline abde4ca054c2bc93c58be11b81372073 https://www.encodeproject.org/files/ENCFF320JKZ/@@download/ENCFF320JKZ.bed.gz hg19 released ENCFF079CJA bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF233XVJ, ENCFF321UJV 6422117 ENCODE Processing Pipeline 7462f67a9e73f083935846d663700f1c https://www.encodeproject.org/files/ENCFF079CJA/@@download/ENCFF079CJA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF061SPB bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF321UJV, ENCFF679ZOV 6554758 ENCODE Processing Pipeline 22e0f0e2365c35a539a3b4e0a3c695c2 https://www.encodeproject.org/files/ENCFF061SPB/@@download/ENCFF061SPB.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF892HJT bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 5874459 ENCODE Processing Pipeline f7b54c7101852b2eae0e6453528c8cd5 https://www.encodeproject.org/files/ENCFF892HJT/@@download/ENCFF892HJT.bed.gz hg19 released low read depth, moderate library complexity ENCFF525BTB bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF042TMG, ENCFF200LFK, ENCFF321UJV 5933870 ENCODE Processing Pipeline 9fb64c313269a4d08781b473454a6aab https://www.encodeproject.org/files/ENCFF525BTB/@@download/ENCFF525BTB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF150BYS bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF812LHP 6089239 ENCODE Processing Pipeline a57b3bdcaa277249137b0364c06f5fe0 https://www.encodeproject.org/files/ENCFF150BYS/@@download/ENCFF150BYS.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF629JUA bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 2 ENCFF064YNC, ENCFF449ZKA 5765663 ENCODE Processing Pipeline 9915636e438fd998572c529133ee8315 https://www.encodeproject.org/files/ENCFF629JUA/@@download/ENCFF629JUA.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF533OLJ bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF674SQJ, ENCFF850ZDJ 6215046 ENCODE Processing Pipeline 68dc3be13a3520b559f5ef82686f09cd https://www.encodeproject.org/files/ENCFF533OLJ/@@download/ENCFF533OLJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF260JMM bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 7100744 ENCODE Processing Pipeline 088d643e4c1e293ba708b5d62b327189 https://www.encodeproject.org/files/ENCFF260JMM/@@download/ENCFF260JMM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF684BFS bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF566XEP, ENCFF583FAG 6787867 ENCODE Processing Pipeline 8319f4102b9aedff494905f19ef8f383 https://www.encodeproject.org/files/ENCFF684BFS/@@download/ENCFF684BFS.bed.gz hg19 released borderline replicate concordance ENCFF503OBN bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF214ARE 5755072 ENCODE Processing Pipeline f8794d5e8f772bef1577ef5fbc5d51f8 https://www.encodeproject.org/files/ENCFF503OBN/@@download/ENCFF503OBN.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF997CFJ bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 2 ENCFF108FPL, ENCFF289GAC, ENCFF969DYI 6903752 ENCODE Processing Pipeline 67fb6eeedc4b1740e5e61448727e6b0a https://www.encodeproject.org/files/ENCFF997CFJ/@@download/ENCFF997CFJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF501YCY bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 2 ENCFF257TLH, ENCFF498EIA, ENCFF631FAS 4563885 ENCODE Processing Pipeline 1f94db6c1eb1a51247b39e7ce1f0efb8 https://www.encodeproject.org/files/ENCFF501YCY/@@download/ENCFF501YCY.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF044MZF bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF018ELX, ENCFF235CCD 6541951 ENCODE Processing Pipeline 52901ea7efa04a261a8663c35d9b394f https://www.encodeproject.org/files/ENCFF044MZF/@@download/ENCFF044MZF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF312HIY bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 2 ENCFF231HAE, ENCFF850IFD 6044308 ENCODE Processing Pipeline ebe12bf0fe74dbbc4732b2be7c5f61ba https://www.encodeproject.org/files/ENCFF312HIY/@@download/ENCFF312HIY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF755MSZ bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF348RHT, ENCFF654EHF, ENCFF991UTU 6527404 ENCODE Processing Pipeline e09b319f1570533cfd2fd14888b6b00a https://www.encodeproject.org/files/ENCFF755MSZ/@@download/ENCFF755MSZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF309SZA bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 7176855 ENCODE Processing Pipeline 49d352536c4577a2bfc11622141afab3 https://www.encodeproject.org/files/ENCFF309SZA/@@download/ENCFF309SZA.bed.gz hg19 released antibody characterized with exemption ENCFF223YLF bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF450MML, ENCFF877WMR 5991733 ENCODE Processing Pipeline 77fdd9901e99405f2b0f8361c89f4160 https://www.encodeproject.org/files/ENCFF223YLF/@@download/ENCFF223YLF.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF683XUE bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF226JIO, ENCFF654EHF, ENCFF991UTU 6640502 ENCODE Processing Pipeline a92ccb7ce2085187d5b8fb784cc26d1a https://www.encodeproject.org/files/ENCFF683XUE/@@download/ENCFF683XUE.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF642PNJ bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF805KOB, ENCFF991UTU 6798252 ENCODE Processing Pipeline 26d75710470840306cb32104ceea008c https://www.encodeproject.org/files/ENCFF642PNJ/@@download/ENCFF642PNJ.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF288BMB bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6894601 ENCODE Processing Pipeline 3001eca0f6ac4c5cc4f2cb18927cab12 https://www.encodeproject.org/files/ENCFF288BMB/@@download/ENCFF288BMB.bed.gz hg19 released mild to moderate bottlenecking ENCFF138RWJ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6970449 ENCODE Processing Pipeline afd34a6b4a486fa0b6feb85b2992031d https://www.encodeproject.org/files/ENCFF138RWJ/@@download/ENCFF138RWJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF724ZSR bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF739CZU 6247130 ENCODE Processing Pipeline 6c74b521dba8fe462b798f1c39c88d80 https://www.encodeproject.org/files/ENCFF724ZSR/@@download/ENCFF724ZSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF021DHZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 7016934 ENCODE Processing Pipeline 2b207983b554dccb298e6a982558fbca https://www.encodeproject.org/files/ENCFF021DHZ/@@download/ENCFF021DHZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF957ZSV bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 2 ENCFF093OXI, ENCFF571VVW, ENCFF935JGC 7162873 ENCODE Processing Pipeline fccf32e633236ef2f1eadcd05e030145 https://www.encodeproject.org/files/ENCFF957ZSV/@@download/ENCFF957ZSV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF628SZN bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 2 ENCFF494NAS, ENCFF529BVI, ENCFF772FBN 7017958 ENCODE Processing Pipeline 40baa9d3ad2a2333d6635f9b35981915 https://www.encodeproject.org/files/ENCFF628SZN/@@download/ENCFF628SZN.bed.gz hg19 released mild to moderate bottlenecking ENCFF876JTC bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF991LRY 5502916 ENCODE Processing Pipeline 663e8cff958659837f3a59336b470f2e https://www.encodeproject.org/files/ENCFF876JTC/@@download/ENCFF876JTC.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF255SKA bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 2 ENCFF428WCT, ENCFF871NUZ 5910983 ENCODE Processing Pipeline 1a54775e476764cdb5f9af5bd2641d90 https://www.encodeproject.org/files/ENCFF255SKA/@@download/ENCFF255SKA.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF693ETV bed narrowPeak peaks ENCSR998NQG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2017-02-01 ENCODE 2 ENCFF004MGP, ENCFF950BSF 5946564 ENCODE Processing Pipeline 8eeb8e9ed18535d626ef61e81c346fd9 https://www.encodeproject.org/files/ENCFF693ETV/@@download/ENCFF693ETV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF183FOU bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 7199777 ENCODE Processing Pipeline bad146c1707938eeacedc3cfa7174b29 https://www.encodeproject.org/files/ENCFF183FOU/@@download/ENCFF183FOU.bed.gz hg19 released missing genetic modification characterization ENCFF021SAT bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 2 ENCFF466DBM, ENCFF592WAL, ENCFF901CND 7094220 ENCODE Processing Pipeline c0ae0e7431a531a017941e22c329a15d https://www.encodeproject.org/files/ENCFF021SAT/@@download/ENCFF021SAT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF749DAY bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 2 ENCFF434WMV, ENCFF817NEK 4929972 ENCODE Processing Pipeline 3b8c3d33e1caae806ca1df659f13255a https://www.encodeproject.org/files/ENCFF749DAY/@@download/ENCFF749DAY.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF458XHM bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 2 ENCFF049MPQ, ENCFF778MHV 6307940 ENCODE Processing Pipeline 00f2227c2eaa7b204dae32cbc33ff181 https://www.encodeproject.org/files/ENCFF458XHM/@@download/ENCFF458XHM.bed.gz hg19 released antibody characterized with exemption ENCFF863GRL bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 2 ENCFF447KVS, ENCFF815ASL, ENCFF823USR 7074759 ENCODE Processing Pipeline 5263cdd4b03cbdcb27cb531a43af6cc7 https://www.encodeproject.org/files/ENCFF863GRL/@@download/ENCFF863GRL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF816KBT bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 6588877 ENCODE Processing Pipeline 5abbf5c5eef77f27ff04b1ba5489df94 https://www.encodeproject.org/files/ENCFF816KBT/@@download/ENCFF816KBT.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF117BUH bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF545ZPB 6693164 ENCODE Processing Pipeline 1733f5034e78fa24ebe8b64d686bc922 https://www.encodeproject.org/files/ENCFF117BUH/@@download/ENCFF117BUH.bed.gz hg19 released ENCFF482LKM bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF591PLS 6444097 ENCODE Processing Pipeline c3ce88fd1d3c7ec3c755107b7a8bac6e https://www.encodeproject.org/files/ENCFF482LKM/@@download/ENCFF482LKM.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF810MGC bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 6915987 ENCODE Processing Pipeline a3c8fdc3ddfd955a8ff0e3dc31180d4d https://www.encodeproject.org/files/ENCFF810MGC/@@download/ENCFF810MGC.bed.gz hg19 released mild to moderate bottlenecking ENCFF820VNX bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF965EEE 6994783 ENCODE Processing Pipeline ac58b0e39d12400874b8ef450dcc5ddd https://www.encodeproject.org/files/ENCFF820VNX/@@download/ENCFF820VNX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF669TVR bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF965CLW 6305494 ENCODE Processing Pipeline 121da7a2bbfcddf37cdbc51915df2bac https://www.encodeproject.org/files/ENCFF669TVR/@@download/ENCFF669TVR.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF875TQG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 6802573 ENCODE Processing Pipeline 51bb4cfa7573995a9a30f2d4d51524c1 https://www.encodeproject.org/files/ENCFF875TQG/@@download/ENCFF875TQG.bed.gz hg19 released antibody characterized with exemption ENCFF386GSB bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 2 ENCFF287QCE, ENCFF455SPG, ENCFF853BBD 6557928 ENCODE Processing Pipeline 0944330696de858e261473889af491e0 https://www.encodeproject.org/files/ENCFF386GSB/@@download/ENCFF386GSB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF716AIG bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 7115295 ENCODE Processing Pipeline e9e72796ae9f43e88c1043dfb722ab1f https://www.encodeproject.org/files/ENCFF716AIG/@@download/ENCFF716AIG.bed.gz hg19 released low read depth ENCFF275QAK bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 2 ENCFF274XMR, ENCFF387KXA, ENCFF762JSN 7273636 ENCODE Processing Pipeline 24909a9398aa118c1234229d3581211d https://www.encodeproject.org/files/ENCFF275QAK/@@download/ENCFF275QAK.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF959GOJ bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 2 ENCFF342NSJ, ENCFF447KVS, ENCFF823USR 7163278 ENCODE Processing Pipeline 537b25e0e2c55fd780856aec3b2305e0 https://www.encodeproject.org/files/ENCFF959GOJ/@@download/ENCFF959GOJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF372IMH bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF447KVS, ENCFF618PNT, ENCFF823USR 6616557 ENCODE Processing Pipeline d0198a60543d495af1b7e9646ee40e5a https://www.encodeproject.org/files/ENCFF372IMH/@@download/ENCFF372IMH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF501IBL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 7042297 ENCODE Processing Pipeline 36a535e24307ab7e0d632800d161ebbd https://www.encodeproject.org/files/ENCFF501IBL/@@download/ENCFF501IBL.bed.gz hg19 released mild to moderate bottlenecking ENCFF033WHB bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF025JEN, ENCFF267FMB, ENCFF378YAW 3997652 ENCODE Processing Pipeline 9f73e493214f321be84d88fcc40ae23d https://www.encodeproject.org/files/ENCFF033WHB/@@download/ENCFF033WHB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF639APX bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF410PKI, ENCFF950YAN 1333674 ENCODE Processing Pipeline 387e0af54d0a526e1bacee665d50a446 https://www.encodeproject.org/files/ENCFF639APX/@@download/ENCFF639APX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF003TOD bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF987UCV 5394737 ENCODE Processing Pipeline e51539b0a46991b9c84fffe5205f9087 https://www.encodeproject.org/files/ENCFF003TOD/@@download/ENCFF003TOD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF328CFX bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF401UTY, ENCFF801WHL, ENCFF923EBC 7136440 ENCODE Processing Pipeline 810236d029fcaf78be8fa13ce6816e7d https://www.encodeproject.org/files/ENCFF328CFX/@@download/ENCFF328CFX.bed.gz hg19 released mild to moderate bottlenecking ENCFF954MNX bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032SQZ, ENCFF161AYB 4017745 ENCODE Processing Pipeline ecdf168ac071ca6829d0be3973069f39 https://www.encodeproject.org/files/ENCFF954MNX/@@download/ENCFF954MNX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF211SVA bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 2 ENCFF784FIO, ENCFF941TZZ 6924816 ENCODE Processing Pipeline 5528a183e778bf623e56668345a1f83d https://www.encodeproject.org/files/ENCFF211SVA/@@download/ENCFF211SVA.bed.gz hg19 released ENCFF348CSG bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 2 ENCFF100LIK, ENCFF592WAL 6747071 ENCODE Processing Pipeline d4dc54ad489f3d6b04ffc30b0091448b https://www.encodeproject.org/files/ENCFF348CSG/@@download/ENCFF348CSG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF458VAF bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF140ELP, ENCFF583FAG 6781614 ENCODE Processing Pipeline e3cc23ee7d187047a4a7a8fe7da20e68 https://www.encodeproject.org/files/ENCFF458VAF/@@download/ENCFF458VAF.bed.gz hg19 released antibody characterized with exemption ENCFF869FPC bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 2 ENCFF708YID, ENCFF801GGG, ENCFF881DVS 6521460 ENCODE Processing Pipeline 044447908dfa91b726508ee6e9bc13bd https://www.encodeproject.org/files/ENCFF869FPC/@@download/ENCFF869FPC.bed.gz hg19 released missing control alignments ENCFF757QKH bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6091251 ENCODE Processing Pipeline 055a53216518c26f07711740a76aa0f8 https://www.encodeproject.org/files/ENCFF757QKH/@@download/ENCFF757QKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF681JGU bed narrowPeak peaks ENCSR638QYO ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF121NJR, ENCFF321TUP 6297209 ENCODE Processing Pipeline 2315bfbb3f3eff54642a7e9fdfb40efe https://www.encodeproject.org/files/ENCFF681JGU/@@download/ENCFF681JGU.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF500PCI bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF957ELP 6184115 ENCODE Processing Pipeline 9dfe921383062e98cf5d937a114b8b4d https://www.encodeproject.org/files/ENCFF500PCI/@@download/ENCFF500PCI.bed.gz hg19 released borderline replicate concordance ENCFF904OAW bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 2 ENCFF302SCR, ENCFF999EQI 6162004 ENCODE Processing Pipeline c0e2723097c48f7a7a56c2195de986d5 https://www.encodeproject.org/files/ENCFF904OAW/@@download/ENCFF904OAW.bed.gz hg19 released ENCFF086WBN bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF174YPE, ENCFF534AFH 6039099 ENCODE Processing Pipeline 4f2ff68cfdf21588992ce9392bcc0126 https://www.encodeproject.org/files/ENCFF086WBN/@@download/ENCFF086WBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF222IPA bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF068ULX, ENCFF278ROO, ENCFF959UDN 7317471 ENCODE Processing Pipeline c4bb1ea6ab46ad9239a67648d69ef2b4 https://www.encodeproject.org/files/ENCFF222IPA/@@download/ENCFF222IPA.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF208MYK bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF148POB, ENCFF172XZA, ENCFF843IXX 6699545 ENCODE Processing Pipeline f498ff7c88c3fc3a35af8cbdea109157 https://www.encodeproject.org/files/ENCFF208MYK/@@download/ENCFF208MYK.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF609LOZ bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 5522784 ENCODE Processing Pipeline 90f8e7d8022f73e44109afeff47bf187 https://www.encodeproject.org/files/ENCFF609LOZ/@@download/ENCFF609LOZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF056MRN bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 2 ENCFF049MPQ, ENCFF394QUX 6177313 ENCODE Processing Pipeline b6d7d75ce5807193eb368c2c9f2fc195 https://www.encodeproject.org/files/ENCFF056MRN/@@download/ENCFF056MRN.bed.gz hg19 released ENCFF026SKI bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 6500124 ENCODE Processing Pipeline e9deff36e8ad4de02867558a33ef1222 https://www.encodeproject.org/files/ENCFF026SKI/@@download/ENCFF026SKI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF824HYC bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF307YVY, ENCFF956QBZ 5534107 ENCODE Processing Pipeline e2904f54e8e1fca09bb65b1ec56f6cf2 https://www.encodeproject.org/files/ENCFF824HYC/@@download/ENCFF824HYC.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF879HCW bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 2 ENCFF017YFK, ENCFF692CCY, ENCFF956QBZ 5733069 ENCODE Processing Pipeline 76186825d37383865e921606496f6b6b https://www.encodeproject.org/files/ENCFF879HCW/@@download/ENCFF879HCW.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF452APP bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF302UOS, ENCFF592WAL, ENCFF901CND 7232348 ENCODE Processing Pipeline d8e765c46ac02fdee078d67da3163340 https://www.encodeproject.org/files/ENCFF452APP/@@download/ENCFF452APP.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF440OBY bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509RNF, ENCFF545DZO 4474802 ENCODE Processing Pipeline 3a3df51f9159bd917167447c0f6804b9 https://www.encodeproject.org/files/ENCFF440OBY/@@download/ENCFF440OBY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF022XIX bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF295XEM, ENCFF321UJV 6385906 ENCODE Processing Pipeline 408cc21c088095523b2496686055c974 https://www.encodeproject.org/files/ENCFF022XIX/@@download/ENCFF022XIX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF436DJC bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF515BLD 5199549 ENCODE Processing Pipeline 8f0a59206a2ac5618bb18337dfae2e7b https://www.encodeproject.org/files/ENCFF436DJC/@@download/ENCFF436DJC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF677XOS bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF165PBN, ENCFF705NOL, ENCFF978OOP 7204705 ENCODE Processing Pipeline 614d40655601b670b3d7550d1f041a7f https://www.encodeproject.org/files/ENCFF677XOS/@@download/ENCFF677XOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF837BDB bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 3858506 ENCODE Processing Pipeline 9daa2ed65158062bc55f643142b2d1bc https://www.encodeproject.org/files/ENCFF837BDB/@@download/ENCFF837BDB.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF443OXB bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 4310832 ENCODE Processing Pipeline a765467f07d8ac9c4e8183b883573cd7 https://www.encodeproject.org/files/ENCFF443OXB/@@download/ENCFF443OXB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF371MFR bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF749FQP 5585027 ENCODE Processing Pipeline bce3f2a863bb75de6f0b4b62d6677066 https://www.encodeproject.org/files/ENCFF371MFR/@@download/ENCFF371MFR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF397JOR bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF581OIB 5439352 ENCODE Processing Pipeline 0a867320804a243e5690f3226ee3ba8c https://www.encodeproject.org/files/ENCFF397JOR/@@download/ENCFF397JOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF330USX bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF005ZIF, ENCFF092AFJ 4661677 ENCODE Processing Pipeline c61287a804e07db675245f5fe75c64e5 https://www.encodeproject.org/files/ENCFF330USX/@@download/ENCFF330USX.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF592OPP bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF064JKD, ENCFF991UTU 5999715 ENCODE Processing Pipeline a15f38fb65d200a33fec2d4c281babc9 https://www.encodeproject.org/files/ENCFF592OPP/@@download/ENCFF592OPP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF012GOG bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF023GMN, ENCFF364YRB 3694904 ENCODE Processing Pipeline 6b4da5dee3c34bbed24a83628e774d40 https://www.encodeproject.org/files/ENCFF012GOG/@@download/ENCFF012GOG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF434TLG bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134LQW, ENCFF790IAM 4875322 ENCODE Processing Pipeline cbc2135234f89eb5e48555ed922ad0ff https://www.encodeproject.org/files/ENCFF434TLG/@@download/ENCFF434TLG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF211PND bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 3133805 ENCODE Processing Pipeline 7b3c014da2fb8c5e41950d2bd25f182f https://www.encodeproject.org/files/ENCFF211PND/@@download/ENCFF211PND.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF025EPQ bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF654EHF, ENCFF807CUF, ENCFF910AAQ 6294877 ENCODE Processing Pipeline 6443909ca96461f1eea1cae41e00b2dc https://www.encodeproject.org/files/ENCFF025EPQ/@@download/ENCFF025EPQ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF853ZNE bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF069OPS, ENCFF654EHF, ENCFF807CUF 6487660 ENCODE Processing Pipeline 1b89d3e45d2d80750516edc45ed84b43 https://www.encodeproject.org/files/ENCFF853ZNE/@@download/ENCFF853ZNE.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF003GWJ bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF802ETH, ENCFF991UTU 5637380 ENCODE Processing Pipeline 3c61c90619cf338818f7c6c1ae745df7 https://www.encodeproject.org/files/ENCFF003GWJ/@@download/ENCFF003GWJ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF955CAT bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 2 ENCFF640TLM, ENCFF991UTU 5885283 ENCODE Processing Pipeline f9b49f59d2a5715f533d621c7174e080 https://www.encodeproject.org/files/ENCFF955CAT/@@download/ENCFF955CAT.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF972ILN bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF293WLB, ENCFF359TIO 5187445 ENCODE Processing Pipeline 57a4c44881b7a7f7237879868d6fcf42 https://www.encodeproject.org/files/ENCFF972ILN/@@download/ENCFF972ILN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF721XMZ bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 2 ENCFF186KYZ, ENCFF876ZSM 4478670 ENCODE Processing Pipeline bc76f2eab44b0aa0ed65b9105e5c573a https://www.encodeproject.org/files/ENCFF721XMZ/@@download/ENCFF721XMZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF922PHV bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 2 ENCFF341WGX, ENCFF941TZZ 6969742 ENCODE Processing Pipeline 6700d7b2ae8dec2c164fcf17c1a6a239 https://www.encodeproject.org/files/ENCFF922PHV/@@download/ENCFF922PHV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF571PKW bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF299MPV, ENCFF807CUF 6654694 ENCODE Processing Pipeline 4f4cba258c42983c2a149b343143af6c https://www.encodeproject.org/files/ENCFF571PKW/@@download/ENCFF571PKW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF772MXQ bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF370NFJ, ENCFF596HMK 5174309 ENCODE Processing Pipeline f31d5c2f414ed1d0e8227375ba4456a0 https://www.encodeproject.org/files/ENCFF772MXQ/@@download/ENCFF772MXQ.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF088ETE bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 2 ENCFF807CUF, ENCFF924XUU 5730112 ENCODE Processing Pipeline 69f10978867227b1778fdc35f1339bfd https://www.encodeproject.org/files/ENCFF088ETE/@@download/ENCFF088ETE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF963HHX bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 2 ENCFF297FMS, ENCFF807CUF 4923460 ENCODE Processing Pipeline 1e73c81529035da9f85ec2cf5613081b https://www.encodeproject.org/files/ENCFF963HHX/@@download/ENCFF963HHX.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF542JSY bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4165438 ENCODE Processing Pipeline ba3e8d02fb54cd34157a8089726aaa96 https://www.encodeproject.org/files/ENCFF542JSY/@@download/ENCFF542JSY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF907QKO bed narrowPeak peaks ENCSR636YLV ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF513CSC 4316930 ENCODE Processing Pipeline a4549a0cc1168a9c397a432250623783 https://www.encodeproject.org/files/ENCFF907QKO/@@download/ENCFF907QKO.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF810FLM bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF520IDM, ENCFF654EHF, ENCFF991UTU 6491970 ENCODE Processing Pipeline e3e312be3c9440fd1362b9698a943da2 https://www.encodeproject.org/files/ENCFF810FLM/@@download/ENCFF810FLM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF045GWC bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF432HQR 5893336 ENCODE Processing Pipeline bcfd36c5f953f44313654a6c3757e8b7 https://www.encodeproject.org/files/ENCFF045GWC/@@download/ENCFF045GWC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF373SRH bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 2 ENCFF150BNL, ENCFF871NUZ 5660379 ENCODE Processing Pipeline 569017cf25d35c0cfea55ceb5e9876cd https://www.encodeproject.org/files/ENCFF373SRH/@@download/ENCFF373SRH.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF047WBC bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF379HIU 5314400 ENCODE Processing Pipeline 37fd80ee2f41d36cd1939bf965d71815 https://www.encodeproject.org/files/ENCFF047WBC/@@download/ENCFF047WBC.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF044ASF bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF837JGZ 5883861 ENCODE Processing Pipeline 72c233681b4110fc7b0b05c604de3f7f https://www.encodeproject.org/files/ENCFF044ASF/@@download/ENCFF044ASF.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF019DFB bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 5488272 ENCODE Processing Pipeline 664ac255bd20196d280131b4d8a991c6 https://www.encodeproject.org/files/ENCFF019DFB/@@download/ENCFF019DFB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF726OZS bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 4681440 ENCODE Processing Pipeline 1dd1aa8e753206f395d457c2e4a927cc https://www.encodeproject.org/files/ENCFF726OZS/@@download/ENCFF726OZS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF963HCJ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 2 ENCFF566BBU, ENCFF592WAL, ENCFF901CND 7164736 ENCODE Processing Pipeline 039c388c95fdaa3efb9c4ed44ccee9df https://www.encodeproject.org/files/ENCFF963HCJ/@@download/ENCFF963HCJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF239HMM bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF475BTD, ENCFF747YRH 6521714 ENCODE Processing Pipeline 3fbc012afa2e16179811ce82e7d23b19 https://www.encodeproject.org/files/ENCFF239HMM/@@download/ENCFF239HMM.bed.gz hg19 released experiment not submitted to GEO ENCFF005FQK bed narrowPeak peaks ENCSR434XLP ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 2 ENCFF304JLC, ENCFF940ZHR 6751907 ENCODE Processing Pipeline 75e5a27a47da2d88059b6c23b5480bc1 https://www.encodeproject.org/files/ENCFF005FQK/@@download/ENCFF005FQK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF425OPL bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF954WQD 4584722 ENCODE Processing Pipeline cdd2bae7c6ee87d711d7a5a52062b814 https://www.encodeproject.org/files/ENCFF425OPL/@@download/ENCFF425OPL.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF662CIT bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 5665796 ENCODE Processing Pipeline 734bfef27a0bf430b9620e9a05ddb2b0 https://www.encodeproject.org/files/ENCFF662CIT/@@download/ENCFF662CIT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF924RTU bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF895FUF 5165733 ENCODE Processing Pipeline cc7d2a5f310991fd7605497aa85aba1e https://www.encodeproject.org/files/ENCFF924RTU/@@download/ENCFF924RTU.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF604XWK bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 6853798 ENCODE Processing Pipeline 0ce20453e7cc72bebc28e6ce7dddc3cf https://www.encodeproject.org/files/ENCFF604XWK/@@download/ENCFF604XWK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF925VOV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 6133457 ENCODE Processing Pipeline 225a6eb7aa177f322f26910ce442b90d https://www.encodeproject.org/files/ENCFF925VOV/@@download/ENCFF925VOV.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF230ONV bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 2 ENCFF017WNE, ENCFF529BVI, ENCFF772FBN 6993974 ENCODE Processing Pipeline 467a0f297fe89e56593980a3c5bf98a2 https://www.encodeproject.org/files/ENCFF230ONV/@@download/ENCFF230ONV.bed.gz hg19 released mild to moderate bottlenecking ENCFF203SUN bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 6769212 ENCODE Processing Pipeline 23d5725b84132909e80e5661417b18a3 https://www.encodeproject.org/files/ENCFF203SUN/@@download/ENCFF203SUN.bed.gz hg19 released low read depth ENCFF502ZML bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF195GBJ, ENCFF599MVB 4856877 ENCODE Processing Pipeline 87d18835bee9c0737f2185185f2ebbcf https://www.encodeproject.org/files/ENCFF502ZML/@@download/ENCFF502ZML.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF118YQO bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 6858994 ENCODE Processing Pipeline 7763099fa0d7ef87e37db04101e1b836 https://www.encodeproject.org/files/ENCFF118YQO/@@download/ENCFF118YQO.bed.gz hg19 released low read depth ENCFF050ZNZ bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 2 ENCFF049MPQ, ENCFF516LSB 6303804 ENCODE Processing Pipeline cde6af2b9b910a015bb46dc56ffd38d8 https://www.encodeproject.org/files/ENCFF050ZNZ/@@download/ENCFF050ZNZ.bed.gz hg19 released ENCFF562WIC bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 2 ENCFF287SKW, ENCFF758USJ 6487120 ENCODE Processing Pipeline 8dbfd846077b291aad653f4a95112cea https://www.encodeproject.org/files/ENCFF562WIC/@@download/ENCFF562WIC.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF882PND bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF502XOF, ENCFF592WAL 6275090 ENCODE Processing Pipeline c675cdb91db82617fa4ea75af504c153 https://www.encodeproject.org/files/ENCFF882PND/@@download/ENCFF882PND.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF127XOZ bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 5234413 ENCODE Processing Pipeline 2540b3700f187069edc19cf750478f22 https://www.encodeproject.org/files/ENCFF127XOZ/@@download/ENCFF127XOZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF674AYU bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 2 ENCFF822QTV, ENCFF999EQI 6306629 ENCODE Processing Pipeline 9a7d70950ca0f45844d3e13316b55692 https://www.encodeproject.org/files/ENCFF674AYU/@@download/ENCFF674AYU.bed.gz hg19 released antibody characterized with exemption ENCFF258KBF bed narrowPeak peaks ENCSR699BEK ChIP-seq UBERON:0007610 tibial artery tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF550SXD, ENCFF827MXQ 6248779 ENCODE Processing Pipeline be3428ea336cd60cd52bdc1fcff809ef https://www.encodeproject.org/files/ENCFF258KBF/@@download/ENCFF258KBF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF214FTU bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF499RKL, ENCFF956QBZ 4725461 ENCODE Processing Pipeline 32ae8d996cc5d1ecfae20a133d10971d https://www.encodeproject.org/files/ENCFF214FTU/@@download/ENCFF214FTU.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF132GYY bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 2 ENCFF956QBZ, ENCFF964YHS 4917436 ENCODE Processing Pipeline e365c57b89ba2e09737b2f7fd3299a31 https://www.encodeproject.org/files/ENCFF132GYY/@@download/ENCFF132GYY.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF666TVL bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 6573285 ENCODE Processing Pipeline da592a6f1324752fe87aee24fb491ba2 https://www.encodeproject.org/files/ENCFF666TVL/@@download/ENCFF666TVL.bed.gz hg19 released ENCFF875DOP bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF825DAK 6703556 ENCODE Processing Pipeline cab2bab5d42e0c93b0d61ce1f20083b5 https://www.encodeproject.org/files/ENCFF875DOP/@@download/ENCFF875DOP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF414BJO bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 2 ENCFF242CDB, ENCFF956QBZ 4977831 ENCODE Processing Pipeline 7c7077dee92bb8fba520d21de724eb86 https://www.encodeproject.org/files/ENCFF414BJO/@@download/ENCFF414BJO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF605AVV bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF514ADB, ENCFF731XOB, ENCFF834FWS 7152526 ENCODE Processing Pipeline c1fc0f72e5501ac7de85470d718bf3ed https://www.encodeproject.org/files/ENCFF605AVV/@@download/ENCFF605AVV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF774PLL bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF575WLE, ENCFF924UWH 6422575 ENCODE Processing Pipeline 6e1f6dd270aa7c4968e267c53a1eee3a https://www.encodeproject.org/files/ENCFF774PLL/@@download/ENCFF774PLL.bed.gz hg19 released experiment not submitted to GEO ENCFF139HGF bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 5524228 ENCODE Processing Pipeline 2aae8c1ccd397c34a1d4ed546f80f4b6 https://www.encodeproject.org/files/ENCFF139HGF/@@download/ENCFF139HGF.bed.gz hg19 released low read depth ENCFF648RRL bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 6467947 ENCODE Processing Pipeline 4435ee4a7fe139f08413b2140a3f41ff https://www.encodeproject.org/files/ENCFF648RRL/@@download/ENCFF648RRL.bed.gz hg19 released ENCFF168RYI bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 2 ENCFF199MDR, ENCFF787RYL, ENCFF991WDT 5497898 ENCODE Processing Pipeline 63382d019e0fde4f49a5993034e60f45 https://www.encodeproject.org/files/ENCFF168RYI/@@download/ENCFF168RYI.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF850ENR bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 6735588 ENCODE Processing Pipeline f1a7d7acf30f8769e3ec52429b8541d6 https://www.encodeproject.org/files/ENCFF850ENR/@@download/ENCFF850ENR.bed.gz hg19 released ENCFF462BHV bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 2 ENCFF014NCD, ENCFF182WHU 6675307 ENCODE Processing Pipeline 3f5f2429508539a08ee1c864413580e0 https://www.encodeproject.org/files/ENCFF462BHV/@@download/ENCFF462BHV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF366ELK bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF128DCK, ENCFF578XGS 5210735 ENCODE Processing Pipeline 1ee7a77fbc3276d097af1ec01e875a62 https://www.encodeproject.org/files/ENCFF366ELK/@@download/ENCFF366ELK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF484BXC bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF204OVV 5604294 ENCODE Processing Pipeline 42821014acba8842b34c8e4e74196e06 https://www.encodeproject.org/files/ENCFF484BXC/@@download/ENCFF484BXC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF105NHW bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF240KUX, ENCFF556SYP, ENCFF564TQN 6851081 ENCODE Processing Pipeline 3e1274b21839788d9b813acfac2a5dfe https://www.encodeproject.org/files/ENCFF105NHW/@@download/ENCFF105NHW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF002NNQ bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 5669054 ENCODE Processing Pipeline f6cd593476efa8c5c75daf455dae72c3 https://www.encodeproject.org/files/ENCFF002NNQ/@@download/ENCFF002NNQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF704TBE bed narrowPeak peaks ENCSR697YIN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2017-02-08 ENCODE 2 ENCFF365JBZ, ENCFF390SST 6296385 ENCODE Processing Pipeline 83f933092541f32cefad10061ea61bad https://www.encodeproject.org/files/ENCFF704TBE/@@download/ENCFF704TBE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF692CDD bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF933BWH 6267140 ENCODE Processing Pipeline 41225965f4413d81312d7cca6e546e21 https://www.encodeproject.org/files/ENCFF692CDD/@@download/ENCFF692CDD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF685WLQ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 2 ENCFF592WAL, ENCFF949DKV 5975222 ENCODE Processing Pipeline e1a4eb0ab7cac001a530003ac856e94e https://www.encodeproject.org/files/ENCFF685WLQ/@@download/ENCFF685WLQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF380RMA bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 6789390 ENCODE Processing Pipeline 3e88a974bac6cd6198dc1f3be445c88e https://www.encodeproject.org/files/ENCFF380RMA/@@download/ENCFF380RMA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF437VMK bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 2 ENCFF226CEN, ENCFF999EQI 5534124 ENCODE Processing Pipeline 68dba4cda1e0af055867c5657413b4a2 https://www.encodeproject.org/files/ENCFF437VMK/@@download/ENCFF437VMK.bed.gz hg19 released borderline replicate concordance ENCFF539MLU bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 2 ENCFF289DJO, ENCFF815IAY 4349535 ENCODE Processing Pipeline 2a8915c9747200df2bcf044c32f91d18 https://www.encodeproject.org/files/ENCFF539MLU/@@download/ENCFF539MLU.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF040JIX bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 2 ENCFF049MPQ, ENCFF050NKD 6678531 ENCODE Processing Pipeline 1eceb155397a8fdbb45fbee0b4bbd89e https://www.encodeproject.org/files/ENCFF040JIX/@@download/ENCFF040JIX.bed.gz hg19 released ENCFF826ULZ bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 2 ENCFF366VQS, ENCFF801WHL, ENCFF923EBC 7198175 ENCODE Processing Pipeline 4c617dbf8ab0957b2b8643b5502c09f3 https://www.encodeproject.org/files/ENCFF826ULZ/@@download/ENCFF826ULZ.bed.gz hg19 released NTR biosample ENCFF276RMO bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 2 ENCFF502IBE, ENCFF618SCO 6744690 ENCODE Processing Pipeline f0b3cb8c1493d48a88cf0b30b72a08ff https://www.encodeproject.org/files/ENCFF276RMO/@@download/ENCFF276RMO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF465IOZ bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF113PTE, ENCFF366UNV, ENCFF761NWZ 7050446 ENCODE Processing Pipeline b37e92be4f3a447e40d01464b356c013 https://www.encodeproject.org/files/ENCFF465IOZ/@@download/ENCFF465IOZ.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF593TJL bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 2 ENCFF172XZA, ENCFF317BEW, ENCFF843IXX 6528837 ENCODE Processing Pipeline 47a51033c2938c7e1006eadcc3726280 https://www.encodeproject.org/files/ENCFF593TJL/@@download/ENCFF593TJL.bed.gz hg19 released mild to moderate bottlenecking ENCFF610HTV bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF741WIH, ENCFF823USR 6909678 ENCODE Processing Pipeline e76170fcf20e7c8766dd4509b4c36b58 https://www.encodeproject.org/files/ENCFF610HTV/@@download/ENCFF610HTV.bed.gz hg19 released mild to moderate bottlenecking ENCFF128OKK bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 2 ENCFF239POZ, ENCFF609FMU 6377846 ENCODE Processing Pipeline 02e42c7712ffde272e651acb9b49a7ab https://www.encodeproject.org/files/ENCFF128OKK/@@download/ENCFF128OKK.bed.gz hg19 released experiment not submitted to GEO ENCFF978HRR bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF447KVS, ENCFF654ZRK, ENCFF823USR 6539705 ENCODE Processing Pipeline 05d47f16d247a0449ba74ddc1fa67e1b https://www.encodeproject.org/files/ENCFF978HRR/@@download/ENCFF978HRR.bed.gz hg19 released ENCFF253PLF bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 6719475 ENCODE Processing Pipeline f3894190ca5645019fbfae164354c932 https://www.encodeproject.org/files/ENCFF253PLF/@@download/ENCFF253PLF.bed.gz hg19 released borderline replicate concordance ENCFF859ZGV bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 2 ENCFF125ZRD, ENCFF172XZA, ENCFF843IXX 6777667 ENCODE Processing Pipeline 88c7ef5588f5f47b0933c6942f962542 https://www.encodeproject.org/files/ENCFF859ZGV/@@download/ENCFF859ZGV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF886RMX bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 2 ENCFF329ZGR, ENCFF592WAL 5978243 ENCODE Processing Pipeline 09ae9d17e078b91aaf356d04a97ab953 https://www.encodeproject.org/files/ENCFF886RMX/@@download/ENCFF886RMX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF865UXS bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 2 ENCFF113PTE, ENCFF312LTL, ENCFF761NWZ 7108274 ENCODE Processing Pipeline 20668413d6068304e16ec0c1b2f14427 https://www.encodeproject.org/files/ENCFF865UXS/@@download/ENCFF865UXS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF617PCO bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 2 ENCFF172XZA, ENCFF370OOM, ENCFF843IXX 6969558 ENCODE Processing Pipeline 168127b18f6de59061bd95ebc54d50f2 https://www.encodeproject.org/files/ENCFF617PCO/@@download/ENCFF617PCO.bed.gz hg19 released ENCFF531FOV bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 2 ENCFF194UHW, ENCFF592WAL 5986594 ENCODE Processing Pipeline 54a5acef1203551a9692d93b280d8fca https://www.encodeproject.org/files/ENCFF531FOV/@@download/ENCFF531FOV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF367KYN bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 6402393 ENCODE Processing Pipeline 4b7df7883c2538296b947e03cbc3ab8d https://www.encodeproject.org/files/ENCFF367KYN/@@download/ENCFF367KYN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF977TIL bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF384TCX, ENCFF540UGI, ENCFF854RGJ 7286155 ENCODE Processing Pipeline 25404fa0dc11a561d7e6993810a6909b https://www.encodeproject.org/files/ENCFF977TIL/@@download/ENCFF977TIL.bed.gz hg19 released mild to moderate bottlenecking ENCFF939NVJ bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 2 ENCFF163GGL, ENCFF856NHW, ENCFF959SRT 7380980 ENCODE Processing Pipeline 430d90feeb8cae901aa113f765b5c2f2 https://www.encodeproject.org/files/ENCFF939NVJ/@@download/ENCFF939NVJ.bed.gz hg19 released NTR biosample ENCFF510TYC bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF517YSM, ENCFF787RYL, ENCFF991WDT 5371872 ENCODE Processing Pipeline 594c0369b32afa4408986dc95524133a https://www.encodeproject.org/files/ENCFF510TYC/@@download/ENCFF510TYC.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF925ZGX bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF086LJZ, ENCFF943IIV, ENCFF991WDT 4985334 ENCODE Processing Pipeline 977767272dab7b9267fce5f771334049 https://www.encodeproject.org/files/ENCFF925ZGX/@@download/ENCFF925ZGX.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF014ZNK bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 7084035 ENCODE Processing Pipeline 77ff4cb4f03880759fbea7159b5e1b9e https://www.encodeproject.org/files/ENCFF014ZNK/@@download/ENCFF014ZNK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF789HHG bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 4774722 ENCODE Processing Pipeline 2b980e8a647d156579335201a39ef984 https://www.encodeproject.org/files/ENCFF789HHG/@@download/ENCFF789HHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF513RYM bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 7019864 ENCODE Processing Pipeline 8a4ba87bbb665cd7592881e04722644b https://www.encodeproject.org/files/ENCFF513RYM/@@download/ENCFF513RYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF855RKW bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF950ZBS 6488095 ENCODE Processing Pipeline d4dfe31150b5ecc1afaad5c0b16c4845 https://www.encodeproject.org/files/ENCFF855RKW/@@download/ENCFF855RKW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF150YMV bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 2 ENCFF592WAL, ENCFF787OQV 6855199 ENCODE Processing Pipeline 299024ce5c68aeb309d8c186b174ff61 https://www.encodeproject.org/files/ENCFF150YMV/@@download/ENCFF150YMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF260RNL bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 6032960 ENCODE Processing Pipeline f8148af9c2ae9084fb7a592c87363903 https://www.encodeproject.org/files/ENCFF260RNL/@@download/ENCFF260RNL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF989VGU bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF011BPU, ENCFF096KAF 6791978 ENCODE Processing Pipeline f7c26fde17309370db830462d1f2532f https://www.encodeproject.org/files/ENCFF989VGU/@@download/ENCFF989VGU.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF138HSD bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF408VAT, ENCFF447KVS, ENCFF823USR 7062054 ENCODE Processing Pipeline 630988f78424aeb9b95a283138eab75c https://www.encodeproject.org/files/ENCFF138HSD/@@download/ENCFF138HSD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF162YHD bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 6911168 ENCODE Processing Pipeline 5e8431bc30b30d1ab3f1b30703317636 https://www.encodeproject.org/files/ENCFF162YHD/@@download/ENCFF162YHD.bed.gz hg19 released missing genetic modification characterization ENCFF253NDQ bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF663MHL 5388530 ENCODE Processing Pipeline 620c5eaf1a861d712d3399bc8cbe4dd1 https://www.encodeproject.org/files/ENCFF253NDQ/@@download/ENCFF253NDQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF550URY bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF881DRR 4685837 ENCODE Processing Pipeline b560ca5254c568663b11e62a65ab9d16 https://www.encodeproject.org/files/ENCFF550URY/@@download/ENCFF550URY.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916ARR bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 2 ENCFF303UMK, ENCFF999EQI 6109059 ENCODE Processing Pipeline 6ffc12ddb7cfa214844744dceb9a59c0 https://www.encodeproject.org/files/ENCFF916ARR/@@download/ENCFF916ARR.bed.gz hg19 released borderline replicate concordance ENCFF001XPM bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHS 768874 John Stamatoyannopoulos, UW db6a022f65cca2f4255919a9a665af29 https://www.encodeproject.org/files/ENCFF001XPM/@@download/ENCFF001XPM.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF559IXF bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF412PHP, ENCFF892TNJ 3921477 ENCODE Processing Pipeline d2f733fe91eb768e2544200a7b2f1c49 https://www.encodeproject.org/files/ENCFF559IXF/@@download/ENCFF559IXF.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF938OWG bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 2 ENCFF008NUZ, ENCFF447KVS, ENCFF823USR 6973358 ENCODE Processing Pipeline 7fb325e570a491b88cfd776e14a00fa7 https://www.encodeproject.org/files/ENCFF938OWG/@@download/ENCFF938OWG.bed.gz hg19 released ENCFF721DKV bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 5331822 ENCODE Processing Pipeline 54d16af622c98713d139299498e6adb2 https://www.encodeproject.org/files/ENCFF721DKV/@@download/ENCFF721DKV.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF107SGI bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 4674325 ENCODE Processing Pipeline 418758f943c545f62ba0589e070eb71f https://www.encodeproject.org/files/ENCFF107SGI/@@download/ENCFF107SGI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF028UBX bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 2 ENCFF288CMG, ENCFF529BVI, ENCFF772FBN 6983689 ENCODE Processing Pipeline 11f1057a378148b3658bc79e67df2436 https://www.encodeproject.org/files/ENCFF028UBX/@@download/ENCFF028UBX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF934HUV bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 2 ENCFF447KVS, ENCFF628LZV, ENCFF823USR 6849042 ENCODE Processing Pipeline 7f5463b70d7a1a1e597de7476a249f79 https://www.encodeproject.org/files/ENCFF934HUV/@@download/ENCFF934HUV.bed.gz hg19 released file validation error mismatched file status ENCFF948KJG bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 2 ENCFF049AQB, ENCFF529BVI, ENCFF772FBN 7040849 ENCODE Processing Pipeline f888673eb04bb67b9a39cdfcb5bc7dab https://www.encodeproject.org/files/ENCFF948KJG/@@download/ENCFF948KJG.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF057RCM bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF078DNG 5951493 ENCODE Processing Pipeline a528456c8cd4373a6d1e527b8e668908 https://www.encodeproject.org/files/ENCFF057RCM/@@download/ENCFF057RCM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF844VMC bed narrowPeak peaks ENCSR064LJN ChIP-seq EFO:0001086 A549 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF771VVI 6007450 ENCODE Processing Pipeline 7fdebc2a00b17375d72c9ac64ab99956 https://www.encodeproject.org/files/ENCFF844VMC/@@download/ENCFF844VMC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF459AGI bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 2 ENCFF172XZA, ENCFF643ZMZ, ENCFF843IXX 6911516 ENCODE Processing Pipeline 1a845ed94bfe8693ff218e902f99088a https://www.encodeproject.org/files/ENCFF459AGI/@@download/ENCFF459AGI.bed.gz hg19 released antibody characterized with exemption ENCFF567MYL bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF495BAQ 6613574 ENCODE Processing Pipeline 5e2e7c9dc4d2243da1d551e253fc9973 https://www.encodeproject.org/files/ENCFF567MYL/@@download/ENCFF567MYL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF455HXY bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 2 ENCFF736UXD, ENCFF901CND 7179191 ENCODE Processing Pipeline 6037a0d0b1073ae8d233714b1521e9be https://www.encodeproject.org/files/ENCFF455HXY/@@download/ENCFF455HXY.bed.gz hg19 released mild to moderate bottlenecking ENCFF267RGU bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 7085717 ENCODE Processing Pipeline 86e12d6a6279d291ed62cc05f1c9411f https://www.encodeproject.org/files/ENCFF267RGU/@@download/ENCFF267RGU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF302KGG bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF608GXH, ENCFF999EQI 6513399 ENCODE Processing Pipeline 281d828127b433784466c4edb4023bdf https://www.encodeproject.org/files/ENCFF302KGG/@@download/ENCFF302KGG.bed.gz hg19 released antibody characterized with exemption ENCFF710KKZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 6525420 ENCODE Processing Pipeline 8101449533063d4491dcd437c4d4400e https://www.encodeproject.org/files/ENCFF710KKZ/@@download/ENCFF710KKZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF890VHF bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 2 ENCFF049MPQ, ENCFF630HPE 6593313 ENCODE Processing Pipeline b92e64a443c81bb6279e6a299af35052 https://www.encodeproject.org/files/ENCFF890VHF/@@download/ENCFF890VHF.bed.gz hg19 released ENCFF975UYT bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 6769806 ENCODE Processing Pipeline 1d5437af2fa6db05277da419a4a3e02d https://www.encodeproject.org/files/ENCFF975UYT/@@download/ENCFF975UYT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF830YCS bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 6824938 ENCODE Processing Pipeline 1f26fecef2e02649484455fc3cc1772f https://www.encodeproject.org/files/ENCFF830YCS/@@download/ENCFF830YCS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF494SRY bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF955NYD 6674264 ENCODE Processing Pipeline 505cee6a36e8bd3c4031c86ccbe29baf https://www.encodeproject.org/files/ENCFF494SRY/@@download/ENCFF494SRY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF367LDH bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 2 ENCFF536BYQ, ENCFF812MYK, ENCFF831TJC 7180979 ENCODE Processing Pipeline 16b6624c22589f5ed5dca36bf77359dc https://www.encodeproject.org/files/ENCFF367LDH/@@download/ENCFF367LDH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF170DYF bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF217UCE, ENCFF596ZQI, ENCFF825CNQ 5840669 ENCODE Processing Pipeline fc3e3f597db96ebbb7d48ac3f240beb7 https://www.encodeproject.org/files/ENCFF170DYF/@@download/ENCFF170DYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF709QKK bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6002614 ENCODE Processing Pipeline 6dae0589750cc96542c538f115984196 https://www.encodeproject.org/files/ENCFF709QKK/@@download/ENCFF709QKK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF728RVS bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF785URO 6168711 ENCODE Processing Pipeline 535c735b1671fa12d4df693df1e88cf9 https://www.encodeproject.org/files/ENCFF728RVS/@@download/ENCFF728RVS.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF359FUJ bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 2 ENCFF592WAL, ENCFF772RMA 7006203 ENCODE Processing Pipeline cce3be3f04bf615b9a5f510bee1382df https://www.encodeproject.org/files/ENCFF359FUJ/@@download/ENCFF359FUJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF649FUD bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 2 ENCFF529BVI, ENCFF554EGF, ENCFF772FBN 6769208 ENCODE Processing Pipeline 31feb33dee426db3890aca3cb4be62c0 https://www.encodeproject.org/files/ENCFF649FUD/@@download/ENCFF649FUD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF640MOW bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF137JPI, ENCFF462LKA 5437056 ENCODE Processing Pipeline 71022d9ddfec1b37ca1f962b1e042cc0 https://www.encodeproject.org/files/ENCFF640MOW/@@download/ENCFF640MOW.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF232NKH bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6426584 ENCODE Processing Pipeline 51d71096ec3d9a23f46ef7cdf33298c3 https://www.encodeproject.org/files/ENCFF232NKH/@@download/ENCFF232NKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF666VFP bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF093CYD, ENCFF583FAG 6571503 ENCODE Processing Pipeline 6573094f2ef543e6777f4d0454c925b9 https://www.encodeproject.org/files/ENCFF666VFP/@@download/ENCFF666VFP.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF147SMY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5085112 ENCODE Processing Pipeline 204e1eba5fef56936b074b620d7544ef https://www.encodeproject.org/files/ENCFF147SMY/@@download/ENCFF147SMY.bed.gz hg19 released low read length ENCFF483GPY bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF823OXL 5288651 ENCODE Processing Pipeline 7a518edfff897def63a39821aed21c96 https://www.encodeproject.org/files/ENCFF483GPY/@@download/ENCFF483GPY.bed.gz hg19 archived low read length ENCFF995GUT bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF049MPQ, ENCFF520SIO 6004443 ENCODE Processing Pipeline 67e2a4a9a62cb8a9694eb955ce810215 https://www.encodeproject.org/files/ENCFF995GUT/@@download/ENCFF995GUT.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF736LBL bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 2 ENCFF087GJL, ENCFF092HKY, ENCFF687EVJ 6013482 ENCODE Processing Pipeline e90c186ea3598929d636d4b1f7b5c3eb https://www.encodeproject.org/files/ENCFF736LBL/@@download/ENCFF736LBL.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF035WWJ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 6996638 ENCODE Processing Pipeline 1e16fc976551c3b160a13c72af02467e https://www.encodeproject.org/files/ENCFF035WWJ/@@download/ENCFF035WWJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF258LFF bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 2 ENCFF567WDW, ENCFF606POP, ENCFF618RNL 6554587 ENCODE Processing Pipeline c1dac2f9954ad5604b175a3aa377852c https://www.encodeproject.org/files/ENCFF258LFF/@@download/ENCFF258LFF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF307JUJ bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 6500043 ENCODE Processing Pipeline 5c65bc9a01516d7a56cae72f2baf034a https://www.encodeproject.org/files/ENCFF307JUJ/@@download/ENCFF307JUJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF193LNB bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF049MPQ, ENCFF934FGG 6498031 ENCODE Processing Pipeline 11d21fe06c3882b875d79e12c9835779 https://www.encodeproject.org/files/ENCFF193LNB/@@download/ENCFF193LNB.bed.gz hg19 released ENCFF960PAB bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6662647 ENCODE Processing Pipeline 0eac0334544d617f38a707c49d66c71f https://www.encodeproject.org/files/ENCFF960PAB/@@download/ENCFF960PAB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF946SUD bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF909JKW 6796580 ENCODE Processing Pipeline 4e5ad619e5c5250523ad54e9782f723d https://www.encodeproject.org/files/ENCFF946SUD/@@download/ENCFF946SUD.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF634YJK bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 6662684 ENCODE Processing Pipeline e54b64c6a6acb14134508fc5c8ce4087 https://www.encodeproject.org/files/ENCFF634YJK/@@download/ENCFF634YJK.bed.gz hg19 released low read depth ENCFF848NAZ bed narrowPeak peaks ENCSR294JWV ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 2 ENCFF305PAV, ENCFF321TUP, ENCFF806YIH 6290112 ENCODE Processing Pipeline 3b3f4f6bc05b533f8f3bcb305ee2cf47 https://www.encodeproject.org/files/ENCFF848NAZ/@@download/ENCFF848NAZ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF958NNA bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF598OEP, ENCFF980CFV 6899333 ENCODE Processing Pipeline 1bfb25fd393078f3edb6175f8b1b89c0 https://www.encodeproject.org/files/ENCFF958NNA/@@download/ENCFF958NNA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF852HEY bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 2 ENCFF049MPQ, ENCFF969ZBO 6149229 ENCODE Processing Pipeline a4c8f4d0da2876d7510bfc5873fd3e84 https://www.encodeproject.org/files/ENCFF852HEY/@@download/ENCFF852HEY.bed.gz hg19 released ENCFF719LYG bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF136YSL, ENCFF654EHF, ENCFF991UTU 6334036 ENCODE Processing Pipeline 5b9211da3befebf088139f31ac6a136a https://www.encodeproject.org/files/ENCFF719LYG/@@download/ENCFF719LYG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF862YTD bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 2 ENCFF489HCA, ENCFF654EHF, ENCFF991UTU 6509263 ENCODE Processing Pipeline d487a642ab6faabf4426c5f42cb492b3 https://www.encodeproject.org/files/ENCFF862YTD/@@download/ENCFF862YTD.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF905UQM bed narrowPeak peaks ENCSR928API ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX1-human DNA False 2017-11-14 ENCODE 2 ENCFF343GJG, ENCFF449NNE, ENCFF999EQI 6940031 ENCODE Processing Pipeline c163f38247f58fd7e4cb93d11e470e77 https://www.encodeproject.org/files/ENCFF905UQM/@@download/ENCFF905UQM.bed.gz hg19 released experiment not submitted to GEO ENCFF799ZCH bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF042EJM, ENCFF043GGB, ENCFF705RUU 4849098 ENCODE Processing Pipeline e8902ac67406ab63ce04552e64737df6 https://www.encodeproject.org/files/ENCFF799ZCH/@@download/ENCFF799ZCH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF087DBS bed narrowPeak peaks ENCSR277OOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ZC3H11A-human DNA False 2014-07-07 ENCODE 2 ENCFF198LHP, ENCFF321TUP, ENCFF806YIH 6182514 ENCODE Processing Pipeline 62aaafec07ac3455da4816526b90bfdb https://www.encodeproject.org/files/ENCFF087DBS/@@download/ENCFF087DBS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF513RYS bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 6709320 ENCODE Processing Pipeline f9c73cee15733bf6764b14d01bb16516 https://www.encodeproject.org/files/ENCFF513RYS/@@download/ENCFF513RYS.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF830CSU bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF593DEU, ENCFF980CFV 7030738 ENCODE Processing Pipeline e5860c326800a5dd895b7b6fcefa0822 https://www.encodeproject.org/files/ENCFF830CSU/@@download/ENCFF830CSU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF996FCB bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 6072101 ENCODE Processing Pipeline 6a573d9edf0d948d5d9e9723b9b2c238 https://www.encodeproject.org/files/ENCFF996FCB/@@download/ENCFF996FCB.bed.gz hg19 released mild to moderate bottlenecking ENCFF967NOV bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF696KXY 5253133 ENCODE Processing Pipeline fce57668b13f325ec0a03199697d80bb https://www.encodeproject.org/files/ENCFF967NOV/@@download/ENCFF967NOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF527ONY bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5472017 ENCODE Processing Pipeline 42824a013f1513874aafba1837a83137 https://www.encodeproject.org/files/ENCFF527ONY/@@download/ENCFF527ONY.bed.gz hg19 released mild to moderate bottlenecking ENCFF789FWH bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF327BYF 5671340 ENCODE Processing Pipeline 69423bde704039a08639185373c99a15 https://www.encodeproject.org/files/ENCFF789FWH/@@download/ENCFF789FWH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF489KKG bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4843098 ENCODE Processing Pipeline 80c90deee256f00d680c32793f0ce768 https://www.encodeproject.org/files/ENCFF489KKG/@@download/ENCFF489KKG.bed.gz hg19 archived low read length, low read depth ENCFF401ZKP bed narrowPeak peaks ENCSR219NRT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF849ALO 4606728 ENCODE Processing Pipeline 6fe2713e4cc421da4f8e405aa90ad408 https://www.encodeproject.org/files/ENCFF401ZKP/@@download/ENCFF401ZKP.bed.gz hg19 released low read length, low read depth ENCFF562UJV bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6125895 ENCODE Processing Pipeline 4fe3ea1090463a5a9479a4052efef902 https://www.encodeproject.org/files/ENCFF562UJV/@@download/ENCFF562UJV.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF829KFC bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 6680008 ENCODE Processing Pipeline 9916a25b6b7c1363fbfb629df670f9c3 https://www.encodeproject.org/files/ENCFF829KFC/@@download/ENCFF829KFC.bed.gz hg19 released ENCFF850KMN bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF253RUM, ENCFF708VUG 6177706 ENCODE Processing Pipeline 8e73c1de339a2b522cce5399ebecbfad https://www.encodeproject.org/files/ENCFF850KMN/@@download/ENCFF850KMN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF268CZL bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF596CVC, ENCFF815IAY 5807811 ENCODE Processing Pipeline 7c1eed46b0949017e679dddb6d549375 https://www.encodeproject.org/files/ENCFF268CZL/@@download/ENCFF268CZL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF619TUA bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF860FLL 5105454 ENCODE Processing Pipeline ff2f7ce9a1d94163fe261f3fcffe81c4 https://www.encodeproject.org/files/ENCFF619TUA/@@download/ENCFF619TUA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF994IZJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 7191587 ENCODE Processing Pipeline 36d1b5a86c8378751f9dce955bef0765 https://www.encodeproject.org/files/ENCFF994IZJ/@@download/ENCFF994IZJ.bed.gz hg19 released ENCFF144BHZ bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4684240 ENCODE Processing Pipeline b039605dd3eb42480c302fbe7f343f62 https://www.encodeproject.org/files/ENCFF144BHZ/@@download/ENCFF144BHZ.bed.gz hg19 released low read length ENCFF555MVU bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF423SVA, ENCFF817NEK 4929047 ENCODE Processing Pipeline 7a4179c75cc94bab2656baeaec9484b2 https://www.encodeproject.org/files/ENCFF555MVU/@@download/ENCFF555MVU.bed.gz hg19 archived low read length ENCFF297SZY bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF592WAL, ENCFF792KZU 6877847 ENCODE Processing Pipeline c2b81806f84ef03fed647b67d570495d https://www.encodeproject.org/files/ENCFF297SZY/@@download/ENCFF297SZY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF844TSM bed narrowPeak peaks ENCSR382XLA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF289XMH, ENCFF817NEK 4355085 ENCODE Processing Pipeline bbecb33e1f7d254df166830e5d22e528 https://www.encodeproject.org/files/ENCFF844TSM/@@download/ENCFF844TSM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF371DJF bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 2 ENCFF425JYG, ENCFF938TLX 4494818 ENCODE Processing Pipeline cd3d89c26a1f5e84e8bd37e36a5d534b https://www.encodeproject.org/files/ENCFF371DJF/@@download/ENCFF371DJF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF699WES bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6803821 ENCODE Processing Pipeline 30f8a9e2d5f84d79f7c8112a89120a22 https://www.encodeproject.org/files/ENCFF699WES/@@download/ENCFF699WES.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF778OYJ bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6686411 ENCODE Processing Pipeline 1cf0b24d5c55b03395a83d20ba7bab99 https://www.encodeproject.org/files/ENCFF778OYJ/@@download/ENCFF778OYJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF508BAI bed narrowPeak peaks ENCSR017CEO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CUX1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF216GDM 6401918 ENCODE Processing Pipeline e857a61d9d61776699bf2b20d368911d https://www.encodeproject.org/files/ENCFF508BAI/@@download/ENCFF508BAI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF230HEO bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF379RWQ, ENCFF387KXA, ENCFF762JSN 6283060 ENCODE Processing Pipeline 6bd035ce5f6076037cebcab24c8b18c8 https://www.encodeproject.org/files/ENCFF230HEO/@@download/ENCFF230HEO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF725JDK bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 2 ENCFF011BPU, ENCFF536GEN, ENCFF824DBS 2546615 ENCODE Processing Pipeline 73659440cf11ea61b2843f4494dcf902 https://www.encodeproject.org/files/ENCFF725JDK/@@download/ENCFF725JDK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF397APL bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 2 ENCFF229UUP, ENCFF760DHW 6091011 ENCODE Processing Pipeline e7eeb8d15378936a2d66d41bc3c8b987 https://www.encodeproject.org/files/ENCFF397APL/@@download/ENCFF397APL.bed.gz hg19 released ENCFF534OBN bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF185JZF, ENCFF725UGE 4994583 ENCODE Processing Pipeline e342cea49f835f1c6541f8e569416001 https://www.encodeproject.org/files/ENCFF534OBN/@@download/ENCFF534OBN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF975MKK bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF927NKH, ENCFF980CFV 6911124 ENCODE Processing Pipeline 3891d0f8ae8e4448f82ee4aaa08694b8 https://www.encodeproject.org/files/ENCFF975MKK/@@download/ENCFF975MKK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF383XWW bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF622MSR, ENCFF904LDR 5301624 ENCODE Processing Pipeline f78001de2701c3d1ead6e1dfb6d25875 https://www.encodeproject.org/files/ENCFF383XWW/@@download/ENCFF383XWW.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF915TWO bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 6245568 ENCODE Processing Pipeline be53c15e63e17b68db330f759e7bf3e4 https://www.encodeproject.org/files/ENCFF915TWO/@@download/ENCFF915TWO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF315GZR bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 4255538 ENCODE Processing Pipeline 4f8d22993149919034182d1036579416 https://www.encodeproject.org/files/ENCFF315GZR/@@download/ENCFF315GZR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF400BJI bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 2 ENCFF290PNU, ENCFF999EQI 6023081 ENCODE Processing Pipeline 754ac46ee432a8221951361cc4382282 https://www.encodeproject.org/files/ENCFF400BJI/@@download/ENCFF400BJI.bed.gz hg19 released ENCFF262SHR bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF552AOU, ENCFF755SZH, ENCFF938OPX 5263028 ENCODE Processing Pipeline dd401ee2de7039f1bc6261885f376413 https://www.encodeproject.org/files/ENCFF262SHR/@@download/ENCFF262SHR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF154EAD bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF130JET, ENCFF540RWT 5164288 ENCODE Processing Pipeline 3ece3de3b2b08e7958c8b5e6a373202f https://www.encodeproject.org/files/ENCFF154EAD/@@download/ENCFF154EAD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF265NZD bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 2 ENCFF540UGI, ENCFF713UQY, ENCFF854RGJ 7207096 ENCODE Processing Pipeline b6d0dca4b146c770fc2c5697cd8aa194 https://www.encodeproject.org/files/ENCFF265NZD/@@download/ENCFF265NZD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF334IIE bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 4718507 ENCODE Processing Pipeline 15b4c3e9c786715520f4db3583147756 https://www.encodeproject.org/files/ENCFF334IIE/@@download/ENCFF334IIE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF978OGV bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 2 ENCFF538MGJ, ENCFF673QQK, ENCFF901HAO 6664109 ENCODE Processing Pipeline 08fc006cd3816c33384447ecec84d699 https://www.encodeproject.org/files/ENCFF978OGV/@@download/ENCFF978OGV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF283QCO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF901ETI, ENCFF943IIV 5944397 ENCODE Processing Pipeline c5a1ccee1fd2fe27f7c40c0aa1289bb9 https://www.encodeproject.org/files/ENCFF283QCO/@@download/ENCFF283QCO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF777XYO bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF859ZYD, ENCFF901ETI 6114774 ENCODE Processing Pipeline 591a63e89b91ba7784a1f2dd8d5bdeca https://www.encodeproject.org/files/ENCFF777XYO/@@download/ENCFF777XYO.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF269CZZ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 6536831 ENCODE Processing Pipeline eb59420ac468be2b23c240c9cce56837 https://www.encodeproject.org/files/ENCFF269CZZ/@@download/ENCFF269CZZ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF195CRO bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF140XGV, ENCFF999JKD 3290869 ENCODE Processing Pipeline bc79aa627629fe2c0e0dba7cc8faa03f https://www.encodeproject.org/files/ENCFF195CRO/@@download/ENCFF195CRO.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF412SBF bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF632RLI, ENCFF901MQU 5160755 ENCODE Processing Pipeline f6d3c63dcd53e3fa5b2668f469cd49f1 https://www.encodeproject.org/files/ENCFF412SBF/@@download/ENCFF412SBF.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF137OKC bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 2 ENCFF419TYN, ENCFF901MQU 5351871 ENCODE Processing Pipeline d1abd021e471634b526d8eec0cf160df https://www.encodeproject.org/files/ENCFF137OKC/@@download/ENCFF137OKC.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF734DHL bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF692IRB 3655091 ENCODE Processing Pipeline 7cb48ecf5f77bc949c309982601750e9 https://www.encodeproject.org/files/ENCFF734DHL/@@download/ENCFF734DHL.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF185LGF bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF123UZJ 5913094 ENCODE Processing Pipeline 47df0023443cb72997dac6aa2d0ad90f https://www.encodeproject.org/files/ENCFF185LGF/@@download/ENCFF185LGF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF883CRS bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF184JSZ, ENCFF356DXM 3590795 ENCODE Processing Pipeline a541d39a03f17cf870926ee14e6558be https://www.encodeproject.org/files/ENCFF883CRS/@@download/ENCFF883CRS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF328DUA bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 5231189 ENCODE Processing Pipeline 85f53ffb30f6faf16fe0caa5e9b060c9 https://www.encodeproject.org/files/ENCFF328DUA/@@download/ENCFF328DUA.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF883DUG bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF371ZBY, ENCFF963CVB 3918845 ENCODE Processing Pipeline 1c823522588c52a4e26b23b040b53980 https://www.encodeproject.org/files/ENCFF883DUG/@@download/ENCFF883DUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF556WPW bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF630WRV, ENCFF671VNQ 4086760 ENCODE Processing Pipeline 38325030d7c783e7c3e119b604237087 https://www.encodeproject.org/files/ENCFF556WPW/@@download/ENCFF556WPW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF493ZGH bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 2 ENCFF445QVI, ENCFF563WQV, ENCFF927EKA 6278467 ENCODE Processing Pipeline c3e6b8a485e8bd298fa9c2ae32c9ffe3 https://www.encodeproject.org/files/ENCFF493ZGH/@@download/ENCFF493ZGH.bed.gz hg19 released borderline replicate concordance ENCFF451PTD bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF500QLL, ENCFF782VTV 3950534 ENCODE Processing Pipeline a1b98e61822ac785726b5b9bffafc2a8 https://www.encodeproject.org/files/ENCFF451PTD/@@download/ENCFF451PTD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF884XPS bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF668MHY 4699127 ENCODE Processing Pipeline 6f90fde65bb7f6500c06791315ab13ba https://www.encodeproject.org/files/ENCFF884XPS/@@download/ENCFF884XPS.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF924QYS bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF349UGY, ENCFF408JOT, ENCFF511AXI 6954946 ENCODE Processing Pipeline 347204c58c34a7293b03f05d4a00694b https://www.encodeproject.org/files/ENCFF924QYS/@@download/ENCFF924QYS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF447AAX bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF185VLH 4611839 ENCODE Processing Pipeline 669c475ec01d0c94b9df6df24ffcd46b https://www.encodeproject.org/files/ENCFF447AAX/@@download/ENCFF447AAX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF449NJO bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF763XIK 4667131 ENCODE Processing Pipeline 0797f59575ef5312ca61fdee9a90c048 https://www.encodeproject.org/files/ENCFF449NJO/@@download/ENCFF449NJO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF540KAO bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF564RWN 5952451 ENCODE Processing Pipeline d193db236e8f3bcdddf2ce2d30878ed8 https://www.encodeproject.org/files/ENCFF540KAO/@@download/ENCFF540KAO.bed.gz hg19 released borderline replicate concordance ENCFF595JYV bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF488TFQ, ENCFF837IOW 3409558 ENCODE Processing Pipeline da26d58730ca7b31c63da318e70aa432 https://www.encodeproject.org/files/ENCFF595JYV/@@download/ENCFF595JYV.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF697EFZ bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF028JOY, ENCFF864UEQ 5816738 ENCODE Processing Pipeline 01ffbdbf4f6cbb48395de1272c617067 https://www.encodeproject.org/files/ENCFF697EFZ/@@download/ENCFF697EFZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF715NVD bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051QXN, ENCFF205KMO 6402540 ENCODE Processing Pipeline 83c5f44ea3a46ca43b1c3c591f644c11 https://www.encodeproject.org/files/ENCFF715NVD/@@download/ENCFF715NVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF878NMO bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF471DSB, ENCFF512WDI 5311047 ENCODE Processing Pipeline 1abc77b75264c1b2a827ca80269dbc63 https://www.encodeproject.org/files/ENCFF878NMO/@@download/ENCFF878NMO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF218LZW bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF497SFX, ENCFF949HSN 4408545 ENCODE Processing Pipeline 6011fd5b4090fe3b50fa63bcff9b68ec https://www.encodeproject.org/files/ENCFF218LZW/@@download/ENCFF218LZW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001XQI bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLC 930265 John Stamatoyannopoulos, UW 8cb17cf60a3910f60e2d3659114a6ce5 https://www.encodeproject.org/files/ENCFF001XQI/@@download/ENCFF001XQI.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF680YPK bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF783NTR, ENCFF788YCK 4426464 ENCODE Processing Pipeline 7d41c9c627502dd068266c2530142b6d https://www.encodeproject.org/files/ENCFF680YPK/@@download/ENCFF680YPK.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF300BYZ bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5441262 ENCODE Processing Pipeline 5b3cb310ec86c123168a2c4e64ccff0a https://www.encodeproject.org/files/ENCFF300BYZ/@@download/ENCFF300BYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF467DQG bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF939XHK, ENCFF952XCP 5208926 ENCODE Processing Pipeline a2ea47320f68ff5aa0b871eaef64968c https://www.encodeproject.org/files/ENCFF467DQG/@@download/ENCFF467DQG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF839PVK bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF382BNF, ENCFF616LIW 4042486 ENCODE Processing Pipeline 8e92fc8e45b1744b7cdcf659febcb13c https://www.encodeproject.org/files/ENCFF839PVK/@@download/ENCFF839PVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF846AFR bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF575KJF 6620782 ENCODE Processing Pipeline 822e5a55f7455ea033fbd10bee949f78 https://www.encodeproject.org/files/ENCFF846AFR/@@download/ENCFF846AFR.bed.gz hg19 released borderline replicate concordance ENCFF233WRK bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 2 ENCFF766FGH, ENCFF999EQI 6273667 ENCODE Processing Pipeline bf9c6ff41f824cfacebeaaf81e8d3024 https://www.encodeproject.org/files/ENCFF233WRK/@@download/ENCFF233WRK.bed.gz hg19 released ENCFF501TBE bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 2 ENCFF602SNK, ENCFF620EZL, ENCFF839OMX 6383565 ENCODE Processing Pipeline aad3a9b2193706c9236a2257ad2da9d9 https://www.encodeproject.org/files/ENCFF501TBE/@@download/ENCFF501TBE.bed.gz hg19 released ENCFF676HRI bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 5153956 ENCODE Processing Pipeline 8d4df699854aa4528b138d46b01e6f27 https://www.encodeproject.org/files/ENCFF676HRI/@@download/ENCFF676HRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF384GPX bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF668ZBZ 4583842 ENCODE Processing Pipeline 66240a4022f81c750f771982b351a2a8 https://www.encodeproject.org/files/ENCFF384GPX/@@download/ENCFF384GPX.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF543EHV bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 2 ENCFF498EIA, ENCFF631FAS, ENCFF977MAY 4568839 ENCODE Processing Pipeline 4b258c14634d117050aaa5b3612442c2 https://www.encodeproject.org/files/ENCFF543EHV/@@download/ENCFF543EHV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF001XQQ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HLX 595419 John Stamatoyannopoulos, UW 917b66a2b31af8ad0d2b6b3069a93290 https://www.encodeproject.org/files/ENCFF001XQQ/@@download/ENCFF001XQQ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF114UPJ bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF145CAZ, ENCFF707NXH 3429862 ENCODE Processing Pipeline bc7fbcace730b80b2ed24ecc3ecc69f7 https://www.encodeproject.org/files/ENCFF114UPJ/@@download/ENCFF114UPJ.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF239TWK bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 2 ENCFF049MPQ, ENCFF634EGZ 6593002 ENCODE Processing Pipeline c8ea271d002a5216af0f7d2365a60489 https://www.encodeproject.org/files/ENCFF239TWK/@@download/ENCFF239TWK.bed.gz hg19 released ENCFF604LSK bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF952RZS 5248301 ENCODE Processing Pipeline 13dd57e52c44a2ce112772c990f99a64 https://www.encodeproject.org/files/ENCFF604LSK/@@download/ENCFF604LSK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF420MBN bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 7005846 ENCODE Processing Pipeline 9105af60d97e15745da580d902c1dbe1 https://www.encodeproject.org/files/ENCFF420MBN/@@download/ENCFF420MBN.bed.gz hg19 released ENCFF620JKI bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 5345789 ENCODE Processing Pipeline cc2c46c0e7f74d7af9a17d5c30f9b684 https://www.encodeproject.org/files/ENCFF620JKI/@@download/ENCFF620JKI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF107RYF bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF414KEO, ENCFF599MVB 5226684 ENCODE Processing Pipeline 41ab63e5237d1da80bdb841fe9702e85 https://www.encodeproject.org/files/ENCFF107RYF/@@download/ENCFF107RYF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF362TZV bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF485QJI, ENCFF745VHU 4711542 ENCODE Processing Pipeline f15dc4f03a6e6eeea01387cebb43de21 https://www.encodeproject.org/files/ENCFF362TZV/@@download/ENCFF362TZV.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF911SLA bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF058VAL, ENCFF545DZO 1155711 ENCODE Processing Pipeline 3ac3a421702105d770b9d7d562d971ee https://www.encodeproject.org/files/ENCFF911SLA/@@download/ENCFF911SLA.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF784YSB bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF033CIS, ENCFF174UCM 3792766 ENCODE Processing Pipeline 8f111d3686ef366f4aa8d1681490076c https://www.encodeproject.org/files/ENCFF784YSB/@@download/ENCFF784YSB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF884SBE bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF292YHA, ENCFF714VYF, ENCFF782VTV 3331670 ENCODE Processing Pipeline 5397da8ebe0a581e7021de33216a3a87 https://www.encodeproject.org/files/ENCFF884SBE/@@download/ENCFF884SBE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF586OYO bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6659170 ENCODE Processing Pipeline c52b140dffc33236cb7f4de8c8ede3f6 https://www.encodeproject.org/files/ENCFF586OYO/@@download/ENCFF586OYO.bed.gz hg19 released mild to moderate bottlenecking ENCFF531WHZ bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF429HOM 6763828 ENCODE Processing Pipeline e2fd6e82431d48910046afc9e6e2840a https://www.encodeproject.org/files/ENCFF531WHZ/@@download/ENCFF531WHZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF497RBU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 7172441 ENCODE Processing Pipeline 85544aad8c0d6fb0f2a0e380f554bd76 https://www.encodeproject.org/files/ENCFF497RBU/@@download/ENCFF497RBU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF986YIT bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF260DQF, ENCFF277EKP, ENCFF902HRT 4288075 ENCODE Processing Pipeline 65a516199b0ca25e083c873d4791d008 https://www.encodeproject.org/files/ENCFF986YIT/@@download/ENCFF986YIT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF106XCP bed narrowPeak peaks ENCSR791AGT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2018-01-29 ENCODE 2 ENCFF806VEG, ENCFF843IXX 7359580 ENCODE Processing Pipeline 03abac627f5d7e3670e673c5de04311d https://www.encodeproject.org/files/ENCFF106XCP/@@download/ENCFF106XCP.bed.gz hg19 released experiment not submitted to GEO ENCFF241KMD bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 2 ENCFF592WAL, ENCFF819AJF 6464014 ENCODE Processing Pipeline 2faeb82f0ea30ae9a270f9d2fa11cfb2 https://www.encodeproject.org/files/ENCFF241KMD/@@download/ENCFF241KMD.bed.gz hg19 released mild to moderate bottlenecking ENCFF078MLZ bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 2 ENCFF316MDQ, ENCFF449NNE, ENCFF999EQI 6634715 ENCODE Processing Pipeline 951a881a87ac93ec1bf525e4001051bd https://www.encodeproject.org/files/ENCFF078MLZ/@@download/ENCFF078MLZ.bed.gz hg19 released borderline replicate concordance ENCFF531FFM bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF751LSF 5126375 ENCODE Processing Pipeline 342037da70c0419ae21d4af373a10d40 https://www.encodeproject.org/files/ENCFF531FFM/@@download/ENCFF531FFM.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF222GJV bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 2 ENCFF215KGT, ENCFF592WAL 5988641 ENCODE Processing Pipeline ef43bf68252988f3222d451c9f68c7a5 https://www.encodeproject.org/files/ENCFF222GJV/@@download/ENCFF222GJV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF537WLH bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 7140162 ENCODE Processing Pipeline 7beca13c72ab6a9518c4c80fa839c534 https://www.encodeproject.org/files/ENCFF537WLH/@@download/ENCFF537WLH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF752ZNY bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF112OEB, ENCFF186LRX, ENCFF209PKW 6971417 ENCODE Processing Pipeline fbb61f292703876126770e0316bb2fb4 https://www.encodeproject.org/files/ENCFF752ZNY/@@download/ENCFF752ZNY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF007QMQ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 6900980 ENCODE Processing Pipeline d8e1cf8388b04170b3f1a6067d13be0c https://www.encodeproject.org/files/ENCFF007QMQ/@@download/ENCFF007QMQ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF713XLB bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 2 ENCFF320TZV, ENCFF760DHW 6268005 ENCODE Processing Pipeline 581a0088f862964302b319aef8683c80 https://www.encodeproject.org/files/ENCFF713XLB/@@download/ENCFF713XLB.bed.gz hg19 released ENCFF763SUY bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF144FLB, ENCFF496TSK, ENCFF574DLY 5632476 ENCODE Processing Pipeline 2db2fbf17e79b23bab75975472a7cbe7 https://www.encodeproject.org/files/ENCFF763SUY/@@download/ENCFF763SUY.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF905USH bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF766AOQ 6730166 ENCODE Processing Pipeline 03fb4667c800aa7b1ecdb0abb28024de https://www.encodeproject.org/files/ENCFF905USH/@@download/ENCFF905USH.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF023RDZ bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF078MCO, ENCFF545DZO 3606433 ENCODE Processing Pipeline d4414b68ef54e6ffdfa4e70ddf3c888f https://www.encodeproject.org/files/ENCFF023RDZ/@@download/ENCFF023RDZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF147CFU bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 2 ENCFF780VWO, ENCFF901CND 6073498 ENCODE Processing Pipeline f119ed6bcc4288b8a62e142d50dcf2cc https://www.encodeproject.org/files/ENCFF147CFU/@@download/ENCFF147CFU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF732KKY bed narrowPeak peaks ENCSR112ALD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREB1-human DNA False 2017-11-14 ENCODE 2 ENCFF239CYG, ENCFF449NNE, ENCFF999EQI 6959076 ENCODE Processing Pipeline 33b9d759adc2fda406dd8706c23499f5 https://www.encodeproject.org/files/ENCFF732KKY/@@download/ENCFF732KKY.bed.gz hg19 released experiment not submitted to GEO ENCFF669ACI bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 7096163 ENCODE Processing Pipeline b03385abd664a172cb86eefdadf9db0a https://www.encodeproject.org/files/ENCFF669ACI/@@download/ENCFF669ACI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF708LWT bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4652004 ENCODE Processing Pipeline ddcef531b8008fc4729329332ca383ef https://www.encodeproject.org/files/ENCFF708LWT/@@download/ENCFF708LWT.bed.gz hg19 released low read length, low read depth ENCFF676HIP bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF817NEK, ENCFF931AAW 4862542 ENCODE Processing Pipeline 50eaf73fab5cf429f4c0f9625aef3717 https://www.encodeproject.org/files/ENCFF676HIP/@@download/ENCFF676HIP.bed.gz hg19 archived low read length, low read depth ENCFF494HZF bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF602BPO 5915098 ENCODE Processing Pipeline edd81504aab871fbb08fc8cbb1f34da2 https://www.encodeproject.org/files/ENCFF494HZF/@@download/ENCFF494HZF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF411PFB bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 2 ENCFF049MPQ, ENCFF503QER 6218142 ENCODE Processing Pipeline b56920f4e3ee139efec51cb15646b66e https://www.encodeproject.org/files/ENCFF411PFB/@@download/ENCFF411PFB.bed.gz hg19 released ENCFF392FYA bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF049HWT, ENCFF373SVA, ENCFF632RLI 5815654 ENCODE Processing Pipeline 789ea54b22d634605073450e80cc16cd https://www.encodeproject.org/files/ENCFF392FYA/@@download/ENCFF392FYA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF354CAT bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF219QMR, ENCFF287SKW 6812560 ENCODE Processing Pipeline 8cd8dfcc8fd28ef2364d87ca60b3c47f https://www.encodeproject.org/files/ENCFF354CAT/@@download/ENCFF354CAT.bed.gz hg19 released ENCFF001XMQ bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GZC 764324 John Stamatoyannopoulos, UW 9cd9622b1e96e405420eac8b55cb3556 https://www.encodeproject.org/files/ENCFF001XMQ/@@download/ENCFF001XMQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF535IOO bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF054LVG, ENCFF921SZK 4745354 ENCODE Processing Pipeline fc5ee30bf6e6b762349c3f3a9fca85d5 https://www.encodeproject.org/files/ENCFF535IOO/@@download/ENCFF535IOO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF007EZA bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF248VFM, ENCFF602XLT 5283201 ENCODE Processing Pipeline 8e8f50efe22e1fc2fd9ff11a5fd84fa4 https://www.encodeproject.org/files/ENCFF007EZA/@@download/ENCFF007EZA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF402AKR bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF985MWI 5805742 ENCODE Processing Pipeline 7be640e4784d373a19992506b11363e1 https://www.encodeproject.org/files/ENCFF402AKR/@@download/ENCFF402AKR.bed.gz hg19 released borderline replicate concordance ENCFF607QZV bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 2 ENCFF278BHT, ENCFF849LYY 4202263 ENCODE Processing Pipeline 35d64c561d4e98910bb0eb0599d6f9b4 https://www.encodeproject.org/files/ENCFF607QZV/@@download/ENCFF607QZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF086HCP bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 2 ENCFF020EIS, ENCFF447KVS, ENCFF823USR 7158938 ENCODE Processing Pipeline 9aa3bdff9c05546a2d675a79f4bba726 https://www.encodeproject.org/files/ENCFF086HCP/@@download/ENCFF086HCP.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF567MQM bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 4952334 ENCODE Processing Pipeline 14bcc8dd6f42a19f81af4b33a4bb1706 https://www.encodeproject.org/files/ENCFF567MQM/@@download/ENCFF567MQM.bed.gz hg19 released low read length ENCFF750GSF bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 2 ENCFF319QTJ, ENCFF849LYY 5126280 ENCODE Processing Pipeline 30f8100ecdac18918e2280d601391371 https://www.encodeproject.org/files/ENCFF750GSF/@@download/ENCFF750GSF.bed.gz hg19 archived low read length ENCFF742QVY bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 2 ENCFF593HGL 6516160 ENCODE Processing Pipeline 4289acf52cedc6b18d7cd31dd9344bf5 https://www.encodeproject.org/files/ENCFF742QVY/@@download/ENCFF742QVY.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF144UTI bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 2 ENCFF324BHS, ENCFF999EQI 6848962 ENCODE Processing Pipeline 6f0113d9d68f87fd86f951dafcfb078f https://www.encodeproject.org/files/ENCFF144UTI/@@download/ENCFF144UTI.bed.gz hg19 released ENCFF750HPK bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 2 ENCFF824TEZ, ENCFF999EQI 6194499 ENCODE Processing Pipeline 8db57f551c47f3300175716720339e63 https://www.encodeproject.org/files/ENCFF750HPK/@@download/ENCFF750HPK.bed.gz hg19 released borderline replicate concordance ENCFF519AMH bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF525DEV 4940262 ENCODE Processing Pipeline 5af1f616d2e60b6aeaad413f0f5e6ff5 https://www.encodeproject.org/files/ENCFF519AMH/@@download/ENCFF519AMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF321JQC bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 2 ENCFF423QHQ, ENCFF629SZV 5150689 ENCODE Processing Pipeline 0ff9e0014613f93f25fa441629d6bad6 https://www.encodeproject.org/files/ENCFF321JQC/@@download/ENCFF321JQC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF695CJR bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 4894410 ENCODE Processing Pipeline f0447a1732c7b69f42bddd84dc11d400 https://www.encodeproject.org/files/ENCFF695CJR/@@download/ENCFF695CJR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF566ZXA bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 2 ENCFF604LKK, ENCFF939XHK 5116844 ENCODE Processing Pipeline b13346267616a6fd4bb07856b17a66f8 https://www.encodeproject.org/files/ENCFF566ZXA/@@download/ENCFF566ZXA.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF145RHD bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF735MSB 3639484 ENCODE Processing Pipeline 2fa180c4b4cbade76705e4d2ff5d81f3 https://www.encodeproject.org/files/ENCFF145RHD/@@download/ENCFF145RHD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF381HBX bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4173252 ENCODE Processing Pipeline ce09c9ade44c240c9999ad04a2f8b0da https://www.encodeproject.org/files/ENCFF381HBX/@@download/ENCFF381HBX.bed.gz hg19 released low read length, low read depth ENCFF198VHZ bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 2 ENCFF051LGR, ENCFF817NEK 4377234 ENCODE Processing Pipeline 26a8b20b0e388c2e0b8de7695c1ac868 https://www.encodeproject.org/files/ENCFF198VHZ/@@download/ENCFF198VHZ.bed.gz hg19 archived low read length, low read depth ENCFF737CTQ bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 2 ENCFF424VMX, ENCFF939XHK 4808199 ENCODE Processing Pipeline ae1ebc83660c2e4e0a3262601ca989cd https://www.encodeproject.org/files/ENCFF737CTQ/@@download/ENCFF737CTQ.bed.gz hg19 released low read length, low read depth ENCFF719GJP bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF449NNE, ENCFF794JSD 6416388 ENCODE Processing Pipeline 5230bc97fb13b74944790369817f78e9 https://www.encodeproject.org/files/ENCFF719GJP/@@download/ENCFF719GJP.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF307KRD bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF584BRF 2707163 ENCODE Processing Pipeline 2f5800e66ceebed018a31ec8f28b889e https://www.encodeproject.org/files/ENCFF307KRD/@@download/ENCFF307KRD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF507JPU bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 6761455 ENCODE Processing Pipeline 192e9a0745904e52ee8620b8be176c1b https://www.encodeproject.org/files/ENCFF507JPU/@@download/ENCFF507JPU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF506ZBZ bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 6818155 ENCODE Processing Pipeline 608eaff7ddd2e050aa1865b7cbf368e2 https://www.encodeproject.org/files/ENCFF506ZBZ/@@download/ENCFF506ZBZ.bed.gz hg19 released ENCFF152FPH bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF656QRB, ENCFF880DIZ 4040861 ENCODE Processing Pipeline 0cae1d7e990f72777ddc0e9fab1cd9a6 https://www.encodeproject.org/files/ENCFF152FPH/@@download/ENCFF152FPH.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF001XLS bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWC 842901 John Stamatoyannopoulos, UW ef4b0ee3401bb8c942782a4352a20cdd https://www.encodeproject.org/files/ENCFF001XLS/@@download/ENCFF001XLS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF671VPQ bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF083JSC, ENCFF784IKK 3970636 ENCODE Processing Pipeline 6c79784d63c63948066e481adf2d8f16 https://www.encodeproject.org/files/ENCFF671VPQ/@@download/ENCFF671VPQ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF236MQY bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 2 ENCFF121HVG, ENCFF269ZDG, ENCFF560TNV 6878077 ENCODE Processing Pipeline d4c2a4c93af93830b68d3592c165b9df https://www.encodeproject.org/files/ENCFF236MQY/@@download/ENCFF236MQY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF480NXP bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 2 ENCFF760DHW, ENCFF807RZI 6242908 ENCODE Processing Pipeline 9fd2f9158d669bdb9505415b01fedae1 https://www.encodeproject.org/files/ENCFF480NXP/@@download/ENCFF480NXP.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF615UXP bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 2 ENCFF011USL, ENCFF113PTE, ENCFF761NWZ 7037910 ENCODE Processing Pipeline addba1fd536484c460b922872ee88e88 https://www.encodeproject.org/files/ENCFF615UXP/@@download/ENCFF615UXP.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF501HAG bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF400XIQ 5821870 ENCODE Processing Pipeline 1750bc311afac8615c8af3816673b3c9 https://www.encodeproject.org/files/ENCFF501HAG/@@download/ENCFF501HAG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF707CDO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 7127888 ENCODE Processing Pipeline 4dcaba83d4d91c73c9e927c32207b2d4 https://www.encodeproject.org/files/ENCFF707CDO/@@download/ENCFF707CDO.bed.gz hg19 released ENCFF141MCC bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 2 ENCFF056GKK, ENCFF529BVI, ENCFF772FBN 6486394 ENCODE Processing Pipeline bddf5b68e8a40ac56a424d7d581756fa https://www.encodeproject.org/files/ENCFF141MCC/@@download/ENCFF141MCC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF420CVJ bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF635IBY 3845374 ENCODE Processing Pipeline 0d0f8815058560c5cf3f8d737793d7c3 https://www.encodeproject.org/files/ENCFF420CVJ/@@download/ENCFF420CVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF994IJB bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF749CGY, ENCFF864ASU 4395024 ENCODE Processing Pipeline fef3492e5f3a79eafdc53357e6a43d7e https://www.encodeproject.org/files/ENCFF994IJB/@@download/ENCFF994IJB.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF591LXN bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF960JYT, ENCFF963XWS 5623587 ENCODE Processing Pipeline 21ce3cd93a859b9e3293d43edeb3b786 https://www.encodeproject.org/files/ENCFF591LXN/@@download/ENCFF591LXN.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF333ZRM bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF498PCU 4006533 ENCODE Processing Pipeline f820d162981ee44761af9e9e7721d791 https://www.encodeproject.org/files/ENCFF333ZRM/@@download/ENCFF333ZRM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF216OCU bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF746RLX 5570790 ENCODE Processing Pipeline 8c6f2b5a870cb7eebd87f84e106a7e17 https://www.encodeproject.org/files/ENCFF216OCU/@@download/ENCFF216OCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF678BIU bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF083VSQ, ENCFF545DZO 3364966 ENCODE Processing Pipeline d6c07a3b94a1fe925fb64986b72cb4d2 https://www.encodeproject.org/files/ENCFF678BIU/@@download/ENCFF678BIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF261TNJ bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 6196483 ENCODE Processing Pipeline 9671e3446e9e32e48a778781a5077bde https://www.encodeproject.org/files/ENCFF261TNJ/@@download/ENCFF261TNJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF324WHA bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 6577461 ENCODE Processing Pipeline 383eeeeeb7dac3f197aa9d7d9a110d35 https://www.encodeproject.org/files/ENCFF324WHA/@@download/ENCFF324WHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF255VCC bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 6398990 ENCODE Processing Pipeline 7344145cc93f4211f897581fcc9e10b5 https://www.encodeproject.org/files/ENCFF255VCC/@@download/ENCFF255VCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF905FMJ bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF694EPR 4633715 ENCODE Processing Pipeline e9b1b628efd91bd2cf068be3eab1e568 https://www.encodeproject.org/files/ENCFF905FMJ/@@download/ENCFF905FMJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF976RBY bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 7083861 ENCODE Processing Pipeline 4e66d1f98e7e419ea59e2f50a4f92889 https://www.encodeproject.org/files/ENCFF976RBY/@@download/ENCFF976RBY.bed.gz hg19 released mild to moderate bottlenecking ENCFF583BIS bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF093ATD, ENCFF287SKW 6237077 ENCODE Processing Pipeline e4c678d2343369f34a9f466600698885 https://www.encodeproject.org/files/ENCFF583BIS/@@download/ENCFF583BIS.bed.gz hg19 released mild to moderate bottlenecking ENCFF565ZVL bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF787PBQ 6374326 ENCODE Processing Pipeline 4b9eb0d586266256c48f0eb1369029f9 https://www.encodeproject.org/files/ENCFF565ZVL/@@download/ENCFF565ZVL.bed.gz hg19 released low read depth ENCFF917EWZ bed narrowPeak peaks ENCSR197WGI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens NFE2L2-human DNA False 2016-09-01 ENCODE 2 ENCFF844JHW, ENCFF880YHS 4694335 ENCODE Processing Pipeline 6979d042bfb430578e2aa0cfef2a976e https://www.encodeproject.org/files/ENCFF917EWZ/@@download/ENCFF917EWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF266JIG bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 2 ENCFF158ZFF, ENCFF775HLS, ENCFF864HWM 7207521 ENCODE Processing Pipeline d7dddbb66cdf03e475c7f4d2d47ab5a3 https://www.encodeproject.org/files/ENCFF266JIG/@@download/ENCFF266JIG.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF691NVX bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 2 ENCFF011BPU, ENCFF450BPA 5980204 ENCODE Processing Pipeline b31ee325e890e064436b069b008e24a3 https://www.encodeproject.org/files/ENCFF691NVX/@@download/ENCFF691NVX.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF688ELV bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 5214652 ENCODE Processing Pipeline 1e982fdcdd0d5a33ec084f5e05996c50 https://www.encodeproject.org/files/ENCFF688ELV/@@download/ENCFF688ELV.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF669CKL bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 5169710 ENCODE Processing Pipeline d898317747cf0dc762e0cc49c37d2566 https://www.encodeproject.org/files/ENCFF669CKL/@@download/ENCFF669CKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF040DGA bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 5183776 ENCODE Processing Pipeline d9c3da1be91de8c8c2e9fa1a52c88cdc https://www.encodeproject.org/files/ENCFF040DGA/@@download/ENCFF040DGA.bed.gz hg19 released low read length, low read depth ENCFF418WIA bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7030043 ENCODE Processing Pipeline 548036a1564917488e5a98e4507384f0 https://www.encodeproject.org/files/ENCFF418WIA/@@download/ENCFF418WIA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF614KPG bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF216LIY, ENCFF567WDW, ENCFF618RNL 6958291 ENCODE Processing Pipeline fc1095e01fe1d903c820780cba8e5e30 https://www.encodeproject.org/files/ENCFF614KPG/@@download/ENCFF614KPG.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF813JVU bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 6793802 ENCODE Processing Pipeline f2494b346b270c93b3bc1584d8375fab https://www.encodeproject.org/files/ENCFF813JVU/@@download/ENCFF813JVU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF851UVY bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF760DHW, ENCFF922YTF 6466064 ENCODE Processing Pipeline fa55ce31f0934c16ae9af3279a456565 https://www.encodeproject.org/files/ENCFF851UVY/@@download/ENCFF851UVY.bed.gz hg19 released borderline replicate concordance ENCFF288DTP bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 2 ENCFF339ZHE, ENCFF760DHW 5578012 ENCODE Processing Pipeline 291feff4cc8a0ee10ea9aa18dc8d0ac7 https://www.encodeproject.org/files/ENCFF288DTP/@@download/ENCFF288DTP.bed.gz hg19 released mild to moderate bottlenecking ENCFF191TQD bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3666893 ENCODE Processing Pipeline 1dbb0ee0b20c3bfca65897da6ddd66b2 https://www.encodeproject.org/files/ENCFF191TQD/@@download/ENCFF191TQD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF830BYO bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 2 ENCFF688XDE, ENCFF849LYY 3770088 ENCODE Processing Pipeline fe9c7b6828ab89faf53c0114b285c86b https://www.encodeproject.org/files/ENCFF830BYO/@@download/ENCFF830BYO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF290WHA bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6795268 ENCODE Processing Pipeline 03d4b77c9f3bbca774662f96b3ff8334 https://www.encodeproject.org/files/ENCFF290WHA/@@download/ENCFF290WHA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF110VMS bed narrowPeak peaks ENCSR897MYK ChIP-seq EFO:0001086 A549 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF061MPQ, ENCFF321TUP, ENCFF806YIH 6904209 ENCODE Processing Pipeline cca853464852b01e18ceb73ff9c13383 https://www.encodeproject.org/files/ENCFF110VMS/@@download/ENCFF110VMS.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption ENCFF799NMK bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 6794130 ENCODE Processing Pipeline dc1143c5fb672ca9b5a0bf818538506d https://www.encodeproject.org/files/ENCFF799NMK/@@download/ENCFF799NMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF225KYS bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 2 ENCFF049MPQ, ENCFF583FAG, ENCFF869KUX 6832143 ENCODE Processing Pipeline 1cdd3974853b9cfc638c15630be886dd https://www.encodeproject.org/files/ENCFF225KYS/@@download/ENCFF225KYS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF804JRA bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF827OOM 4445975 ENCODE Processing Pipeline 3a9ddd657f91b478fa86ab2d1e9396b2 https://www.encodeproject.org/files/ENCFF804JRA/@@download/ENCFF804JRA.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF526YPV bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6327058 ENCODE Processing Pipeline 2f41dc28c750e8240fc22a540db5efc3 https://www.encodeproject.org/files/ENCFF526YPV/@@download/ENCFF526YPV.bed.gz hg19 released mild to moderate bottlenecking ENCFF181NXH bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF265BKP 6531032 ENCODE Processing Pipeline d7a9067a72422c7b62771d5fb948ed21 https://www.encodeproject.org/files/ENCFF181NXH/@@download/ENCFF181NXH.bed.gz hg19 archived mild to moderate bottlenecking ENCFF475IAW bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF171DED 6950323 ENCODE Processing Pipeline 0f0e403330e4703cba7a2505524ebace https://www.encodeproject.org/files/ENCFF475IAW/@@download/ENCFF475IAW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF188GHO bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 6860119 ENCODE Processing Pipeline fd59c3000d29184e8110f9bdc7c6ecc8 https://www.encodeproject.org/files/ENCFF188GHO/@@download/ENCFF188GHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF819QEC bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 2 ENCFF357QDN, ENCFF801GGG, ENCFF881DVS 7097612 ENCODE Processing Pipeline 1164c16e05b649e5ba784c2f15a18189 https://www.encodeproject.org/files/ENCFF819QEC/@@download/ENCFF819QEC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF581CAJ bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF150NDP 6919299 ENCODE Processing Pipeline cac769629d17c55af5dcb641f96e5ec3 https://www.encodeproject.org/files/ENCFF581CAJ/@@download/ENCFF581CAJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF326RNA bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 2 ENCFF017YFK, ENCFF261DNQ, ENCFF956QBZ 5545311 ENCODE Processing Pipeline 82d0574b5b05e75ab2e3490417e6043d https://www.encodeproject.org/files/ENCFF326RNA/@@download/ENCFF326RNA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF394TJZ bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 2 ENCFF529BVI, ENCFF772FBN, ENCFF799UMW 7185318 ENCODE Processing Pipeline 6a104764cb58aa2147a1fb511325a5ac https://www.encodeproject.org/files/ENCFF394TJZ/@@download/ENCFF394TJZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF938MOR bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF037RQQ, ENCFF287SKW 6540097 ENCODE Processing Pipeline cbc8a15cdab8f4e87b0f7d36e768ecd3 https://www.encodeproject.org/files/ENCFF938MOR/@@download/ENCFF938MOR.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF619KMH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6785961 ENCODE Processing Pipeline 490afc63a5af3a432f36dcda78a69445 https://www.encodeproject.org/files/ENCFF619KMH/@@download/ENCFF619KMH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF122FWH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6858089 ENCODE Processing Pipeline 9cd613d51d776b7ba4ac1c3f13831780 https://www.encodeproject.org/files/ENCFF122FWH/@@download/ENCFF122FWH.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF432CDN bed narrowPeak peaks ENCSR590KEQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ARNT-human DNA False 2017-11-14 ENCODE 2 ENCFF592WAL, ENCFF990UBY 6786469 ENCODE Processing Pipeline 4edfb0aa2d1440a8882779dda099addf https://www.encodeproject.org/files/ENCFF432CDN/@@download/ENCFF432CDN.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF765WNF bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 2 ENCFF449NNE, ENCFF808IEJ, ENCFF999EQI 6768355 ENCODE Processing Pipeline 14566d1ce42abf4a6e38dd9c8145045b https://www.encodeproject.org/files/ENCFF765WNF/@@download/ENCFF765WNF.bed.gz hg19 released ENCFF328KFN bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 7070560 ENCODE Processing Pipeline d09fa112a2f46a52ff767bac569d3e8d https://www.encodeproject.org/files/ENCFF328KFN/@@download/ENCFF328KFN.bed.gz hg19 released ENCFF860KMP bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 6406002 ENCODE Processing Pipeline d30d79c50d0e12b2f2743ff47d3af71d https://www.encodeproject.org/files/ENCFF860KMP/@@download/ENCFF860KMP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF621XNB bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF424DRA 6680124 ENCODE Processing Pipeline af8230bb817e3ab8a4573e8c29cd5531 https://www.encodeproject.org/files/ENCFF621XNB/@@download/ENCFF621XNB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF345DIK bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 2 ENCFF132OWJ, ENCFF812MYK, ENCFF831TJC 5978713 ENCODE Processing Pipeline a57a7b2e3e30800333e3ca4060d723c6 https://www.encodeproject.org/files/ENCFF345DIK/@@download/ENCFF345DIK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF958WJN bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 5481752 ENCODE Processing Pipeline 5e55b4a47a1adfdffea227c9ea0cf556 https://www.encodeproject.org/files/ENCFF958WJN/@@download/ENCFF958WJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF524ADR bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 2 ENCFF228BXR, ENCFF420OBI, ENCFF521ZZZ 6900017 ENCODE Processing Pipeline fe9024e9b222cd67f905db8441a16dc3 https://www.encodeproject.org/files/ENCFF524ADR/@@download/ENCFF524ADR.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF860LBQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 6939738 ENCODE Processing Pipeline 2fa824b16ec57e89bc5dd1fd3a482e7e https://www.encodeproject.org/files/ENCFF860LBQ/@@download/ENCFF860LBQ.bed.gz hg19 released borderline replicate concordance ENCFF145POH bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5466977 ENCODE Processing Pipeline 24d641fb0de8cbc78252718eaaf43720 https://www.encodeproject.org/files/ENCFF145POH/@@download/ENCFF145POH.bed.gz hg19 released low read length ENCFF575MOS bed narrowPeak peaks ENCSR140DSL ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFF-human DNA False 2014-07-07 ENCODE 2 ENCFF226KER, ENCFF939XHK 5634715 ENCODE Processing Pipeline 37cdf712ea0817270071e52cbffc9b68 https://www.encodeproject.org/files/ENCFF575MOS/@@download/ENCFF575MOS.bed.gz hg19 archived low read length ENCFF396SZC bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 2 ENCFF042EJM, ENCFF588SWK, ENCFF705RUU 5685701 ENCODE Processing Pipeline db309aea66c2b0348c6e5bc81d7be171 https://www.encodeproject.org/files/ENCFF396SZC/@@download/ENCFF396SZC.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF284OML bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 2 ENCFF707LIB, ENCFF849LYY 4163465 ENCODE Processing Pipeline 16f46cbe832639a29f8cd0e8298c06a5 https://www.encodeproject.org/files/ENCFF284OML/@@download/ENCFF284OML.bed.gz hg19 released low read length, low read depth ENCFF583UDD bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 5297343 ENCODE Processing Pipeline 700e439b8337491909faa99b1dd3e5b8 https://www.encodeproject.org/files/ENCFF583UDD/@@download/ENCFF583UDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF875YEH bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF388FXV 7038756 ENCODE Processing Pipeline 4cb7fa434026190b21b35519433a772b https://www.encodeproject.org/files/ENCFF875YEH/@@download/ENCFF875YEH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF184RLT bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6445936 ENCODE Processing Pipeline 5e8bb8a3df0b18c40c7c5148f2e6e8fc https://www.encodeproject.org/files/ENCFF184RLT/@@download/ENCFF184RLT.bed.gz hg19 released antibody characterized with exemption ENCFF920MOI bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF652BBA 6599824 ENCODE Processing Pipeline 045916b3c64f2036f03faeea779d022d https://www.encodeproject.org/files/ENCFF920MOI/@@download/ENCFF920MOI.bed.gz hg19 archived antibody characterized with exemption ENCFF664JOM bed narrowPeak peaks ENCSR563FBT ChIP-seq EFO:0001086 A549 cell line Homo sapiens USF2-human DNA False 2014-07-07 ENCODE 2 ENCFF077LKL, ENCFF321TUP, ENCFF806YIH 6533698 ENCODE Processing Pipeline 8fd2f46b0bf5c1b8d5cd806a36634425 https://www.encodeproject.org/files/ENCFF664JOM/@@download/ENCFF664JOM.bed.gz hg19 released antibody characterized with exemption ENCFF870DSA bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 2 ENCFF486NOF, ENCFF901CND 7089816 ENCODE Processing Pipeline d154c929c75e48d94a7457c55991af23 https://www.encodeproject.org/files/ENCFF870DSA/@@download/ENCFF870DSA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF796TTQ bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 2 ENCFF574DLY, ENCFF753PJC 5214941 ENCODE Processing Pipeline 18ff675f5cd6f15f3b9f9575aaf4debd https://www.encodeproject.org/files/ENCFF796TTQ/@@download/ENCFF796TTQ.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF652WXC bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 6775311 ENCODE Processing Pipeline 255864953a6693c48e10c5c5811564d7 https://www.encodeproject.org/files/ENCFF652WXC/@@download/ENCFF652WXC.bed.gz hg19 released mild to moderate bottlenecking ENCFF998CHH bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 2 ENCFF049MPQ, ENCFF148ROD 6372010 ENCODE Processing Pipeline 03e5cdb6a3717f88a30ab314abbbca12 https://www.encodeproject.org/files/ENCFF998CHH/@@download/ENCFF998CHH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF282QPK bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 2 ENCFF093OXI, ENCFF257GMX, ENCFF571VVW 6982761 ENCODE Processing Pipeline 5126fbc6f3bf70276250ace9b4e7a6cf https://www.encodeproject.org/files/ENCFF282QPK/@@download/ENCFF282QPK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF924XCI bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF643GJU, ENCFF817NEK 4936186 ENCODE Processing Pipeline bebf42e412474d7e79ab36a89f60f77f https://www.encodeproject.org/files/ENCFF924XCI/@@download/ENCFF924XCI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF706LNT bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 7049612 ENCODE Processing Pipeline ff995f9cd1c55eec79946c18067b474a https://www.encodeproject.org/files/ENCFF706LNT/@@download/ENCFF706LNT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF762IGQ bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF019SDP, ENCFF580VRU, ENCFF951UMF 6133889 ENCODE Processing Pipeline 455f7d09d9e43a51a9b8f881af54cf67 https://www.encodeproject.org/files/ENCFF762IGQ/@@download/ENCFF762IGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF661PVV bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 2 ENCFF111AMD, ENCFF394XKE, ENCFF911ZWN 6303156 ENCODE Processing Pipeline 0cf7ed584eb978b0fac7b02b8d9abe17 https://www.encodeproject.org/files/ENCFF661PVV/@@download/ENCFF661PVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF606UFV bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 6919933 ENCODE Processing Pipeline a4987ffd1ba8dadf8170584cd35048f4 https://www.encodeproject.org/files/ENCFF606UFV/@@download/ENCFF606UFV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001XMA bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXC 547223 John Stamatoyannopoulos, UW 73909ab110e808d51fc2e7c5ac0716f5 https://www.encodeproject.org/files/ENCFF001XMA/@@download/ENCFF001XMA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF437UAR bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF137BYR, ENCFF217RCW 2527386 ENCODE Processing Pipeline fedd7582605f939e4bdfb8920ec183b7 https://www.encodeproject.org/files/ENCFF437UAR/@@download/ENCFF437UAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF222WLA bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 2 ENCFF098SJQ, ENCFF420OJT, ENCFF730MQF 5831402 ENCODE Processing Pipeline 292a33d074157fe9cb5d3ea74e13f18b https://www.encodeproject.org/files/ENCFF222WLA/@@download/ENCFF222WLA.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF427ZLR bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 6995668 ENCODE Processing Pipeline 4842029b3a8be15a4b00cdf1afd5c83c https://www.encodeproject.org/files/ENCFF427ZLR/@@download/ENCFF427ZLR.bed.gz hg19 released mild to moderate bottlenecking ENCFF039TLE bed narrowPeak peaks ENCSR611WZO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SREBF2-human DNA False 2014-07-07 ENCODE 2 ENCFF046BMR, ENCFF231HAE, ENCFF592OJO 7057786 ENCODE Processing Pipeline e7a48ad12d4aa555f12cff5d03654341 https://www.encodeproject.org/files/ENCFF039TLE/@@download/ENCFF039TLE.bed.gz hg19 archived mild to moderate bottlenecking ENCFF054XUN bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF225FNQ, ENCFF287SKW 6240427 ENCODE Processing Pipeline b8c9e196eda9c2502b0db38eb8279690 https://www.encodeproject.org/files/ENCFF054XUN/@@download/ENCFF054XUN.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF262ETY bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 2 ENCFF583FAG, ENCFF606MZP 5884663 ENCODE Processing Pipeline d507c4a30f1faea190971029240013df https://www.encodeproject.org/files/ENCFF262ETY/@@download/ENCFF262ETY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF419TOT bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 2 ENCFF265DDE, ENCFF341NRI, ENCFF509ZPI 5887033 ENCODE Processing Pipeline 94c7eb37f002ccaf27c39240143d1ef1 https://www.encodeproject.org/files/ENCFF419TOT/@@download/ENCFF419TOT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF648GNP bed narrowPeak peaks ENCSR936XTK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA False 2016-07-28 ENCODE 2 ENCFF287SKW, ENCFF360QES 6703968 ENCODE Processing Pipeline aeace92b89e06d209a022e199914e5ce https://www.encodeproject.org/files/ENCFF648GNP/@@download/ENCFF648GNP.bed.gz hg19 released mild to moderate bottlenecking mismatched file status ENCFF147QXV bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 2 ENCFF485QJI, ENCFF505MRY 3968880 ENCODE Processing Pipeline a478f59a397c2cf367c8b1fe97c6a924 https://www.encodeproject.org/files/ENCFF147QXV/@@download/ENCFF147QXV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF762LDF bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF335UKS, ENCFF719RCX 4135581 ENCODE Processing Pipeline 4fd1ec871d2c9fd0acf45b090d6098f8 https://www.encodeproject.org/files/ENCFF762LDF/@@download/ENCFF762LDF.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF483PBA bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 2 ENCFF387KXA, ENCFF513QSD, ENCFF762JSN 7216453 ENCODE Processing Pipeline 783ba9e8905d5f1811ca6c753333774e https://www.encodeproject.org/files/ENCFF483PBA/@@download/ENCFF483PBA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF210LCR bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 2 ENCFF265DDE, ENCFF509ZPI, ENCFF852USD 5654839 ENCODE Processing Pipeline cece85227138bed4d2e487c576138f6d https://www.encodeproject.org/files/ENCFF210LCR/@@download/ENCFF210LCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF554XAI bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 4855004 ENCODE Processing Pipeline 98de65987c0e66bbad86c88c52ff043c https://www.encodeproject.org/files/ENCFF554XAI/@@download/ENCFF554XAI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF916KLD bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 5050350 ENCODE Processing Pipeline d8a3931ec7358fc3503f9890169714fb https://www.encodeproject.org/files/ENCFF916KLD/@@download/ENCFF916KLD.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF274DVQ bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 4527559 ENCODE Processing Pipeline 989e63de6058c49c3266aaa1f69937d1 https://www.encodeproject.org/files/ENCFF274DVQ/@@download/ENCFF274DVQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF749YOZ bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 2 ENCFF049MPQ, ENCFF477KIN 5989415 ENCODE Processing Pipeline facb26d15d256bd2d8e262ea0ea238e3 https://www.encodeproject.org/files/ENCFF749YOZ/@@download/ENCFF749YOZ.bed.gz hg19 released borderline replicate concordance ENCFF270NHR bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 2 ENCFF049MPQ, ENCFF451IIX 6304161 ENCODE Processing Pipeline d90dd03b4ef3171f96100588a66cee89 https://www.encodeproject.org/files/ENCFF270NHR/@@download/ENCFF270NHR.bed.gz hg19 released low read depth ENCFF407DGA bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 2 ENCFF404RJD, ENCFF760DHW 6900090 ENCODE Processing Pipeline 9fa798e8e6d31e9ad67651403b3e07ef https://www.encodeproject.org/files/ENCFF407DGA/@@download/ENCFF407DGA.bed.gz hg19 released ENCFF689XKH bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 2 ENCFF447KVS, ENCFF823USR, ENCFF929KZG 6741876 ENCODE Processing Pipeline 1503f8030056b359c7018fdb7ec6f49c https://www.encodeproject.org/files/ENCFF689XKH/@@download/ENCFF689XKH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF740DFA bed narrowPeak peaks ENCSR912ATU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-11-13 ENCODE 2 ENCFF049MPQ, ENCFF838ZQW 6221097 ENCODE Processing Pipeline a670810c359adfc69ab1acb6b56dbe77 https://www.encodeproject.org/files/ENCFF740DFA/@@download/ENCFF740DFA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF015RED bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF959KSA 6222237 ENCODE Processing Pipeline 7ccc53751ec7dd1c471fe8c24e31311a https://www.encodeproject.org/files/ENCFF015RED/@@download/ENCFF015RED.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF637CIX bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 2 ENCFF287SKW, ENCFF746YDX 7177132 ENCODE Processing Pipeline b0429ae29455c952bff9b5a57d7585e6 https://www.encodeproject.org/files/ENCFF637CIX/@@download/ENCFF637CIX.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF522TKF bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 2 ENCFF485QJI, ENCFF677SXP 4919084 ENCODE Processing Pipeline 97ff9851e73b8907f9b194f29be041da https://www.encodeproject.org/files/ENCFF522TKF/@@download/ENCFF522TKF.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF802MWF bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 6807370 ENCODE Processing Pipeline b4209d28352bb320a3f5260cf60d74b3 https://www.encodeproject.org/files/ENCFF802MWF/@@download/ENCFF802MWF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF715GDR bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 2 ENCFF339RIH, ENCFF529BVI, ENCFF772FBN 6422534 ENCODE Processing Pipeline 87c2f5b6dbe5f2b3879757ffb220fbf7 https://www.encodeproject.org/files/ENCFF715GDR/@@download/ENCFF715GDR.bed.gz hg19 released mild to moderate bottlenecking ENCFF283OGT bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 2 ENCFF004XDI, ENCFF396EHK, ENCFF602DKP 6912537 ENCODE Processing Pipeline 4247ed24024f4c1a5c5128388126f2a1 https://www.encodeproject.org/files/ENCFF283OGT/@@download/ENCFF283OGT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF247RAX bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF006HDB, ENCFF136WLN, ENCFF357UZL 7019787 ENCODE Processing Pipeline c551f013dad997bd272a6f5374d96e56 https://www.encodeproject.org/files/ENCFF247RAX/@@download/ENCFF247RAX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF385LTD bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 7102147 ENCODE Processing Pipeline fd18be84207ef924b9342b60af421079 https://www.encodeproject.org/files/ENCFF385LTD/@@download/ENCFF385LTD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF959JZX bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5603245 ENCODE Processing Pipeline 19e02c2d6f1085dfc408eb2710934272 https://www.encodeproject.org/files/ENCFF959JZX/@@download/ENCFF959JZX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF619OWB bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 2 ENCFF287SKW, ENCFF481EUA 5786788 ENCODE Processing Pipeline aa8a31c877313a6f0bdb97e87a00a5f8 https://www.encodeproject.org/files/ENCFF619OWB/@@download/ENCFF619OWB.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF376IUM bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 6928265 ENCODE Processing Pipeline e5d4a150f21727fc54d1e0fc0c0ac2e9 https://www.encodeproject.org/files/ENCFF376IUM/@@download/ENCFF376IUM.bed.gz hg19 released ENCFF361MVW bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 2 ENCFF049MPQ, ENCFF114GGP, ENCFF583FAG 7008093 ENCODE Processing Pipeline 99d5dedef33c69294237b20506127214 https://www.encodeproject.org/files/ENCFF361MVW/@@download/ENCFF361MVW.bed.gz hg19 archived ENCFF686QQS bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 2 ENCFF135DLX, ENCFF999EQI 6223707 ENCODE Processing Pipeline 8f075c19e6cb6fdfc26ea1a2932726d1 https://www.encodeproject.org/files/ENCFF686QQS/@@download/ENCFF686QQS.bed.gz hg19 released ENCFF491JFL bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF361MQC, ENCFF654EHF, ENCFF991UTU 6653476 ENCODE Processing Pipeline 8cae86c49ce3f5f045310de13afc7dee https://www.encodeproject.org/files/ENCFF491JFL/@@download/ENCFF491JFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF517GNM bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 2 ENCFF554EXS, ENCFF654EHF, ENCFF991UTU 6782982 ENCODE Processing Pipeline 19b75432199988920527c7bf357bc5aa https://www.encodeproject.org/files/ENCFF517GNM/@@download/ENCFF517GNM.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF357OAA bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 5760292 ENCODE Processing Pipeline 57cd23fbb6807ef1926017cdddb8efac https://www.encodeproject.org/files/ENCFF357OAA/@@download/ENCFF357OAA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF705MDG bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 3785736 ENCODE Processing Pipeline 6905e36337bfbfc3113c08a7dce94ecd https://www.encodeproject.org/files/ENCFF705MDG/@@download/ENCFF705MDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF458DFL bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 2 ENCFF072HUA, ENCFF654EHF, ENCFF991UTU 6376793 ENCODE Processing Pipeline f94c47f74adfa13548a2c652b02b6dab https://www.encodeproject.org/files/ENCFF458DFL/@@download/ENCFF458DFL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF351PGN bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 2 ENCFF583FAG, ENCFF874XYT 6677591 ENCODE Processing Pipeline 544d520441bbeb7d2df6d5c9a665e174 https://www.encodeproject.org/files/ENCFF351PGN/@@download/ENCFF351PGN.bed.gz hg19 released ENCFF794UGE bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 2 ENCFF029BWR, ENCFF049MPQ 6302812 ENCODE Processing Pipeline 2eecbac37afa9869718ab7bf8dec9b34 https://www.encodeproject.org/files/ENCFF794UGE/@@download/ENCFF794UGE.bed.gz hg19 released ENCFF624XKD bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 2 ENCFF270HZT, ENCFF359TIO 6725905 ENCODE Processing Pipeline 3517b46ca96b254234976888869e2bfa https://www.encodeproject.org/files/ENCFF624XKD/@@download/ENCFF624XKD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF479KRR bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 2 ENCFF366XGP, ENCFF650GFB 6012983 ENCODE Processing Pipeline cbcd47fed40f04880ccb0d8d69aff45b https://www.encodeproject.org/files/ENCFF479KRR/@@download/ENCFF479KRR.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF973PJK bed narrowPeak peaks ENCSR541WQI ChIP-seq EFO:0001086 A549 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 2 ENCFF321TUP, ENCFF803KOJ, ENCFF806YIH 6900096 ENCODE Processing Pipeline 5985a37d51c949670a0adea792b890bf https://www.encodeproject.org/files/ENCFF973PJK/@@download/ENCFF973PJK.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF125NRW bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 2 ENCFF492TFL 6990992 ENCODE Processing Pipeline 371e0ca64207e44d71940416a8b89106 https://www.encodeproject.org/files/ENCFF125NRW/@@download/ENCFF125NRW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF848FMM bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 2 ENCFF050WDN, ENCFF228HDI, ENCFF238MHO 6997649 ENCODE Processing Pipeline 98c3da9f35a16790aaebe52c53b2c120 https://www.encodeproject.org/files/ENCFF848FMM/@@download/ENCFF848FMM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF040XUI bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 2 ENCFF110XXU, ENCFF604AUO, ENCFF989ZJD 6747781 ENCODE Processing Pipeline 7f0f219157010c15dacec296cb2c94b3 https://www.encodeproject.org/files/ENCFF040XUI/@@download/ENCFF040XUI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF253SCW bed narrowPeak peaks ENCSR422ZAO ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens IRF3-human DNA False 2016-11-10 ENCODE 2 ENCFF588CRQ, ENCFF650GFB 44847 ENCODE Processing Pipeline 843ee65dfa4f255e2a5ff48b9607f3b8 https://www.encodeproject.org/files/ENCFF253SCW/@@download/ENCFF253SCW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF314VOK bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 2 ENCFF645WBK, ENCFF807CUF 5215902 ENCODE Processing Pipeline ee39665b68439cbcca6045dff206b554 https://www.encodeproject.org/files/ENCFF314VOK/@@download/ENCFF314VOK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF073ACH bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF659YOC 3922214 ENCODE Processing Pipeline 2b9a98a9a0cbf2ae45dce3d7570c0950 https://www.encodeproject.org/files/ENCFF073ACH/@@download/ENCFF073ACH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF372FLW bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF837IOW, ENCFF918QFL 4179024 ENCODE Processing Pipeline 4e94740b37fb8b99b7d324eb3fb75d00 https://www.encodeproject.org/files/ENCFF372FLW/@@download/ENCFF372FLW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF236WSQ bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 2 ENCFF415ELX, ENCFF935ZWS 6119134 ENCODE Processing Pipeline e972082cf7848136ad3c323f39055b78 https://www.encodeproject.org/files/ENCFF236WSQ/@@download/ENCFF236WSQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF649MCA bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 2 ENCFF108FPL, ENCFF552ZAM, ENCFF969DYI 6570142 ENCODE Processing Pipeline f9e2d5a849ef987451e1e89cff10606c https://www.encodeproject.org/files/ENCFF649MCA/@@download/ENCFF649MCA.bed.gz hg19 released antibody characterized with exemption ENCFF079EBS bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 2 ENCFF467TEV, ENCFF529BVI, ENCFF772FBN 6826910 ENCODE Processing Pipeline c897f38b7bcc14db5ddfddd58e96799d https://www.encodeproject.org/files/ENCFF079EBS/@@download/ENCFF079EBS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001XQE bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HKP 800970 John Stamatoyannopoulos, UW d3a793e194cd93b043a032662f5878b1 https://www.encodeproject.org/files/ENCFF001XQE/@@download/ENCFF001XQE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF883SBZ bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF234EAH, ENCFF650OIZ 4460441 ENCODE Processing Pipeline dc4d73cbe139008389921ec6d1eb8947 https://www.encodeproject.org/files/ENCFF883SBZ/@@download/ENCFF883SBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF487XXM bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF037EJX, ENCFF502MJK 4523226 ENCODE Processing Pipeline 38acfad5c6be9b3c04af5cdaa4d262e7 https://www.encodeproject.org/files/ENCFF487XXM/@@download/ENCFF487XXM.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF827YDE bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 2 ENCFF043VGV, ENCFF049MPQ, ENCFF583FAG 6689916 ENCODE Processing Pipeline 9fe76792210b133665f8baba5162d01a https://www.encodeproject.org/files/ENCFF827YDE/@@download/ENCFF827YDE.bed.gz hg19 released borderline replicate concordance ENCFF608NEP bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF548BKE 4452905 ENCODE Processing Pipeline 8bd9d8817d8c4732aaaecb92aa78176b https://www.encodeproject.org/files/ENCFF608NEP/@@download/ENCFF608NEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF705JDO bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF235OMO, ENCFF448PML, ENCFF568IYC 3000827 ENCODE Processing Pipeline 7b3b2e82e8ac84f8073e7731a6a0bf29 https://www.encodeproject.org/files/ENCFF705JDO/@@download/ENCFF705JDO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF627NVL bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 6612322 ENCODE Processing Pipeline c94f36c4657842187a9a2e757738c0f2 https://www.encodeproject.org/files/ENCFF627NVL/@@download/ENCFF627NVL.bed.gz hg19 released antibody characterized with exemption ENCFF804LKJ bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF187YDX, ENCFF837IOW 1207971 ENCODE Processing Pipeline ba9d4821757dea35896c8804bb35174c https://www.encodeproject.org/files/ENCFF804LKJ/@@download/ENCFF804LKJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF596YYO bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 6691760 ENCODE Processing Pipeline 21e99697f4e8c0277093c77dc32879dc https://www.encodeproject.org/files/ENCFF596YYO/@@download/ENCFF596YYO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF929FJI bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 5900193 ENCODE Processing Pipeline cfbcf03baa291b99beb93586aa3f37cd https://www.encodeproject.org/files/ENCFF929FJI/@@download/ENCFF929FJI.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF408TRC bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 4419284 ENCODE Processing Pipeline 5feca8703d12480c372660f58565d18a https://www.encodeproject.org/files/ENCFF408TRC/@@download/ENCFF408TRC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF046WGV bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF737NXE 4561903 ENCODE Processing Pipeline ef41780b200cca0f8494cd0f0966947e https://www.encodeproject.org/files/ENCFF046WGV/@@download/ENCFF046WGV.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF336UZW bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 4384689 ENCODE Processing Pipeline f9bf48178659d146a8e8aa48aae8e4c9 https://www.encodeproject.org/files/ENCFF336UZW/@@download/ENCFF336UZW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF371XXQ bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF535SPI, ENCFF864UEQ 4741604 ENCODE Processing Pipeline a8482b3e486619615fa68bf6cf9504ed https://www.encodeproject.org/files/ENCFF371XXQ/@@download/ENCFF371XXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF213KTM bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF613UOL, ENCFF864UEQ 6181362 ENCODE Processing Pipeline 4e38e53568c072d11b308794448f527e https://www.encodeproject.org/files/ENCFF213KTM/@@download/ENCFF213KTM.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF001XSI bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRS 739159 John Stamatoyannopoulos, UW 8e787dcbcdc51b6995672783275ae189 https://www.encodeproject.org/files/ENCFF001XSI/@@download/ENCFF001XSI.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF695UND bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF831AXW, ENCFF919KWN 4061971 ENCODE Processing Pipeline ffd4adf0bdeb412ece0eb94210206d9e https://www.encodeproject.org/files/ENCFF695UND/@@download/ENCFF695UND.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF241JSX bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF599MVB, ENCFF934ZAX 4457180 ENCODE Processing Pipeline 30394c45d8ebe0da11c915fa8516c3cd https://www.encodeproject.org/files/ENCFF241JSX/@@download/ENCFF241JSX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRI bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HOK 628952 John Stamatoyannopoulos, UW fc8449d17a3d6ee29ddeae78fd707736 https://www.encodeproject.org/files/ENCFF001XRI/@@download/ENCFF001XRI.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF777FSS bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF198DHL, ENCFF580BHF 4461725 ENCODE Processing Pipeline b783794844073f2d6fd7f91e69bd81a2 https://www.encodeproject.org/files/ENCFF777FSS/@@download/ENCFF777FSS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF376SMA bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF080EVD, ENCFF541WKG 4536576 ENCODE Processing Pipeline 33699052c085da46547cf24d1246a236 https://www.encodeproject.org/files/ENCFF376SMA/@@download/ENCFF376SMA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF374LID bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF514GQU 5018599 ENCODE Processing Pipeline 16f6924aa2674726dc14313b2a69856d https://www.encodeproject.org/files/ENCFF374LID/@@download/ENCFF374LID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF552ZAY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 5439753 ENCODE Processing Pipeline cd17067a85d52f2050be5d06ce0f6a33 https://www.encodeproject.org/files/ENCFF552ZAY/@@download/ENCFF552ZAY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF654AYS bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF426NNP 5190525 ENCODE Processing Pipeline 22b797f93b9ba6e5c6e378848d333642 https://www.encodeproject.org/files/ENCFF654AYS/@@download/ENCFF654AYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF667ZFL bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF481XFG, ENCFF509ANO 1433441 ENCODE Processing Pipeline bcba2ec36ba11c4c1df173dd311fdc03 https://www.encodeproject.org/files/ENCFF667ZFL/@@download/ENCFF667ZFL.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF805KEB bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 6635169 ENCODE Processing Pipeline 45e1425a9acf2feddb601a4f89b81aae https://www.encodeproject.org/files/ENCFF805KEB/@@download/ENCFF805KEB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF716DUT bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 2 ENCFF425JYG, ENCFF488TLJ 4179753 ENCODE Processing Pipeline fca7441aee74fefffdd6b17704e8539d https://www.encodeproject.org/files/ENCFF716DUT/@@download/ENCFF716DUT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF306BBY bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF288XGA, ENCFF963CVB 2985778 ENCODE Processing Pipeline c46c23e747f2bc9a1837549baa2c03be https://www.encodeproject.org/files/ENCFF306BBY/@@download/ENCFF306BBY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF249GYD bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 6794677 ENCODE Processing Pipeline 399ad20964e01340f9aea8e025cbfd10 https://www.encodeproject.org/files/ENCFF249GYD/@@download/ENCFF249GYD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF010JFS bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF174UCM, ENCFF279XQE 3817595 ENCODE Processing Pipeline d047b2eb22a8539fbf3fde04c865fb9b https://www.encodeproject.org/files/ENCFF010JFS/@@download/ENCFF010JFS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF976XOX bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 2 ENCFF513LAW, ENCFF768AST 5924813 ENCODE Processing Pipeline f22dcb61a0016c56b736f22c2f872fa0 https://www.encodeproject.org/files/ENCFF976XOX/@@download/ENCFF976XOX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF270GEP bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 2 ENCFF275QSN, ENCFF509LLL 6502238 ENCODE Processing Pipeline 1b0d77e557090a061c18c37c34f975a4 https://www.encodeproject.org/files/ENCFF270GEP/@@download/ENCFF270GEP.bed.gz hg19 released missing genetic modification characterization ENCFF113YPN bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532CDZ, ENCFF545DZO 4140241 ENCODE Processing Pipeline 0a19fc910c0bb468dd11d35c927acbc9 https://www.encodeproject.org/files/ENCFF113YPN/@@download/ENCFF113YPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF623RZZ bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF742LFF 4254752 ENCODE Processing Pipeline 092ea79f244ee5ddb6ced344bbeed5d4 https://www.encodeproject.org/files/ENCFF623RZZ/@@download/ENCFF623RZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF001XPU bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIZ 597292 John Stamatoyannopoulos, UW 154cd03f8564b69afd2fab7b0e276f47 https://www.encodeproject.org/files/ENCFF001XPU/@@download/ENCFF001XPU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF892VYV bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF600BAG, ENCFF686TPQ 4129203 ENCODE Processing Pipeline 02dc4390a46ee6a4603e44c91ca1a5b8 https://www.encodeproject.org/files/ENCFF892VYV/@@download/ENCFF892VYV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF041YJV bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 4305604 ENCODE Processing Pipeline 2371b94b7137fd7a56b567acc2631c85 https://www.encodeproject.org/files/ENCFF041YJV/@@download/ENCFF041YJV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF835YPT bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF074APO, ENCFF424BXF 5309313 ENCODE Processing Pipeline 414de378a66450e2030c2242e0d93478 https://www.encodeproject.org/files/ENCFF835YPT/@@download/ENCFF835YPT.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF613VCR bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF210YHD, ENCFF416BIN, ENCFF818ZLY 5316251 ENCODE Processing Pipeline 633f1f5876b47332344eb8962527dba3 https://www.encodeproject.org/files/ENCFF613VCR/@@download/ENCFF613VCR.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF698OHI bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF244KNV 4780880 ENCODE Processing Pipeline 1c474626f3dbae0db69c999f058e939f https://www.encodeproject.org/files/ENCFF698OHI/@@download/ENCFF698OHI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF251GTF bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF793JQM 4431043 ENCODE Processing Pipeline e3de3a2947ccf509e7c2778d2a69d2b3 https://www.encodeproject.org/files/ENCFF251GTF/@@download/ENCFF251GTF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF973NBX bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF236GMW, ENCFF420MOQ 3997830 ENCODE Processing Pipeline 03cc4cb6dd5e79225c390245c59eeb18 https://www.encodeproject.org/files/ENCFF973NBX/@@download/ENCFF973NBX.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF980AUY bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF659SUJ, ENCFF963CVB 4272041 ENCODE Processing Pipeline b08b9732fcd3e20e5a40be4fd0ac8b01 https://www.encodeproject.org/files/ENCFF980AUY/@@download/ENCFF980AUY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF682QML bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF353IXR, ENCFF472OOV 5488677 ENCODE Processing Pipeline 717ad779934529bd287c92f81fe4c406 https://www.encodeproject.org/files/ENCFF682QML/@@download/ENCFF682QML.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF731UAI bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF856ODM 4929718 ENCODE Processing Pipeline c139685c51c08d40e6c3ea5c3a76aa7a https://www.encodeproject.org/files/ENCFF731UAI/@@download/ENCFF731UAI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF497YWO bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF038LCM, ENCFF191DFR, ENCFF601AUG 5439096 ENCODE Processing Pipeline a6f6f6bccba3d8c632d1487bb6dfd303 https://www.encodeproject.org/files/ENCFF497YWO/@@download/ENCFF497YWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPE bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HGS 748948 John Stamatoyannopoulos, UW f1a2ff887e4b39e4ce138baf528eb617 https://www.encodeproject.org/files/ENCFF001XPE/@@download/ENCFF001XPE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF961AGO bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF035XEM, ENCFF331ASK 3061731 ENCODE Processing Pipeline 1286158fe09ccb9c0f1f96eb46c1328a https://www.encodeproject.org/files/ENCFF961AGO/@@download/ENCFF961AGO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF491NVT bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797IAR, ENCFF837IOW 3572166 ENCODE Processing Pipeline d1a1faae16d72d91b8f0943e4b26cd96 https://www.encodeproject.org/files/ENCFF491NVT/@@download/ENCFF491NVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF015WVN bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF062WDT, ENCFF840LUZ, ENCFF903ATW 6433501 ENCODE Processing Pipeline 79fc95fda12d15573ae2289cdf4d9dbf https://www.encodeproject.org/files/ENCFF015WVN/@@download/ENCFF015WVN.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF599SPU bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 5291266 ENCODE Processing Pipeline cb06ef30f1d113827a464623c4fefc29 https://www.encodeproject.org/files/ENCFF599SPU/@@download/ENCFF599SPU.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF252RWC bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF512AMK, ENCFF837IOW 4449893 ENCODE Processing Pipeline e6409899363ddd545604df6c4df87440 https://www.encodeproject.org/files/ENCFF252RWC/@@download/ENCFF252RWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF556COW bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF488IBU, ENCFF864UEQ 6206995 ENCODE Processing Pipeline c72a2419addc25c2b95728a215891382 https://www.encodeproject.org/files/ENCFF556COW/@@download/ENCFF556COW.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF655RQF bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF415RJB 4751401 ENCODE Processing Pipeline 3998549b09b59c038386bb2da2c79f54 https://www.encodeproject.org/files/ENCFF655RQF/@@download/ENCFF655RQF.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF912FKQ bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF159NGH, ENCFF864UEQ 6262075 ENCODE Processing Pipeline 95169f0673261acf640639a0818357cb https://www.encodeproject.org/files/ENCFF912FKQ/@@download/ENCFF912FKQ.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF621APS bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF515SHZ, ENCFF864UEQ 6607489 ENCODE Processing Pipeline 6f520fce44fd1e0abc7a68dc3026de6c https://www.encodeproject.org/files/ENCFF621APS/@@download/ENCFF621APS.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF081YAN bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 2161600 ENCODE Processing Pipeline 2ff4a5f8741d7d3809aec33b42266ba6 https://www.encodeproject.org/files/ENCFF081YAN/@@download/ENCFF081YAN.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF895CZK bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF122FZS, ENCFF277EKP, ENCFF902HRT 4181922 ENCODE Processing Pipeline ad7f0547a5ed89ad349a14a94217883e https://www.encodeproject.org/files/ENCFF895CZK/@@download/ENCFF895CZK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF605IMH bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF540RWT, ENCFF879AJU 4607785 ENCODE Processing Pipeline 1344f2b1b6e3a6c9ab3165215b3a5777 https://www.encodeproject.org/files/ENCFF605IMH/@@download/ENCFF605IMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF327TVJ bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF466SFU 4525639 ENCODE Processing Pipeline 74e9a09fbfe54eeeb20ac00a4e971cb3 https://www.encodeproject.org/files/ENCFF327TVJ/@@download/ENCFF327TVJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF672PNA bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585DEP 4917223 ENCODE Processing Pipeline 7654776b88aab9314ce3f5aba831b791 https://www.encodeproject.org/files/ENCFF672PNA/@@download/ENCFF672PNA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF354WUJ bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF899LXA 4280947 ENCODE Processing Pipeline d8616dc3b56920001156e632fefd5187 https://www.encodeproject.org/files/ENCFF354WUJ/@@download/ENCFF354WUJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF324CAS bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 4508322 ENCODE Processing Pipeline ddf087dc114613cea7315d513568c461 https://www.encodeproject.org/files/ENCFF324CAS/@@download/ENCFF324CAS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF505EIB bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 4219487 ENCODE Processing Pipeline de5e49bbd51ef4840243072ad43be632 https://www.encodeproject.org/files/ENCFF505EIB/@@download/ENCFF505EIB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF700LQD bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF792OIY 5200460 ENCODE Processing Pipeline 79c1c36e79ee772a25be1d5be862c523 https://www.encodeproject.org/files/ENCFF700LQD/@@download/ENCFF700LQD.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF022KXM bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF386AHN, ENCFF416BIN, ENCFF818ZLY 3498445 ENCODE Processing Pipeline 4b1b0e06c290e3bfc70d0f2098bcde1d https://www.encodeproject.org/files/ENCFF022KXM/@@download/ENCFF022KXM.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF436OWU bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF800DLO, ENCFF963CVB 4403785 ENCODE Processing Pipeline a895db5e73e2acf0e8b09774027faccb https://www.encodeproject.org/files/ENCFF436OWU/@@download/ENCFF436OWU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF791JVM bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF445HFT 5003262 ENCODE Processing Pipeline 9a625b4583baf5c6496dae9bd382d937 https://www.encodeproject.org/files/ENCFF791JVM/@@download/ENCFF791JVM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF003WYE bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 1121347 ENCODE Processing Pipeline 0075b41ce937ac2948c49cd47fa765f0 https://www.encodeproject.org/files/ENCFF003WYE/@@download/ENCFF003WYE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF854CCF bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 6238769 ENCODE Processing Pipeline 31834bde4e421dc304e7711837e58986 https://www.encodeproject.org/files/ENCFF854CCF/@@download/ENCFF854CCF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF178ANU bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 4771447 ENCODE Processing Pipeline c491087f20ab9c04bfa876874b59502c https://www.encodeproject.org/files/ENCFF178ANU/@@download/ENCFF178ANU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF430QIK bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF267FMB, ENCFF329PQZ, ENCFF378YAW 4342082 ENCODE Processing Pipeline 0e2141abcbdb75330819f35685b60e9f https://www.encodeproject.org/files/ENCFF430QIK/@@download/ENCFF430QIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF364ZNH bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF532FFM 6055180 ENCODE Processing Pipeline ce2481f4145bcc55f98f59538fd69b39 https://www.encodeproject.org/files/ENCFF364ZNH/@@download/ENCFF364ZNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF780CML bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF314ZWW, ENCFF965VPN 3514368 ENCODE Processing Pipeline 3cd259133842ffbef6039da97281c1c6 https://www.encodeproject.org/files/ENCFF780CML/@@download/ENCFF780CML.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF912AHN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 4867217 ENCODE Processing Pipeline 9166549a0bef72476e102ad417f38e98 https://www.encodeproject.org/files/ENCFF912AHN/@@download/ENCFF912AHN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF720DVS bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5822760 ENCODE Processing Pipeline a211c953b14fb046093aa85149bb2475 https://www.encodeproject.org/files/ENCFF720DVS/@@download/ENCFF720DVS.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF003GUP bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF513YON 5236960 ENCODE Processing Pipeline 3479a76d6597c1dd5332a56411676510 https://www.encodeproject.org/files/ENCFF003GUP/@@download/ENCFF003GUP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF341DDR bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF470HDG, ENCFF602XLT 5781698 ENCODE Processing Pipeline c7a62f66f629504ab98163e2610b1032 https://www.encodeproject.org/files/ENCFF341DDR/@@download/ENCFF341DDR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF372ATJ bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF698QEQ, ENCFF960JYT 3668176 ENCODE Processing Pipeline 496295e76a9b26bbb35963b6f863572e https://www.encodeproject.org/files/ENCFF372ATJ/@@download/ENCFF372ATJ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF913KLO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 4952514 ENCODE Processing Pipeline b06fec22d524fcd17581a927c4a190ca https://www.encodeproject.org/files/ENCFF913KLO/@@download/ENCFF913KLO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF203YKR bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF205KMO, ENCFF709NTI 2689037 ENCODE Processing Pipeline 5fffe610aa44186236fc8d6eecd9581a https://www.encodeproject.org/files/ENCFF203YKR/@@download/ENCFF203YKR.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF423EOR bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF433HND, ENCFF545DZO 3484431 ENCODE Processing Pipeline 7f0774c94b185ffe04909390f2470dbf https://www.encodeproject.org/files/ENCFF423EOR/@@download/ENCFF423EOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427RBA bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF305SDG, ENCFF781XST 1343735 ENCODE Processing Pipeline 1bd02cf16715bd189abc6a24d0859a05 https://www.encodeproject.org/files/ENCFF427RBA/@@download/ENCFF427RBA.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF001XSA bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQU 720827 John Stamatoyannopoulos, UW 4f3ab5ae1b6b2c1fecb823ebb5292428 https://www.encodeproject.org/files/ENCFF001XSA/@@download/ENCFF001XSA.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF129FBO bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF138KCG, ENCFF162OTW 4341715 ENCODE Processing Pipeline e0e094e56cd99e7dd5ecfd67f77b2ffd https://www.encodeproject.org/files/ENCFF129FBO/@@download/ENCFF129FBO.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF414JVR bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF081GVK, ENCFF334MOO, ENCFF346RZT 4384725 ENCODE Processing Pipeline 18fe1deb7a669f58ae85617cf18aa232 https://www.encodeproject.org/files/ENCFF414JVR/@@download/ENCFF414JVR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF637UCH bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF909PBK 4129954 ENCODE Processing Pipeline 57d7a5c17ad4e34839c687283c055542 https://www.encodeproject.org/files/ENCFF637UCH/@@download/ENCFF637UCH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF754FCZ bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF362KQB 3596762 ENCODE Processing Pipeline 9508e5a11ebc957a6811d300eb0de39f https://www.encodeproject.org/files/ENCFF754FCZ/@@download/ENCFF754FCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF307XCC bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF481VJG, ENCFF737EOY 3128817 ENCODE Processing Pipeline 68dd84671ebfd6108b3d782fffa3f26b https://www.encodeproject.org/files/ENCFF307XCC/@@download/ENCFF307XCC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF063ECO bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF661CVS 3547313 ENCODE Processing Pipeline c74221405b0d14a76020741da11f2479 https://www.encodeproject.org/files/ENCFF063ECO/@@download/ENCFF063ECO.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF378GKG bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF957MQC 6546881 ENCODE Processing Pipeline f62beb40d570ace6d8f3c26e2bfaa89a https://www.encodeproject.org/files/ENCFF378GKG/@@download/ENCFF378GKG.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF819FYL bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF479DQX, ENCFF502MJK 5278296 ENCODE Processing Pipeline e2fd27250b0ef4cbbb716dc934cd3858 https://www.encodeproject.org/files/ENCFF819FYL/@@download/ENCFF819FYL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF287ZJM bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF384OAK 5518419 ENCODE Processing Pipeline 1b3202e768c3b13ce0e69e55fa167b41 https://www.encodeproject.org/files/ENCFF287ZJM/@@download/ENCFF287ZJM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF290ZCZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF020BND, ENCFF021FUK 5501934 ENCODE Processing Pipeline 718d5d96ee866e35d369284b0441b07e https://www.encodeproject.org/files/ENCFF290ZCZ/@@download/ENCFF290ZCZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF961BTT bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113EJS, ENCFF599MVB 3931940 ENCODE Processing Pipeline 5d522ae4533452d1ed414a2fe30cb6d0 https://www.encodeproject.org/files/ENCFF961BTT/@@download/ENCFF961BTT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF846OWC bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF613XRK 4757605 ENCODE Processing Pipeline ed6a140c69c05c75efb8ca7fcab3a261 https://www.encodeproject.org/files/ENCFF846OWC/@@download/ENCFF846OWC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF084XPA bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF089LSW, ENCFF356DXM 4801634 ENCODE Processing Pipeline 4922ff395d00f92548c39d35d3cce488 https://www.encodeproject.org/files/ENCFF084XPA/@@download/ENCFF084XPA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF173DKW bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF892REX 4426090 ENCODE Processing Pipeline 2378c3ce38deeb7f33867522ea39af65 https://www.encodeproject.org/files/ENCFF173DKW/@@download/ENCFF173DKW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XMI bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYE 845639 John Stamatoyannopoulos, UW 9d613fc37537831c5d4a421627d5acea https://www.encodeproject.org/files/ENCFF001XMI/@@download/ENCFF001XMI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF934ZVZ bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF060TFC, ENCFF068EQL 4346550 ENCODE Processing Pipeline 04397c841d1f7771cf3c71015a08840e https://www.encodeproject.org/files/ENCFF934ZVZ/@@download/ENCFF934ZVZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF966VOH bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF585QSQ 4265470 ENCODE Processing Pipeline e94e9ea4c5ead089d95cb4e220ffb26e https://www.encodeproject.org/files/ENCFF966VOH/@@download/ENCFF966VOH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330XDW bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF420MOQ, ENCFF507DXP 4789023 ENCODE Processing Pipeline dc036f29a85e560071e4222c704640c3 https://www.encodeproject.org/files/ENCFF330XDW/@@download/ENCFF330XDW.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF337RTD bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 4049903 ENCODE Processing Pipeline 34a201468fe2cc830b77ab03cb4dab1e https://www.encodeproject.org/files/ENCFF337RTD/@@download/ENCFF337RTD.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF348XCJ bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 2 ENCFF254PCL, ENCFF425JYG 4374404 ENCODE Processing Pipeline 028dfc7d3c179772454c32926f7257ea https://www.encodeproject.org/files/ENCFF348XCJ/@@download/ENCFF348XCJ.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF114SKT bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF987ZHK 4964017 ENCODE Processing Pipeline 14e30d209048f8c2a2b76dbea75f6a35 https://www.encodeproject.org/files/ENCFF114SKT/@@download/ENCFF114SKT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF027ZKP bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF797XWM 3990972 ENCODE Processing Pipeline 9fc4e54229d238b968ec7f8905b0b566 https://www.encodeproject.org/files/ENCFF027ZKP/@@download/ENCFF027ZKP.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF814FEG bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF141XQF, ENCFF356DXM 4950981 ENCODE Processing Pipeline 12b39634b32096304bc95edd7e8d61cc https://www.encodeproject.org/files/ENCFF814FEG/@@download/ENCFF814FEG.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF872MXG bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF096MNC, ENCFF108EFL 2783118 ENCODE Processing Pipeline daf430579c8509a224986a7ce42ca662 https://www.encodeproject.org/files/ENCFF872MXG/@@download/ENCFF872MXG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF477NKZ bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF374UFJ 5557576 ENCODE Processing Pipeline bffafc095efd7e2bcf6c9fb193ef26b4 https://www.encodeproject.org/files/ENCFF477NKZ/@@download/ENCFF477NKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF570CST bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF352NJI 3984799 ENCODE Processing Pipeline 69bb711c8f182fb057f23125c2984743 https://www.encodeproject.org/files/ENCFF570CST/@@download/ENCFF570CST.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF755NTM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 4992247 ENCODE Processing Pipeline 50117195db5af85c352e3c74b5c52af5 https://www.encodeproject.org/files/ENCFF755NTM/@@download/ENCFF755NTM.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614RPL bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 4859422 ENCODE Processing Pipeline c2be15b33254bff97f9bbe443bdf3db2 https://www.encodeproject.org/files/ENCFF614RPL/@@download/ENCFF614RPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF041POZ bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 2532916 ENCODE Processing Pipeline adf8683858265f42f5494538a255772b https://www.encodeproject.org/files/ENCFF041POZ/@@download/ENCFF041POZ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF367HPL bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 5543746 ENCODE Processing Pipeline f1705fbca0567dced7c801e7385cff4e https://www.encodeproject.org/files/ENCFF367HPL/@@download/ENCFF367HPL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF304VXR bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 2 ENCFF019XCK, ENCFF513ZBH, ENCFF777FIV 5449410 ENCODE Processing Pipeline 7960ea0f8df0aa0ce24f114984592100 https://www.encodeproject.org/files/ENCFF304VXR/@@download/ENCFF304VXR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF252ZSU bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF059RHP, ENCFF963CVB 3940300 ENCODE Processing Pipeline b4629a0f7ba60e27d60aa449fb412dbf https://www.encodeproject.org/files/ENCFF252ZSU/@@download/ENCFF252ZSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF235LAV bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF343RXC, ENCFF356DXM 4421970 ENCODE Processing Pipeline cdf743e9c35656e9ef860b647ccac743 https://www.encodeproject.org/files/ENCFF235LAV/@@download/ENCFF235LAV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF680TFE bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 2 ENCFF222SPO, ENCFF650GFB 35461 ENCODE Processing Pipeline 467e98fe012f764f3105973c6d6244b0 https://www.encodeproject.org/files/ENCFF680TFE/@@download/ENCFF680TFE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF063HEH bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 3839966 ENCODE Processing Pipeline ffad26b8cc4cbfb3dcaa7882c1958b37 https://www.encodeproject.org/files/ENCFF063HEH/@@download/ENCFF063HEH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF787CXT bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF297IQJ, ENCFF892JNF 3443460 ENCODE Processing Pipeline 0cf91c4f6235aa79d074109821553f4e https://www.encodeproject.org/files/ENCFF787CXT/@@download/ENCFF787CXT.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF660LCY bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF425RUE, ENCFF495TVZ 5776906 ENCODE Processing Pipeline 9613132234e18a13ba2472b1490ad3dc https://www.encodeproject.org/files/ENCFF660LCY/@@download/ENCFF660LCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF730GTB bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF338MLT, ENCFF599MVB 4919522 ENCODE Processing Pipeline d96c7fbafbba39aed2bcba1c4d7bf41a https://www.encodeproject.org/files/ENCFF730GTB/@@download/ENCFF730GTB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF732QKX bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 4458460 ENCODE Processing Pipeline 7ecea1a5ecb46e2e36d17349a13d2f11 https://www.encodeproject.org/files/ENCFF732QKX/@@download/ENCFF732QKX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001XUA bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXV 713584 John Stamatoyannopoulos, UW d3b4032778c0d2aae425952ac89ed139 https://www.encodeproject.org/files/ENCFF001XUA/@@download/ENCFF001XUA.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF837XNW bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF025QGP, ENCFF627YEZ 4094993 ENCODE Processing Pipeline 6fd0e2c1d8d4cdeef8c15beacf5af599 https://www.encodeproject.org/files/ENCFF837XNW/@@download/ENCFF837XNW.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF500IOB bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF381JSU 4137847 ENCODE Processing Pipeline 9fe0a156a59581ab25f0d64e83dd3461 https://www.encodeproject.org/files/ENCFF500IOB/@@download/ENCFF500IOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF607FHS bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 2 ENCFF004XDI, ENCFF342MWY, ENCFF602DKP 6332816 ENCODE Processing Pipeline eb8dba5e0c5c90d342f6ffcbf32ae0c0 https://www.encodeproject.org/files/ENCFF607FHS/@@download/ENCFF607FHS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF312BLK bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF340SPV, ENCFF599MVB 4312437 ENCODE Processing Pipeline 4d688f33f41e2069d1e3663e4acc70ed https://www.encodeproject.org/files/ENCFF312BLK/@@download/ENCFF312BLK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF279KYF bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 7001273 ENCODE Processing Pipeline cd2c87ab7d899cbebf90812117c66479 https://www.encodeproject.org/files/ENCFF279KYF/@@download/ENCFF279KYF.bed.gz hg19 released ENCFF001XMU bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GZP 692623 John Stamatoyannopoulos, UW baaf1db2fcd53395f86ae116ecc0d17b https://www.encodeproject.org/files/ENCFF001XMU/@@download/ENCFF001XMU.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF777VSN bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF706WFS, ENCFF767ZGM 2672218 ENCODE Processing Pipeline 27fe350d5804c3efdc4c6767efabe4b2 https://www.encodeproject.org/files/ENCFF777VSN/@@download/ENCFF777VSN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF596IAY bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF797QYH, ENCFF837IOW, ENCFF963CVB 6443781 ENCODE Processing Pipeline 095302b6744b84ea2547f4ca832e1167 https://www.encodeproject.org/files/ENCFF596IAY/@@download/ENCFF596IAY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF339XVK bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 2 ENCFF346LNS, ENCFF506SFP, ENCFF696UZI 5903649 ENCODE Processing Pipeline bb7c37656966b23123b9790192b394b4 https://www.encodeproject.org/files/ENCFF339XVK/@@download/ENCFF339XVK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF091TOR bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 4520836 ENCODE Processing Pipeline 5e14d520c61c7a53b23765785084f5de https://www.encodeproject.org/files/ENCFF091TOR/@@download/ENCFF091TOR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XMM bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GYJ 775525 John Stamatoyannopoulos, UW 2b0104a1d500acf85ebd1165d5d33d8d https://www.encodeproject.org/files/ENCFF001XMM/@@download/ENCFF001XMM.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF241LIY bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF281JOP, ENCFF972ATQ 4309365 ENCODE Processing Pipeline 2e3c84a3715912d9ca749147da1895bd https://www.encodeproject.org/files/ENCFF241LIY/@@download/ENCFF241LIY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF450PVT bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117FPW, ENCFF356DXM 4093263 ENCODE Processing Pipeline 070b4b558160195a7d0f3ab27ce29f9d https://www.encodeproject.org/files/ENCFF450PVT/@@download/ENCFF450PVT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF574TBH bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF191DFR, ENCFF270WBP, ENCFF601AUG 5604883 ENCODE Processing Pipeline d0787580587d9830e42b85456e5e8210 https://www.encodeproject.org/files/ENCFF574TBH/@@download/ENCFF574TBH.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF234PNC bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF423HKM, ENCFF545DZO 4079736 ENCODE Processing Pipeline e0b33802feebc9eead970443f79cf85f https://www.encodeproject.org/files/ENCFF234PNC/@@download/ENCFF234PNC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HHA 544011 John Stamatoyannopoulos, UW 8ff0ac43097610e612420463de007152 https://www.encodeproject.org/files/ENCFF001XPI/@@download/ENCFF001XPI.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF046FAZ bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF182XEA, ENCFF360WOG 2503847 ENCODE Processing Pipeline fa4e3d0f2e1435f5c31e8e90d090f8c6 https://www.encodeproject.org/files/ENCFF046FAZ/@@download/ENCFF046FAZ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF793WOV bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF812HUT, ENCFF892PZK, ENCFF958RTR 4359463 ENCODE Processing Pipeline 59cf874f4e38d5ca45ad163d6c632bda https://www.encodeproject.org/files/ENCFF793WOV/@@download/ENCFF793WOV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF873BHU bed narrowPeak peaks ENCSR582MTM ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 2 ENCFF592HGH, ENCFF985JPM 4832031 ENCODE Processing Pipeline 61a2fd11b3639d9c0df47240e44f5e6c https://www.encodeproject.org/files/ENCFF873BHU/@@download/ENCFF873BHU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF001XSU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 601656 John Stamatoyannopoulos, UW ac9eb0f49655b416b767f25be87d0f8b https://www.encodeproject.org/files/ENCFF001XSU/@@download/ENCFF001XSU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF457WBU bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF551AQK 3582199 ENCODE Processing Pipeline 7192241e9e8b555f465ce209223b0a77 https://www.encodeproject.org/files/ENCFF457WBU/@@download/ENCFF457WBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF850ZXW bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF194PQZ, ENCFF346RZT 5658800 ENCODE Processing Pipeline 2864840f71c2e82e706788efcd3da734 https://www.encodeproject.org/files/ENCFF850ZXW/@@download/ENCFF850ZXW.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF847XRL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 2486166 ENCODE Processing Pipeline 33a6656245faca919822bdb778bb5af9 https://www.encodeproject.org/files/ENCFF847XRL/@@download/ENCFF847XRL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF915PWP bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF163WNN, ENCFF385UZW, ENCFF451SVK 6100374 ENCODE Processing Pipeline f668df82c5013c3dc11ee7147f514f74 https://www.encodeproject.org/files/ENCFF915PWP/@@download/ENCFF915PWP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF429WXC bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF728IVZ 3915798 ENCODE Processing Pipeline f6653f3d0a01e5ae0da9a2c116519085 https://www.encodeproject.org/files/ENCFF429WXC/@@download/ENCFF429WXC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF128GGA bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF169ZIP, ENCFF545DZO 3703960 ENCODE Processing Pipeline b202a9dadaea6440fee22d78cd1f676e https://www.encodeproject.org/files/ENCFF128GGA/@@download/ENCFF128GGA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF794ILD bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF004ZLO, ENCFF958RTR, ENCFF963CVB 5690456 ENCODE Processing Pipeline b7a1d833bed610efdfaecd2e6c6ae8f6 https://www.encodeproject.org/files/ENCFF794ILD/@@download/ENCFF794ILD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XQY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HNA 851723 John Stamatoyannopoulos, UW 01250d7daafd7557c591fb9991464bb5 https://www.encodeproject.org/files/ENCFF001XQY/@@download/ENCFF001XQY.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF242KOJ bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF111FGZ, ENCFF872VKZ 2425519 ENCODE Processing Pipeline 8245ad26b6b0b5b41a58e3cefc7efe07 https://www.encodeproject.org/files/ENCFF242KOJ/@@download/ENCFF242KOJ.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF058SVD bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF319HSK, ENCFF382BNF 4656074 ENCODE Processing Pipeline 47a4ac6d52ba1dfc37fe3d79f2b185bd https://www.encodeproject.org/files/ENCFF058SVD/@@download/ENCFF058SVD.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF859MQB bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 5152875 ENCODE Processing Pipeline 71baec99e51af3ddd25dbb5560627e68 https://www.encodeproject.org/files/ENCFF859MQB/@@download/ENCFF859MQB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001XNJ bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HBQ 713329 John Stamatoyannopoulos, UW 32960c49d1ed141e6c54f15414942bb9 https://www.encodeproject.org/files/ENCFF001XNJ/@@download/ENCFF001XNJ.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF756RGK bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF248LUV, ENCFF979ICT 3069932 ENCODE Processing Pipeline 8e407e153852c3c8fea8751f0e4158c4 https://www.encodeproject.org/files/ENCFF756RGK/@@download/ENCFF756RGK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF832BPN bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF977PDQ 4241624 ENCODE Processing Pipeline f3455cfebc308f6dc6b360696db47636 https://www.encodeproject.org/files/ENCFF832BPN/@@download/ENCFF832BPN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF359DUK bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF355LJR 4845278 ENCODE Processing Pipeline d5d4b94701097a50c57b885794f761d8 https://www.encodeproject.org/files/ENCFF359DUK/@@download/ENCFF359DUK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF416FNH bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF157CZE 5140414 ENCODE Processing Pipeline ebc91754346f4bf8ceb120368730384b https://www.encodeproject.org/files/ENCFF416FNH/@@download/ENCFF416FNH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF467HMZ bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF002HVX, ENCFF690QBI 3965013 ENCODE Processing Pipeline 1362840114d5fb2d23a67ba4b732b554 https://www.encodeproject.org/files/ENCFF467HMZ/@@download/ENCFF467HMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF025FXN bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 2 ENCFF274MHJ, ENCFF760DHW 6928011 ENCODE Processing Pipeline cd1a93e3903f5c2580ee2aed69176ac5 https://www.encodeproject.org/files/ENCFF025FXN/@@download/ENCFF025FXN.bed.gz hg19 released ENCFF776GTW bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 2 ENCFF287GWT, ENCFF545DZO 4553274 ENCODE Processing Pipeline 5169acff0ca163969d36b2a38025f5ab https://www.encodeproject.org/files/ENCFF776GTW/@@download/ENCFF776GTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF806NEN bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF508HCX, ENCFF617HLC 6261010 ENCODE Processing Pipeline b12b3a898aaae73f6bae267d89c05c62 https://www.encodeproject.org/files/ENCFF806NEN/@@download/ENCFF806NEN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF001XRW bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HQF 866798 John Stamatoyannopoulos, UW 09854fb94d70441e5f5e75934253be16 https://www.encodeproject.org/files/ENCFF001XRW/@@download/ENCFF001XRW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF470ARY bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF066DPY, ENCFF327YGC 4543454 ENCODE Processing Pipeline 02892451904ce256dde4a1e8c00bea2b https://www.encodeproject.org/files/ENCFF470ARY/@@download/ENCFF470ARY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF343XMY bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF134TNE, ENCFF248GJG, ENCFF555PAB 3664593 ENCODE Processing Pipeline 5803a50288c019371d7c79257bfd792a https://www.encodeproject.org/files/ENCFF343XMY/@@download/ENCFF343XMY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF561VAE bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF346RZT, ENCFF349ECU 4241707 ENCODE Processing Pipeline 7b0a5fea5ae5cbc51a424bd71e8b45f2 https://www.encodeproject.org/files/ENCFF561VAE/@@download/ENCFF561VAE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF439SZI bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 4815522 ENCODE Processing Pipeline 10145ccca4d460e694c04cd4cb50c12e https://www.encodeproject.org/files/ENCFF439SZI/@@download/ENCFF439SZI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XNP bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HCD 710634 John Stamatoyannopoulos, UW d4750ee3f7d12f52db88190563f13230 https://www.encodeproject.org/files/ENCFF001XNP/@@download/ENCFF001XNP.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF109JHW bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF593BXM, ENCFF683FXB 2147125 ENCODE Processing Pipeline a1d48b4c1e08a2527a94ea40dabc8d88 https://www.encodeproject.org/files/ENCFF109JHW/@@download/ENCFF109JHW.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF049XKA bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF384QVL, ENCFF666BHZ 2854269 ENCODE Processing Pipeline adfd22125195df800a1212c8a381ec51 https://www.encodeproject.org/files/ENCFF049XKA/@@download/ENCFF049XKA.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF942MUF bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 3449310 ENCODE Processing Pipeline c6502e4f08098ed2b9766c2dfff6b5c2 https://www.encodeproject.org/files/ENCFF942MUF/@@download/ENCFF942MUF.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF045UZK bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF628WKV, ENCFF814FCQ 3064246 ENCODE Processing Pipeline 29af1a0d0101ff71fd4acf3f4c5d783f https://www.encodeproject.org/files/ENCFF045UZK/@@download/ENCFF045UZK.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF386WPS bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF498ADD, ENCFF864UEQ 6274603 ENCODE Processing Pipeline 125cbc61b3d0171b55b890cc01723ad7 https://www.encodeproject.org/files/ENCFF386WPS/@@download/ENCFF386WPS.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF986CUM bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117IWF, ENCFF960JYT 4368560 ENCODE Processing Pipeline 24ebbcac2df7f45c270d780b00ed9e59 https://www.encodeproject.org/files/ENCFF986CUM/@@download/ENCFF986CUM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF398EYK bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF992CYL 5017089 ENCODE Processing Pipeline 20de1c2c3d31c1351fb6eec9411926c4 https://www.encodeproject.org/files/ENCFF398EYK/@@download/ENCFF398EYK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF545EHA bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 4817312 ENCODE Processing Pipeline f537e875ce6fc4c5e3a7015a07e63207 https://www.encodeproject.org/files/ENCFF545EHA/@@download/ENCFF545EHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF016LSH bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF251HGY 5711721 ENCODE Processing Pipeline 8682495f78f9233d8126f6dc031fc4e4 https://www.encodeproject.org/files/ENCFF016LSH/@@download/ENCFF016LSH.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF741YYS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 2 ENCFF406DSV, ENCFF449NNE, ENCFF999EQI 6571487 ENCODE Processing Pipeline bc51d18284ca90cbb8fed1c2d29ee50a https://www.encodeproject.org/files/ENCFF741YYS/@@download/ENCFF741YYS.bed.gz hg19 released antibody characterized with exemption ENCFF100FXA bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 4035379 ENCODE Processing Pipeline c3ae106011943b7122e307a0f977bc5b https://www.encodeproject.org/files/ENCFF100FXA/@@download/ENCFF100FXA.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF991EAY bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF495EUE 5328256 ENCODE Processing Pipeline 2ee5953aa6de0791f490b2026f3bd9bf https://www.encodeproject.org/files/ENCFF991EAY/@@download/ENCFF991EAY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF276JRH bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF864UEQ, ENCFF866ZRH 6141571 ENCODE Processing Pipeline d88e865ceb5df9636fa3bb8dfb312a3b https://www.encodeproject.org/files/ENCFF276JRH/@@download/ENCFF276JRH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF781ICW bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF289PMY, ENCFF685FVQ, ENCFF698OND 3787582 ENCODE Processing Pipeline 21e96d4e43780edaff60b2cfd03428ee https://www.encodeproject.org/files/ENCFF781ICW/@@download/ENCFF781ICW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF906INE bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF032WUR, ENCFF216EUF, ENCFF958RTR 5656449 ENCODE Processing Pipeline ccae6eee137a6eca43b13cf031ab40ef https://www.encodeproject.org/files/ENCFF906INE/@@download/ENCFF906INE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF914ZYY bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF117OSG, ENCFF356DXM 2191945 ENCODE Processing Pipeline a2b7a8d8d086152f2616316ce5182a41 https://www.encodeproject.org/files/ENCFF914ZYY/@@download/ENCFF914ZYY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF694VSV bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF296BML, ENCFF512WDI, ENCFF644WIF 5134148 ENCODE Processing Pipeline 5d843acff237a4ed39f9e362e90560ab https://www.encodeproject.org/files/ENCFF694VSV/@@download/ENCFF694VSV.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF668SRV bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF666ZPP, ENCFF784AUK 5328556 ENCODE Processing Pipeline 22cb5e7ce3fb5be08497bc1699eeb5bc https://www.encodeproject.org/files/ENCFF668SRV/@@download/ENCFF668SRV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF837CQV bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 2577171 ENCODE Processing Pipeline 22d2b8db8c9b6fb4ede4fec6f30d96fd https://www.encodeproject.org/files/ENCFF837CQV/@@download/ENCFF837CQV.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF371DUN bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 2 ENCFF321UJV, ENCFF871NUZ, ENCFF888UFX 6564913 ENCODE Processing Pipeline 6ca81dba4fd491968e30149457f0af5f https://www.encodeproject.org/files/ENCFF371DUN/@@download/ENCFF371DUN.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF001XNC bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAR 820524 John Stamatoyannopoulos, UW e4f67fbb8502d9d6a14a8d9035605c42 https://www.encodeproject.org/files/ENCFF001XNC/@@download/ENCFF001XNC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF830SNU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF131LGY, ENCFF524OIZ 3974507 ENCODE Processing Pipeline 11f636264bfc02c3ed2b9491977cee63 https://www.encodeproject.org/files/ENCFF830SNU/@@download/ENCFF830SNU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF842BMF bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF659DTG, ENCFF864UEQ 6682281 ENCODE Processing Pipeline 3c5b424ef087cfc8a72d97312edcfd29 https://www.encodeproject.org/files/ENCFF842BMF/@@download/ENCFF842BMF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF512BFW bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 2 ENCFF200LFK, ENCFF321UJV, ENCFF895OPN 6540785 ENCODE Processing Pipeline 7a7510bbc9d003ee483eea0ec474d440 https://www.encodeproject.org/files/ENCFF512BFW/@@download/ENCFF512BFW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF180NNF bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 1061408 ENCODE Processing Pipeline 5c9072fe36bd7389f2865e50f52d2cf5 https://www.encodeproject.org/files/ENCFF180NNF/@@download/ENCFF180NNF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF788BDL bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 2 ENCFF595XJJ, ENCFF871NUZ 5644585 ENCODE Processing Pipeline 3336128abb2681da891b929d37244e79 https://www.encodeproject.org/files/ENCFF788BDL/@@download/ENCFF788BDL.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF502JYT bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF716DZQ 3645251 ENCODE Processing Pipeline 9595fd26369e5f64ce4bce97ca41d979 https://www.encodeproject.org/files/ENCFF502JYT/@@download/ENCFF502JYT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF847KJV bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF704SGZ, ENCFF880DIZ 4166481 ENCODE Processing Pipeline 37c9960d1e9a499802d5acda354727c2 https://www.encodeproject.org/files/ENCFF847KJV/@@download/ENCFF847KJV.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF225XDH bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 2 ENCFF679HGX, ENCFF991UTU 5589494 ENCODE Processing Pipeline 76ffd2dbee137855d63fc7369ff33c6c https://www.encodeproject.org/files/ENCFF225XDH/@@download/ENCFF225XDH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF449PNR bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF509UIP, ENCFF599MVB 4398599 ENCODE Processing Pipeline 0fa25558b252e59dedb6b6c2d0c0b540 https://www.encodeproject.org/files/ENCFF449PNR/@@download/ENCFF449PNR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF289FQM bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF671MIT, ENCFF837IOW 4637535 ENCODE Processing Pipeline adf6c66b00665025515bad11517e18ef https://www.encodeproject.org/files/ENCFF289FQM/@@download/ENCFF289FQM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF395ZTW bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF678LJA, ENCFF864UEQ 6719388 ENCODE Processing Pipeline 6df4ca160476c7e68c96fafea8f491de https://www.encodeproject.org/files/ENCFF395ZTW/@@download/ENCFF395ZTW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XQM bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HLO 632186 John Stamatoyannopoulos, UW 2d732a8daebf71f3cd527787a2327939 https://www.encodeproject.org/files/ENCFF001XQM/@@download/ENCFF001XQM.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF655DUF bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF052OHY, ENCFF322EWR 4031483 ENCODE Processing Pipeline 30d8f79a3f78539e4dad8986a315e5c9 https://www.encodeproject.org/files/ENCFF655DUF/@@download/ENCFF655DUF.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF588CWW bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF044MEQ, ENCFF813EGR 4475853 ENCODE Processing Pipeline 11c95e53f2c6842553d23a69793e3f64 https://www.encodeproject.org/files/ENCFF588CWW/@@download/ENCFF588CWW.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF308DEQ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF472OOV, ENCFF871ASR 5107914 ENCODE Processing Pipeline 49a9703abf533e94633ee660cd406419 https://www.encodeproject.org/files/ENCFF308DEQ/@@download/ENCFF308DEQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF539QIT bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 2 ENCFF224HMM, ENCFF991UTU 5006850 ENCODE Processing Pipeline 3000419cc1a9289e4a24a47454b3aee7 https://www.encodeproject.org/files/ENCFF539QIT/@@download/ENCFF539QIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF734EMB bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF404XBY, ENCFF837IOW 4570713 ENCODE Processing Pipeline dcf37d805f0491b7b886ff1113be27a8 https://www.encodeproject.org/files/ENCFF734EMB/@@download/ENCFF734EMB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF421BMH bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF154TCG, ENCFF698QEQ 404157 ENCODE Processing Pipeline 33f6c9179f9fb50d7635019a86d20749 https://www.encodeproject.org/files/ENCFF421BMH/@@download/ENCFF421BMH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XME bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GXR 767870 John Stamatoyannopoulos, UW 54073de26393c7591464492858d7fbba https://www.encodeproject.org/files/ENCFF001XME/@@download/ENCFF001XME.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF949AFF bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF263AQI, ENCFF696BBG 4359042 ENCODE Processing Pipeline 6f86a2b9f5b2b6e1f8f5b2500677e505 https://www.encodeproject.org/files/ENCFF949AFF/@@download/ENCFF949AFF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF457IQL bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF492RDK, ENCFF548VNJ, ENCFF675VLP 4816631 ENCODE Processing Pipeline 16d273b1b7fe5772fdaed5104b46427a https://www.encodeproject.org/files/ENCFF457IQL/@@download/ENCFF457IQL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF375JMY bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 3550767 ENCODE Processing Pipeline 35c0d89b30c713f3d58bc4a0379b79fd https://www.encodeproject.org/files/ENCFF375JMY/@@download/ENCFF375JMY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF868UJU bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF545DZO, ENCFF958IJR 3887829 ENCODE Processing Pipeline 17baab5ed4f7c773f191519d3e6f609b https://www.encodeproject.org/files/ENCFF868UJU/@@download/ENCFF868UJU.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF387XCG bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF299WPU, ENCFF346RZT 4836239 ENCODE Processing Pipeline 39c5f3ab0bde123d63d31b60f0c13e36 https://www.encodeproject.org/files/ENCFF387XCG/@@download/ENCFF387XCG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF159YRA bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF697QYW 4464087 ENCODE Processing Pipeline 4ecc8bf46ac16b07181bedc3bb3760de https://www.encodeproject.org/files/ENCFF159YRA/@@download/ENCFF159YRA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF126LPK bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF420MOQ, ENCFF442GDP 16440 ENCODE Processing Pipeline 463c61ace235cf292207aef54c3928c2 https://www.encodeproject.org/files/ENCFF126LPK/@@download/ENCFF126LPK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF080SVL bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF037DLB, ENCFF599MVB 5189979 ENCODE Processing Pipeline 076f2ec7359b5e403e5bc6d534780373 https://www.encodeproject.org/files/ENCFF080SVL/@@download/ENCFF080SVL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF679VQP bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF300XQD, ENCFF334MOO, ENCFF472OOV 5433003 ENCODE Processing Pipeline abb6c315b415a8830ef75ed1309c7a41 https://www.encodeproject.org/files/ENCFF679VQP/@@download/ENCFF679VQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001XUE bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HYI 455440 John Stamatoyannopoulos, UW a60c161e74780cafa7169540c23ee93d https://www.encodeproject.org/files/ENCFF001XUE/@@download/ENCFF001XUE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF381HQF bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF236EOM, ENCFF681UDE 4002859 ENCODE Processing Pipeline bcd5a89d0a3d1dd94e8e36f75c21292c https://www.encodeproject.org/files/ENCFF381HQF/@@download/ENCFF381HQF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF490WRP bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 2645766 ENCODE Processing Pipeline b4c91a9f9340d89c0975816c7cdab774 https://www.encodeproject.org/files/ENCFF490WRP/@@download/ENCFF490WRP.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF148FBK bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 5143978 ENCODE Processing Pipeline dcb2ca543a2f81c300abae00838438a4 https://www.encodeproject.org/files/ENCFF148FBK/@@download/ENCFF148FBK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF499YNQ bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF041XFO, ENCFF697SEU 5504698 ENCODE Processing Pipeline a86ca4eb9dd06ecdef514e8e573cbf89 https://www.encodeproject.org/files/ENCFF499YNQ/@@download/ENCFF499YNQ.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF686BCT bed narrowPeak peaks ENCSR000BMJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF638QOI 3736105 ENCODE Processing Pipeline db3d8e882754797b05f67bf1ef499923 https://www.encodeproject.org/files/ENCFF686BCT/@@download/ENCFF686BCT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF527FXX bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF191SLR, ENCFF350LQZ, ENCFF714RHW 4532432 ENCODE Processing Pipeline 9d65dee2b43c968f92488a2be9b805a7 https://www.encodeproject.org/files/ENCFF527FXX/@@download/ENCFF527FXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF587UQZ bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF379GUA, ENCFF742DJF 5822355 ENCODE Processing Pipeline 7263de0e9d883c1ed6658b47c888d56a https://www.encodeproject.org/files/ENCFF587UQZ/@@download/ENCFF587UQZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF169DCU bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF994UGO 5219355 ENCODE Processing Pipeline f8f9e17f6114336d07e507400998d026 https://www.encodeproject.org/files/ENCFF169DCU/@@download/ENCFF169DCU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF775ACP bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF279XQE, ENCFF902HRT 2560643 ENCODE Processing Pipeline 4534548ee90e4e26f846c551de748a1b https://www.encodeproject.org/files/ENCFF775ACP/@@download/ENCFF775ACP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF868HHE bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF410CQF 4456330 ENCODE Processing Pipeline c9be9f83053fcb095365c34844348642 https://www.encodeproject.org/files/ENCFF868HHE/@@download/ENCFF868HHE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF598OWM bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF030JIY, ENCFF382BNF 3937689 ENCODE Processing Pipeline 39eb24fb2ec92133b5b20f3428aa7fac https://www.encodeproject.org/files/ENCFF598OWM/@@download/ENCFF598OWM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF650YKB bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 3690353 ENCODE Processing Pipeline d43b5690540dd71c1b9f817ded4a79c2 https://www.encodeproject.org/files/ENCFF650YKB/@@download/ENCFF650YKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF453YFD bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF665YWG 4232997 ENCODE Processing Pipeline 7c4c672f1c0f3c9cf4efaf1e1b85c80b https://www.encodeproject.org/files/ENCFF453YFD/@@download/ENCFF453YFD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF797EKN bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 3236176 ENCODE Processing Pipeline 07b93e0a5afac38587f86032ead1a9d2 https://www.encodeproject.org/files/ENCFF797EKN/@@download/ENCFF797EKN.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF392HAM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF092KAW, ENCFF599MVB 4281939 ENCODE Processing Pipeline 4b4ad69bceb5dea6af4133c068fdecb3 https://www.encodeproject.org/files/ENCFF392HAM/@@download/ENCFF392HAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF306KIF bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF874IUN 5125642 ENCODE Processing Pipeline 30b012c668d7bc406b0392591d3a148f https://www.encodeproject.org/files/ENCFF306KIF/@@download/ENCFF306KIF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF122PLB bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF051OWS, ENCFF545DZO 3763406 ENCODE Processing Pipeline 746f3e5bb9e3b409bd26d24ef85bf3fd https://www.encodeproject.org/files/ENCFF122PLB/@@download/ENCFF122PLB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF045XQS bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF572PHE, ENCFF787RYL 5688990 ENCODE Processing Pipeline fd1959e570e921880dd6b871081b0054 https://www.encodeproject.org/files/ENCFF045XQS/@@download/ENCFF045XQS.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF413GIF bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 2 ENCFF223KCT, ENCFF572PHE 5883774 ENCODE Processing Pipeline 9c5b278573a71d45d07c399a054649bb https://www.encodeproject.org/files/ENCFF413GIF/@@download/ENCFF413GIF.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF139EAR bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 6591880 ENCODE Processing Pipeline 9325df784d9bedd79174dcf72faeafdf https://www.encodeproject.org/files/ENCFF139EAR/@@download/ENCFF139EAR.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF753OLX bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 504591 ENCODE Processing Pipeline 7f0fd0a4ec1a19ce2d1dd6be0e5887e2 https://www.encodeproject.org/files/ENCFF753OLX/@@download/ENCFF753OLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF106CWI bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF042ZNZ, ENCFF545DZO 3586452 ENCODE Processing Pipeline aa427312a1b7c1de79edac49970f5ef1 https://www.encodeproject.org/files/ENCFF106CWI/@@download/ENCFF106CWI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF987HSI bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 4571912 ENCODE Processing Pipeline 4d3e144ab7b5f8f68869361d01a844a0 https://www.encodeproject.org/files/ENCFF987HSI/@@download/ENCFF987HSI.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001XPQ bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HIM 869927 John Stamatoyannopoulos, UW 7996532948c808b2eb4f82e13c63593a https://www.encodeproject.org/files/ENCFF001XPQ/@@download/ENCFF001XPQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF724RQI bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF022ACL, ENCFF188FPI 4731292 ENCODE Processing Pipeline 5c31453f4907d1601b859506d877fc64 https://www.encodeproject.org/files/ENCFF724RQI/@@download/ENCFF724RQI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF719YRP bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF066FGA, ENCFF191DFR, ENCFF601AUG 4541725 ENCODE Processing Pipeline be07150654ff67560989d7344ad9ffe7 https://www.encodeproject.org/files/ENCFF719YRP/@@download/ENCFF719YRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF001XTE bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HUQ 647688 John Stamatoyannopoulos, UW f866d5f14382ccd11bfb96f4ca5cadb0 https://www.encodeproject.org/files/ENCFF001XTE/@@download/ENCFF001XTE.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF683BND bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF162IBF, ENCFF568DKF 4720509 ENCODE Processing Pipeline acacafe644a7c1d953ed936107b9ca3b https://www.encodeproject.org/files/ENCFF683BND/@@download/ENCFF683BND.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XSQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HSO 709699 John Stamatoyannopoulos, UW 930a63c21338dc088e87bc2ebc231136 https://www.encodeproject.org/files/ENCFF001XSQ/@@download/ENCFF001XSQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF883QKB bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF807YUN, ENCFF976BRM 3070972 ENCODE Processing Pipeline 247d21ff9e5c2eea4eddd298ab499308 https://www.encodeproject.org/files/ENCFF883QKB/@@download/ENCFF883QKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF609KEQ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 6562166 ENCODE Processing Pipeline c9ecb892a86a5097da79006baf7c5a7a https://www.encodeproject.org/files/ENCFF609KEQ/@@download/ENCFF609KEQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF167THE bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF334MOO, ENCFF346RZT, ENCFF802IIV 2949066 ENCODE Processing Pipeline 7dc33457c7ce90d2589689d9fea3e183 https://www.encodeproject.org/files/ENCFF167THE/@@download/ENCFF167THE.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF726YHM bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 3041994 ENCODE Processing Pipeline 1a28c8a592152dca965a48085b9c329b https://www.encodeproject.org/files/ENCFF726YHM/@@download/ENCFF726YHM.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF394RSM bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 2131563 ENCODE Processing Pipeline 14ba65ae5c45d842c41cd3fc22b91023 https://www.encodeproject.org/files/ENCFF394RSM/@@download/ENCFF394RSM.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF882KTD bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF054FYX, ENCFF294SLK 1711738 ENCODE Processing Pipeline f87f91d68e18cab8f0f3ffd8e24d22c4 https://www.encodeproject.org/files/ENCFF882KTD/@@download/ENCFF882KTD.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF026LZC bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF139WTG, ENCFF864UEQ 6440257 ENCODE Processing Pipeline 1c283cf8f6ecdc9a3724224810a85c2b https://www.encodeproject.org/files/ENCFF026LZC/@@download/ENCFF026LZC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF385UJM bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF376UIU, ENCFF903NFJ 2968239 ENCODE Processing Pipeline be71180a21f77eb94e558d5b4a7d91cc https://www.encodeproject.org/files/ENCFF385UJM/@@download/ENCFF385UJM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001XSY bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HTX 827324 John Stamatoyannopoulos, UW 64a8c89348e3f69b4c3a9fc36cb0da51 https://www.encodeproject.org/files/ENCFF001XSY/@@download/ENCFF001XSY.bed.gz hg19 archived low read length, low read depth ENCFF095BZW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF307AYT, ENCFF340AIJ 4567243 ENCODE Processing Pipeline c79f4c4f32756d7ed9fc5ebc6ba00009 https://www.encodeproject.org/files/ENCFF095BZW/@@download/ENCFF095BZW.bed.gz hg19 released low read length, low read depth ENCFF598COF bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF100KVY, ENCFF279XQE 4158761 ENCODE Processing Pipeline 988c853ef62ae5c1b99a14b507211924 https://www.encodeproject.org/files/ENCFF598COF/@@download/ENCFF598COF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF763YXP bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 2052776 ENCODE Processing Pipeline 291f711da6540d9f17763904a9aa0e40 https://www.encodeproject.org/files/ENCFF763YXP/@@download/ENCFF763YXP.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF332PXJ bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 2 ENCFF180AFK, ENCFF425JYG 4452245 ENCODE Processing Pipeline c76c678b91febf4b32bbee4a07209890 https://www.encodeproject.org/files/ENCFF332PXJ/@@download/ENCFF332PXJ.bed.gz hg19 released low read length, borderline replicate concordance ENCFF162PXN bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF599MVB, ENCFF632FAF 4866657 ENCODE Processing Pipeline cb09e43a8548d96a6b0d7f6dd4a2ed3c https://www.encodeproject.org/files/ENCFF162PXN/@@download/ENCFF162PXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF646NDI bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 1968931 ENCODE Processing Pipeline 8fa53b70dea97ab361bb124c40ed951e https://www.encodeproject.org/files/ENCFF646NDI/@@download/ENCFF646NDI.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF719OMW bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF945BSS 4757155 ENCODE Processing Pipeline b51e7e533d188036b29c628c6add1273 https://www.encodeproject.org/files/ENCFF719OMW/@@download/ENCFF719OMW.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF265CMT bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF214JZV, ENCFF334MOO 4860955 ENCODE Processing Pipeline 8f9f5dd16287956faa16cb47968de548 https://www.encodeproject.org/files/ENCFF265CMT/@@download/ENCFF265CMT.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF377UTP bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF296BML, ENCFF378FXS, ENCFF512WDI 4628592 ENCODE Processing Pipeline 1f51be56a8b2367fb25ba99d8e936c45 https://www.encodeproject.org/files/ENCFF377UTP/@@download/ENCFF377UTP.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF835OES bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 6570249 ENCODE Processing Pipeline 212a2ff40851d7621a349d36fec6ab6d https://www.encodeproject.org/files/ENCFF835OES/@@download/ENCFF835OES.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF411KUR bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF385WMX, ENCFF624TPS 3774499 ENCODE Processing Pipeline 742a8111971ca27407f29349b300b741 https://www.encodeproject.org/files/ENCFF411KUR/@@download/ENCFF411KUR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF518BAN bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF416BIN, ENCFF818ZLY, ENCFF899CBZ 2426289 ENCODE Processing Pipeline 25dfe68525a7de8c54c3f2ec7bebd924 https://www.encodeproject.org/files/ENCFF518BAN/@@download/ENCFF518BAN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF182AWR bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 5260689 ENCODE Processing Pipeline 0d7bb4ba36aaaddc656d121e2b42a299 https://www.encodeproject.org/files/ENCFF182AWR/@@download/ENCFF182AWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF731ASC bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF191DFR, ENCFF601AUG, ENCFF924BHS 5137571 ENCODE Processing Pipeline 70c6919ebd76472f12d1a27c903162d1 https://www.encodeproject.org/files/ENCFF731ASC/@@download/ENCFF731ASC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XQU bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HMN 589612 John Stamatoyannopoulos, UW 689e2aab8c5f9cd690e2e38010bedccf https://www.encodeproject.org/files/ENCFF001XQU/@@download/ENCFF001XQU.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF035ZLA bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF852CZT, ENCFF986XGP 1729204 ENCODE Processing Pipeline 8dcb9fb047554a27bc9fe53c14fbd6d3 https://www.encodeproject.org/files/ENCFF035ZLA/@@download/ENCFF035ZLA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF696JUU bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 4050836 ENCODE Processing Pipeline 4a44bab8f4bcead504e3cb3893aca4f3 https://www.encodeproject.org/files/ENCFF696JUU/@@download/ENCFF696JUU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF270KWZ bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF388CVC, ENCFF958RTR 4858938 ENCODE Processing Pipeline 921c7d3a7304282c1fbd1270122c75c3 https://www.encodeproject.org/files/ENCFF270KWZ/@@download/ENCFF270KWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF072IAO bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 4618271 ENCODE Processing Pipeline ae10aa547fd6fab5d59fa959444e259c https://www.encodeproject.org/files/ENCFF072IAO/@@download/ENCFF072IAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF520BPM bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF108EFL, ENCFF373FVR 2080267 ENCODE Processing Pipeline a2ad83f7f53d0ef17f4178ba6b549d57 https://www.encodeproject.org/files/ENCFF520BPM/@@download/ENCFF520BPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF475ICG bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 1785632 ENCODE Processing Pipeline 985f27c035f182ff8942dea5b697eda7 https://www.encodeproject.org/files/ENCFF475ICG/@@download/ENCFF475ICG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF299QBC bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF905QYS 4936211 ENCODE Processing Pipeline f3b583381aadd3ff4bf0f35c396944ba https://www.encodeproject.org/files/ENCFF299QBC/@@download/ENCFF299QBC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF385JVK bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 1525708 ENCODE Processing Pipeline f93457e811729a1fdec4d62809e3091c https://www.encodeproject.org/files/ENCFF385JVK/@@download/ENCFF385JVK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF887IBL bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 5347011 ENCODE Processing Pipeline 073cbf8f91573c530d13ce12e03197d0 https://www.encodeproject.org/files/ENCFF887IBL/@@download/ENCFF887IBL.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF029AGK bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 2 ENCFF243MTV, ENCFF419LUK, ENCFF727XHW 6395810 ENCODE Processing Pipeline 98a44503b6814c9924cd9b364c7bf979 https://www.encodeproject.org/files/ENCFF029AGK/@@download/ENCFF029AGK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF634DSI bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 5092351 ENCODE Processing Pipeline 312cb573a1d3431bd073463f0d75d458 https://www.encodeproject.org/files/ENCFF634DSI/@@download/ENCFF634DSI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF032KSH bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 2 ENCFF320FQJ, ENCFF518OUM 7028649 ENCODE Processing Pipeline ab4b197141ca1092321e093a44751d65 https://www.encodeproject.org/files/ENCFF032KSH/@@download/ENCFF032KSH.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF118LBD bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF545DZO, ENCFF853WZI 4139029 ENCODE Processing Pipeline 9763bff5c78d156a3749165a3f71531d https://www.encodeproject.org/files/ENCFF118LBD/@@download/ENCFF118LBD.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF442AZU bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF003XTF, ENCFF208RCO, ENCFF272WPB 4152781 ENCODE Processing Pipeline 6cbbb57baedf6b1cd681ac2fff80cd08 https://www.encodeproject.org/files/ENCFF442AZU/@@download/ENCFF442AZU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF745TRP bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF545DZO, ENCFF597SZP 3520183 ENCODE Processing Pipeline 11415e78052308ca558ce5c13a8f6440 https://www.encodeproject.org/files/ENCFF745TRP/@@download/ENCFF745TRP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF637DKG bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF085RVS, ENCFF370KVW 3805942 ENCODE Processing Pipeline 9e3e71ffed5f1b3f95cbd6697a875fcb https://www.encodeproject.org/files/ENCFF637DKG/@@download/ENCFF637DKG.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF551TJN bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF893UBS 5928070 ENCODE Processing Pipeline 11b442b8018b0e3bb62e971e40848039 https://www.encodeproject.org/files/ENCFF551TJN/@@download/ENCFF551TJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF960NKG bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF089TJI, ENCFF436XSF, ENCFF666ZPP 4508906 ENCODE Processing Pipeline 06a8d9a3d2379245714e0e572d416e4d https://www.encodeproject.org/files/ENCFF960NKG/@@download/ENCFF960NKG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF427TMP bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF152ZGE, ENCFF864ASU 4615839 ENCODE Processing Pipeline 36de372bcb08585842c4dd2c25d10e93 https://www.encodeproject.org/files/ENCFF427TMP/@@download/ENCFF427TMP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF172OLJ bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF382BNF, ENCFF966SKB 4995784 ENCODE Processing Pipeline 5c2db728b75c6df49b6e5c60823ab5d2 https://www.encodeproject.org/files/ENCFF172OLJ/@@download/ENCFF172OLJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF287VNA bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF264XSG, ENCFF980CFV 7020721 ENCODE Processing Pipeline efb9eeb34e0c180410461026285e9db1 https://www.encodeproject.org/files/ENCFF287VNA/@@download/ENCFF287VNA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF611EGN bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 199621 ENCODE Processing Pipeline 1185acb76f195bd1bc72cceeba189253 https://www.encodeproject.org/files/ENCFF611EGN/@@download/ENCFF611EGN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF326AWX bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF005RXL, ENCFF138XPE, ENCFF562WQJ 4972678 ENCODE Processing Pipeline 1188e67a8edba26ab763fa335d0c8fbd https://www.encodeproject.org/files/ENCFF326AWX/@@download/ENCFF326AWX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF233VOB bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF081LSC, ENCFF385UZW, ENCFF451SVK 7031154 ENCODE Processing Pipeline 50d95775fa519159ed5d5427434147cd https://www.encodeproject.org/files/ENCFF233VOB/@@download/ENCFF233VOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF086NRZ bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325HRK, ENCFF610BER 5985023 ENCODE Processing Pipeline 5106a6356214e15fd438028efd958bd8 https://www.encodeproject.org/files/ENCFF086NRZ/@@download/ENCFF086NRZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF409CPX bed narrowPeak peaks ENCSR000BRC ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF352UMD, ENCFF891DUU 450467 ENCODE Processing Pipeline 2f2367d2512c5c5c551356ee9c8753f6 https://www.encodeproject.org/files/ENCFF409CPX/@@download/ENCFF409CPX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment ENCFF848MDV bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF096SRY, ENCFF243MTV, ENCFF727XHW 7004524 ENCODE Processing Pipeline 99406b60cb6b4af438dfa6c7604f4d5e https://www.encodeproject.org/files/ENCFF848MDV/@@download/ENCFF848MDV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF775VDO bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF356DXM, ENCFF483RYF 5527666 ENCODE Processing Pipeline 548cda6b87da52dac5690de85ceb6b1d https://www.encodeproject.org/files/ENCFF775VDO/@@download/ENCFF775VDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF671MRQ bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 4415578 ENCODE Processing Pipeline 923cb3d41bb396499735f3ecefeedf4c https://www.encodeproject.org/files/ENCFF671MRQ/@@download/ENCFF671MRQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF448IAU bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF295UCD, ENCFF477UBE 6121363 ENCODE Processing Pipeline c83e7090607d46fe00bd0d46d58d80cd https://www.encodeproject.org/files/ENCFF448IAU/@@download/ENCFF448IAU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF757USJ bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF010EZQ, ENCFF196FGA, ENCFF457SKJ 5109268 ENCODE Processing Pipeline 6d11fa34228f26e01c3787d337fc462f https://www.encodeproject.org/files/ENCFF757USJ/@@download/ENCFF757USJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF306ACX bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF635ZTX, ENCFF882SRJ 839058 ENCODE Processing Pipeline d895e44989811c1f600d9f1c3e6f5865 https://www.encodeproject.org/files/ENCFF306ACX/@@download/ENCFF306ACX.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF574PXY bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF550HPW, ENCFF602XLT 5361804 ENCODE Processing Pipeline 494a83e3918dc7ece687d8a71a1106ff https://www.encodeproject.org/files/ENCFF574PXY/@@download/ENCFF574PXY.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF819JEC bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF204EXB, ENCFF602XLT 5566502 ENCODE Processing Pipeline fef965020e11f9ac397f74fdbfbaa7c1 https://www.encodeproject.org/files/ENCFF819JEC/@@download/ENCFF819JEC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF660YDK bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF067NBD, ENCFF675VLP 3940055 ENCODE Processing Pipeline 54bf5195e47bf417a2a71499837ed9fa https://www.encodeproject.org/files/ENCFF660YDK/@@download/ENCFF660YDK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF952DON bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 6654612 ENCODE Processing Pipeline 795e5b41a86fd9c0fb2ecffc0e96b4aa https://www.encodeproject.org/files/ENCFF952DON/@@download/ENCFF952DON.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001XPY bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HJM 744052 John Stamatoyannopoulos, UW be40ff7b27fab09884f1348c4f84eaa2 https://www.encodeproject.org/files/ENCFF001XPY/@@download/ENCFF001XPY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF113ITH bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF092GCH, ENCFF217JIP 4043793 ENCODE Processing Pipeline b90920bb9880c5fd648f636fc9d48cdf https://www.encodeproject.org/files/ENCFF113ITH/@@download/ENCFF113ITH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF583NBG bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 5054985 ENCODE Processing Pipeline 6aee239046d6bf1e67dc315de774e846 https://www.encodeproject.org/files/ENCFF583NBG/@@download/ENCFF583NBG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTO bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HWC 777958 John Stamatoyannopoulos, UW 7b0383c6a7fa3159890f4a4d93fa8d93 https://www.encodeproject.org/files/ENCFF001XTO/@@download/ENCFF001XTO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF077RDH bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF329NOM, ENCFF634UTF 4649659 ENCODE Processing Pipeline 8234eef88374edfa741369974e674b23 https://www.encodeproject.org/files/ENCFF077RDH/@@download/ENCFF077RDH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF844RNW bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 2 ENCFF602XLT, ENCFF667KAV 6244216 ENCODE Processing Pipeline 6a704b18a3bcb0e80d7bd7757e5ef15a https://www.encodeproject.org/files/ENCFF844RNW/@@download/ENCFF844RNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF680SHJ bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF266TDL, ENCFF599MVB 5254209 ENCODE Processing Pipeline 9ee29cd848b56f13677e61357190a3d9 https://www.encodeproject.org/files/ENCFF680SHJ/@@download/ENCFF680SHJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF658PKF bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF289FZF, ENCFF425RUE 4934090 ENCODE Processing Pipeline bc55c5e801368d14b831b3e95136c066 https://www.encodeproject.org/files/ENCFF658PKF/@@download/ENCFF658PKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF602IZZ bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF262TII, ENCFF292YHA, ENCFF782VTV 5453299 ENCODE Processing Pipeline a174f43b96491f8700de62911f5d4e4b https://www.encodeproject.org/files/ENCFF602IZZ/@@download/ENCFF602IZZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF764CZH bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 2665976 ENCODE Processing Pipeline 5abea8924974ef06db7224d4c8df8842 https://www.encodeproject.org/files/ENCFF764CZH/@@download/ENCFF764CZH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XRO bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HPC 752910 John Stamatoyannopoulos, UW 486773dda7ef061e739fa0dfe708e4eb https://www.encodeproject.org/files/ENCFF001XRO/@@download/ENCFF001XRO.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF929WKT bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF427ZOV, ENCFF620RYQ 4315314 ENCODE Processing Pipeline e4577815f1ab2bdb587257ef064d4803 https://www.encodeproject.org/files/ENCFF929WKT/@@download/ENCFF929WKT.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF066ONU bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 1856755 ENCODE Processing Pipeline 14200e538b452e7bd169c4e2b53985d9 https://www.encodeproject.org/files/ENCFF066ONU/@@download/ENCFF066ONU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF934NEI bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF343LTM, ENCFF624TPS 4005719 ENCODE Processing Pipeline 1f1ed3ead872ba5694af582f563d0d81 https://www.encodeproject.org/files/ENCFF934NEI/@@download/ENCFF934NEI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF001XOZ bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001HFX 745778 John Stamatoyannopoulos, UW cdca511167e91115ca5b003bf223e53c https://www.encodeproject.org/files/ENCFF001XOZ/@@download/ENCFF001XOZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF380NLL bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF509ANO, ENCFF714YJQ 3095052 ENCODE Processing Pipeline e9565e54222ac649fc228c1d6c19bc85 https://www.encodeproject.org/files/ENCFF380NLL/@@download/ENCFF380NLL.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF447TGK bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF462CSN, ENCFF508HCX 7014992 ENCODE Processing Pipeline 09b4f31bf7a2f51d844e195cf75df42d https://www.encodeproject.org/files/ENCFF447TGK/@@download/ENCFF447TGK.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001XMY bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HAC 766079 John Stamatoyannopoulos, UW 642d32758871ebed798792c9a8f867fb https://www.encodeproject.org/files/ENCFF001XMY/@@download/ENCFF001XMY.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF532LQQ bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF364PXD, ENCFF610PHZ 3817285 ENCODE Processing Pipeline a0b5b1b9b91a6d0b9a4a0f52496581c7 https://www.encodeproject.org/files/ENCFF532LQQ/@@download/ENCFF532LQQ.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF574RLW bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF441NFC, ENCFF508HCX 7111374 ENCODE Processing Pipeline cf8a5f09dbdfe47045ca6d490ea4c67b https://www.encodeproject.org/files/ENCFF574RLW/@@download/ENCFF574RLW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF349TEE bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF014XIN, ENCFF703KFY 5564974 ENCODE Processing Pipeline e500b057792be6f6547430afa9303e78 https://www.encodeproject.org/files/ENCFF349TEE/@@download/ENCFF349TEE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF809XWY bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF929ULB 6326921 ENCODE Processing Pipeline fcc722041b99b0caa4b16f8e77572445 https://www.encodeproject.org/files/ENCFF809XWY/@@download/ENCFF809XWY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF762DPO bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 2 ENCFF080XQT, ENCFF632LAG, ENCFF980CFV 6710682 ENCODE Processing Pipeline a3a66b6bd31e940c5fd8b6a3bf81c923 https://www.encodeproject.org/files/ENCFF762DPO/@@download/ENCFF762DPO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF122POU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 1820030 ENCODE Processing Pipeline 3996b4cd7ed8486c8ccf3b1580007027 https://www.encodeproject.org/files/ENCFF122POU/@@download/ENCFF122POU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF523ODF bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 4519827 ENCODE Processing Pipeline 2e3e2f6ed744da703d91e8e1370c9b74 https://www.encodeproject.org/files/ENCFF523ODF/@@download/ENCFF523ODF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF916MQB bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 4069521 ENCODE Processing Pipeline 8b4ab6409aa75db4f808f00cfeb1980f https://www.encodeproject.org/files/ENCFF916MQB/@@download/ENCFF916MQB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF961HHN bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 3417919 ENCODE Processing Pipeline 572f7c3e214505beabcacec7b3f66c51 https://www.encodeproject.org/files/ENCFF961HHN/@@download/ENCFF961HHN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF810TPO bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF686SSI, ENCFF901AZD 4567282 ENCODE Processing Pipeline c5d01a2bb3ce1f1091977d749d7e3002 https://www.encodeproject.org/files/ENCFF810TPO/@@download/ENCFF810TPO.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF512HLJ bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 4795321 ENCODE Processing Pipeline 3c17b1179cf2f3456c17a2153ee6c4f8 https://www.encodeproject.org/files/ENCFF512HLJ/@@download/ENCFF512HLJ.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF752POC bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF559IIB, ENCFF620MCZ, ENCFF900ZEG 5034659 ENCODE Processing Pipeline d8b4df92f482063a8f062a353f3e89b0 https://www.encodeproject.org/files/ENCFF752POC/@@download/ENCFF752POC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF368XWG bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 5431250 ENCODE Processing Pipeline 03e3bc481010a522f0be761ea0c49ec1 https://www.encodeproject.org/files/ENCFF368XWG/@@download/ENCFF368XWG.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001XLO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF001GVJ 946215 John Stamatoyannopoulos, UW b9276c97fe64d2aeb9b193e1852d731d https://www.encodeproject.org/files/ENCFF001XLO/@@download/ENCFF001XLO.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF115DAO bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 2 ENCFF251TYG, ENCFF874DYB 4304795 ENCODE Processing Pipeline c8db2b2aab2e1aed3552f27a80ea6a95 https://www.encodeproject.org/files/ENCFF115DAO/@@download/ENCFF115DAO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF866YBG bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF078LPR, ENCFF189JRN, ENCFF436ZGI 5679032 ENCODE Processing Pipeline d9c074312b0a7c04ed8fac5b05a55355 https://www.encodeproject.org/files/ENCFF866YBG/@@download/ENCFF866YBG.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF930KIS bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 4151818 ENCODE Processing Pipeline fe651af8616d0ff1d7b529fa8ae545d9 https://www.encodeproject.org/files/ENCFF930KIS/@@download/ENCFF930KIS.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF796KTU bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF407WOE, ENCFF469INX 4669056 ENCODE Processing Pipeline b080662a3d8db6a185fd4615947e906f https://www.encodeproject.org/files/ENCFF796KTU/@@download/ENCFF796KTU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF814VNW bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF009VFJ, ENCFF248YTS 1629332 ENCODE Processing Pipeline d2859de620b6640f75ada3e783f2f069 https://www.encodeproject.org/files/ENCFF814VNW/@@download/ENCFF814VNW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF446FKN bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF407WPP, ENCFF436BMH, ENCFF880DIZ 4259610 ENCODE Processing Pipeline 35279264f3e0ab7e73c32584f3fdb451 https://www.encodeproject.org/files/ENCFF446FKN/@@download/ENCFF446FKN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF175OAK bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF502ALK 4926544 ENCODE Processing Pipeline aad13ab9cb68b3b55c9bda0c603c69ee https://www.encodeproject.org/files/ENCFF175OAK/@@download/ENCFF175OAK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF185JWL bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF525YRO 5058470 ENCODE Processing Pipeline 93a65a9f20b31a55bc321b949cf33fac https://www.encodeproject.org/files/ENCFF185JWL/@@download/ENCFF185JWL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTW bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HXM 914739 John Stamatoyannopoulos, UW 1564f3e09164f441c6b6b87d8aaf9dd8 https://www.encodeproject.org/files/ENCFF001XTW/@@download/ENCFF001XTW.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF655SOH bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF328BRW, ENCFF823NFU 2728211 ENCODE Processing Pipeline a0247abb24ee37b1c64e2a77ebf176ee https://www.encodeproject.org/files/ENCFF655SOH/@@download/ENCFF655SOH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF753PAD bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF453WTN, ENCFF864UEQ 6522150 ENCODE Processing Pipeline a07a80ab4d763e7203684d5de4a55473 https://www.encodeproject.org/files/ENCFF753PAD/@@download/ENCFF753PAD.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF825VQR bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 179486 ENCODE Processing Pipeline 8c675139cf606e34fb00e7098b1ea42c https://www.encodeproject.org/files/ENCFF825VQR/@@download/ENCFF825VQR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF532VDQ bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF123VAK, ENCFF356DXM 4740720 ENCODE Processing Pipeline 02e839bde6921f2f70918ae05f02055d https://www.encodeproject.org/files/ENCFF532VDQ/@@download/ENCFF532VDQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF432ZAJ bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 2 ENCFF336HSE, ENCFF844ECI, ENCFF879AJU 4588028 ENCODE Processing Pipeline 3eb617841a00bc517609b1395beacdb2 https://www.encodeproject.org/files/ENCFF432ZAJ/@@download/ENCFF432ZAJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRS bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HPS 914710 John Stamatoyannopoulos, UW e4941c4dd7c4f1b48e64f78b287a894a https://www.encodeproject.org/files/ENCFF001XRS/@@download/ENCFF001XRS.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF681HOI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF393HXD, ENCFF628PKL 3876040 ENCODE Processing Pipeline 37fe4fb77504747cd446d054bac925cf https://www.encodeproject.org/files/ENCFF681HOI/@@download/ENCFF681HOI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF374BCB bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF124AWF, ENCFF509ANO 6517166 ENCODE Processing Pipeline 2b7f85d2429f2bcae158980453ddfda3 https://www.encodeproject.org/files/ENCFF374BCB/@@download/ENCFF374BCB.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF644MVI bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 5401132 ENCODE Processing Pipeline 2d9ed99c4264b18ec0eb5cc5200d7a3d https://www.encodeproject.org/files/ENCFF644MVI/@@download/ENCFF644MVI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF163ZFQ bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 2818433 ENCODE Processing Pipeline c6f4e290a05030a7b7d4cb89d6b57354 https://www.encodeproject.org/files/ENCFF163ZFQ/@@download/ENCFF163ZFQ.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF603MIK bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF157DVB, ENCFF248YTS 5314419 ENCODE Processing Pipeline ee5a355f368bb1f332b14bf6fe358d49 https://www.encodeproject.org/files/ENCFF603MIK/@@download/ENCFF603MIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF920STO bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 2 ENCFF442UIU, ENCFF572RFU, ENCFF730IJS 5595559 ENCODE Processing Pipeline aa22a83230d12c3c1501bbe6b932b482 https://www.encodeproject.org/files/ENCFF920STO/@@download/ENCFF920STO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF001XSE bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HRF 776564 John Stamatoyannopoulos, UW 0c1112e2abc6aefb6a2c453d39ab8034 https://www.encodeproject.org/files/ENCFF001XSE/@@download/ENCFF001XSE.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF583GIR bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF007XGO, ENCFF213ZXO 2627094 ENCODE Processing Pipeline f78b903b92860b4aee482b081121c9f2 https://www.encodeproject.org/files/ENCFF583GIR/@@download/ENCFF583GIR.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF242UCP bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF107SKX, ENCFF547HWS 4719580 ENCODE Processing Pipeline b15b40e59b9c3ddb1cf976fea482ddac https://www.encodeproject.org/files/ENCFF242UCP/@@download/ENCFF242UCP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF180IOD bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 2 ENCFF208SHP, ENCFF250VFW, ENCFF345IDF 1664046 ENCODE Processing Pipeline 25edd2cbc14db3f96a0fc4f8ec35b1b7 https://www.encodeproject.org/files/ENCFF180IOD/@@download/ENCFF180IOD.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF001XTS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HWP 859303 John Stamatoyannopoulos, UW 772bfb88e8cf6aad3cae3467a73f969d https://www.encodeproject.org/files/ENCFF001XTS/@@download/ENCFF001XTS.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF116ONS bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF727MWW, ENCFF902PDL 2413791 ENCODE Processing Pipeline 4f2cc4f0d15588e8ef5b158611ddeea3 https://www.encodeproject.org/files/ENCFF116ONS/@@download/ENCFF116ONS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF680RJL bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF675VLP, ENCFF933UZL 4751355 ENCODE Processing Pipeline 38abeff3fc852c44aa7c49eeeadb138d https://www.encodeproject.org/files/ENCFF680RJL/@@download/ENCFF680RJL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XLW bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001GWP 686601 John Stamatoyannopoulos, UW 9a73acbd7472db4a7a7a0192a772fcb1 https://www.encodeproject.org/files/ENCFF001XLW/@@download/ENCFF001XLW.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF940KDS bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 2 ENCFF864XXG, ENCFF873WTQ 4277579 ENCODE Processing Pipeline f0b64264e8de07915ba761ea65af7b29 https://www.encodeproject.org/files/ENCFF940KDS/@@download/ENCFF940KDS.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF039SJR bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF578QOG, ENCFF599MVB 4777767 ENCODE Processing Pipeline a708c703d30c3bf40c1e769353e5b793 https://www.encodeproject.org/files/ENCFF039SJR/@@download/ENCFF039SJR.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF646DRT bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 2 ENCFF610BER, ENCFF898BAG 5095276 ENCODE Processing Pipeline 2802d759fa459b435e634f07e02dd257 https://www.encodeproject.org/files/ENCFF646DRT/@@download/ENCFF646DRT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF038SPJ bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF220EVN, ENCFF960JYT 5468660 ENCODE Processing Pipeline f37bb50273e61791e7b38fac40db20ca https://www.encodeproject.org/files/ENCFF038SPJ/@@download/ENCFF038SPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF479LKN bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 2 ENCFF107SKX, ENCFF954NZI 4433393 ENCODE Processing Pipeline 94fa5d6611ef829f5f3c388c14d144de https://www.encodeproject.org/files/ENCFF479LKN/@@download/ENCFF479LKN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF881ZSX bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 2 ENCFF355ZOB, ENCFF545DZO 4229342 ENCODE Processing Pipeline 0b3344f3b272c6e547f3a91c5c0b799b https://www.encodeproject.org/files/ENCFF881ZSX/@@download/ENCFF881ZSX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF214AAT bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 2 ENCFF555MNQ, ENCFF622MSR 4828973 ENCODE Processing Pipeline 7493298ac1ae24dc05127a63c9198348 https://www.encodeproject.org/files/ENCFF214AAT/@@download/ENCFF214AAT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF631NXF bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF579FIX, ENCFF901AZD, ENCFF966AYA 3892753 ENCODE Processing Pipeline 3b78ed24857b2f33172aacc9e0c4ef5e https://www.encodeproject.org/files/ENCFF631NXF/@@download/ENCFF631NXF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF146YXX bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 937915 ENCODE Processing Pipeline 5a4600cdc6485de1e8feaea493b849e8 https://www.encodeproject.org/files/ENCFF146YXX/@@download/ENCFF146YXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth