ENCFF755KRH bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF350QUB, ENCFF667KBF 6487370 ENCODE Processing Pipeline a216a4a8a142f90b0aee3a2415f9346d https://www.encodeproject.org/files/ENCFF755KRH/@@download/ENCFF755KRH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF312EZM bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6719059 ENCODE Processing Pipeline 71a739dae92c5ca03408ff454f3888de https://www.encodeproject.org/files/ENCFF312EZM/@@download/ENCFF312EZM.bed.gz hg19 released mild to moderate bottlenecking ENCFF794VUJ bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6789866 ENCODE Processing Pipeline 235c938786e379e416bcee3bb756c555 https://www.encodeproject.org/files/ENCFF794VUJ/@@download/ENCFF794VUJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF633NDL bed narrowPeak peaks ENCSR954KIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970GQA 6994768 ENCODE Processing Pipeline 2031eefbc0bb88d75c2dc831948b219a https://www.encodeproject.org/files/ENCFF633NDL/@@download/ENCFF633NDL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF870WRO bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human DNA False 2016-06-13 ENCODE 1 ENCFF122RZR, ENCFF151KAU 6411041 ENCODE Processing Pipeline 7468371d858620d613dcb242d0996952 https://www.encodeproject.org/files/ENCFF870WRO/@@download/ENCFF870WRO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF363FXM bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF079ISN, ENCFF581ZJL 6046627 ENCODE Processing Pipeline 668b680c249969f3157acbe573a4627e https://www.encodeproject.org/files/ENCFF363FXM/@@download/ENCFF363FXM.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF003NLI bed narrowPeak peaks ENCSR531VIJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF310MZC 6570162 ENCODE Processing Pipeline 9417575352a76fdd1e0faf53dba063ba https://www.encodeproject.org/files/ENCFF003NLI/@@download/ENCFF003NLI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF007YBE bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 6563632 ENCODE Processing Pipeline ad014830373e820bb80a858b76bc0a3b https://www.encodeproject.org/files/ENCFF007YBE/@@download/ENCFF007YBE.bed.gz hg19 released antibody characterized with exemption ENCFF358UBC bed narrowPeak peaks ENCSR348JOJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA1-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG 6695357 ENCODE Processing Pipeline 5323de1ce8d1493e877c1d2d59bf3126 https://www.encodeproject.org/files/ENCFF358UBC/@@download/ENCFF358UBC.bed.gz hg19 archived antibody characterized with exemption ENCFF856FKS bed narrowPeak peaks ENCSR756KRS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF595PUD, ENCFF936JKF 5771661 ENCODE Processing Pipeline 808715f13a98f4f910cdb02c9dd57904 https://www.encodeproject.org/files/ENCFF856FKS/@@download/ENCFF856FKS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF225CMV bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human DNA False 2016-03-02 ENCODE 1 ENCFF811OUA, ENCFF930DZH 6133241 ENCODE Processing Pipeline 61a68c1a03eaf0f52bcfe393211fd5ec https://www.encodeproject.org/files/ENCFF225CMV/@@download/ENCFF225CMV.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF730SMH bed narrowPeak peaks ENCSR228ZPZ ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF408OZV 6134577 ENCODE Processing Pipeline 6712d118be7895dc696877572c87883d https://www.encodeproject.org/files/ENCFF730SMH/@@download/ENCFF730SMH.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF828PUB bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human DNA False 2016-03-02 ENCODE 1 ENCFF189PKR, ENCFF578CTB 5546344 ENCODE Processing Pipeline c47fb2cc45bcf3ff555033405150d4b0 https://www.encodeproject.org/files/ENCFF828PUB/@@download/ENCFF828PUB.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF230QTS bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human DNA False 2016-12-19 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF981ZOJ 7251235 ENCODE Processing Pipeline ac03467c13d09b0c060ac98caf91fb99 https://www.encodeproject.org/files/ENCFF230QTS/@@download/ENCFF230QTS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF233SVA bed narrowPeak peaks ENCSR930CPA ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF014UOC, ENCFF300OHV 7101031 ENCODE Processing Pipeline 2d49e6634181766e27cdca2f505122b9 https://www.encodeproject.org/files/ENCFF233SVA/@@download/ENCFF233SVA.bed.gz hg19 released antibody characterized with exemption ENCFF710KBI bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human DNA False 2016-03-02 ENCODE 1 ENCFF099DHX, ENCFF807NZJ 6603746 ENCODE Processing Pipeline 5c96a10199f866ef8d8ff81060efc315 https://www.encodeproject.org/files/ENCFF710KBI/@@download/ENCFF710KBI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF870JMX bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-10-24 ENCODE 1 ENCFF581ZJL, ENCFF795XNL 6627135 ENCODE Processing Pipeline 1936337eec37b48544e0fc591363ca1b https://www.encodeproject.org/files/ENCFF870JMX/@@download/ENCFF870JMX.bed.gz hg19 released antibody characterized with exemption ENCFF576LKG bed narrowPeak peaks ENCSR846TPT ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF632PPF 5428091 ENCODE Processing Pipeline 0b375c428c70248420bd909825e93196 https://www.encodeproject.org/files/ENCFF576LKG/@@download/ENCFF576LKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF246FCW bed narrowPeak peaks ENCSR253OON ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF374DQB, ENCFF927ZZQ 5947796 ENCODE Processing Pipeline adda5de0829bd5fa4cb56dd603a5e9aa https://www.encodeproject.org/files/ENCFF246FCW/@@download/ENCFF246FCW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF347CVK bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human DNA False 2016-01-14 ENCODE 1 ENCFF070QUN, ENCFF387AIX 6644140 ENCODE Processing Pipeline 1973f2cfc89d73a80ac9d8fb35c64493 https://www.encodeproject.org/files/ENCFF347CVK/@@download/ENCFF347CVK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF765AVR bed narrowPeak peaks ENCSR054FKH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-14 ENCODE 1 ENCFF051OAV, ENCFF231YLU 5527136 ENCODE Processing Pipeline eb8d4b0505df6f34667b376971e36816 https://www.encodeproject.org/files/ENCFF765AVR/@@download/ENCFF765AVR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF830SMA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human DNA False 2016-01-14 ENCODE 1 ENCFF675KUA, ENCFF929AIJ 6484837 ENCODE Processing Pipeline 9f337526edf3461d6521791dee0f24c5 https://www.encodeproject.org/files/ENCFF830SMA/@@download/ENCFF830SMA.bed.gz hg19 released missing genetic modification characterization missing mapped reads lengths ENCFF111ZUY bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF986MVN 6725810 ENCODE Processing Pipeline dae84b855bb6d50384574cdcf6723666 https://www.encodeproject.org/files/ENCFF111ZUY/@@download/ENCFF111ZUY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF674FOQ bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2016-06-14 ENCODE 1 ENCFF239DXH, ENCFF581ZJL 6613524 ENCODE Processing Pipeline 68b5c4aee6f13205eba0cc76e6b34593 https://www.encodeproject.org/files/ENCFF674FOQ/@@download/ENCFF674FOQ.bed.gz hg19 released low read depth ENCFF432JWQ bed narrowPeak peaks ENCSR117KWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF207-human DNA False 2014-07-07 ENCODE 1 ENCFF571DSD, ENCFF941TZZ 6777932 ENCODE Processing Pipeline b76707c57c3f129259925cd947b1f208 https://www.encodeproject.org/files/ENCFF432JWQ/@@download/ENCFF432JWQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF157PBO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF138LNW, ENCFF581ZJL 7197429 ENCODE Processing Pipeline 0af8663cfafe4ae8f1f42901e348933e https://www.encodeproject.org/files/ENCFF157PBO/@@download/ENCFF157PBO.bed.gz hg19 released low read depth ENCFF252JHJ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF970IIN 6123031 ENCODE Processing Pipeline 723d9629d91b43ddfa993933a6ac000a https://www.encodeproject.org/files/ENCFF252JHJ/@@download/ENCFF252JHJ.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF199PBO bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF911AAQ 6463924 ENCODE Processing Pipeline c12f8fc6733ef74ba731a112632d4e12 https://www.encodeproject.org/files/ENCFF199PBO/@@download/ENCFF199PBO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF279POO bed narrowPeak peaks ENCSR222SQE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF590YRR, ENCFF882RAK 7170449 ENCODE Processing Pipeline 49b0fde64fd93714da5d66d6bf53f219 https://www.encodeproject.org/files/ENCFF279POO/@@download/ENCFF279POO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF243AWG bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human DNA False 2017-01-31 ENCODE 1 ENCFF591PYL, ENCFF748QNI 6702271 ENCODE Processing Pipeline 48e73ba4a2edbd11ad5617c5bae35faa https://www.encodeproject.org/files/ENCFF243AWG/@@download/ENCFF243AWG.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms ENCFF986TTQ bed narrowPeak peaks ENCSR132XRW ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF129PLZ, ENCFF791LLR 6397192 ENCODE Processing Pipeline bb05de6435d61b4c6f4b3e43f13f3bc5 https://www.encodeproject.org/files/ENCFF986TTQ/@@download/ENCFF986TTQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF013FRY bed narrowPeak peaks ENCSR304IVU ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF194CKI, ENCFF919PUP 5908109 ENCODE Processing Pipeline 48d3893bce9bd0bdb21bb7d65fa9ed56 https://www.encodeproject.org/files/ENCFF013FRY/@@download/ENCFF013FRY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF230IDW bed narrowPeak peaks ENCSR661NXJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF021JJL, ENCFF919PUP 6734617 ENCODE Processing Pipeline 4894bdd4a9bce3552cb6a0c1123fb0be https://www.encodeproject.org/files/ENCFF230IDW/@@download/ENCFF230IDW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF088TUO bed narrowPeak peaks ENCSR558HTE ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF263IJB, ENCFF570YAA 4655953 ENCODE Processing Pipeline e5c8b9aff0b2a9efeacc424525f999b2 https://www.encodeproject.org/files/ENCFF088TUO/@@download/ENCFF088TUO.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF913GNW bed narrowPeak peaks ENCSR429JTR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF726KOK 5526232 ENCODE Processing Pipeline 30e19fa28b5af368754c5bc6f9a9905e https://www.encodeproject.org/files/ENCFF913GNW/@@download/ENCFF913GNW.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF057GKG bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF821TOA 6650101 ENCODE Processing Pipeline c685a5d1d610d6d4d42b6e64e6cba59b https://www.encodeproject.org/files/ENCFF057GKG/@@download/ENCFF057GKG.bed.gz hg19 released ENCFF618NMD bed narrowPeak peaks ENCSR769WKR ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-07-08 ENCODE 1 ENCFF267XAF, ENCFF972JKW 5609470 ENCODE Processing Pipeline 749bb05ad9a11d370a9568a6d71ca03a https://www.encodeproject.org/files/ENCFF618NMD/@@download/ENCFF618NMD.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF348YEE bed narrowPeak peaks ENCSR107EUS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF267XAF, ENCFF965QNY 4831888 ENCODE Processing Pipeline da09fae2ecaad51979dbe193ebdecd59 https://www.encodeproject.org/files/ENCFF348YEE/@@download/ENCFF348YEE.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF544REW bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF634JQQ 6694070 ENCODE Processing Pipeline 59eacda1b4c81306cc76878e34ac55dd https://www.encodeproject.org/files/ENCFF544REW/@@download/ENCFF544REW.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF875DLM bed narrowPeak peaks ENCSR714EQS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF444SZG, ENCFF622CTL 6930376 ENCODE Processing Pipeline 4d4177385f67999c819446a179bae721 https://www.encodeproject.org/files/ENCFF875DLM/@@download/ENCFF875DLM.bed.gz hg19 released antibody characterized with exemption ENCFF343WCZ bed narrowPeak peaks ENCSR117CHD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HOMEZ-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF942LEC 6526342 ENCODE Processing Pipeline d65e164e6f456a4f27abcbe844f3b8b1 https://www.encodeproject.org/files/ENCFF343WCZ/@@download/ENCFF343WCZ.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF623DIA bed narrowPeak peaks ENCSR170NMC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF201UJX, ENCFF603NZR 6780853 ENCODE Processing Pipeline 011af19b49f81fe00b87b10b268c2bfd https://www.encodeproject.org/files/ENCFF623DIA/@@download/ENCFF623DIA.bed.gz hg19 released antibody characterized with exemption ENCFF350LWS bed narrowPeak peaks ENCSR192AFN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX8-human DNA False 2017-11-30 ENCODE 1 ENCFF400NRC, ENCFF592WAL 6593975 ENCODE Processing Pipeline 5d042bfd10651e0eaa3f9752367e2e13 https://www.encodeproject.org/files/ENCFF350LWS/@@download/ENCFF350LWS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF371FPA bed narrowPeak peaks ENCSR949IWY ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PAX8-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF667QTL, ENCFF823USR 6696970 ENCODE Processing Pipeline f909c228192449508da5c67159b40045 https://www.encodeproject.org/files/ENCFF371FPA/@@download/ENCFF371FPA.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF609XUG bed narrowPeak peaks ENCSR677FYM ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF630UCU 4845814 ENCODE Processing Pipeline d0aee8a8266310980417af38dbdde8f9 https://www.encodeproject.org/files/ENCFF609XUG/@@download/ENCFF609XUG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF216KHO bed narrowPeak peaks ENCSR988ZSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RERE-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF806KRN 5910176 ENCODE Processing Pipeline 40d3d7514044efd8001f18fd7caf080a https://www.encodeproject.org/files/ENCFF216KHO/@@download/ENCFF216KHO.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF743CIS bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF463KKL, ENCFF581ZJL 6703465 ENCODE Processing Pipeline f4e5c9c63dc8c1100f49bb50b9cad7b2 https://www.encodeproject.org/files/ENCFF743CIS/@@download/ENCFF743CIS.bed.gz hg19 released ENCFF770ZZB bed narrowPeak peaks ENCSR616OSG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF322PIR 7088347 ENCODE Processing Pipeline 410811b01a5019cba7effd86538b328d https://www.encodeproject.org/files/ENCFF770ZZB/@@download/ENCFF770ZZB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF628ATN bed narrowPeak peaks ENCSR331ORD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CREB1-human DNA False 2016-06-14 ENCODE 1 ENCFF106GMN, ENCFF447GXR 6500122 ENCODE Processing Pipeline c030a9fddb8205541b2c73d382c99b35 https://www.encodeproject.org/files/ENCFF628ATN/@@download/ENCFF628ATN.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF010BAD bed narrowPeak peaks ENCSR038FOS ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF419SAO, ENCFF905DKC 4479586 ENCODE Processing Pipeline 3935b26910c7d2eca43ec8bf0f29a22f https://www.encodeproject.org/files/ENCFF010BAD/@@download/ENCFF010BAD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF372LOW bed narrowPeak peaks ENCSR911JAX ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2016-11-29 ENCODE 1 ENCFF574DCD, ENCFF942GWO 6235445 ENCODE Processing Pipeline 43b45774277a43c65a31f96f9d84a899 https://www.encodeproject.org/files/ENCFF372LOW/@@download/ENCFF372LOW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF501DZY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF568FRV, ENCFF581ZJL 6216671 ENCODE Processing Pipeline 930752e7e889e06e0e3a436fa59bb5ef https://www.encodeproject.org/files/ENCFF501DZY/@@download/ENCFF501DZY.bed.gz hg19 released low read depth ENCFF620DNX bed narrowPeak peaks ENCSR102CSD ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF051HDO, ENCFF908GSJ 6836392 ENCODE Processing Pipeline 8da83cc93e5aa7b42fc58f8a6577596a https://www.encodeproject.org/files/ENCFF620DNX/@@download/ENCFF620DNX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF260MCD bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human DNA False 2016-09-27 ENCODE 1 ENCFF508SEX, ENCFF581ZJL 6644738 ENCODE Processing Pipeline 38fc5094fedb938a0cd694b3d2ffd88e https://www.encodeproject.org/files/ENCFF260MCD/@@download/ENCFF260MCD.bed.gz hg19 released ENCFF263MQY bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA False 2016-07-08 ENCODE 1 ENCFF160VXC, ENCFF478OFO 7015651 ENCODE Processing Pipeline 9dafa63525ad4fba374d03ff634f5cdd https://www.encodeproject.org/files/ENCFF263MQY/@@download/ENCFF263MQY.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO ENCFF447QUH bed narrowPeak peaks ENCSR412ZDC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-AHR-human DNA False 2018-02-10 ENCODE 1 ENCFF971DOF 6225304 ENCODE Processing Pipeline 3002bf6fad98dcca32ffe8354fd5a7f2 https://www.encodeproject.org/files/ENCFF447QUH/@@download/ENCFF447QUH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF588ZYR bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human DNA False 2016-01-14 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC 6374559 ENCODE Processing Pipeline c33c3673740b566fbda54f4be7e1c3de https://www.encodeproject.org/files/ENCFF588ZYR/@@download/ENCFF588ZYR.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF103IWV bed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF146-human DNA False 2018-03-16 ENCODE 1 ENCFF061QOJ, ENCFF657MSB 5575003 ENCODE Processing Pipeline 4121a132e5bc5312012440d570322a3a https://www.encodeproject.org/files/ENCFF103IWV/@@download/ENCFF103IWV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF162LKJ bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF571KDO, ENCFF834TUP 6957983 ENCODE Processing Pipeline 7320713e5f6becb5840da5d1bc1c7f89 https://www.encodeproject.org/files/ENCFF162LKJ/@@download/ENCFF162LKJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF963EUU bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human DNA False 2016-01-14 ENCODE 1 ENCFF124VCI, ENCFF936MBZ 5923434 ENCODE Processing Pipeline d068345d605435fcf94906b86ce05688 https://www.encodeproject.org/files/ENCFF963EUU/@@download/ENCFF963EUU.bed.gz hg19 released missing genetic modification characterization ENCFF539OHR bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF907MUS 5029003 ENCODE Processing Pipeline 139796eb1ef6b10e47dd7dcd30db30a3 https://www.encodeproject.org/files/ENCFF539OHR/@@download/ENCFF539OHR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF779QTR bed narrowPeak peaks ENCSR899JSO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF282SQP, ENCFF745BKE 6480153 ENCODE Processing Pipeline 439031ea4ee45d2a7377621e80087599 https://www.encodeproject.org/files/ENCFF779QTR/@@download/ENCFF779QTR.bed.gz hg19 released antibody characterized with exemption ENCFF658QMA bed narrowPeak peaks ENCSR822AHX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-06-23 ENCODE 1 ENCFF170QWA, ENCFF592WAL, ENCFF901CND 7059027 ENCODE Processing Pipeline 388cc423bf31f1db19df68636bb8fb5e https://www.encodeproject.org/files/ENCFF658QMA/@@download/ENCFF658QMA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF172UOB bed narrowPeak peaks ENCSR041XML ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA False 2018-01-26 ENCODE 1 ENCFF245PXJ, ENCFF592WAL 6178196 ENCODE Processing Pipeline 4426a4ea966e640b31b13fc2e2836553 https://www.encodeproject.org/files/ENCFF172UOB/@@download/ENCFF172UOB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF244YZX bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-06-14 ENCODE 1 ENCFF175TNH, ENCFF581ZJL 6318220 ENCODE Processing Pipeline 7690abbf3fc7c97d08a017e957604a05 https://www.encodeproject.org/files/ENCFF244YZX/@@download/ENCFF244YZX.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF431GOQ bed narrowPeak peaks ENCSR680UQE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF2-human DNA False 2017-02-21 ENCODE 1 ENCFF405TSG, ENCFF901CND 6827192 ENCODE Processing Pipeline eab27a127aef882b18d69401c9b98761 https://www.encodeproject.org/files/ENCFF431GOQ/@@download/ENCFF431GOQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF524RDY bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF167RGS, ENCFF581ZJL 6933055 ENCODE Processing Pipeline 1c3305645ee0244fa7084996518070cd https://www.encodeproject.org/files/ENCFF524RDY/@@download/ENCFF524RDY.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF557TVO bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF632RLI 5143877 ENCODE Processing Pipeline 55c4690cdda179c321aef754b40da277 https://www.encodeproject.org/files/ENCFF557TVO/@@download/ENCFF557TVO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF682ZLL bed narrowPeak peaks ENCSR445ACU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX13-human DNA False 2016-06-13 ENCODE 1 ENCFF162LLQ, ENCFF419TYN 5356830 ENCODE Processing Pipeline fc900361c68396ee9761d67bcf3aaaf1 https://www.encodeproject.org/files/ENCFF682ZLL/@@download/ENCFF682ZLL.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF212ABS bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF402MOS, ENCFF493QSH 2984149 ENCODE Processing Pipeline 274b166d82e9466f2143e4a7394ec866 https://www.encodeproject.org/files/ENCFF212ABS/@@download/ENCFF212ABS.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF051PEB bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human DNA False 2017-06-29 ENCODE 1 ENCFF581ZJL, ENCFF588VIM 6977902 ENCODE Processing Pipeline 46cb8d9c3077842332aab8b6a0696bd2 https://www.encodeproject.org/files/ENCFF051PEB/@@download/ENCFF051PEB.bed.gz hg19 released mild to moderate bottlenecking ENCFF351DKB bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human DNA False 2017-05-17 ENCODE 1 ENCFF160VXC, ENCFF822VWX, ENCFF834TUP 7258939 ENCODE Processing Pipeline 96bc24b8a37c141356d2d757d60d26ec https://www.encodeproject.org/files/ENCFF351DKB/@@download/ENCFF351DKB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms ENCFF133EYO bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF019NMV, ENCFF581ZJL 6905870 ENCODE Processing Pipeline 593a7b157fdd9fe7c6683d3eb14892e2 https://www.encodeproject.org/files/ENCFF133EYO/@@download/ENCFF133EYO.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF241QBV bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF775ZRK, ENCFF891YJS 6254539 ENCODE Processing Pipeline c7fb7fb7e8669a0f4968aeb0331a514c https://www.encodeproject.org/files/ENCFF241QBV/@@download/ENCFF241QBV.bed.gz hg19 released missing genetic modification characterization ENCFF165OLG bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-10-11 ENCODE 1 ENCFF561GSY, ENCFF581ZJL 7194804 ENCODE Processing Pipeline 3ee7173d67a0ae3c64c577669ba2e544 https://www.encodeproject.org/files/ENCFF165OLG/@@download/ENCFF165OLG.bed.gz hg19 released ENCFF298ANN bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-09-27 ENCODE 1 ENCFF477POF, ENCFF581ZJL 6668549 ENCODE Processing Pipeline fe70ba76f997927a58faceef760078aa https://www.encodeproject.org/files/ENCFF298ANN/@@download/ENCFF298ANN.bed.gz hg19 released ENCFF373TEW bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human DNA False 2016-06-13 ENCODE 1 ENCFF577QBK, ENCFF845ZLZ 6929023 ENCODE Processing Pipeline 70ec6f6f31e08f34de4b50bd339f9dd7 https://www.encodeproject.org/files/ENCFF373TEW/@@download/ENCFF373TEW.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF456VQO bed narrowPeak peaks ENCSR183AXJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF699MFO 5702987 ENCODE Processing Pipeline 95ef0417c5bb74b9e7bb3b6ba868331d https://www.encodeproject.org/files/ENCFF456VQO/@@download/ENCFF456VQO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF086YFF bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF430WBQ, ENCFF871NUZ 6419348 ENCODE Processing Pipeline f19df16c5a6e5229aab8f0c4954f97a1 https://www.encodeproject.org/files/ENCFF086YFF/@@download/ENCFF086YFF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF335ZZX bed narrowPeak peaks ENCSR382MOM ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF140FDZ, ENCFF871NUZ 6592953 ENCODE Processing Pipeline ddb424f59e5fc822d1779b7d9f955e99 https://www.encodeproject.org/files/ENCFF335ZZX/@@download/ENCFF335ZZX.bed.gz hg19 archived mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF017KJV bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF304NXG, ENCFF437NVC, ENCFF994YBV 6289150 ENCODE Processing Pipeline 3e62bfe71d8297b8a056cdb03c11a8e6 https://www.encodeproject.org/files/ENCFF017KJV/@@download/ENCFF017KJV.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF175OWR bed narrowPeak peaks ENCSR103SZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TFAP4-human DNA False 2016-03-11 ENCODE 1 ENCFF356JMK, ENCFF437NVC, ENCFF994YBV 6452225 ENCODE Processing Pipeline 3d953209576895e0d22ecd9a876406a0 https://www.encodeproject.org/files/ENCFF175OWR/@@download/ENCFF175OWR.bed.gz hg19 archived borderline replicate concordance, low read depth ENCFF357VCS bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human DNA False 2016-08-24 ENCODE 1 ENCFF187NQM, ENCFF267TAG 7293894 ENCODE Processing Pipeline 518350f213fd7e62dcdac573752d7de7 https://www.encodeproject.org/files/ENCFF357VCS/@@download/ENCFF357VCS.bed.gz hg19 released missing genetic modification characterization ENCFF606MZK bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2016-06-16 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ 5843860 ENCODE Processing Pipeline 951c843562da6d636f7e4f4647195342 https://www.encodeproject.org/files/ENCFF606MZK/@@download/ENCFF606MZK.bed.gz hg19 released low read depth, moderate library complexity ENCFF529XXM bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF316KPP 6344339 ENCODE Processing Pipeline 43f83bf1dc78f5a3aef040cdef281e49 https://www.encodeproject.org/files/ENCFF529XXM/@@download/ENCFF529XXM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF618FBU bed narrowPeak peaks ENCSR369NGL ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POLR2AphosphoS5-human DNA False 2016-08-09 ENCODE 1 ENCFF017YFK, ENCFF778QKS 6474544 ENCODE Processing Pipeline 3e79ba93fd8141123efa25622e40714d https://www.encodeproject.org/files/ENCFF618FBU/@@download/ENCFF618FBU.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF838ABE bed narrowPeak peaks ENCSR860UHK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBFB-human DNA False 2016-06-13 ENCODE 1 ENCFF328CQA, ENCFF445QVI, ENCFF935ZWS 6510385 ENCODE Processing Pipeline fb26371bb0f418ebd525bfad0e747028 https://www.encodeproject.org/files/ENCFF838ABE/@@download/ENCFF838ABE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF617HUR bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF192MTR, ENCFF200LFK, ENCFF321UJV 6221045 ENCODE Processing Pipeline 9f26e32201c2110c70ee688f83fbc51b https://www.encodeproject.org/files/ENCFF617HUR/@@download/ENCFF617HUR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF775AMH bed narrowPeak peaks ENCSR338MMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-24 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF994LTR 6419949 ENCODE Processing Pipeline 426b4aad5128d4f275f3ab001bb35a13 https://www.encodeproject.org/files/ENCFF775AMH/@@download/ENCFF775AMH.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF136ODS bed narrowPeak peaks ENCSR848YWD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZMYM3-human DNA False 2016-09-23 ENCODE 1 ENCFF844NZR, ENCFF929OSU 5964046 ENCODE Processing Pipeline be3f58a9c5d39356def9ef240208e6e5 https://www.encodeproject.org/files/ENCFF136ODS/@@download/ENCFF136ODS.bed.gz hg19 released low read depth, antibody characterized with exemption, mixed read lengths ENCFF436LYU bed narrowPeak peaks ENCSR853ADA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF213IBE, ENCFF850ZDJ 5709650 ENCODE Processing Pipeline 6b343ead7d115e6b752ee6c132f97a7f https://www.encodeproject.org/files/ENCFF436LYU/@@download/ENCFF436LYU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF530ZYM bed narrowPeak peaks ENCSR415AEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF48-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF553BFP 6933467 ENCODE Processing Pipeline 1a22c0fdb31099eea0a157fc240e41d7 https://www.encodeproject.org/files/ENCFF530ZYM/@@download/ENCFF530ZYM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF191KTX bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF899ORC 6850176 ENCODE Processing Pipeline d6d781cc28f8d5798a2b30c9215d71be https://www.encodeproject.org/files/ENCFF191KTX/@@download/ENCFF191KTX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF960ASZ bed narrowPeak peaks ENCSR427BBI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MLLT1-human DNA False 2016-06-14 ENCODE 1 ENCFF288XHQ, ENCFF583FAG 5979369 ENCODE Processing Pipeline 7bfba58b6d1de5310acd4c6e47da5fde https://www.encodeproject.org/files/ENCFF960ASZ/@@download/ENCFF960ASZ.bed.gz hg19 released ENCFF747PUI bed narrowPeak peaks ENCSR955BIB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF300XKS, ENCFF336YLG 6466857 ENCODE Processing Pipeline cffd4c21e3adb5a3b1c38609954c2b86 https://www.encodeproject.org/files/ENCFF747PUI/@@download/ENCFF747PUI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF173TPC bed narrowPeak peaks ENCSR252XWG ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF191LEP, ENCFF546PNW 6259235 ENCODE Processing Pipeline e513594478f6683c4ed945a918cd417a https://www.encodeproject.org/files/ENCFF173TPC/@@download/ENCFF173TPC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF613ONR bed narrowPeak peaks ENCSR231YFE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB33-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF973SCA 5581607 ENCODE Processing Pipeline 6090cd15d03b360d1d73e80487525780 https://www.encodeproject.org/files/ENCFF613ONR/@@download/ENCFF613ONR.bed.gz hg19 released borderline replicate concordance ENCFF512ZVD bed narrowPeak peaks ENCSR006WUS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NEUROD1-human DNA False 2018-01-26 ENCODE 1 ENCFF507XLD, ENCFF583FAG 6419709 ENCODE Processing Pipeline e5228703456608c4e83bc33db9424352 https://www.encodeproject.org/files/ENCFF512ZVD/@@download/ENCFF512ZVD.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF029FHZ bed narrowPeak peaks ENCSR903ELW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CREM-human DNA False 2016-08-24 ENCODE 1 ENCFF108FPL, ENCFF322CDL, ENCFF969DYI 6550732 ENCODE Processing Pipeline 5eb05c692477dab690944ae9c11ba30e https://www.encodeproject.org/files/ENCFF029FHZ/@@download/ENCFF029FHZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF281ART bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human DNA False 2016-08-24 ENCODE 1 ENCFF228QPG, ENCFF319TDX 7026067 ENCODE Processing Pipeline 5490a96c5eee9cf6b27d1b2931a9ab2e https://www.encodeproject.org/files/ENCFF281ART/@@download/ENCFF281ART.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF696NDZ bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-07-28 ENCODE 1 ENCFF050ZWR, ENCFF581ZJL 6922724 ENCODE Processing Pipeline cdeff180b250f2f1f3a024f0da98ba52 https://www.encodeproject.org/files/ENCFF696NDZ/@@download/ENCFF696NDZ.bed.gz hg19 released low read depth ENCFF800RTH bed narrowPeak peaks ENCSR635OSG ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF825RNP 4753523 ENCODE Processing Pipeline 0a46fef5ed8a49e0b755e7e6483fce5c https://www.encodeproject.org/files/ENCFF800RTH/@@download/ENCFF800RTH.bed.gz hg19 released low read length, antibody characterized with exemption, inconsistent target of control experiment experiment not submitted to GEO missing input control ENCFF620TDM bed narrowPeak peaks ENCSR072GJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF206GMY 6787270 ENCODE Processing Pipeline 79900484dce7fb22875f97caa569e21d https://www.encodeproject.org/files/ENCFF620TDM/@@download/ENCFF620TDM.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF133TBZ bed narrowPeak peaks ENCSR792MZV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MYRF-human DNA False 2018-02-10 ENCODE 1 ENCFF456NXL 5581188 ENCODE Processing Pipeline b6193d93e2d754cd6791341ecdf9d64c https://www.encodeproject.org/files/ENCFF133TBZ/@@download/ENCFF133TBZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF877QMQ bed narrowPeak peaks ENCSR692ILH ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF370DPP, ENCFF403WUZ 6430493 ENCODE Processing Pipeline cbce1ae827e70b00ddb3b8346d602677 https://www.encodeproject.org/files/ENCFF877QMQ/@@download/ENCFF877QMQ.bed.gz hg19 released antibody characterized with exemption ENCFF142PDO bed narrowPeak peaks ENCSR776AEL ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF080WMH, ENCFF880RWA 3956703 ENCODE Processing Pipeline 41b35e5618e558377cb578e258e6e7a7 https://www.encodeproject.org/files/ENCFF142PDO/@@download/ENCFF142PDO.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF091FKF bed narrowPeak peaks ENCSR501NSC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN26-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764JDZ 6736798 ENCODE Processing Pipeline d2c9f744c51595bdbef60dd3af01647f https://www.encodeproject.org/files/ENCFF091FKF/@@download/ENCFF091FKF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF810EAC bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF411PRP, ENCFF581ZJL 6721746 ENCODE Processing Pipeline 5cc4b114acb6825cc1974b8168d3c37e https://www.encodeproject.org/files/ENCFF810EAC/@@download/ENCFF810EAC.bed.gz hg19 released low read depth ENCFF846YGT bed narrowPeak peaks ENCSR917QNE ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF200LFK, ENCFF231NPN, ENCFF235CCD 6917938 ENCODE Processing Pipeline da9ca8dbb874b2b094e90ef812bee635 https://www.encodeproject.org/files/ENCFF846YGT/@@download/ENCFF846YGT.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF607MHD bed narrowPeak peaks ENCSR634ZGP ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens UBTF-human DNA False 2016-07-28 ENCODE 1 ENCFF008CNQ, ENCFF132FAW 5768302 ENCODE Processing Pipeline 9eb4aaa343e9f803ba88697c46b66aea https://www.encodeproject.org/files/ENCFF607MHD/@@download/ENCFF607MHD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF081YIR bed narrowPeak peaks ENCSR702BYX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF952LEG 6296567 ENCODE Processing Pipeline 4f4d00a21826bc04487dbcdd6fac150e https://www.encodeproject.org/files/ENCFF081YIR/@@download/ENCFF081YIR.bed.gz hg19 released ENCFF063GQS bed narrowPeak peaks ENCSR196HGZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF763BJA, ENCFF991UTU 6364179 ENCODE Processing Pipeline 73c9e6ffd398f7b1525634dbeab99bbf https://www.encodeproject.org/files/ENCFF063GQS/@@download/ENCFF063GQS.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample ENCFF720BVJ bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2017-01-27 ENCODE 1 ENCFF057NCM, ENCFF581ZJL 7096882 ENCODE Processing Pipeline 5642da1c0113cedbfd494e26d8fe70cc https://www.encodeproject.org/files/ENCFF720BVJ/@@download/ENCFF720BVJ.bed.gz hg19 released antibody characterized with exemption ENCFF381BVK bed narrowPeak peaks ENCSR094ZCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF450MML, ENCFF471EXM 6000427 ENCODE Processing Pipeline 3056b1a034fc75f667da081b1b1b2d45 https://www.encodeproject.org/files/ENCFF381BVK/@@download/ENCFF381BVK.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF954EOW bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF952MSU 6924185 ENCODE Processing Pipeline d52ba4e7f65b735d615e3d4954ce9202 https://www.encodeproject.org/files/ENCFF954EOW/@@download/ENCFF954EOW.bed.gz hg19 released mild to moderate bottlenecking ENCFF729LTY bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human DNA False 2018-01-26 ENCODE 1 ENCFF264TYT, ENCFF581ZJL 7099146 ENCODE Processing Pipeline 628d0b785b60b2ee6aac7fdeaa4cb08a https://www.encodeproject.org/files/ENCFF729LTY/@@download/ENCFF729LTY.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF435XEZ bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF567MOA, ENCFF654EHF, ENCFF991UTU 6362369 ENCODE Processing Pipeline 0be7388e3daa3282e816f915b1749e17 https://www.encodeproject.org/files/ENCFF435XEZ/@@download/ENCFF435XEZ.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF579AYO bed narrowPeak peaks ENCSR994YLZ ChIP-seq UBERON:0002107 liver tissue Homo sapiens YY1-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF776IMT, ENCFF991UTU 6497543 ENCODE Processing Pipeline edb26bc092e26f4bc99fed9e119d9990 https://www.encodeproject.org/files/ENCFF579AYO/@@download/ENCFF579AYO.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF113EKC bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6766643 ENCODE Processing Pipeline 004b8c0ba595469c62a2df0a692f1732 https://www.encodeproject.org/files/ENCFF113EKC/@@download/ENCFF113EKC.bed.gz hg19 released mild to moderate bottlenecking ENCFF263SML bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6840897 ENCODE Processing Pipeline 3d9c51ef3db7280749befdb5d623ea1f https://www.encodeproject.org/files/ENCFF263SML/@@download/ENCFF263SML.bed.gz hg19 archived mild to moderate bottlenecking ENCFF052MLC bed narrowPeak peaks ENCSR551MLB ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF719ASG 5164567 ENCODE Processing Pipeline 564e358518e174fd8563fa6c0eef389d https://www.encodeproject.org/files/ENCFF052MLC/@@download/ENCFF052MLC.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF853YEV bed narrowPeak peaks ENCSR617RSQ ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF112OEB, ENCFF153HRH, ENCFF186LRX 7130030 ENCODE Processing Pipeline f42d062f5574d7c2034d46af3d87d5c2 https://www.encodeproject.org/files/ENCFF853YEV/@@download/ENCFF853YEV.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF285ODQ bed narrowPeak peaks ENCSR844PVS ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-11-01 ENCODE 1 ENCFF149VZU, ENCFF437XIH 7110981 ENCODE Processing Pipeline 96495d5e4402340ae4ae01a383537ee0 https://www.encodeproject.org/files/ENCFF285ODQ/@@download/ENCFF285ODQ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF124PUR bed narrowPeak peaks ENCSR434MWV ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF875VJU, ENCFF880RWA 5314711 ENCODE Processing Pipeline a45c18632d08ae3df4ab9ce70d263959 https://www.encodeproject.org/files/ENCFF124PUR/@@download/ENCFF124PUR.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF032UMZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF948RVR 6940315 ENCODE Processing Pipeline 7fe98b1db8a51da117e0bb6035488924 https://www.encodeproject.org/files/ENCFF032UMZ/@@download/ENCFF032UMZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF620EUP bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF682WTZ, ENCFF834TUP 7172221 ENCODE Processing Pipeline 1dfaa7944b26740a476409b2fbc05319 https://www.encodeproject.org/files/ENCFF620EUP/@@download/ENCFF620EUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF625OET bed narrowPeak peaks ENCSR886KKK ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day EZH2phosphoT487-human DNA False 2016-11-23 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF692UAE 7193333 ENCODE Processing Pipeline 39c6a1d6ff2c03d44c0b0a0cd0abc75c https://www.encodeproject.org/files/ENCFF625OET/@@download/ENCFF625OET.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF142FYE bed narrowPeak peaks ENCSR911GFJ ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF744HKB, ENCFF928FSC 5990872 ENCODE Processing Pipeline f8dd3e03ef057fbc2f714c956e7f72d8 https://www.encodeproject.org/files/ENCFF142FYE/@@download/ENCFF142FYE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF898EEY bed narrowPeak peaks ENCSR872BOU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXK2-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF714SYF, ENCFF772FBN 6910838 ENCODE Processing Pipeline f42633570bd73eb713c2e9cdc00b5c5c https://www.encodeproject.org/files/ENCFF898EEY/@@download/ENCFF898EEY.bed.gz hg19 released mild to moderate bottlenecking ENCFF135KRY bed narrowPeak peaks ENCSR826YMT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SMAD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF868KHL 6587417 ENCODE Processing Pipeline 0a9db420a0a052781c830864eab79ae6 https://www.encodeproject.org/files/ENCFF135KRY/@@download/ENCFF135KRY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF756HQJ bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF761ADG 6458710 ENCODE Processing Pipeline 47860d386d60296bafaba33d7797af80 https://www.encodeproject.org/files/ENCFF756HQJ/@@download/ENCFF756HQJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF494HET bed narrowPeak peaks ENCSR889GGV ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day POLR2AphosphoS5-human DNA False 2016-10-12 ENCODE 1 ENCFF568JWW, ENCFF829HKP, ENCFF876ZSM 6338679 ENCODE Processing Pipeline 64d58df1142ed1b7e9639e7afeaf50a6 https://www.encodeproject.org/files/ENCFF494HET/@@download/ENCFF494HET.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF764LKV bed narrowPeak peaks ENCSR839SFJ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day SMARCA4-human DNA False 2016-11-02 ENCODE 1 ENCFF506GHT, ENCFF829HKP 5339710 ENCODE Processing Pipeline 2f06292ed2403141ca58fc1cea1a60e5 https://www.encodeproject.org/files/ENCFF764LKV/@@download/ENCFF764LKV.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF484TJY bed narrowPeak peaks ENCSR736BUG ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF475SVL 5724092 ENCODE Processing Pipeline 05d2bd2e4c29d2d4d58ec91760b0afb0 https://www.encodeproject.org/files/ENCFF484TJY/@@download/ENCFF484TJY.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF183ZZZ bed narrowPeak peaks ENCSR098XMN ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2018-02-06 ENCODE 1 ENCFF321UJV, ENCFF409VUE 6281346 ENCODE Processing Pipeline df0168efb952e7c4434ea0f9c41b7a00 https://www.encodeproject.org/files/ENCFF183ZZZ/@@download/ENCFF183ZZZ.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF685NUU bed narrowPeak peaks ENCSR549NPZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX3-human DNA False 2016-11-23 ENCODE 1 ENCFF177HNF, ENCFF602SNK, ENCFF620EZL 6315866 ENCODE Processing Pipeline e2c7d4c65e357d207437d90dd53fb2c5 https://www.encodeproject.org/files/ENCFF685NUU/@@download/ENCFF685NUU.bed.gz hg19 released low read depth ENCFF477OXP bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human DNA False 2017-07-28 ENCODE 1 ENCFF581ZJL, ENCFF829QRY 6484621 ENCODE Processing Pipeline fa90de3cfac4674edf9523388e31ccf6 https://www.encodeproject.org/files/ENCFF477OXP/@@download/ENCFF477OXP.bed.gz hg19 released antibody characterized with exemption ENCFF844TQX bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-03-30 ENCODE 1 ENCFF107VJA, ENCFF444TNY 6439920 ENCODE Processing Pipeline 282e4782f8494d85976bcf5d26aef0a7 https://www.encodeproject.org/files/ENCFF844TQX/@@download/ENCFF844TQX.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF770RZT bed narrowPeak peaks ENCSR096IIB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ETV5-human DNA False 2018-02-10 ENCODE 1 ENCFF511WMB 5964926 ENCODE Processing Pipeline 4fcffece5777b5b360e87822c93c5b5b https://www.encodeproject.org/files/ENCFF770RZT/@@download/ENCFF770RZT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF998ZZB bed narrowPeak peaks ENCSR157CEN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF205-human DNA False 2018-02-10 ENCODE 1 ENCFF668QAW 6570414 ENCODE Processing Pipeline bdf447bdf52e9686f821b220728802b4 https://www.encodeproject.org/files/ENCFF998ZZB/@@download/ENCFF998ZZB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF335AYY bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2017-04-14 ENCODE 1 ENCFF309ASH, ENCFF666KPK 7134776 ENCODE Processing Pipeline 7003592965f9b217550bb6548c2dd4f1 https://www.encodeproject.org/files/ENCFF335AYY/@@download/ENCFF335AYY.bed.gz hg19 released missing genetic modification characterization ENCFF447RTB bed narrowPeak peaks ENCSR238QRG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBX3-human DNA False 2017-01-31 ENCODE 1 ENCFF172XZA, ENCFF274SQL, ENCFF843IXX 7270532 ENCODE Processing Pipeline 4898a94c71cd8c47b40ffc41fc9fff9b https://www.encodeproject.org/files/ENCFF447RTB/@@download/ENCFF447RTB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, antibody characterized with exemption ENCFF455KIL bed narrowPeak peaks ENCSR096LSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF311-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF952ZLK 6651790 ENCODE Processing Pipeline 120cf01590b951289afc54857a6160cf https://www.encodeproject.org/files/ENCFF455KIL/@@download/ENCFF455KIL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF918LPX bed narrowPeak peaks ENCSR201GGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIL3-human DNA False 2016-11-08 ENCODE 1 ENCFF176ZRH, ENCFF203ABR 6209851 ENCODE Processing Pipeline 3c4914186e9741b352e5e1a081c4b8c2 https://www.encodeproject.org/files/ENCFF918LPX/@@download/ENCFF918LPX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF736WSI bed narrowPeak peaks ENCSR764CZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF217-human DNA False 2017-06-07 ENCODE 1 ENCFF593EWE, ENCFF901CND 6893404 ENCODE Processing Pipeline 252b55c4550ec6b08124dd53f6f0a2e4 https://www.encodeproject.org/files/ENCFF736WSI/@@download/ENCFF736WSI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF771MQQ bed narrowPeak peaks ENCSR681WHQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETS1-human DNA False 2018-01-26 ENCODE 1 ENCFF172WFR, ENCFF863VMN 5083194 ENCODE Processing Pipeline 4b99e565fa0694f3cf163d2d13b50b86 https://www.encodeproject.org/files/ENCFF771MQQ/@@download/ENCFF771MQQ.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF726PBL bed narrowPeak peaks ENCSR485OYR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB25-human DNA False 2018-02-12 ENCODE 1 ENCFF199DBR 6703817 ENCODE Processing Pipeline 41242e85b3d30743d779506d8c7c4e6c https://www.encodeproject.org/files/ENCFF726PBL/@@download/ENCFF726PBL.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF824NFX bed narrowPeak peaks ENCSR701AQS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-10-31 ENCODE 1 ENCFF517CCI, ENCFF583FAG 6211167 ENCODE Processing Pipeline 6e287b966c2ea7a889f418d0e1e64d97 https://www.encodeproject.org/files/ENCFF824NFX/@@download/ENCFF824NFX.bed.gz hg19 released antibody characterized with exemption ENCFF145MQM bed narrowPeak peaks ENCSR528PSI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HLF-human DNA False 2016-10-12 ENCODE 1 ENCFF023YTY, ENCFF468OBD 5902959 ENCODE Processing Pipeline 77bd1b15ac7dd3e9806b3b2dc5284cbb https://www.encodeproject.org/files/ENCFF145MQM/@@download/ENCFF145MQM.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF935DLZ bed narrowPeak peaks ENCSR226QQM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFIA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF369RCJ 6528624 ENCODE Processing Pipeline f542afd8f9ef41d104caa9c6d1c39220 https://www.encodeproject.org/files/ENCFF935DLZ/@@download/ENCFF935DLZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF262AAT bed narrowPeak peaks ENCSR712FAM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZSCAN9-human DNA False 2016-11-08 ENCODE 1 ENCFF079UPJ, ENCFF203ABR 7043889 ENCODE Processing Pipeline 727707af6fce1e3371442eb5d1f9829f https://www.encodeproject.org/files/ENCFF262AAT/@@download/ENCFF262AAT.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF982JLX bed narrowPeak peaks ENCSR553QMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF7-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF970BNS 6582722 ENCODE Processing Pipeline dda7cf3d1254906d95592536b1dd4c76 https://www.encodeproject.org/files/ENCFF982JLX/@@download/ENCFF982JLX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF487JYD bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human DNA False 2016-06-13 ENCODE 1 ENCFF053ULL, ENCFF804GZU 6198220 ENCODE Processing Pipeline 149c202090cd8c1452ad189901f54d15 https://www.encodeproject.org/files/ENCFF487JYD/@@download/ENCFF487JYD.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF074TSF bed narrowPeak peaks ENCSR633OVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFX3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378PCU 6260345 ENCODE Processing Pipeline ebf98b58bf9f340b1d5ef057e7c8ca89 https://www.encodeproject.org/files/ENCFF074TSF/@@download/ENCFF074TSF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF308KAE bed narrowPeak peaks ENCSR071YVR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KMT2B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF887RJC 7037785 ENCODE Processing Pipeline 1391340be3595584a1cc0a711cc1de92 https://www.encodeproject.org/files/ENCFF308KAE/@@download/ENCFF308KAE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF541GTF bed narrowPeak peaks ENCSR822PJT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF309III, ENCFF735LIV 6736752 ENCODE Processing Pipeline 9a5076239e164774b5cc1f186250afab https://www.encodeproject.org/files/ENCFF541GTF/@@download/ENCFF541GTF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF974HXD bed narrowPeak peaks ENCSR993LMB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TGIF2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF288KSL 5946806 ENCODE Processing Pipeline 299055779b6b64cebc8b29c4ef789dd4 https://www.encodeproject.org/files/ENCFF974HXD/@@download/ENCFF974HXD.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF165PIM bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human DNA False 2016-06-13 ENCODE 1 ENCFF773XAD, ENCFF918WMQ 5438648 ENCODE Processing Pipeline 45571ed9fb10e650d229fc35923273d2 https://www.encodeproject.org/files/ENCFF165PIM/@@download/ENCFF165PIM.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF161DQL bed narrowPeak peaks ENCSR423RTK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATA3-human DNA False 2016-10-26 ENCODE 1 ENCFF447KVS, ENCFF763TBX, ENCFF823USR 7269367 ENCODE Processing Pipeline ef22e925cb69dd55cd16da61d179a48e https://www.encodeproject.org/files/ENCFF161DQL/@@download/ENCFF161DQL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF214PFV bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human DNA False 2016-09-01 ENCODE 1 ENCFF072EMM, ENCFF581ZJL 6498662 ENCODE Processing Pipeline 3f11270a3c900c60b30b8dba11743b2a https://www.encodeproject.org/files/ENCFF214PFV/@@download/ENCFF214PFV.bed.gz hg19 released borderline replicate concordance ENCFF572AIP bed narrowPeak peaks ENCSR387JKT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM3A-human DNA False 2018-02-19 ENCODE 1 ENCFF059JFA 5559904 ENCODE Processing Pipeline eb2c365d09e97046411666f07a261821 https://www.encodeproject.org/files/ENCFF572AIP/@@download/ENCFF572AIP.bed.gz hg19 released low read depth, missing genetic modification characterization biological replicates with identical biosample, characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF401PJP bed narrowPeak peaks ENCSR322JEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF106RXX, ENCFF675QNF 6200808 ENCODE Processing Pipeline 98020311042e062215178682bf295447 https://www.encodeproject.org/files/ENCFF401PJP/@@download/ENCFF401PJP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF999NWH bed narrowPeak peaks ENCSR338SEM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF248-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF458MXN 6606107 ENCODE Processing Pipeline 69e6b5849fe673d6d3e23431ea18e289 https://www.encodeproject.org/files/ENCFF999NWH/@@download/ENCFF999NWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF433SFB bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human DNA False 2016-06-13 ENCODE 1 ENCFF117CKT, ENCFF574IJZ 6612953 ENCODE Processing Pipeline e560efe96923141e1f2da95dfb04ab90 https://www.encodeproject.org/files/ENCFF433SFB/@@download/ENCFF433SFB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF822WFQ bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF277QYK, ENCFF477SGV 4658233 ENCODE Processing Pipeline 878975b13bc47e7307609fc440a60b24 https://www.encodeproject.org/files/ENCFF822WFQ/@@download/ENCFF822WFQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF587MUY bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human DNA False 2016-06-13 ENCODE 1 ENCFF479IHH, ENCFF729SVH 6674009 ENCODE Processing Pipeline 3478ef7e080c45e4d353062fb4157e75 https://www.encodeproject.org/files/ENCFF587MUY/@@download/ENCFF587MUY.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF978QAA bed narrowPeak peaks ENCSR909GJR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF484TNT 6955552 ENCODE Processing Pipeline 59c24a48ed7ffaf7d0b794ac374aad33 https://www.encodeproject.org/files/ENCFF978QAA/@@download/ENCFF978QAA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF404HWH bed narrowPeak peaks ENCSR260UJI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-09-28 ENCODE 1 ENCFF023YTY, ENCFF643YHU 5631730 ENCODE Processing Pipeline 14aabb19bc4822c0a595ac1225ac6680 https://www.encodeproject.org/files/ENCFF404HWH/@@download/ENCFF404HWH.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF648CSH bed narrowPeak peaks ENCSR986XYK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF583FAG, ENCFF679HDV 6499228 ENCODE Processing Pipeline 791ecf1ff8b011731451176d67abdd5c https://www.encodeproject.org/files/ENCFF648CSH/@@download/ENCFF648CSH.bed.gz hg19 released ENCFF341MQJ bed narrowPeak peaks ENCSR976TBC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF5-human DNA False 2017-02-21 ENCODE 1 ENCFF055QIN, ENCFF941TZZ 5851393 ENCODE Processing Pipeline 7c02d5350df7edb02091e78732cfeb5e https://www.encodeproject.org/files/ENCFF341MQJ/@@download/ENCFF341MQJ.bed.gz hg19 released borderline replicate concordance ENCFF958LLL bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human DNA False 2016-10-31 ENCODE 1 ENCFF469DEJ, ENCFF581ZJL 6673322 ENCODE Processing Pipeline 975a07ecd07b60af1afa02f8d730bce8 https://www.encodeproject.org/files/ENCFF958LLL/@@download/ENCFF958LLL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF231SVC bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF503INV, ENCFF834TUP 7236685 ENCODE Processing Pipeline 627b7ac1338041ecaa9fb192e32943f6 https://www.encodeproject.org/files/ENCFF231SVC/@@download/ENCFF231SVC.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, antibody characterized with exemption ENCFF706SMS bed narrowPeak peaks ENCSR793HVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF472GHA, ENCFF941TZZ 6048487 ENCODE Processing Pipeline 120337e4ca0cb8e4c946c6dfb3c7aaf1 https://www.encodeproject.org/files/ENCFF706SMS/@@download/ENCFF706SMS.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF967KQK bed narrowPeak peaks ENCSR765MKZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DRAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF384GVG 6740546 ENCODE Processing Pipeline d6a36188d902c401e9801ce8bcd19d9f https://www.encodeproject.org/files/ENCFF967KQK/@@download/ENCFF967KQK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF237JZC bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human DNA False 2016-02-16 ENCODE 1 ENCFF676IGA, ENCFF985LZI 6000653 ENCODE Processing Pipeline f7838b40ca9c0c92219e84adafab3aea https://www.encodeproject.org/files/ENCFF237JZC/@@download/ENCFF237JZC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF888AZU bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2016-10-31 ENCODE 1 ENCFF406KFP, ENCFF581ZJL 6893480 ENCODE Processing Pipeline aa22323020872da6f25c0326969b9c18 https://www.encodeproject.org/files/ENCFF888AZU/@@download/ENCFF888AZU.bed.gz hg19 released mild to moderate bottlenecking ENCFF342POD bed narrowPeak peaks ENCSR864KNH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens YBX1-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF740KJR, ENCFF823USR 7065075 ENCODE Processing Pipeline 057bb4558006aa013316912296270fc1 https://www.encodeproject.org/files/ENCFF342POD/@@download/ENCFF342POD.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF782XJB bed narrowPeak peaks ENCSR925QAW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HMG20B-human DNA False 2016-11-08 ENCODE 1 ENCFF113NRO, ENCFF203ABR 6566527 ENCODE Processing Pipeline a142d19851b7d191bf6d6cc4005174e4 https://www.encodeproject.org/files/ENCFF782XJB/@@download/ENCFF782XJB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF072FFV bed narrowPeak peaks ENCSR462KYU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPB1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF266WEU 6563094 ENCODE Processing Pipeline a7be5bebea49db48046ddbd54fcef2e2 https://www.encodeproject.org/files/ENCFF072FFV/@@download/ENCFF072FFV.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity characterization(s) pending review missing control alignments ENCFF940DWZ bed narrowPeak peaks ENCSR560SEP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RXRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239UPK 6413631 ENCODE Processing Pipeline 5f1784ff3f713b9e9b6c7e8d362d47e5 https://www.encodeproject.org/files/ENCFF940DWZ/@@download/ENCFF940DWZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF398VGB bed narrowPeak peaks ENCSR744YJR ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF446KCO, ENCFF667NBG 6453063 ENCODE Processing Pipeline a7c0fedf24ba4507e174641879f1a881 https://www.encodeproject.org/files/ENCFF398VGB/@@download/ENCFF398VGB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF517DCO bed narrowPeak peaks ENCSR096KWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF207-human DNA False 2016-09-01 ENCODE 1 ENCFF100EAO, ENCFF583FAG 6182723 ENCODE Processing Pipeline 9c925ac476a6a170bdb6a98588c00da0 https://www.encodeproject.org/files/ENCFF517DCO/@@download/ENCFF517DCO.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF191KLS bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF648AFL 6220137 ENCODE Processing Pipeline 83bc0b2fc5f626e6c45d14ff150c1ac7 https://www.encodeproject.org/files/ENCFF191KLS/@@download/ENCFF191KLS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF663WHF bed narrowPeak peaks ENCSR108TYQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF670MUB 6947945 ENCODE Processing Pipeline 1edc9092c9d332f70fbe3123ddfef3f1 https://www.encodeproject.org/files/ENCFF663WHF/@@download/ENCFF663WHF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF003YYP bed narrowPeak peaks ENCSR938ETG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF9-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF737RIN 6726326 ENCODE Processing Pipeline 73c92a832e55bd708ccb72e4f5557b4e https://www.encodeproject.org/files/ENCFF003YYP/@@download/ENCFF003YYP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF036VGX bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF173YSU, ENCFF477SGV 5188554 ENCODE Processing Pipeline 29ae6be478f6d1e855a650659b303726 https://www.encodeproject.org/files/ENCFF036VGX/@@download/ENCFF036VGX.bed.gz hg19 released low read length, low read depth ENCFF699AFQ bed narrowPeak peaks ENCSR639IIZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPG-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF944MOK 6476005 ENCODE Processing Pipeline 671fdbb6a8889905076c9c1040357172 https://www.encodeproject.org/files/ENCFF699AFQ/@@download/ENCFF699AFQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF131YKB bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF310TZE, ENCFF747SPK 6404445 ENCODE Processing Pipeline ce527a6d51afbb56bee2e1ff7aa357bf https://www.encodeproject.org/files/ENCFF131YKB/@@download/ENCFF131YKB.bed.gz hg19 released antibody characterized with exemption ENCFF128RLF bed narrowPeak peaks ENCSR876UYH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZHX2-human DNA False 2016-11-08 ENCODE 1 ENCFF040OBI, ENCFF455SPG, ENCFF853BBD 6248897 ENCODE Processing Pipeline b7ffc0466ab1748fee9b6cf80271432e https://www.encodeproject.org/files/ENCFF128RLF/@@download/ENCFF128RLF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF463JJS bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF247BJO 5345657 ENCODE Processing Pipeline 3431b39818c317d9293ded2e754c7f64 https://www.encodeproject.org/files/ENCFF463JJS/@@download/ENCFF463JJS.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF131ZOO bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human DNA False 2016-07-28 ENCODE 1 ENCFF045NGS, ENCFF581ZJL 7152432 ENCODE Processing Pipeline 022b59d0cfcc0164573c320d5b12e414 https://www.encodeproject.org/files/ENCFF131ZOO/@@download/ENCFF131ZOO.bed.gz hg19 released low read depth ENCFF036XYH bed narrowPeak peaks ENCSR662EOU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF239NUC 5811044 ENCODE Processing Pipeline 8c0582824968db8c07dc0c0a1ae21c67 https://www.encodeproject.org/files/ENCFF036XYH/@@download/ENCFF036XYH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF915JWV bed narrowPeak peaks ENCSR656MXA ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2017-02-03 ENCODE 1 ENCFF293YFD, ENCFF387KXA, ENCFF762JSN 6992709 ENCODE Processing Pipeline 322e598fffed3dc87b0e289302911269 https://www.encodeproject.org/files/ENCFF915JWV/@@download/ENCFF915JWV.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF931OYK bed narrowPeak peaks ENCSR465XQW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF217-human DNA False 2017-06-23 ENCODE 1 ENCFF447KVS, ENCFF648GJU, ENCFF823USR 7038806 ENCODE Processing Pipeline 2e67d8c4c5a5447b6e7f56507d309e06 https://www.encodeproject.org/files/ENCFF931OYK/@@download/ENCFF931OYK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF854NUO bed narrowPeak peaks ENCSR912ZIY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF780ISS 5933733 ENCODE Processing Pipeline fa1c9f9d1b719d69f4b30900233991e9 https://www.encodeproject.org/files/ENCFF854NUO/@@download/ENCFF854NUO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF875HGQ bed narrowPeak peaks ENCSR645JVW ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF328BAK, ENCFF496DGC 6194400 ENCODE Processing Pipeline 520bbfdcbe200f38899af61c199f8564 https://www.encodeproject.org/files/ENCFF875HGQ/@@download/ENCFF875HGQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF239APD bed narrowPeak peaks ENCSR503VTG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF079WOP, ENCFF447KVS, ENCFF823USR 6566644 ENCODE Processing Pipeline ae33a2639073b893409a18c9490814f0 https://www.encodeproject.org/files/ENCFF239APD/@@download/ENCFF239APD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF433LTF bed narrowPeak peaks ENCSR919UCY ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF798LQE, ENCFF938LSW 5395544 ENCODE Processing Pipeline b834ba2e51cd730a1b84fb4583a96895 https://www.encodeproject.org/files/ENCFF433LTF/@@download/ENCFF433LTF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF855GZK bed narrowPeak peaks ENCSR497JLX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF727JMT 6644733 ENCODE Processing Pipeline a3b80b34086a6f1e8b98442731258cfb https://www.encodeproject.org/files/ENCFF855GZK/@@download/ENCFF855GZK.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF792ZIP bed narrowPeak peaks ENCSR000EAA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens WRNIP1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF172BTO, ENCFF545DZO 4381457 ENCODE Processing Pipeline 1a77a8e34772bfb1b886570b27b199b9 https://www.encodeproject.org/files/ENCFF792ZIP/@@download/ENCFF792ZIP.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF331PEV bed narrowPeak peaks ENCSR455DOO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RCOR2-human DNA False 2016-11-08 ENCODE 1 ENCFF166DDT, ENCFF203ABR 6774249 ENCODE Processing Pipeline 46a1a129b257b17f3e613d71becc23d4 https://www.encodeproject.org/files/ENCFF331PEV/@@download/ENCFF331PEV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF652QAE bed narrowPeak peaks ENCSR604UJV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IRF2-human DNA False 2018-02-10 ENCODE 1 ENCFF291ZML 6497568 ENCODE Processing Pipeline 5ffc86ed3b483d86f98fc708fc447978 https://www.encodeproject.org/files/ENCFF652QAE/@@download/ENCFF652QAE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF994CVU bed narrowPeak peaks ENCSR610EFT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF273NSF, ENCFF639BGL 6399026 ENCODE Processing Pipeline 0277f84646fa4c41222a7e429b22a416 https://www.encodeproject.org/files/ENCFF994CVU/@@download/ENCFF994CVU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF811UJD bed narrowPeak peaks ENCSR000DYS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW 4081503 ENCODE Processing Pipeline 1ae70b98294604a21ef015e2422e3613 https://www.encodeproject.org/files/ENCFF811UJD/@@download/ENCFF811UJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF644HHB bed narrowPeak peaks ENCSR000BJJ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF410PKI, ENCFF601DDB 30829 ENCODE Processing Pipeline 1b27e74260cf0b9b43575bc68ebe9ba8 https://www.encodeproject.org/files/ENCFF644HHB/@@download/ENCFF644HHB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF341FYC bed narrowPeak peaks ENCSR573OJP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF583FAG, ENCFF722BQX 5762708 ENCODE Processing Pipeline 9521a34fc5e029bc807b93e3ce8e5133 https://www.encodeproject.org/files/ENCFF341FYC/@@download/ENCFF341FYC.bed.gz hg19 released ENCFF306UPG bed narrowPeak peaks ENCSR412YGM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZSCAN29-human DNA False 2017-05-17 ENCODE 1 ENCFF901CND, ENCFF914YJM 5433941 ENCODE Processing Pipeline f5b014bec09dab11dd8a15a8a7feade2 https://www.encodeproject.org/files/ENCFF306UPG/@@download/ENCFF306UPG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF393OKG bed narrowPeak peaks ENCSR391ZKN ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF049CMN, ENCFF096CSL 5438993 ENCODE Processing Pipeline fa81190887745a37f19c8594ee9faf54 https://www.encodeproject.org/files/ENCFF393OKG/@@download/ENCFF393OKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF276DMI bed narrowPeak peaks ENCSR033FDW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF724YUP, ENCFF987QGM 6934582 ENCODE Processing Pipeline f84191bdeeaecf50608c8cd038ef23d2 https://www.encodeproject.org/files/ENCFF276DMI/@@download/ENCFF276DMI.bed.gz hg19 released antibody characterized with exemption ENCFF887VZZ bed narrowPeak peaks ENCSR000BGT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BATF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF558RVJ, ENCFF958RTR 4256624 ENCODE Processing Pipeline 233a9430984404d152bb5e70c69c3bc6 https://www.encodeproject.org/files/ENCFF887VZZ/@@download/ENCFF887VZZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF508LBP bed narrowPeak peaks ENCSR460LGH ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF556ZML, ENCFF801WHL, ENCFF923EBC 7137866 ENCODE Processing Pipeline aae0298678f287cb1ba69c6b6b52ea88 https://www.encodeproject.org/files/ENCFF508LBP/@@download/ENCFF508LBP.bed.gz hg19 released mild to moderate bottlenecking ENCFF920BWA bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF792CXJ, ENCFF998GMZ 4768546 ENCODE Processing Pipeline d2ae07c82add76b2ff8ffbc3942cd603 https://www.encodeproject.org/files/ENCFF920BWA/@@download/ENCFF920BWA.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF510WZL bed narrowPeak peaks ENCSR000BGB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032SQZ, ENCFF257YRW 2819827 ENCODE Processing Pipeline a87f8be6a5385104cb344a3d2bd94a7a https://www.encodeproject.org/files/ENCFF510WZL/@@download/ENCFF510WZL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth control extremely low read depth, extremely low read length ENCFF586WMF bed narrowPeak peaks ENCSR559KAB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF239CRJ, ENCFF992PUN 6444911 ENCODE Processing Pipeline a498c601f0df7db09aee8724ad4dece5 https://www.encodeproject.org/files/ENCFF586WMF/@@download/ENCFF586WMF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF410KKV bed narrowPeak peaks ENCSR000EBT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF390NEA, ENCFF599MVB 5099848 ENCODE Processing Pipeline f767cc915a573c8072e6994254633451 https://www.encodeproject.org/files/ENCFF410KKV/@@download/ENCFF410KKV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF567TXV bed narrowPeak peaks ENCSR170DNV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHB2-human DNA False 2018-01-26 ENCODE 1 ENCFF381LRH, ENCFF449NNE 5896995 ENCODE Processing Pipeline f01a62ffbe181b6cfa5e0c361b7e6f5d https://www.encodeproject.org/files/ENCFF567TXV/@@download/ENCFF567TXV.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF551NXL bed narrowPeak peaks ENCSR176BAH ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF457XBH 6818115 ENCODE Processing Pipeline 6bcc55f36d892316fbe4013f95cff52e https://www.encodeproject.org/files/ENCFF551NXL/@@download/ENCFF551NXL.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF174HNI bed narrowPeak peaks ENCSR278SQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NBN-human DNA False 2016-08-24 ENCODE 1 ENCFF282JRK, ENCFF941TZZ 6989177 ENCODE Processing Pipeline e0dc0395c4fcbd87d364ab2b3661eced https://www.encodeproject.org/files/ENCFF174HNI/@@download/ENCFF174HNI.bed.gz hg19 released ENCFF362CPR bed narrowPeak peaks ENCSR270TYZ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF020FAT 7041585 ENCODE Processing Pipeline 07fc3b79cc95f0ed5dbfb696fde20b65 https://www.encodeproject.org/files/ENCFF362CPR/@@download/ENCFF362CPR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF433YXI bed narrowPeak peaks ENCSR828PZH ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF931BEZ 4906299 ENCODE Processing Pipeline 9e824e15037fe6a72787c8d1c8408624 https://www.encodeproject.org/files/ENCFF433YXI/@@download/ENCFF433YXI.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF990NTY bed narrowPeak peaks ENCSR555DCF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF943DGZ 6289486 ENCODE Processing Pipeline 5ba15d436dab08055f7bcc0267b8031e https://www.encodeproject.org/files/ENCFF990NTY/@@download/ENCFF990NTY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF262JCU bed narrowPeak peaks ENCSR751PNN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF112-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF043BND, ENCFF182WHU 6630001 ENCODE Processing Pipeline f05317903e122dfc8f481a0f0a54d3d0 https://www.encodeproject.org/files/ENCFF262JCU/@@download/ENCFF262JCU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF665KNY bed narrowPeak peaks ENCSR859FDL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF687-human DNA False 2017-06-26 ENCODE 1 ENCFF577XDA, ENCFF592WAL, ENCFF901CND 6736864 ENCODE Processing Pipeline 2e36cff01444f7ba282020bc8e7b0328 https://www.encodeproject.org/files/ENCFF665KNY/@@download/ENCFF665KNY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF235SRJ bed narrowPeak peaks ENCSR877SNO ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF735WJM 5342329 ENCODE Processing Pipeline 76da94379a763d4fc8eef2c2b4c6aa4a https://www.encodeproject.org/files/ENCFF235SRJ/@@download/ENCFF235SRJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF415MTB bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-08-24 ENCODE 1 ENCFF424AYM, ENCFF990ZOB 7060962 ENCODE Processing Pipeline 60dfebafea7c06794e27f9c17994ba44 https://www.encodeproject.org/files/ENCFF415MTB/@@download/ENCFF415MTB.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF852XOL bed narrowPeak peaks ENCSR404VWY ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF179GVV, ENCFF475VPO 6800977 ENCODE Processing Pipeline 9a6fe302a1914b332647992ac5bd310f https://www.encodeproject.org/files/ENCFF852XOL/@@download/ENCFF852XOL.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF751MNI bed narrowPeak peaks ENCSR464CSO ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF003VUV, ENCFF036PVG 7063991 ENCODE Processing Pipeline eecdf6db6da53ab478b31050f2298412 https://www.encodeproject.org/files/ENCFF751MNI/@@download/ENCFF751MNI.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF149VRW bed narrowPeak peaks ENCSR928LDG ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF259CUG 6579090 ENCODE Processing Pipeline 3dcc54703f8b206b84df53c4c3c2aae9 https://www.encodeproject.org/files/ENCFF149VRW/@@download/ENCFF149VRW.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF038BWR bed narrowPeak peaks ENCSR313BMV ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF251UXN 5797053 ENCODE Processing Pipeline 81dc193717ccd7b6e24037e8cf3defc4 https://www.encodeproject.org/files/ENCFF038BWR/@@download/ENCFF038BWR.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF970JZW bed narrowPeak peaks ENCSR372JXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF511-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF362WTD 7148166 ENCODE Processing Pipeline 9ce482f96aa7db6959fd7a521c5f66de https://www.encodeproject.org/files/ENCFF970JZW/@@download/ENCFF970JZW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF362KLR bed narrowPeak peaks ENCSR000BRM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF981DLK 6907847 ENCODE Processing Pipeline eb4331f32f8a8c80502f4899bd27ce0a https://www.encodeproject.org/files/ENCFF362KLR/@@download/ENCFF362KLR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF089PWK bed narrowPeak peaks ENCSR665KYH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF521-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF764ABD 6607416 ENCODE Processing Pipeline 257ed1da47c3d165e1c0f62b95885af9 https://www.encodeproject.org/files/ENCFF089PWK/@@download/ENCFF089PWK.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF760LFX bed narrowPeak peaks ENCSR483VJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF662-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF904OQO 6488825 ENCODE Processing Pipeline 9672542df683c206f1531b6923cf910c https://www.encodeproject.org/files/ENCFF760LFX/@@download/ENCFF760LFX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF409MWH bed narrowPeak peaks ENCSR125DAD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MLX-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF646JVE 6453966 ENCODE Processing Pipeline 6f7abd79e442de86cae2d5492382a014 https://www.encodeproject.org/files/ENCFF409MWH/@@download/ENCFF409MWH.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF905MOZ bed narrowPeak peaks ENCSR773QRB ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF937OAI 5633472 ENCODE Processing Pipeline 8edfc1301ca2e4594dc31ab7c8cebcdb https://www.encodeproject.org/files/ENCFF905MOZ/@@download/ENCFF905MOZ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF938QKL bed narrowPeak peaks ENCSR975QNR ChIP-seq UBERON:0000996 vagina tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF604MCE 5547910 ENCODE Processing Pipeline 7da9e1454ba834410306993ded988194 https://www.encodeproject.org/files/ENCFF938QKL/@@download/ENCFF938QKL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF684QPN bed narrowPeak peaks ENCSR849WCQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ASH2L-human DNA False 2017-01-08 ENCODE 1 ENCFF562TOQ, ENCFF602SNK, ENCFF620EZL 5914572 ENCODE Processing Pipeline 6b8a24098c28824fb58252e4986c6a31 https://www.encodeproject.org/files/ENCFF684QPN/@@download/ENCFF684QPN.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF854RKR bed narrowPeak peaks ENCSR906OMM ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF696DSP 5254882 ENCODE Processing Pipeline f2a2ee8ab8cd634f5a8da5952b6944e3 https://www.encodeproject.org/files/ENCFF854RKR/@@download/ENCFF854RKR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF366JFG bed narrowPeak peaks ENCSR924TVL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX5-human DNA False 2014-07-07 ENCODE 1 ENCFF253MVW, ENCFF583FAG 6211597 ENCODE Processing Pipeline 71fdc5bff6a4fe9f846ed56491c27998 https://www.encodeproject.org/files/ENCFF366JFG/@@download/ENCFF366JFG.bed.gz hg19 released antibody characterized with exemption ENCFF480BUU bed narrowPeak peaks ENCSR659LJJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens HDAC2-human DNA False 2016-11-23 ENCODE 1 ENCFF484DFP, ENCFF801GGG, ENCFF881DVS 6385654 ENCODE Processing Pipeline 97c78f4b0f71735d633e92d7e9bec405 https://www.encodeproject.org/files/ENCFF480BUU/@@download/ENCFF480BUU.bed.gz hg19 released missing control alignments ENCFF923UEP bed narrowPeak peaks ENCSR950CUQ ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF831XEP, ENCFF925ORI 6294207 ENCODE Processing Pipeline ea1d9627c056b571326eac2aabd517f0 https://www.encodeproject.org/files/ENCFF923UEP/@@download/ENCFF923UEP.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF080VTW bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2017-09-28 ENCODE 1 ENCFF428MEC, ENCFF581ZJL 7037676 ENCODE Processing Pipeline 505f5c7a83b186acdf5416a5758462b7 https://www.encodeproject.org/files/ENCFF080VTW/@@download/ENCFF080VTW.bed.gz hg19 released ENCFF003KQY bed narrowPeak peaks ENCSR229DYF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB26-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF182WHU, ENCFF502RYW 7233440 ENCODE Processing Pipeline 8d7e4a7a5043308e72ad9843ca3aba22 https://www.encodeproject.org/files/ENCFF003KQY/@@download/ENCFF003KQY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF610BOW bed narrowPeak peaks ENCSR465VLK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF574FWU, ENCFF583FAG 5680847 ENCODE Processing Pipeline be639b0e150d2dbf42e3daa91726ddab https://www.encodeproject.org/files/ENCFF610BOW/@@download/ENCFF610BOW.bed.gz hg19 released borderline replicate concordance ENCFF255AOS bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF529GUX, ENCFF951VMN 5745510 ENCODE Processing Pipeline 5eefc812b28c3b59766e5f51524c526e https://www.encodeproject.org/files/ENCFF255AOS/@@download/ENCFF255AOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF894JDZ bed narrowPeak peaks ENCSR334KIQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA False 2016-10-31 ENCODE 1 ENCFF449NNE, ENCFF865UXV 6083895 ENCODE Processing Pipeline 6f28a07567a7c87aac0144826f7c10d2 https://www.encodeproject.org/files/ENCFF894JDZ/@@download/ENCFF894JDZ.bed.gz hg19 released ENCFF498MXX bed narrowPeak peaks ENCSR861XGM ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF768NBN, ENCFF913EKV 6826330 ENCODE Processing Pipeline ef6b7bf3c7b703372dc65dd4382ecb3d https://www.encodeproject.org/files/ENCFF498MXX/@@download/ENCFF498MXX.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF724MMC bed narrowPeak peaks ENCSR560BUE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF565WPL, ENCFF587UZE 6157902 ENCODE Processing Pipeline c0564501c9dc56734c9d47b1729a7350 https://www.encodeproject.org/files/ENCFF724MMC/@@download/ENCFF724MMC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF795HRT bed narrowPeak peaks ENCSR435OQD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF008PUA, ENCFF068ULX, ENCFF278ROO 7317253 ENCODE Processing Pipeline 05f9cdcc9027a766d96bb56fe6079796 https://www.encodeproject.org/files/ENCFF795HRT/@@download/ENCFF795HRT.bed.gz hg19 released borderline replicate concordance NTR biosample ENCFF499JUB bed narrowPeak peaks ENCSR550SCU ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF449GDV, ENCFF801GGG, ENCFF881DVS 6522303 ENCODE Processing Pipeline 46d6b8fbba19841b6a3d590157fc8f6b https://www.encodeproject.org/files/ENCFF499JUB/@@download/ENCFF499JUB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF633UOS bed narrowPeak peaks ENCSR081WLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD51-human DNA False 2016-09-01 ENCODE 1 ENCFF419MUD, ENCFF449NNE 6103939 ENCODE Processing Pipeline 6a7cabd59ae7db8ffb1490e16d9248ea https://www.encodeproject.org/files/ENCFF633UOS/@@download/ENCFF633UOS.bed.gz hg19 released borderline replicate concordance ENCFF326GRX bed narrowPeak peaks ENCSR505NMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-E2F4-human DNA False 2016-06-13 ENCODE 1 ENCFF087PBL, ENCFF676IWT 5304151 ENCODE Processing Pipeline 3b269d301b73987c640ea660037912bf https://www.encodeproject.org/files/ENCFF326GRX/@@download/ENCFF326GRX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF306ZWZ bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF391WXJ, ENCFF581ZJL 6898277 ENCODE Processing Pipeline a7291abb982198f7a84b1f6a90cf8769 https://www.encodeproject.org/files/ENCFF306ZWZ/@@download/ENCFF306ZWZ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF198RAS bed narrowPeak peaks ENCSR011CIR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF614-human DNA False 2018-02-10 ENCODE 1 ENCFF608HPC 6791954 ENCODE Processing Pipeline dbd4b6a1ee3e0043a3243bfcc4e0492e https://www.encodeproject.org/files/ENCFF198RAS/@@download/ENCFF198RAS.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF378WXQ bed narrowPeak peaks ENCSR894SXR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF520NCD, ENCFF843IXX 6797746 ENCODE Processing Pipeline 4901a8680828e0189b635ddb7439f3f3 https://www.encodeproject.org/files/ENCFF378WXQ/@@download/ENCFF378WXQ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF096XNX bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human DNA False 2017-02-13 ENCODE 1 ENCFF129IXY, ENCFF821SUV 7115701 ENCODE Processing Pipeline 0e76f84baefde2f4cff875157755018e https://www.encodeproject.org/files/ENCFF096XNX/@@download/ENCFF096XNX.bed.gz hg19 released missing genetic modification characterization ENCFF292NEY bed narrowPeak peaks ENCSR670YPQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DMAP1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF459SLH 6756387 ENCODE Processing Pipeline 623da1cbb5b55ef34e2f87f21ae1bb31 https://www.encodeproject.org/files/ENCFF292NEY/@@download/ENCFF292NEY.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF521WEX bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human DNA False 2016-06-13 ENCODE 1 ENCFF064YUE, ENCFF268SHC 5731296 ENCODE Processing Pipeline 47f9f3c9fef8c244efac26f3a0b12900 https://www.encodeproject.org/files/ENCFF521WEX/@@download/ENCFF521WEX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF987VRF bed narrowPeak peaks ENCSR003SZZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF240WVD, ENCFF877MCP 6556307 ENCODE Processing Pipeline 675cf18322652dc745d98cbba4ba01cc https://www.encodeproject.org/files/ENCFF987VRF/@@download/ENCFF987VRF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF728JUW bed narrowPeak peaks ENCSR225OKX ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF541AWB, ENCFF856ESK 5692158 ENCODE Processing Pipeline 2be009be9c312bb21aba7458718b3fca https://www.encodeproject.org/files/ENCFF728JUW/@@download/ENCFF728JUW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF061VCB bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human DNA False 2016-06-13 ENCODE 1 ENCFF947CVN, ENCFF977MTW 6359309 ENCODE Processing Pipeline 3ec09c55ea1f7b4322b25ffae57fbbd1 https://www.encodeproject.org/files/ENCFF061VCB/@@download/ENCFF061VCB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF927GGF bed narrowPeak peaks ENCSR450FRI ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF007JEJ, ENCFF764UTK 6766708 ENCODE Processing Pipeline ae781c3f65e4bf41cd2ee0cd17f786da https://www.encodeproject.org/files/ENCFF927GGF/@@download/ENCFF927GGF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF882WGE bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF413LCN, ENCFF466LEC, ENCFF984PYA 5668214 ENCODE Processing Pipeline bb6cceac098c9c18a285ddaac2ab0c6c https://www.encodeproject.org/files/ENCFF882WGE/@@download/ENCFF882WGE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF698DYH bed narrowPeak peaks ENCSR014GSQ ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF027GOA, ENCFF312ULR 6053666 ENCODE Processing Pipeline b4dae9b1fe658119f852ada3a60b4b10 https://www.encodeproject.org/files/ENCFF698DYH/@@download/ENCFF698DYH.bed.gz hg19 released antibody characterized with exemption ENCFF640ZKF bed narrowPeak peaks ENCSR666QNP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TEAD3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF378LSL 6979957 ENCODE Processing Pipeline c2c01123b6dabcc3e4d151306ba84a09 https://www.encodeproject.org/files/ENCFF640ZKF/@@download/ENCFF640ZKF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF755JDJ bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF382EGR, ENCFF581ZJL 6642143 ENCODE Processing Pipeline cac3983772b5e92e19a70e7c9c65c348 https://www.encodeproject.org/files/ENCFF755JDJ/@@download/ENCFF755JDJ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF930UBG bed narrowPeak peaks ENCSR979FQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2017-09-29 ENCODE 1 ENCFF402RYM, ENCFF583FAG 6001261 ENCODE Processing Pipeline bd2667b9b5997fa88abd3c21695a8128 https://www.encodeproject.org/files/ENCFF930UBG/@@download/ENCFF930UBG.bed.gz hg19 released ENCFF543JOD bed narrowPeak peaks ENCSR835XKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2016-07-28 ENCODE 1 ENCFF192BTS, ENCFF941TZZ 6550363 ENCODE Processing Pipeline 2e1060a6c0a284bd9c73fd3c8370dd29 https://www.encodeproject.org/files/ENCFF543JOD/@@download/ENCFF543JOD.bed.gz hg19 released low read depth ENCFF700KCM bed narrowPeak peaks ENCSR934JDG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF294LCP, ENCFF447KVS, ENCFF823USR 6929481 ENCODE Processing Pipeline f925e1ec5e1d90497301cf889852287c https://www.encodeproject.org/files/ENCFF700KCM/@@download/ENCFF700KCM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF845TET bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF009ZXV, ENCFF629YBN 6765258 ENCODE Processing Pipeline e7f259ed3066ecddb659b324d47541a4 https://www.encodeproject.org/files/ENCFF845TET/@@download/ENCFF845TET.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF351RVX bed narrowPeak peaks ENCSR268QIQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF3-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF210NKW, ENCFF851QFR 3634415 ENCODE Processing Pipeline 955f84775d6840b7dd27b39a1daa2067 https://www.encodeproject.org/files/ENCFF351RVX/@@download/ENCFF351RVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF079BZJ bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-11-22 ENCODE 1 ENCFF160VXC, ENCFF769UEW 6419314 ENCODE Processing Pipeline d380eda55ddb0be8f68ad0ee2bddd97f https://www.encodeproject.org/files/ENCFF079BZJ/@@download/ENCFF079BZJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF389SGB bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF774JUR 5026501 ENCODE Processing Pipeline fe1b3532c7c21cf270937a99c2fc04b9 https://www.encodeproject.org/files/ENCFF389SGB/@@download/ENCFF389SGB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF435AEO bed narrowPeak peaks ENCSR534VHI ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens ETS1-human DNA False 2016-06-13 ENCODE 1 ENCFF017YFK, ENCFF741SOH 5249954 ENCODE Processing Pipeline e190fb27271ab2eb4a9202de6945a305 https://www.encodeproject.org/files/ENCFF435AEO/@@download/ENCFF435AEO.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF527OVH bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF767WRS 7016503 ENCODE Processing Pipeline 4d1f0ebce3bbc49cd26c4b43daf8ae07 https://www.encodeproject.org/files/ENCFF527OVH/@@download/ENCFF527OVH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF473OII bed narrowPeak peaks ENCSR437GBJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF375JDH, ENCFF901CND 6546459 ENCODE Processing Pipeline 9ed939dcb5162b559ebec59f2374d1f5 https://www.encodeproject.org/files/ENCFF473OII/@@download/ENCFF473OII.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF138BYH bed narrowPeak peaks ENCSR000DZA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF289UDS, ENCFF545DZO 4568115 ENCODE Processing Pipeline ec1198a4c0a1cd0819201529ef26e465 https://www.encodeproject.org/files/ENCFF138BYH/@@download/ENCFF138BYH.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF779XER bed narrowPeak peaks ENCSR000DZR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF450UXL, ENCFF545DZO 4742342 ENCODE Processing Pipeline 8889ed38c32f4cb12f7fe11118d5c60f https://www.encodeproject.org/files/ENCFF779XER/@@download/ENCFF779XER.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF839MCU bed narrowPeak peaks ENCSR601OGE ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF321UJV, ENCFF689YYU 5980828 ENCODE Processing Pipeline c861ae9a61a819a72c11b296796dff7a https://www.encodeproject.org/files/ENCFF839MCU/@@download/ENCFF839MCU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF331TXU bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-10-31 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF 7232667 ENCODE Processing Pipeline b34b2ecd91e077a9bf871828610a093d https://www.encodeproject.org/files/ENCFF331TXU/@@download/ENCFF331TXU.bed.gz hg19 released mild to moderate bottlenecking ENCFF373EUK bed narrowPeak peaks ENCSR837GTK ChIP-seq UBERON:0002107 liver tissue Homo sapiens JUND-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV 6321057 ENCODE Processing Pipeline b2742acb42d3e4e5a9501075875e1a85 https://www.encodeproject.org/files/ENCFF373EUK/@@download/ENCFF373EUK.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF670QJS bed narrowPeak peaks ENCSR000ARI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF165PBN, ENCFF293TTT, ENCFF705NOL 6810374 ENCODE Processing Pipeline 3ff7564521f4c2c8a8f5c391c9c91e28 https://www.encodeproject.org/files/ENCFF670QJS/@@download/ENCFF670QJS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF355KNJ bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human DNA False 2016-01-14 ENCODE 1 ENCFF024MPE, ENCFF304EUO 6157206 ENCODE Processing Pipeline dd2a0ea9d56a21d71096278aa6ef3506 https://www.encodeproject.org/files/ENCFF355KNJ/@@download/ENCFF355KNJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing mapped reads lengths ENCFF310LKB bed narrowPeak peaks ENCSR482TWQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD51-human DNA False 2016-11-17 ENCODE 1 ENCFF170QJT, ENCFF901CND 6375649 ENCODE Processing Pipeline 830475561fdc0192989ad9f5baac0738 https://www.encodeproject.org/files/ENCFF310LKB/@@download/ENCFF310LKB.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF028OCG bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF834GPI, ENCFF998GMZ 3212789 ENCODE Processing Pipeline ed9641efadb73b9a2d36f0187bb15fd8 https://www.encodeproject.org/files/ENCFF028OCG/@@download/ENCFF028OCG.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF235AXH bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF146HTM, ENCFF585PFH 3326792 ENCODE Processing Pipeline 1607a273700f6eefef836f47e175b8d9 https://www.encodeproject.org/files/ENCFF235AXH/@@download/ENCFF235AXH.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF194TDU bed narrowPeak peaks ENCSR000EIA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens MXI1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP 6203326 ENCODE Processing Pipeline 33a874820969f709e61964b9aacd2a0f https://www.encodeproject.org/files/ENCFF194TDU/@@download/ENCFF194TDU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF906ESV bed narrowPeak peaks ENCSR000BLW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF373JKP 4787613 ENCODE Processing Pipeline 9eeaf89d2ba54956f5b1a59068dc294b https://www.encodeproject.org/files/ENCFF906ESV/@@download/ENCFF906ESV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF372YKO bed narrowPeak peaks ENCSR000EXP ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092AFJ, ENCFF781IPH 5914331 ENCODE Processing Pipeline ebfc24572266527a081b131a5fed82fd https://www.encodeproject.org/files/ENCFF372YKO/@@download/ENCFF372YKO.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF647EHE bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human DNA False 2017-07-28 ENCODE 1 ENCFF160VXC, ENCFF557UXG 6810731 ENCODE Processing Pipeline eb698dad8929ad37dadb14376b02a824 https://www.encodeproject.org/files/ENCFF647EHE/@@download/ENCFF647EHE.bed.gz hg19 released mild to moderate bottlenecking ENCFF363JNV bed narrowPeak peaks ENCSR893QWP ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF894WFR 5567841 ENCODE Processing Pipeline ed353034eef1a680977248a5723c6883 https://www.encodeproject.org/files/ENCFF363JNV/@@download/ENCFF363JNV.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF001UTW bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1126676 Vishwanath Iyer, UTA 622afeb1b860c907cac627b9d9c150be https://www.encodeproject.org/files/ENCFF001UTW/@@download/ENCFF001UTW.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from missing control alignments ENCFF525QBA bed narrowPeak peaks ENCSR000DMY ChIP-seq EFO:0002939 medulloblastoma cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF023GMN, ENCFF446HAE 3655099 ENCODE Processing Pipeline 2cca84b4e022702c1ccf58715598d44f https://www.encodeproject.org/files/ENCFF525QBA/@@download/ENCFF525QBA.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF099GES bed narrowPeak peaks ENCSR047DRF ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF435EWI 4235605 ENCODE Processing Pipeline c82f6830ae4ec56fbbcc45e5cc3d739b https://www.encodeproject.org/files/ENCFF099GES/@@download/ENCFF099GES.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF311HXH bed narrowPeak peaks ENCSR000BLT ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134LQW, ENCFF632AHN 5189469 ENCODE Processing Pipeline 32ce4896d147292c080d225b3097ded9 https://www.encodeproject.org/files/ENCFF311HXH/@@download/ENCFF311HXH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF075WCP bed narrowPeak peaks ENCSR983SZL ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF031YAG 5215129 ENCODE Processing Pipeline f6e0179eb4400c12766a4769cd8475fe https://www.encodeproject.org/files/ENCFF075WCP/@@download/ENCFF075WCP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF261OOY bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF880NAD 6789096 ENCODE Processing Pipeline e743490d7df20591f455f87097e4306e https://www.encodeproject.org/files/ENCFF261OOY/@@download/ENCFF261OOY.bed.gz hg19 released low read depth ENCFF899XEM bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF193QAR 1723059 ENCODE Processing Pipeline 682a1f74ecb0c3f653a3f0f457a3fdb1 https://www.encodeproject.org/files/ENCFF899XEM/@@download/ENCFF899XEM.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF306BVA bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 6500985 ENCODE Processing Pipeline bd57724400e546636bf4a80368f9bf47 https://www.encodeproject.org/files/ENCFF306BVA/@@download/ENCFF306BVA.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF515NYK bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF654EHF, ENCFF807CUF, ENCFF988XFX 6444026 ENCODE Processing Pipeline fedb647c9ac83e7032358eaee3cc448c https://www.encodeproject.org/files/ENCFF515NYK/@@download/ENCFF515NYK.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF128ZQH bed narrowPeak peaks ENCSR205FOW ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF476XCQ, ENCFF654EHF, ENCFF807CUF 6644952 ENCODE Processing Pipeline a1b971d02033ccb6ad2b14cd75b14bf0 https://www.encodeproject.org/files/ENCFF128ZQH/@@download/ENCFF128ZQH.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF506WYU bed narrowPeak peaks ENCSR274SLQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CHD2-human DNA False 2018-01-26 ENCODE 1 ENCFF650GFB, ENCFF741WGR 5386237 ENCODE Processing Pipeline b9bc268f3a47505c77106f9bc18f3be4 https://www.encodeproject.org/files/ENCFF506WYU/@@download/ENCFF506WYU.bed.gz hg19 released file validation error, low read length mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF699AFV bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF115IJR, ENCFF581ZJL 6920391 ENCODE Processing Pipeline 3734147554a35fa56a7b48010c1acc1c https://www.encodeproject.org/files/ENCFF699AFV/@@download/ENCFF699AFV.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF059LBQ bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF521MJN, ENCFF834TUP 7254816 ENCODE Processing Pipeline 308d63dee50ea770d3a9870c122a6492 https://www.encodeproject.org/files/ENCFF059LBQ/@@download/ENCFF059LBQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF651MBI bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF849EIR, ENCFF991UTU 5909377 ENCODE Processing Pipeline 4b5a5979d48d2b31a60bfbc5e31b029f https://www.encodeproject.org/files/ENCFF651MBI/@@download/ENCFF651MBI.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF765FDF bed narrowPeak peaks ENCSR297GII ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4G-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF884TWU, ENCFF991UTU 6065050 ENCODE Processing Pipeline cea37fc6afa26cbcab480905cdd8deec https://www.encodeproject.org/files/ENCFF765FDF/@@download/ENCFF765FDF.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF971SJB bed narrowPeak peaks ENCSR324RCI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF811PZE, ENCFF991UTU 5575230 ENCODE Processing Pipeline dfe5f474cdaa145a30751de61781cda3 https://www.encodeproject.org/files/ENCFF971SJB/@@download/ENCFF971SJB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF682TFX bed narrowPeak peaks ENCSR619IUE ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-10-27 ENCODE 1 ENCFF121VXJ, ENCFF829HKP 4536822 ENCODE Processing Pipeline 898addb82a3a00236f8dd5143bea2588 https://www.encodeproject.org/files/ENCFF682TFX/@@download/ENCFF682TFX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample, NTR biosample ENCFF939WYL bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human DNA False 2016-09-12 ENCODE 1 ENCFF354IGM, ENCFF444TNY, ENCFF847YDJ 6086390 ENCODE Processing Pipeline d487c96986116ccb87b786d9ddfd69c7 https://www.encodeproject.org/files/ENCFF939WYL/@@download/ENCFF939WYL.bed.gz hg19 released antibody characterized with exemption ENCFF697XWY bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF970LPR 7113255 ENCODE Processing Pipeline e189fec681cec63f4395946a62ac2d35 https://www.encodeproject.org/files/ENCFF697XWY/@@download/ENCFF697XWY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF047ZBU bed narrowPeak peaks ENCSR212YKD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SKIL-human DNA False 2017-07-24 ENCODE 1 ENCFF287SKW, ENCFF708NLM 6753854 ENCODE Processing Pipeline d27b072c741a350d638f0f1bba53c8a4 https://www.encodeproject.org/files/ENCFF047ZBU/@@download/ENCFF047ZBU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF277OHH bed narrowPeak peaks ENCSR138RCE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF132-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF089HFZ 6040187 ENCODE Processing Pipeline ed80b1ea2043885e77065f52f9de9eca https://www.encodeproject.org/files/ENCFF277OHH/@@download/ENCFF277OHH.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF084INO bed narrowPeak peaks ENCSR386YIH ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF571ICH, ENCFF807CUF, ENCFF991UTU 6726328 ENCODE Processing Pipeline c86c615448e702fdfffcb965bbf255d8 https://www.encodeproject.org/files/ENCFF084INO/@@download/ENCFF084INO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF139MVJ bed narrowPeak peaks ENCSR000BIK ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF624MYA, ENCFF864ASU 6133756 ENCODE Processing Pipeline 295a0db3bef0fe42af9d76d2a481304c https://www.encodeproject.org/files/ENCFF139MVJ/@@download/ENCFF139MVJ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF321VDV bed narrowPeak peaks ENCSR729GXE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF029GAR, ENCFF977RET 5720154 ENCODE Processing Pipeline d3957fa60bb67b5c06ddf25c0b272aa2 https://www.encodeproject.org/files/ENCFF321VDV/@@download/ENCFF321VDV.bed.gz hg19 released antibody characterized with exemption ENCFF305OFV bed narrowPeak peaks ENCSR891WPD ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF502VMV 5707914 ENCODE Processing Pipeline 3977eb99d78fe78ea670cee7e4a9bd35 https://www.encodeproject.org/files/ENCFF305OFV/@@download/ENCFF305OFV.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF774VDD bed narrowPeak peaks ENCSR274LVQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF776-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF664QKK 7180544 ENCODE Processing Pipeline b64eb46b2a288c6a4004a54de41eacc1 https://www.encodeproject.org/files/ENCFF774VDD/@@download/ENCFF774VDD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF289KHP bed narrowPeak peaks ENCSR000BVO ChIP-seq EFO:0001247 T47D cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF356EIA, ENCFF370NFJ 5301930 ENCODE Processing Pipeline 54692f54484dbc45dd5b24f97827cf46 https://www.encodeproject.org/files/ENCFF289KHP/@@download/ENCFF289KHP.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF901DDA bed narrowPeak peaks ENCSR445QRF ChIP-seq UBERON:0002107 liver tissue Homo sapiens HNF4A-human DNA False 2016-06-30 ENCODE 1 ENCFF518GRP, ENCFF991UTU 6321436 ENCODE Processing Pipeline 226a375cdfc7012ccf666775f92149d7 https://www.encodeproject.org/files/ENCFF901DDA/@@download/ENCFF901DDA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF943JKE bed narrowPeak peaks ENCSR000BPC ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF441SQQ 6134340 ENCODE Processing Pipeline 17e242d7d8d74798c7378895af2c4e9b https://www.encodeproject.org/files/ENCFF943JKE/@@download/ENCFF943JKE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF987RLN bed narrowPeak peaks ENCSR158TRP ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF782VOH 5702107 ENCODE Processing Pipeline 1d3bf3a05b1216602a3795be6f6f0e85 https://www.encodeproject.org/files/ENCFF987RLN/@@download/ENCFF987RLN.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF145YNF bed narrowPeak peaks ENCSR290ZOS ChIP-seq UBERON:0002107 liver tissue Homo sapiens EGR1-human DNA False 2018-02-08 ENCODE 1 ENCFF682QIZ, ENCFF991UTU 4609083 ENCODE Processing Pipeline bbb806fcf28ecd705613053b179cb4a9 https://www.encodeproject.org/files/ENCFF145YNF/@@download/ENCFF145YNF.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF111FTU bed narrowPeak peaks ENCSR442ZTI ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF771VGT, ENCFF962NQY 6832982 ENCODE Processing Pipeline 460550f5956928e515dcffe7d9a9ec34 https://www.encodeproject.org/files/ENCFF111FTU/@@download/ENCFF111FTU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF074LXY bed narrowPeak peaks ENCSR633OEO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF403XAG, ENCFF629CIH 6926235 ENCODE Processing Pipeline a1c88cf606d45f6889b2dbea34c55ca8 https://www.encodeproject.org/files/ENCFF074LXY/@@download/ENCFF074LXY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF545UIM bed narrowPeak peaks ENCSR800QIT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF1A-human DNA False 2016-09-09 ENCODE 1 ENCFF679MUX, ENCFF969DYI, ENCFF994YBV 6010076 ENCODE Processing Pipeline 50ab1e0210599afa6942f301dbeafc67 https://www.encodeproject.org/files/ENCFF545UIM/@@download/ENCFF545UIM.bed.gz hg19 released low read depth ENCFF231ONX bed narrowPeak peaks ENCSR469WAO ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX2-human DNA False 2016-11-23 ENCODE 1 ENCFF573RUL, ENCFF801GGG, ENCFF881DVS 5378132 ENCODE Processing Pipeline dd14072d52e4d4bfa945c74759f9704a https://www.encodeproject.org/files/ENCFF231ONX/@@download/ENCFF231ONX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF151FBW bed narrowPeak peaks ENCSR847DIT ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF654EHF, ENCFF668CFX, ENCFF991UTU 6402451 ENCODE Processing Pipeline 84f3ade497df8a9e049d1fd7c1295c5b https://www.encodeproject.org/files/ENCFF151FBW/@@download/ENCFF151FBW.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF634EKL bed narrowPeak peaks ENCSR038GMB ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-06-30 ENCODE 1 ENCFF200LFK, ENCFF274NHB, ENCFF321UJV 6358957 ENCODE Processing Pipeline 73c23b4202dccbc449bc25713a56cbd7 https://www.encodeproject.org/files/ENCFF634EKL/@@download/ENCFF634EKL.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF347OPC bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF662JKA 6464701 ENCODE Processing Pipeline f86de4c42db0714237a30fc9780fad85 https://www.encodeproject.org/files/ENCFF347OPC/@@download/ENCFF347OPC.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF582WLM bed narrowPeak peaks ENCSR516HUP ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-19 ENCODE 1 ENCFF097YMB, ENCFF321UJV 6367390 ENCODE Processing Pipeline 5a169b97b1266e69d4c5b7b56e48567a https://www.encodeproject.org/files/ENCFF582WLM/@@download/ENCFF582WLM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF125PLO bed narrowPeak peaks ENCSR310NYI ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF276ETD, ENCFF321UJV 6079049 ENCODE Processing Pipeline 0c1c0a603aa87fcd889217b1fc1ee62b https://www.encodeproject.org/files/ENCFF125PLO/@@download/ENCFF125PLO.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF746ZUT bed narrowPeak peaks ENCSR544APK ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF320PZV, ENCFF738KRH 6470437 ENCODE Processing Pipeline d82e0e54ca11388d7a1a4ddae8143302 https://www.encodeproject.org/files/ENCFF746ZUT/@@download/ENCFF746ZUT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF642AZQ bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human DNA False 2016-08-24 ENCODE 1 ENCFF469YUW, ENCFF800BIH 6908161 ENCODE Processing Pipeline df619303cb7cd7dd5aa205ccf8675504 https://www.encodeproject.org/files/ENCFF642AZQ/@@download/ENCFF642AZQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization, moderate library complexity ENCFF763SSU bed narrowPeak peaks ENCSR746XEG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFXL1-human DNA False 2017-05-17 ENCODE 1 ENCFF285GPK, ENCFF901CND 6126835 ENCODE Processing Pipeline dfc477ce4fcf5905d865702a5f6909f6 https://www.encodeproject.org/files/ENCFF763SSU/@@download/ENCFF763SSU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF765IPM bed narrowPeak peaks ENCSR674IEI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF080TZU, ENCFF816UDH 6714782 ENCODE Processing Pipeline 708d90e22a8b95c08df45b267d46a6de https://www.encodeproject.org/files/ENCFF765IPM/@@download/ENCFF765IPM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF033VDX bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF058VAU, ENCFF710NTS 5482659 ENCODE Processing Pipeline d15682863af1bf809e031c7812eb0d88 https://www.encodeproject.org/files/ENCFF033VDX/@@download/ENCFF033VDX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF796QIY bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human DNA False 2016-08-24 ENCODE 1 ENCFF523XHJ, ENCFF658DNV 7178952 ENCODE Processing Pipeline 5947fc9058236a998e643417ae7835fb https://www.encodeproject.org/files/ENCFF796QIY/@@download/ENCFF796QIY.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF425DIK bed narrowPeak peaks ENCSR071XWO ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF675VOA, ENCFF722MYF 6648174 ENCODE Processing Pipeline 13f679f989bd340e4fbbe544ed089031 https://www.encodeproject.org/files/ENCFF425DIK/@@download/ENCFF425DIK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF621LUI bed narrowPeak peaks ENCSR401ORC ChIP-seq UBERON:0000996 vagina tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF395GQA, ENCFF662LAZ 5648400 ENCODE Processing Pipeline 982ac4b915148cf68f610c3407a1944f https://www.encodeproject.org/files/ENCFF621LUI/@@download/ENCFF621LUI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF422YRY bed narrowPeak peaks ENCSR979DMN ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF106EBG, ENCFF446BUP 6828813 ENCODE Processing Pipeline 7a37dfbbb5f162e9e432d31b5f161ea1 https://www.encodeproject.org/files/ENCFF422YRY/@@download/ENCFF422YRY.bed.gz hg19 released antibody characterized with exemption ENCFF704OEE bed narrowPeak peaks ENCSR576PII ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF581BEE 6258314 ENCODE Processing Pipeline 9ed8cc3ea172111e27004554c30d375a https://www.encodeproject.org/files/ENCFF704OEE/@@download/ENCFF704OEE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF547MRJ bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF349TZM, ENCFF710NTS 4633130 ENCODE Processing Pipeline 9577c1e0d4b7c256eb256e79d11f8f85 https://www.encodeproject.org/files/ENCFF547MRJ/@@download/ENCFF547MRJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF123VNC bed narrowPeak peaks ENCSR000BIF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF339TGE, ENCFF837IOW 6673423 ENCODE Processing Pipeline 178687de91cc2f51c8b916badafb1d31 https://www.encodeproject.org/files/ENCFF123VNC/@@download/ENCFF123VNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms biological replicates with identical biosample ENCFF526LHJ bed narrowPeak peaks ENCSR441VHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2017-05-17 ENCODE 1 ENCFF032EMH, ENCFF901CND 7179543 ENCODE Processing Pipeline fe18eb06d6f26c1cde22b675086c68d4 https://www.encodeproject.org/files/ENCFF526LHJ/@@download/ENCFF526LHJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF244MXM bed narrowPeak peaks ENCSR036EGV ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 2.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF455LUX, ENCFF475WZW 6257292 ENCODE Processing Pipeline 3822814854158c3c3cc21756e9bedc22 https://www.encodeproject.org/files/ENCFF244MXM/@@download/ENCFF244MXM.bed.gz hg19 released experiment not submitted to GEO ENCFF185PMB bed narrowPeak peaks ENCSR785UCD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF849SJW 5967820 ENCODE Processing Pipeline 1e60f0a907c08d633271b076d87add89 https://www.encodeproject.org/files/ENCFF185PMB/@@download/ENCFF185PMB.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF240CUH bed narrowPeak peaks ENCSR838RUX ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF134TXS, ENCFF472GUK 6440167 ENCODE Processing Pipeline f63e36ef8a94a89e79f64f0f475475af https://www.encodeproject.org/files/ENCFF240CUH/@@download/ENCFF240CUH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF427NVF bed narrowPeak peaks ENCSR000EFC ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CHD1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF437KCG, ENCFF601AUG 5560724 ENCODE Processing Pipeline c9ae08bdfc6341f26f1b5c93bb3e3c2e https://www.encodeproject.org/files/ENCFF427NVF/@@download/ENCFF427NVF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF907WEZ bed narrowPeak peaks ENCSR000DYE ChIP-seq EFO:0001086 A549 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF931GZJ 4642195 ENCODE Processing Pipeline e100ed916c4dab0ebf0aee297c69717c https://www.encodeproject.org/files/ENCFF907WEZ/@@download/ENCFF907WEZ.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF027UPQ bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2017-02-02 ENCODE 1 ENCFF581ZJL, ENCFF623FBO 6005463 ENCODE Processing Pipeline 1353812070a8ae4076074665d90ec565 https://www.encodeproject.org/files/ENCFF027UPQ/@@download/ENCFF027UPQ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF578ZTX bed narrowPeak peaks ENCSR773JBP ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF093JHV, ENCFF734BLH 6361168 ENCODE Processing Pipeline bb59892c0f059e6a8a4d0a88b0c5a8dd https://www.encodeproject.org/files/ENCFF578ZTX/@@download/ENCFF578ZTX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF148ZUB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human DNA False 2018-02-13 ENCODE 1 ENCFF226XCD, ENCFF581ZJL 7040840 ENCODE Processing Pipeline a472f2327980a114d69596d0764f8fb2 https://www.encodeproject.org/files/ENCFF148ZUB/@@download/ENCFF148ZUB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF350CMV bed narrowPeak peaks ENCSR000BHZ ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF406DOL, ENCFF671VNQ 6563796 ENCODE Processing Pipeline 1ddbcddfca57eb9a3c8fa8987af232af https://www.encodeproject.org/files/ENCFF350CMV/@@download/ENCFF350CMV.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF841RCY bed narrowPeak peaks ENCSR735KEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA1-human DNA False 2016-06-30 ENCODE 1 ENCFF235CCD, ENCFF321UJV, ENCFF430SMC 5847826 ENCODE Processing Pipeline d07b88783c8b876b0981da2fa3a322b2 https://www.encodeproject.org/files/ENCFF841RCY/@@download/ENCFF841RCY.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF106WRW bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human DNA False 2016-06-28 ENCODE 1 ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 6366354 ENCODE Processing Pipeline 87292ab1949c87c6aaaff0e84e4cf796 https://www.encodeproject.org/files/ENCFF106WRW/@@download/ENCFF106WRW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF204QNV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human DNA False 2016-10-12 ENCODE 1 ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 6492911 ENCODE Processing Pipeline 9de266ebdbe9e0035b2c922738642fcf https://www.encodeproject.org/files/ENCFF204QNV/@@download/ENCFF204QNV.bed.gz hg19 released antibody characterized with exemption, mixed read lengths ENCFF447WIA bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human DNA False 2018-01-26 ENCODE 1 ENCFF527XUH, ENCFF581ZJL 6622782 ENCODE Processing Pipeline 0fc65caa5a29e1d351889a9150ccd059 https://www.encodeproject.org/files/ENCFF447WIA/@@download/ENCFF447WIA.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF562MDO bed narrowPeak peaks ENCSR655ECZ ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF644OEB, ENCFF679FAU 5187744 ENCODE Processing Pipeline f0a8b258977ad2bda4f02855396e0036 https://www.encodeproject.org/files/ENCFF562MDO/@@download/ENCFF562MDO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF761HEQ bed narrowPeak peaks ENCSR090ZDO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SUZ12-human DNA False 2016-11-18 ENCODE 1 ENCFF529BVI, ENCFF537OFY, ENCFF772FBN 6952302 ENCODE Processing Pipeline 32f6644e93b2f7f0eb8f23edf41cec97 https://www.encodeproject.org/files/ENCFF761HEQ/@@download/ENCFF761HEQ.bed.gz hg19 released mild to moderate bottlenecking ENCFF645BHJ bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human DNA False 2016-03-02 ENCODE 1 ENCFF504MHQ, ENCFF956MXT 5519587 ENCODE Processing Pipeline 5be4408221069af6c93c53b0359ca945 https://www.encodeproject.org/files/ENCFF645BHJ/@@download/ENCFF645BHJ.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF360QVF bed narrowPeak peaks ENCSR309ELI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB1-human DNA False 2017-09-28 ENCODE 1 ENCFF494TFN, ENCFF583FAG 5815308 ENCODE Processing Pipeline 6f5b3be04626f091df23d7f8e0baa47b https://www.encodeproject.org/files/ENCFF360QVF/@@download/ENCFF360QVF.bed.gz hg19 released borderline replicate concordance ENCFF729TIO bed narrowPeak peaks ENCSR534NZI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF195-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF074HXU, ENCFF182WHU 6660403 ENCODE Processing Pipeline ee067f4661ccc7d3613c79a53c464ac7 https://www.encodeproject.org/files/ENCFF729TIO/@@download/ENCFF729TIO.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF037YFB bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-06-14 ENCODE 1 ENCFF135OYM, ENCFF581ZJL 6453786 ENCODE Processing Pipeline 8f2d9cef390dd17b72020147d0bd37c5 https://www.encodeproject.org/files/ENCFF037YFB/@@download/ENCFF037YFB.bed.gz hg19 released low read depth ENCFF146REQ bed narrowPeak peaks ENCSR494TNM ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF561ZZE, ENCFF990EXV 6455685 ENCODE Processing Pipeline 8c21cf6410066a2c361f5eb7b13e2c69 https://www.encodeproject.org/files/ENCFF146REQ/@@download/ENCFF146REQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF535NWA bed narrowPeak peaks ENCSR590CNM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GATA4-human DNA False 2016-03-31 ENCODE 1 ENCFF764QOG, ENCFF929OSU, ENCFF994YBV 6324922 ENCODE Processing Pipeline 242eabd415c97eb62fbf4e139d9cbeb4 https://www.encodeproject.org/files/ENCFF535NWA/@@download/ENCFF535NWA.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF233SWX bed narrowPeak peaks ENCSR770AOR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ELF3-human DNA False 2016-11-08 ENCODE 1 ENCFF137QSY, ENCFF203ABR 6895557 ENCODE Processing Pipeline 5e56bccc1a809447eda14f2747cc3bcc https://www.encodeproject.org/files/ENCFF233SWX/@@download/ENCFF233SWX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF061UUX bed narrowPeak peaks ENCSR961WLZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF913QFK 6606673 ENCODE Processing Pipeline 930238eeeba70b01e12f0675ba28dc18 https://www.encodeproject.org/files/ENCFF061UUX/@@download/ENCFF061UUX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF415TPT bed narrowPeak peaks ENCSR000EBQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF752RXF 4912372 ENCODE Processing Pipeline b6972a9d10e24b86f551d68954cca3d2 https://www.encodeproject.org/files/ENCFF415TPT/@@download/ENCFF415TPT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF969XGP bed narrowPeak peaks ENCSR500WXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RARA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF934ZXS 6378259 ENCODE Processing Pipeline 62d1d53fd38c29c88b0dfb60f33df014 https://www.encodeproject.org/files/ENCFF969XGP/@@download/ENCFF969XGP.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF483NEI bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2016-10-31 ENCODE 1 ENCFF361VCB, ENCFF581ZJL 6513282 ENCODE Processing Pipeline c770544017dc29caa52a24fae3ce7366 https://www.encodeproject.org/files/ENCFF483NEI/@@download/ENCFF483NEI.bed.gz hg19 released low read depth ENCFF154QJU bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF395KST, ENCFF834TUP 7279922 ENCODE Processing Pipeline be6739a8f963d3d5d5c3b71cd6711c23 https://www.encodeproject.org/files/ENCFF154QJU/@@download/ENCFF154QJU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF333FVM bed narrowPeak peaks ENCSR548DDS ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-19 ENCODE 1 ENCFF725LQV, ENCFF798VAD 6421382 ENCODE Processing Pipeline e2a6e8457cc22006e1706794d3c4662d https://www.encodeproject.org/files/ENCFF333FVM/@@download/ENCFF333FVM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF706VXW bed narrowPeak peaks ENCSR757EMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SUZ12-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF445SJA, ENCFF583FAG 6867366 ENCODE Processing Pipeline 3d21eb7cc96e078e4d344741e79da651 https://www.encodeproject.org/files/ENCFF706VXW/@@download/ENCFF706VXW.bed.gz hg19 released ENCFF916SIZ bed narrowPeak peaks ENCSR813DCK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD1-human DNA False 2018-01-26 ENCODE 1 ENCFF204LRJ, ENCFF941TZZ 5872937 ENCODE Processing Pipeline 014543a6096a1419451ccae73d845cfd https://www.encodeproject.org/files/ENCFF916SIZ/@@download/ENCFF916SIZ.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF794YNX bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF717XED 6741435 ENCODE Processing Pipeline e0a0cb8650826c0fd9877d30d8a8bb4c https://www.encodeproject.org/files/ENCFF794YNX/@@download/ENCFF794YNX.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF011EFB bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2016-03-31 ENCODE 1 ENCFF023YMB, ENCFF391CGQ 5422867 ENCODE Processing Pipeline 3bcd5f121b6f622b8ea4fb2fa089e04d https://www.encodeproject.org/files/ENCFF011EFB/@@download/ENCFF011EFB.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF385SRC bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF477SGV, ENCFF656RDN 5644009 ENCODE Processing Pipeline 48301dfbdebe15de7ac1d5f611e071f6 https://www.encodeproject.org/files/ENCFF385SRC/@@download/ENCFF385SRC.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF627BPL bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human DNA False 2016-03-02 ENCODE 1 ENCFF061ITH, ENCFF248TDS 5814015 ENCODE Processing Pipeline 8c7679a34fda59f121cf043aaec21874 https://www.encodeproject.org/files/ENCFF627BPL/@@download/ENCFF627BPL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF813QPT bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human DNA False 2016-06-13 ENCODE 1 ENCFF107DVQ, ENCFF951BLJ 6170472 ENCODE Processing Pipeline 4d42ef9f5b09bb4ed91ffe708bb6f317 https://www.encodeproject.org/files/ENCFF813QPT/@@download/ENCFF813QPT.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF321SGB bed narrowPeak peaks ENCSR502GAX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF652-human DNA False 2016-11-08 ENCODE 1 ENCFF054DOO, ENCFF203ABR 6551829 ENCODE Processing Pipeline c143228d4d5a01de8a82a3a624d1f32e https://www.encodeproject.org/files/ENCFF321SGB/@@download/ENCFF321SGB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF451NAF bed narrowPeak peaks ENCSR159DQO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ERF-human DNA False 2018-02-12 ENCODE 1 ENCFF383BUZ 6933102 ENCODE Processing Pipeline 7cf94c7d878ced840e2b2e1054cbbb08 https://www.encodeproject.org/files/ENCFF451NAF/@@download/ENCFF451NAF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF491AYX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human DNA False 2016-02-05 ENCODE 1 ENCFF227XXD, ENCFF476EGJ 6115452 ENCODE Processing Pipeline dda65365ecde455a4549c284db4677e3 https://www.encodeproject.org/files/ENCFF491AYX/@@download/ENCFF491AYX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF552VIT bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human DNA False 2018-01-26 ENCODE 1 ENCFF592SCF, ENCFF834TUP 6153758 ENCODE Processing Pipeline e0c6f5872a6ab62f22c4015014fdef3c https://www.encodeproject.org/files/ENCFF552VIT/@@download/ENCFF552VIT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF274QRN bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human DNA False 2016-04-01 ENCODE 1 ENCFF444TNY, ENCFF687NJZ 6619368 ENCODE Processing Pipeline 9623122622e543751f25f98e9569871c https://www.encodeproject.org/files/ENCFF274QRN/@@download/ENCFF274QRN.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF495YBQ bed narrowPeak peaks ENCSR580XUK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF122EVJ 7049771 ENCODE Processing Pipeline 78e7fe8188e0d8b580593a3f90966bac https://www.encodeproject.org/files/ENCFF495YBQ/@@download/ENCFF495YBQ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF200AXJ bed narrowPeak peaks ENCSR290QBB ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF076YOL 4381897 ENCODE Processing Pipeline d32054bb514e263fe328dd9b6754b486 https://www.encodeproject.org/files/ENCFF200AXJ/@@download/ENCFF200AXJ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF993QVX bed narrowPeak peaks ENCSR619QFT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF300-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF695AWN 6367521 ENCODE Processing Pipeline e1c6976c5a318c80e66b36ad9305aefd https://www.encodeproject.org/files/ENCFF993QVX/@@download/ENCFF993QVX.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF956UUX bed narrowPeak peaks ENCSR072PWP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF431JBK, ENCFF901CND 6387050 ENCODE Processing Pipeline f841c981f589d266ef57754545a8a6f2 https://www.encodeproject.org/files/ENCFF956UUX/@@download/ENCFF956UUX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF585FQF bed narrowPeak peaks ENCSR589SNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-TFE3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF784VQV 6659834 ENCODE Processing Pipeline 65f50df48778d220b223b40af0ac03ed https://www.encodeproject.org/files/ENCFF585FQF/@@download/ENCFF585FQF.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF997SXB bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human DNA False 2016-03-02 ENCODE 1 ENCFF061QOJ, ENCFF095BVD 5589037 ENCODE Processing Pipeline decbba0f1d48cd087724ff92cac4575c https://www.encodeproject.org/files/ENCFF997SXB/@@download/ENCFF997SXB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF651APA bed narrowPeak peaks ENCSR244ZAO ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF116QLL 6869935 ENCODE Processing Pipeline 005f800ce8193fa33ec1214886e6d4dc https://www.encodeproject.org/files/ENCFF651APA/@@download/ENCFF651APA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF874MIZ bed narrowPeak peaks ENCSR346DKN ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF257LFE 6608434 ENCODE Processing Pipeline bd356fdc391777a77a1c5fe4fb3c377a https://www.encodeproject.org/files/ENCFF874MIZ/@@download/ENCFF874MIZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF552GWT bed narrowPeak peaks ENCSR706YUH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF828ZWQ, ENCFF901CND 7029358 ENCODE Processing Pipeline 65b8cfef03b9dc79d02f3cde64755b8c https://www.encodeproject.org/files/ENCFF552GWT/@@download/ENCFF552GWT.bed.gz hg19 released mild to moderate bottlenecking ENCFF037OER bed narrowPeak peaks ENCSR501LEH ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF540TEB 6381640 ENCODE Processing Pipeline 7d9497f3a57f423bbea4e87875962eb8 https://www.encodeproject.org/files/ENCFF037OER/@@download/ENCFF037OER.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF484FFL bed narrowPeak peaks ENCSR432OIW ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF477OJL 6478668 ENCODE Processing Pipeline a1f4e5f7bd44b1c1a53e806299af61df https://www.encodeproject.org/files/ENCFF484FFL/@@download/ENCFF484FFL.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF167UCC bed narrowPeak peaks ENCSR569SZK ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF295NCW, ENCFF418BQZ 6297643 ENCODE Processing Pipeline 76864e59ed124ab4e38fca8465287cc0 https://www.encodeproject.org/files/ENCFF167UCC/@@download/ENCFF167UCC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF042IVB bed narrowPeak peaks ENCSR862NOW ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF247QPH 5882012 ENCODE Processing Pipeline e05bd21083630823c426aa307c5035f7 https://www.encodeproject.org/files/ENCFF042IVB/@@download/ENCFF042IVB.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF698JRH bed narrowPeak peaks ENCSR217KAL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2018-03-06 ENCODE 1 ENCFF272ODU, ENCFF999VBZ 6783120 ENCODE Processing Pipeline f533ef94c25c8900ea39f39154424d35 https://www.encodeproject.org/files/ENCFF698JRH/@@download/ENCFF698JRH.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO insufficient read depth ENCFF363YVH bed narrowPeak peaks ENCSR182QWU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2017-03-16 ENCODE 1 ENCFF465AXY 5932161 ENCODE Processing Pipeline ab7e414613dcace052d721b2ffdde662 https://www.encodeproject.org/files/ENCFF363YVH/@@download/ENCFF363YVH.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF527RBD bed narrowPeak peaks ENCSR799GOY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YBX1-human DNA False 2016-09-01 ENCODE 1 ENCFF449NNE, ENCFF449XWV 6353137 ENCODE Processing Pipeline f1e171f6771702c5c096fcc70a65600a https://www.encodeproject.org/files/ENCFF527RBD/@@download/ENCFF527RBD.bed.gz hg19 released antibody characterized with exemption ENCFF141OZE bed narrowPeak peaks ENCSR009KLQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF16-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF836CXT 7128683 ENCODE Processing Pipeline c3049369dc3e072deefb6f67ea51bacc https://www.encodeproject.org/files/ENCFF141OZE/@@download/ENCFF141OZE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF548UHD bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF676XEB 6799104 ENCODE Processing Pipeline e68b977e6644a4f73fac05bed4c8dc48 https://www.encodeproject.org/files/ENCFF548UHD/@@download/ENCFF548UHD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF444VGY bed narrowPeak peaks ENCSR978LQC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF054XTB, ENCFF559IFX 7119153 ENCODE Processing Pipeline b7d3368470103c4a5374888a107557cf https://www.encodeproject.org/files/ENCFF444VGY/@@download/ENCFF444VGY.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF563WGT bed narrowPeak peaks ENCSR980OPB ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF489YYE 5389099 ENCODE Processing Pipeline 0f310cd34a9ae63e588e87d6d7495e81 https://www.encodeproject.org/files/ENCFF563WGT/@@download/ENCFF563WGT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption missing control alignments ENCFF173YLW bed narrowPeak peaks ENCSR421QXA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF571-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF809ZWP 6618509 ENCODE Processing Pipeline 317647d1d1afdeff3354e77ddbabcfbc https://www.encodeproject.org/files/ENCFF173YLW/@@download/ENCFF173YLW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF537WGM bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human DNA False 2016-12-19 ENCODE 1 ENCFF207HQD, ENCFF581ZJL 6921340 ENCODE Processing Pipeline 93a0ffdf4ad41df3b9c58f6d97807eab https://www.encodeproject.org/files/ENCFF537WGM/@@download/ENCFF537WGM.bed.gz hg19 released antibody characterized with exemption ENCFF142NKY bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF799EWO 4723720 ENCODE Processing Pipeline 6214e16ca81f3b2d968f7a7bd1723571 https://www.encodeproject.org/files/ENCFF142NKY/@@download/ENCFF142NKY.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF969HTA bed narrowPeak peaks ENCSR264RJX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens POU5F1-human DNA False 2016-06-16 ENCODE 1 ENCFF017YFK, ENCFF654GAA 4919201 ENCODE Processing Pipeline a6c06e33ccec7b7897bd661361e841cf https://www.encodeproject.org/files/ENCFF969HTA/@@download/ENCFF969HTA.bed.gz hg19 archived low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF291TVB bed narrowPeak peaks ENCSR074VAI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIK1-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF894WCT 6632863 ENCODE Processing Pipeline 57d8154f0340c4642afeb2302344b96c https://www.encodeproject.org/files/ENCFF291TVB/@@download/ENCFF291TVB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF804ZDO bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human DNA False 2016-12-05 ENCODE 1 ENCFF474PWT, ENCFF581ZJL 6601859 ENCODE Processing Pipeline 422447557aaa8aeac1f203d11e682a59 https://www.encodeproject.org/files/ENCFF804ZDO/@@download/ENCFF804ZDO.bed.gz hg19 released ENCFF041YKU bed narrowPeak peaks ENCSR304XUZ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF152VGP, ENCFF531FEB 6162798 ENCODE Processing Pipeline 95c7ae3bbbc4d9d94190649e99d2865d https://www.encodeproject.org/files/ENCFF041YKU/@@download/ENCFF041YKU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF447SAN bed narrowPeak peaks ENCSR417DKD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFXL1-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF891FAJ 6712500 ENCODE Processing Pipeline a7548a30fb8493776cb82cc5dc6f7e59 https://www.encodeproject.org/files/ENCFF447SAN/@@download/ENCFF447SAN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF875LKY bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2018-01-26 ENCODE 1 ENCFF183PSA, ENCFF581ZJL 6223542 ENCODE Processing Pipeline 9c4fad93bb6a7dabb0c176f1437295d4 https://www.encodeproject.org/files/ENCFF875LKY/@@download/ENCFF875LKY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF518NZX bed narrowPeak peaks ENCSR482PMN ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF577BMV, ENCFF634EFZ 6113160 ENCODE Processing Pipeline e92d03e16994aeef7e8dc54222eedb18 https://www.encodeproject.org/files/ENCFF518NZX/@@download/ENCFF518NZX.bed.gz hg19 released antibody characterized with exemption ENCFF346PQE bed narrowPeak peaks ENCSR932ZMX ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF380SLU 4618205 ENCODE Processing Pipeline ad133f9bd7f1ba8b63b9aff213a67e14 https://www.encodeproject.org/files/ENCFF346PQE/@@download/ENCFF346PQE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample ENCFF794MZC bed narrowPeak peaks ENCSR920FID ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF661OHD, ENCFF713HHQ 7187896 ENCODE Processing Pipeline 7a355c3791a54b312d9f5f85a4f123ee https://www.encodeproject.org/files/ENCFF794MZC/@@download/ENCFF794MZC.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF281EIU bed narrowPeak peaks ENCSR303GFI ChIP-seq EFO:0002323 RWPE1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF536FQU, ENCFF731XOB, ENCFF834FWS 6800168 ENCODE Processing Pipeline 0fa72eaca56d79631ec62e41fa22699f https://www.encodeproject.org/files/ENCFF281EIU/@@download/ENCFF281EIU.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF486FET bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human DNA False 2017-08-25 ENCODE 1 ENCFF160VXC, ENCFF189FPT, ENCFF834TUP 7239229 ENCODE Processing Pipeline ec683eed7ca6abdecb559cba9830d724 https://www.encodeproject.org/files/ENCFF486FET/@@download/ENCFF486FET.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, inconsistent platforms, moderate library complexity ENCFF380AQD bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human DNA False 2016-11-17 ENCODE 1 ENCFF252BMK, ENCFF581ZJL 6596604 ENCODE Processing Pipeline adb8150c7c79973e22d5a89c5e5f8249 https://www.encodeproject.org/files/ENCFF380AQD/@@download/ENCFF380AQD.bed.gz hg19 released low read depth ENCFF263GIU bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF203FSJ 6683557 ENCODE Processing Pipeline 34dbe85b30546fabcbdbabec5003e12f https://www.encodeproject.org/files/ENCFF263GIU/@@download/ENCFF263GIU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF612BZJ bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF845QLW 6936134 ENCODE Processing Pipeline d72f450110faad9e7f9859b35d269540 https://www.encodeproject.org/files/ENCFF612BZJ/@@download/ENCFF612BZJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF216MFC bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP 7126296 ENCODE Processing Pipeline ba5c63ea5c27ef70e0538c87ad9ca064 https://www.encodeproject.org/files/ENCFF216MFC/@@download/ENCFF216MFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF276XLL bed narrowPeak peaks ENCSR936JHB ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF629VOX, ENCFF978EZN 7223230 ENCODE Processing Pipeline 49e79d9ec02c502d92c45e7ff67c44cd https://www.encodeproject.org/files/ENCFF276XLL/@@download/ENCFF276XLL.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF715OSJ bed narrowPeak peaks ENCSR175FLL ChIP-seq UBERON:0001621 coronary artery tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF358FRE, ENCFF683KMT 6005721 ENCODE Processing Pipeline 452c1dfa172cd88e6593b974ca9487f3 https://www.encodeproject.org/files/ENCFF715OSJ/@@download/ENCFF715OSJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO severe bottlenecking ENCFF379YTS bed narrowPeak peaks ENCSR817HTJ ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF006FDF, ENCFF666SAQ 6094016 ENCODE Processing Pipeline 93a10bf39290950d81f25a84e4a14d41 https://www.encodeproject.org/files/ENCFF379YTS/@@download/ENCFF379YTS.bed.gz hg19 released experiment not submitted to GEO ENCFF965ZSK bed narrowPeak peaks ENCSR147VKD ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF723ZTU 5086733 ENCODE Processing Pipeline 2c6ed487927383df49e0eafced44efb0 https://www.encodeproject.org/files/ENCFF965ZSK/@@download/ENCFF965ZSK.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF032HCI bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF899VCS 5573738 ENCODE Processing Pipeline d76d00eebebc49f8761c93cad455787a https://www.encodeproject.org/files/ENCFF032HCI/@@download/ENCFF032HCI.bed.gz hg19 released low read depth ENCFF052CCG bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP 6399337 ENCODE Processing Pipeline ea0184726994327edd2dadc7190bb8fe https://www.encodeproject.org/files/ENCFF052CCG/@@download/ENCFF052CCG.bed.gz hg19 released ENCFF025MTA bed narrowPeak peaks ENCSR016UEH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA see document see document False 2016-11-08 ENCODE 1 ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT 5657686 ENCODE Processing Pipeline 1332477ed89d41eeebcef99f85c146c5 https://www.encodeproject.org/files/ENCFF025MTA/@@download/ENCFF025MTA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF249NQH bed narrowPeak peaks ENCSR721AHD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF376VVJ, ENCFF460MTF 6701374 ENCODE Processing Pipeline 8df7318798834bbce0ce98192ccbd380 https://www.encodeproject.org/files/ENCFF249NQH/@@download/ENCFF249NQH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF875ITP bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human DNA False 2017-01-08 ENCODE 1 ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 6496431 ENCODE Processing Pipeline 573f75d1fa10e63ede230866edb301d9 https://www.encodeproject.org/files/ENCFF875ITP/@@download/ENCFF875ITP.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF084ILX bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF063DLZ, ENCFF581ZJL 6667597 ENCODE Processing Pipeline 360bae6f96a56e295c8cf96a5d962f32 https://www.encodeproject.org/files/ENCFF084ILX/@@download/ENCFF084ILX.bed.gz hg19 released ENCFF167CVF bed narrowPeak peaks ENCSR142SQX ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-12-08 ENCODE 1 ENCFF354AJH, ENCFF976VAT 6819289 ENCODE Processing Pipeline 2935b91b05715056a513a6d09466f978 https://www.encodeproject.org/files/ENCFF167CVF/@@download/ENCFF167CVF.bed.gz hg19 released antibody characterized with exemption ENCFF263MVV bed narrowPeak peaks ENCSR408XTO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF244RSE, ENCFF639BGL 5954022 ENCODE Processing Pipeline c1d52c20c5dfa9e2c17b268a4a309f4a https://www.encodeproject.org/files/ENCFF263MVV/@@download/ENCFF263MVV.bed.gz hg19 released antibody characterized with exemption ENCFF501SMZ bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF573SRY 5315049 ENCODE Processing Pipeline 42017006100aada57107d4935adbead8 https://www.encodeproject.org/files/ENCFF501SMZ/@@download/ENCFF501SMZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF373SQY bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF012IGR, ENCFF578ISP 5147423 ENCODE Processing Pipeline 73a37eb0fe3c63684da32b63ebfb2efc https://www.encodeproject.org/files/ENCFF373SQY/@@download/ENCFF373SQY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF530LEM bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF958RAN 5274330 ENCODE Processing Pipeline 2976755b3d2aaca90dab9b9f90bc820b https://www.encodeproject.org/files/ENCFF530LEM/@@download/ENCFF530LEM.bed.gz hg19 released low read length, low read depth ENCFF993ZMK bed narrowPeak peaks ENCSR300KUL ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF734MVF 4865823 ENCODE Processing Pipeline a0d59ab605d344fde3564f85bcc92357 https://www.encodeproject.org/files/ENCFF993ZMK/@@download/ENCFF993ZMK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption missing control alignments ENCFF223LYF bed narrowPeak peaks ENCSR412QGD ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF027GOA, ENCFF270VTL 7037293 ENCODE Processing Pipeline ff21aa3ace4b79eb5c8a1f825fb6b198 https://www.encodeproject.org/files/ENCFF223LYF/@@download/ENCFF223LYF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF640NTC bed narrowPeak peaks ENCSR704IJM ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF392TYJ 4311906 ENCODE Processing Pipeline 65048a4c70c6c1c54868134545226084 https://www.encodeproject.org/files/ENCFF640NTC/@@download/ENCFF640NTC.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF749ROX bed narrowPeak peaks ENCSR428BKN ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF716USG, ENCFF941RBT 6757803 ENCODE Processing Pipeline da994bad281aa7d2a9a58d49c59a1699 https://www.encodeproject.org/files/ENCFF749ROX/@@download/ENCFF749ROX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF969JFO bed narrowPeak peaks ENCSR736ZKL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF148-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF182WHU, ENCFF212MCV 6816434 ENCODE Processing Pipeline 9297a582bb3420179db63f732866029e https://www.encodeproject.org/files/ENCFF969JFO/@@download/ENCFF969JFO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF357IME bed narrowPeak peaks ENCSR431TLD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCE1-human DNA False 2017-06-26 ENCODE 1 ENCFF042NBZ, ENCFF447KVS, ENCFF823USR 6233745 ENCODE Processing Pipeline 40ae888cd5c8e4bbba47e54bea6bf0de https://www.encodeproject.org/files/ENCFF357IME/@@download/ENCFF357IME.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF309BHZ bed narrowPeak peaks ENCSR968QDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCE1-human DNA False 2017-06-07 ENCODE 1 ENCFF139OUQ, ENCFF172XZA, ENCFF843IXX 6387549 ENCODE Processing Pipeline d3abd3a0e8ab563150f2e9a0aa3a7168 https://www.encodeproject.org/files/ENCFF309BHZ/@@download/ENCFF309BHZ.bed.gz hg19 released borderline replicate concordance ENCFF591HNR bed narrowPeak peaks ENCSR829HTO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF068ZJF, ENCFF234PLD 6061262 ENCODE Processing Pipeline 6efa100e6cc623afc54dcf99f03b75f8 https://www.encodeproject.org/files/ENCFF591HNR/@@download/ENCFF591HNR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF266MOP bed narrowPeak peaks ENCSR382PVA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF065JBC, ENCFF375WCZ 5105451 ENCODE Processing Pipeline b4a399e5a8d27927a943d854366ed12e https://www.encodeproject.org/files/ENCFF266MOP/@@download/ENCFF266MOP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF816EGL bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human DNA False 2016-07-28 ENCODE 1 ENCFF030VNO, ENCFF581ZJL 7132065 ENCODE Processing Pipeline 0680be1dc095e0e4b488f230d0f6608d https://www.encodeproject.org/files/ENCFF816EGL/@@download/ENCFF816EGL.bed.gz hg19 released ENCFF922ONM bed narrowPeak peaks ENCSR590QQP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FUS-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF580VRU, ENCFF741JBT, ENCFF951UMF 5898943 ENCODE Processing Pipeline 980b8474b7ed76b919c62018583495c3 https://www.encodeproject.org/files/ENCFF922ONM/@@download/ENCFF922ONM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing control alignments ENCFF092GNG bed narrowPeak peaks ENCSR618QYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF308BIP, ENCFF872MDZ 5203560 ENCODE Processing Pipeline 7b59c16851efa82e88aa0df8ed64ecdf https://www.encodeproject.org/files/ENCFF092GNG/@@download/ENCFF092GNG.bed.gz hg19 released antibody characterized with exemption ENCFF806NLH bed narrowPeak peaks ENCSR775VUA ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF040UMF, ENCFF872MDZ 5510644 ENCODE Processing Pipeline ca4fb3f490994d5bb429aa644fa5910b https://www.encodeproject.org/files/ENCFF806NLH/@@download/ENCFF806NLH.bed.gz hg19 released antibody characterized with exemption ENCFF399TIE bed narrowPeak peaks ENCSR028YEV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF230HKK, ENCFF569UCD 7083930 ENCODE Processing Pipeline c902b02fece46d7fe330c058e041f453 https://www.encodeproject.org/files/ENCFF399TIE/@@download/ENCFF399TIE.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF739MCU bed narrowPeak peaks ENCSR038YKU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF027EKQ, ENCFF880STQ 6389537 ENCODE Processing Pipeline 82040a6cee730d66d9f28f7484867b64 https://www.encodeproject.org/files/ENCFF739MCU/@@download/ENCFF739MCU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF026GZI bed narrowPeak peaks ENCSR925BFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GATAD2A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF257FKU 6666564 ENCODE Processing Pipeline df26a8b53cc302a97c3bc06c156c9591 https://www.encodeproject.org/files/ENCFF026GZI/@@download/ENCFF026GZI.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF480ZUI bed narrowPeak peaks ENCSR019NPF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SP5-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF451EVJ 6462431 ENCODE Processing Pipeline 26588437b4708bd22563a17f3b2860f9 https://www.encodeproject.org/files/ENCFF480ZUI/@@download/ENCFF480ZUI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF363MKS bed narrowPeak peaks ENCSR005LPI ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF062SIS, ENCFF204YUH 5172486 ENCODE Processing Pipeline 840c79f7b59445c33208261f59ed8b26 https://www.encodeproject.org/files/ENCFF363MKS/@@download/ENCFF363MKS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF438FDS bed narrowPeak peaks ENCSR441KFW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MXD4-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF748DXR 7141424 ENCODE Processing Pipeline def7ee0748db2c0c01a8537acbac52ad https://www.encodeproject.org/files/ENCFF438FDS/@@download/ENCFF438FDS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review ENCFF657HTU bed narrowPeak peaks ENCSR790VEV ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF016BGY, ENCFF779DOP 5033900 ENCODE Processing Pipeline b55057f4521fac98c567c3be33165252 https://www.encodeproject.org/files/ENCFF657HTU/@@download/ENCFF657HTU.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF429PCJ bed narrowPeak peaks ENCSR868JLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF550BKL 6097462 ENCODE Processing Pipeline 18c242d6c26493c86f0086b8cf848e64 https://www.encodeproject.org/files/ENCFF429PCJ/@@download/ENCFF429PCJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance missing control alignments ENCFF680PCI bed narrowPeak peaks ENCSR872EVQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF769WSP 5525149 ENCODE Processing Pipeline 64484b130f50b1571b4e074170eefb80 https://www.encodeproject.org/files/ENCFF680PCI/@@download/ENCFF680PCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF572PWT bed narrowPeak peaks ENCSR991ADX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens U2AF2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF781OBT 5141108 ENCODE Processing Pipeline 180148d3496eda754af9bb9ffb8b5658 https://www.encodeproject.org/files/ENCFF572PWT/@@download/ENCFF572PWT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF111XHJ bed narrowPeak peaks ENCSR337NQP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF877UQR 5892761 ENCODE Processing Pipeline 11545fe48811c23bdb63d0e4527d0074 https://www.encodeproject.org/files/ENCFF111XHJ/@@download/ENCFF111XHJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF256VHD bed narrowPeak peaks ENCSR960MDF ChIP-seq UBERON:0001496 ascending aorta tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF089ZLE, ENCFF840LTU 6076917 ENCODE Processing Pipeline 4864a2dbaf20706a0f16e60bfebca823 https://www.encodeproject.org/files/ENCFF256VHD/@@download/ENCFF256VHD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF565ONA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human DNA False 2018-01-26 ENCODE 1 ENCFF376JWD, ENCFF581ZJL 6489843 ENCODE Processing Pipeline 37411dc101264ed436539b6d7e933bd5 https://www.encodeproject.org/files/ENCFF565ONA/@@download/ENCFF565ONA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF256WMD bed narrowPeak peaks ENCSR092OVN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXA3-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF684RLL 6552104 ENCODE Processing Pipeline 6239b30ab915bf541e55aa8971e430a6 https://www.encodeproject.org/files/ENCFF256WMD/@@download/ENCFF256WMD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF828HUH bed narrowPeak peaks ENCSR856JJB ChIP-seq EFO:0007610 RWPE2 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF225ESX, ENCFF240KUX, ENCFF564TQN 6890491 ENCODE Processing Pipeline 0f2ac077aab5dae5d0181d0a59da7483 https://www.encodeproject.org/files/ENCFF828HUH/@@download/ENCFF828HUH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF039VDD bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA False 2018-01-26 ENCODE 1 ENCFF264WWV, ENCFF581ZJL 5728057 ENCODE Processing Pipeline 0cca0ee2088dd951e375f9451e72b208 https://www.encodeproject.org/files/ENCFF039VDD/@@download/ENCFF039VDD.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF060UON bed narrowPeak peaks ENCSR269TNX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GABPA-human DNA False 2016-10-31 ENCODE 1 ENCFF012XJU, ENCFF943PEE 5878604 ENCODE Processing Pipeline bd67f7069e6e6856ed84be2f0a2f89af https://www.encodeproject.org/files/ENCFF060UON/@@download/ENCFF060UON.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF597VSW bed narrowPeak peaks ENCSR044FMM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF978RGD 6851019 ENCODE Processing Pipeline 841e0af7d4d68b89ccbe1a526b4e707b https://www.encodeproject.org/files/ENCFF597VSW/@@download/ENCFF597VSW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF156CAB bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF641ACA 7197623 ENCODE Processing Pipeline 258dc50cffc52d10458538e5364f12b1 https://www.encodeproject.org/files/ENCFF156CAB/@@download/ENCFF156CAB.bed.gz hg19 released ENCFF023UTX bed narrowPeak peaks ENCSR116RGC ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF570ZQD 5068042 ENCODE Processing Pipeline fea0552bff9a87aeebd12782368572a8 https://www.encodeproject.org/files/ENCFF023UTX/@@download/ENCFF023UTX.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF119HTJ bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP 7158688 ENCODE Processing Pipeline 75295dfe55f5bd4bfd290e17652e20fa https://www.encodeproject.org/files/ENCFF119HTJ/@@download/ENCFF119HTJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms ENCFF325AWC bed narrowPeak peaks ENCSR173EEH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens COPS2-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF657QCE, ENCFF823USR 6304967 ENCODE Processing Pipeline 0c0361fef883013c7e69fcf89afd2d03 https://www.encodeproject.org/files/ENCFF325AWC/@@download/ENCFF325AWC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF734XYJ bed narrowPeak peaks ENCSR429CLV ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT 6540954 ENCODE Processing Pipeline fdb2f244a6d617aa57f75313327cd2e9 https://www.encodeproject.org/files/ENCFF734XYJ/@@download/ENCFF734XYJ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF119UKJ bed narrowPeak peaks ENCSR784VIQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C1-human DNA False 2017-06-07 ENCODE 1 ENCFF126ECH, ENCFF901CND 5915378 ENCODE Processing Pipeline bcb85655ff06ed19a2fc2aa516084aaf https://www.encodeproject.org/files/ENCFF119UKJ/@@download/ENCFF119UKJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF364IZN bed narrowPeak peaks ENCSR327RFM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PAF1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF763FHB 6724470 ENCODE Processing Pipeline 14375e83a7360094fbedf46297c45188 https://www.encodeproject.org/files/ENCFF364IZN/@@download/ENCFF364IZN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF399PWD bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA False 2018-01-26 ENCODE 1 ENCFF304WKT, ENCFF581ZJL 7116658 ENCODE Processing Pipeline 45aaf01c6c66e2a1da2dd08eeffe4503 https://www.encodeproject.org/files/ENCFF399PWD/@@download/ENCFF399PWD.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF875EQQ bed narrowPeak peaks ENCSR476BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA False 2017-02-01 ENCODE 1 ENCFF228PUZ, ENCFF449NNE 5572548 ENCODE Processing Pipeline 40fda2019f983361b3df27644ef4d7ab https://www.encodeproject.org/files/ENCFF875EQQ/@@download/ENCFF875EQQ.bed.gz hg19 released borderline replicate concordance ENCFF945BEK bed narrowPeak peaks ENCSR562NOP ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2017-01-31 ENCODE 1 ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY 6466783 ENCODE Processing Pipeline 2ca64a8ab91602a3a67b28af44f89918 https://www.encodeproject.org/files/ENCFF945BEK/@@download/ENCFF945BEK.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF783CTL bed narrowPeak peaks ENCSR620DUQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2017-09-28 ENCODE 1 ENCFF130QXF, ENCFF583FAG 6775719 ENCODE Processing Pipeline bfd1a9f1978dd0fb81625c4d63561168 https://www.encodeproject.org/files/ENCFF783CTL/@@download/ENCFF783CTL.bed.gz hg19 released ENCFF254LDX bed narrowPeak peaks ENCSR173CTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF580-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF967IZV 7013563 ENCODE Processing Pipeline 0e58a5c7fbe4d0b92aff2b009ebde20f https://www.encodeproject.org/files/ENCFF254LDX/@@download/ENCFF254LDX.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF885JHN bed narrowPeak peaks ENCSR235OVI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFKBIZ-human DNA False 2018-02-10 ENCODE 1 ENCFF581OTA 6249790 ENCODE Processing Pipeline cb6d35784d01014255949dc177b443da https://www.encodeproject.org/files/ENCFF885JHN/@@download/ENCFF885JHN.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF902RAQ bed narrowPeak peaks ENCSR582ZOA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFIB-human DNA False 2017-05-17 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF765SYH 7052623 ENCODE Processing Pipeline b8b98622b602dc19e76d0f6ecd5f7f22 https://www.encodeproject.org/files/ENCFF902RAQ/@@download/ENCFF902RAQ.bed.gz hg19 released ENCFF998YLT bed narrowPeak peaks ENCSR027UFT ChIP-seq EFO:0006365 C4-2B cell line Homo sapiens ZFX-human DNA False 2017-05-18 ENCODE 1 ENCFF704DUW, ENCFF801WHL, ENCFF923EBC 7288711 ENCODE Processing Pipeline 977a1ece93a9c9260888b2f6670b0017 https://www.encodeproject.org/files/ENCFF998YLT/@@download/ENCFF998YLT.bed.gz hg19 released NTR biosample ENCFF759LYG bed narrowPeak peaks ENCSR196HOM ChIP-seq CL:0002231 epithelial cell of prostate primary cell Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF574AVO, ENCFF601MGR 6658556 ENCODE Processing Pipeline 6bf4ae8050845b3e67f3a7059e159a6d https://www.encodeproject.org/files/ENCFF759LYG/@@download/ENCFF759LYG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF568PRH bed narrowPeak peaks ENCSR686SOV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NCOA3-human DNA False 2017-09-28 ENCODE 1 ENCFF122TOW, ENCFF583FAG 5872686 ENCODE Processing Pipeline 72c7583248caf8a4682451459800bdef https://www.encodeproject.org/files/ENCFF568PRH/@@download/ENCFF568PRH.bed.gz hg19 released borderline replicate concordance ENCFF011GSD bed narrowPeak peaks ENCSR847XGE ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ 7009034 ENCODE Processing Pipeline 389d592272571e25cbc0a3b3aa6dead8 https://www.encodeproject.org/files/ENCFF011GSD/@@download/ENCFF011GSD.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF416REC bed narrowPeak peaks ENCSR442VBJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RAD51-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF141OWA 6074062 ENCODE Processing Pipeline 39183c4e4f803671ec6d19a4ee3b8718 https://www.encodeproject.org/files/ENCFF416REC/@@download/ENCFF416REC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF650KWX bed narrowPeak peaks ENCSR015TKV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BCLAF1-human DNA False 2017-05-17 ENCODE 1 ENCFF172XZA, ENCFF690ANL, ENCFF843IXX 6459142 ENCODE Processing Pipeline d34a5afcdb811a6026d8aee7d8205db2 https://www.encodeproject.org/files/ENCFF650KWX/@@download/ENCFF650KWX.bed.gz hg19 released mild to moderate bottlenecking ENCFF182RMK bed narrowPeak peaks ENCSR402JAC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF574-human DNA False 2018-01-26 ENCODE 1 ENCFF377ZFJ, ENCFF447KVS, ENCFF823USR 6880641 ENCODE Processing Pipeline dfb6dafb35949a303c044cd06491bf37 https://www.encodeproject.org/files/ENCFF182RMK/@@download/ENCFF182RMK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF797UDY bed narrowPeak peaks ENCSR825RBI ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF018XQD, ENCFF978LUN 5449500 ENCODE Processing Pipeline da805062dcd6c3b30b748e0096150216 https://www.encodeproject.org/files/ENCFF797UDY/@@download/ENCFF797UDY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF576BTO bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human DNA False 2017-09-28 ENCODE 1 ENCFF359SWY, ENCFF581ZJL 6637717 ENCODE Processing Pipeline 6588a2d0a029d0bb80a0e2cd4a096786 https://www.encodeproject.org/files/ENCFF576BTO/@@download/ENCFF576BTO.bed.gz hg19 released antibody characterized with exemption ENCFF887ZYJ bed narrowPeak peaks ENCSR248IMH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NFRKB-human DNA False 2017-05-17 ENCODE 1 ENCFF401WQB, ENCFF447KVS, ENCFF823USR 6094838 ENCODE Processing Pipeline 6f4eaca3fabb58dbeafc24774a441249 https://www.encodeproject.org/files/ENCFF887ZYJ/@@download/ENCFF887ZYJ.bed.gz hg19 released mild to moderate bottlenecking ENCFF769MWV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF477SGV, ENCFF551QCK 4718222 ENCODE Processing Pipeline 19256ba74f45415382b6ea8f51a7244a https://www.encodeproject.org/files/ENCFF769MWV/@@download/ENCFF769MWV.bed.gz hg19 released low read length, low read depth ENCFF956IFC bed narrowPeak peaks ENCSR812FNU ChIP-seq CL:1001606 foreskin keratinocyte primary cell Homo sapiens calcium 1.2 mM 5.5 day CTCF-human DNA formaldehyde False 2017-10-10 GGR 1 ENCFF697WPU, ENCFF877SGM 6353375 ENCODE Processing Pipeline 266359c5c10dd17de84f8ac02cbd4840 https://www.encodeproject.org/files/ENCFF956IFC/@@download/ENCFF956IFC.bed.gz hg19 released experiment not submitted to GEO ENCFF780FQB bed narrowPeak peaks ENCSR460XGV ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF447KVS, ENCFF554XHJ, ENCFF823USR 6517013 ENCODE Processing Pipeline 3f5be1ab94c5bb313152ebd9d77f9c8a https://www.encodeproject.org/files/ENCFF780FQB/@@download/ENCFF780FQB.bed.gz hg19 released ENCFF387NDE bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human DNA False 2017-05-17 ENCODE 1 ENCFF412LRS, ENCFF581ZJL 6967086 ENCODE Processing Pipeline 36aa5a16f94265a8106622b095f3da35 https://www.encodeproject.org/files/ENCFF387NDE/@@download/ENCFF387NDE.bed.gz hg19 released borderline replicate concordance ENCFF065MTT bed narrowPeak peaks ENCSR350PUV ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF267HPF, ENCFF983SGW 6807105 ENCODE Processing Pipeline 414146b6dd2b4f0a7f6021a7cab28692 https://www.encodeproject.org/files/ENCFF065MTT/@@download/ENCFF065MTT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF662PBM bed narrowPeak peaks ENCSR528UBJ ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF214BIG 5508970 ENCODE Processing Pipeline 59ceb2705275ef86a80deae6ae72c4bb https://www.encodeproject.org/files/ENCFF662PBM/@@download/ENCFF662PBM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF033XQB bed narrowPeak peaks ENCSR995QNB ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF055UXI, ENCFF641MHP 6837061 ENCODE Processing Pipeline c2708a0e7a8aaf4648fc520b5496a8d8 https://www.encodeproject.org/files/ENCFF033XQB/@@download/ENCFF033XQB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF983AVN bed narrowPeak peaks ENCSR939FGB ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF241EOY, ENCFF339SFQ 6959954 ENCODE Processing Pipeline 8cc99a44030761bd1e07ff83ba567fdb https://www.encodeproject.org/files/ENCFF983AVN/@@download/ENCFF983AVN.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF977AFL bed narrowPeak peaks ENCSR734ZOZ ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF485STY, ENCFF693IBS 6177254 ENCODE Processing Pipeline 5d4a34cbe430ca9d611c8a900578e029 https://www.encodeproject.org/files/ENCFF977AFL/@@download/ENCFF977AFL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF394RPT bed narrowPeak peaks ENCSR491PTJ ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF498ZOO, ENCFF501SMY 5477979 ENCODE Processing Pipeline 14cc0d2d1c455cf106c34196e8ef57df https://www.encodeproject.org/files/ENCFF394RPT/@@download/ENCFF394RPT.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF395YWQ bed narrowPeak peaks ENCSR362NWP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF24-human DNA False 2017-06-26 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF951PIU 6865411 ENCODE Processing Pipeline 1755cfb6a6cc560ae713cad3f2c0ae86 https://www.encodeproject.org/files/ENCFF395YWQ/@@download/ENCFF395YWQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF569JWR bed narrowPeak peaks ENCSR173ZVL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF592-human DNA False 2017-06-26 ENCODE 1 ENCFF873ZZW, ENCFF901CND 5807064 ENCODE Processing Pipeline 4dfaccae07a979933d1964cf64e81ddb https://www.encodeproject.org/files/ENCFF569JWR/@@download/ENCFF569JWR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF638THQ bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human DNA False 2016-01-14 ENCODE 1 ENCFF308BKD, ENCFF500EQZ 6831070 ENCODE Processing Pipeline f0b5bdd047d8393493505853dc72eedc https://www.encodeproject.org/files/ENCFF638THQ/@@download/ENCFF638THQ.bed.gz hg19 released missing genetic modification characterization ENCFF758TWM bed narrowPeak peaks ENCSR487ASM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SMARCA5-human DNA False 2017-06-07 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF825FCH 6485276 ENCODE Processing Pipeline 16d96883d63ca8def66df09137837f36 https://www.encodeproject.org/files/ENCFF758TWM/@@download/ENCFF758TWM.bed.gz hg19 released ENCFF483EHQ bed narrowPeak peaks ENCSR089DTY ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF385SNU, ENCFF720JWD 5252425 ENCODE Processing Pipeline 6cb07ba566d736d39e27317f97de5023 https://www.encodeproject.org/files/ENCFF483EHQ/@@download/ENCFF483EHQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF237DHH bed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF645NAU 4165936 ENCODE Processing Pipeline 6d3d34236cac327fb84020fdc4290f13 https://www.encodeproject.org/files/ENCFF237DHH/@@download/ENCFF237DHH.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF559KAV bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF290MFM, ENCFF834TUP 7220426 ENCODE Processing Pipeline 67f2d90491c50a8dd513d9433326ee96 https://www.encodeproject.org/files/ENCFF559KAV/@@download/ENCFF559KAV.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF245IPV bed narrowPeak peaks ENCSR661XNQ ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF460DKV, ENCFF565VSK 6203883 ENCODE Processing Pipeline 486085900f1e799fbf005557f81f9503 https://www.encodeproject.org/files/ENCFF245IPV/@@download/ENCFF245IPV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF430YKE bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human DNA False 2016-01-14 ENCODE 1 ENCFF004VBD, ENCFF180VYU 5900331 ENCODE Processing Pipeline 38b2cefa01a1fb8d6ce8bf47823a3bd7 https://www.encodeproject.org/files/ENCFF430YKE/@@download/ENCFF430YKE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF308TCJ bed narrowPeak peaks ENCSR916JAC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF075WIK, ENCFF218RTJ 6890739 ENCODE Processing Pipeline 55baeeb2b2d6dc0454d14a11ec243f6b https://www.encodeproject.org/files/ENCFF308TCJ/@@download/ENCFF308TCJ.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF279NYK bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human DNA False 2016-09-01 ENCODE 1 ENCFF367HYB, ENCFF581ZJL 7069487 ENCODE Processing Pipeline b61f8701b5f98bac19965b927a3da8d4 https://www.encodeproject.org/files/ENCFF279NYK/@@download/ENCFF279NYK.bed.gz hg19 released ENCFF881NRM bed narrowPeak peaks ENCSR246MLJ ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens ZFX-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF761NWZ, ENCFF969MDP 7146794 ENCODE Processing Pipeline 0a9ec32727674760156f92ccc26d8b0e https://www.encodeproject.org/files/ENCFF881NRM/@@download/ENCFF881NRM.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF641DSK bed narrowPeak peaks ENCSR730TBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2017-06-07 ENCODE 1 ENCFF172XZA, ENCFF821WQW, ENCFF843IXX 7016527 ENCODE Processing Pipeline dcff0e1646822b73b232b31bdb15533e https://www.encodeproject.org/files/ENCFF641DSK/@@download/ENCFF641DSK.bed.gz hg19 released ENCFF858GTB bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human DNA False 2018-01-31 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 7008531 ENCODE Processing Pipeline c84638b834a4dfdbe88ee45d048f0ae4 https://www.encodeproject.org/files/ENCFF858GTB/@@download/ENCFF858GTB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF645DIC bed narrowPeak peaks ENCSR156UQO ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF447SCU, ENCFF656GUQ 6147395 ENCODE Processing Pipeline 8931f4895282e9c4a0c3dfe675a2ce9f https://www.encodeproject.org/files/ENCFF645DIC/@@download/ENCFF645DIC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF601WVR bed narrowPeak peaks ENCSR725VFL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA False 2017-06-07 ENCODE 1 ENCFF455LNX, ENCFF901CND 5571610 ENCODE Processing Pipeline b3900061f42ddea7742208c0ace9f16a https://www.encodeproject.org/files/ENCFF601WVR/@@download/ENCFF601WVR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF649PUW bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human DNA False 2017-05-17 ENCODE 1 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV 6116974 ENCODE Processing Pipeline 547bd70b8c068f6f139acc80b31b39da https://www.encodeproject.org/files/ENCFF649PUW/@@download/ENCFF649PUW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF467LRK bed narrowPeak peaks ENCSR699YFX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CLOCK-human DNA False 2018-01-26 ENCODE 1 ENCFF046FQA, ENCFF447KVS, ENCFF823USR 5976838 ENCODE Processing Pipeline 1be7a7769b255c27e966f1023c1e11cd https://www.encodeproject.org/files/ENCFF467LRK/@@download/ENCFF467LRK.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF084ORS bed narrowPeak peaks ENCSR516VQK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF174-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF749IJR 7112602 ENCODE Processing Pipeline 87bb642733e4f3fd7106a79818fbb3ce https://www.encodeproject.org/files/ENCFF084ORS/@@download/ENCFF084ORS.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF118EXB bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human DNA False 2016-06-13 ENCODE 1 ENCFF831FLE, ENCFF938KSJ 6685960 ENCODE Processing Pipeline 80b3bb1da20547a692d75886b0ce8f51 https://www.encodeproject.org/files/ENCFF118EXB/@@download/ENCFF118EXB.bed.gz hg19 released missing genetic modification characterization ENCFF218RDF bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA 6693826 ENCODE Processing Pipeline c2da8aa63a5dc6c33fc1f4bf1f310dd1 https://www.encodeproject.org/files/ENCFF218RDF/@@download/ENCFF218RDF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF377KNC bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human DNA False 2016-03-02 ENCODE 1 ENCFF496ANK, ENCFF845UEU 6391584 ENCODE Processing Pipeline 8c8e547d257945af136b6f2be70dec7e https://www.encodeproject.org/files/ENCFF377KNC/@@download/ENCFF377KNC.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF586MTZ bed narrowPeak peaks ENCSR854ORP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF350-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF150TKS, ENCFF182WHU 7298479 ENCODE Processing Pipeline 7961a86248fb5d4b3ef70953b24e212b https://www.encodeproject.org/files/ENCFF586MTZ/@@download/ENCFF586MTZ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF372LVB bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF619ONV 5996883 ENCODE Processing Pipeline 8fb7495ff05c9be22573c84ca5d99b42 https://www.encodeproject.org/files/ENCFF372LVB/@@download/ENCFF372LVB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF119DBB bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human DNA False 2016-03-02 ENCODE 1 ENCFF563OVT, ENCFF708ZXK 5808722 ENCODE Processing Pipeline 61b7ec4a83f998815e2e8b035034a85c https://www.encodeproject.org/files/ENCFF119DBB/@@download/ENCFF119DBB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF930VYW bed narrowPeak peaks ENCSR315NAC ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF323QMI, ENCFF540UGI, ENCFF854RGJ 7094127 ENCODE Processing Pipeline 08c0ae92d291e5e5105db1a42cd2f62d https://www.encodeproject.org/files/ENCFF930VYW/@@download/ENCFF930VYW.bed.gz hg19 released mild to moderate bottlenecking ENCFF174XDP bed narrowPeak peaks ENCSR414SWG ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF735RKK, ENCFF936KYO 6794263 ENCODE Processing Pipeline 5ecaf7343b1747ee9c455e9d312834af https://www.encodeproject.org/files/ENCFF174XDP/@@download/ENCFF174XDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF362LIP bed narrowPeak peaks ENCSR578CXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF644-human DNA False 2016-11-08 ENCODE 1 ENCFF019FLT, ENCFF203ABR 6115184 ENCODE Processing Pipeline 3fce1cce4b4989ec0e2c354bbd886e4b https://www.encodeproject.org/files/ENCFF362LIP/@@download/ENCFF362LIP.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF033FPH bed narrowPeak peaks ENCSR616WEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HBP1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF431UUS 5772340 ENCODE Processing Pipeline 39683ebee60031adbe311d028e998ee2 https://www.encodeproject.org/files/ENCFF033FPH/@@download/ENCFF033FPH.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF437EHR bed narrowPeak peaks ENCSR503GVO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens ZFX-human DNA False 2017-09-07 ENCODE 1 ENCFF856NHW, ENCFF939HKH, ENCFF959SRT 7173496 ENCODE Processing Pipeline 31d7c7670f8a008fd471db75b400eb57 https://www.encodeproject.org/files/ENCFF437EHR/@@download/ENCFF437EHR.bed.gz hg19 released NTR biosample ENCFF361FQK bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF454ZDW 5521548 ENCODE Processing Pipeline 546f0aed9f7d2c4d9afeb14cb1c1159f https://www.encodeproject.org/files/ENCFF361FQK/@@download/ENCFF361FQK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF874IMP bed narrowPeak peaks ENCSR839XZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF500GPO, ENCFF787RYL, ENCFF991WDT 5824274 ENCODE Processing Pipeline 6027065cb694432f59cc9542acf08c01 https://www.encodeproject.org/files/ENCFF874IMP/@@download/ENCFF874IMP.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF508MRO bed narrowPeak peaks ENCSR501DKS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF7-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF720HIA, ENCFF943IIV, ENCFF991WDT 5612436 ENCODE Processing Pipeline 9873663b99886607e58e6da699e5d349 https://www.encodeproject.org/files/ENCFF508MRO/@@download/ENCFF508MRO.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF328JKG bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human DNA False 2016-03-02 ENCODE 1 ENCFF678WSG, ENCFF847WWC 5957104 ENCODE Processing Pipeline 6e62a8695452b07cd3c97d0583220ac3 https://www.encodeproject.org/files/ENCFF328JKG/@@download/ENCFF328JKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF784XMU bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human DNA False 2017-09-26 ENCODE 1 ENCFF160VXC, ENCFF226SMC 6488413 ENCODE Processing Pipeline 09e5fc32e677c4cee92b4bf569370a99 https://www.encodeproject.org/files/ENCFF784XMU/@@download/ENCFF784XMU.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity ENCFF140CQS bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human DNA False 2016-08-24 ENCODE 1 ENCFF563IAT, ENCFF653FYP 6409945 ENCODE Processing Pipeline 371379ba667695673065ea92fcceb6d7 https://www.encodeproject.org/files/ENCFF140CQS/@@download/ENCFF140CQS.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF851RZA bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human DNA False 2016-06-13 ENCODE 1 ENCFF075EEP, ENCFF310DOA 6682206 ENCODE Processing Pipeline 714549be6e829c4e2ec9fc57bfc6d884 https://www.encodeproject.org/files/ENCFF851RZA/@@download/ENCFF851RZA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF633YFP bed narrowPeak peaks ENCSR919CZU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-EGR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF811OMJ 6522018 ENCODE Processing Pipeline ca4e17a6db1f8cafafc7cdb043262b3b https://www.encodeproject.org/files/ENCFF633YFP/@@download/ENCFF633YFP.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF421MGV bed narrowPeak peaks ENCSR125DNC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF394-human DNA formaldehyde False 2016-10-31 ENCODE 1 ENCFF182WHU, ENCFF640XRH 7223668 ENCODE Processing Pipeline 1c5f9d796e64cbc7cb325817acb1f606 https://www.encodeproject.org/files/ENCFF421MGV/@@download/ENCFF421MGV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF927LSX bed narrowPeak peaks ENCSR382WLL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELK1-human DNA False 2016-02-16 ENCODE 1 ENCFF157ZBY, ENCFF583FAG 5499758 ENCODE Processing Pipeline 05bea0f974f9c2d39c18beffcf55f243 https://www.encodeproject.org/files/ENCFF927LSX/@@download/ENCFF927LSX.bed.gz hg19 released borderline replicate concordance duplicate lane review ENCFF856ZCX bed narrowPeak peaks ENCSR186NVR ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens CTCF-human DNA False 2017-06-23 ENCODE 1 ENCFF492MLX, ENCFF653KEU 6434619 ENCODE Processing Pipeline 2991024c9bb5f14ee8b65fdc0d7278af https://www.encodeproject.org/files/ENCFF856ZCX/@@download/ENCFF856ZCX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF246HSO bed narrowPeak peaks ENCSR925GDS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF034SMD, ENCFF106RXX 6662756 ENCODE Processing Pipeline 75914ddd368c4257b7d42101e337ff94 https://www.encodeproject.org/files/ENCFF246HSO/@@download/ENCFF246HSO.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF817OVB bed narrowPeak peaks ENCSR906UPC ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF515DIW 6077512 ENCODE Processing Pipeline 2fede9d02cf0ca5fc60ea7dbc30148c1 https://www.encodeproject.org/files/ENCFF817OVB/@@download/ENCFF817OVB.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF690XXK bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF818HIH 5047502 ENCODE Processing Pipeline fa771e766c74b2ac2c02538825850bed https://www.encodeproject.org/files/ENCFF690XXK/@@download/ENCFF690XXK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF076OEB bed narrowPeak peaks ENCSR959UQA ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF807EBL, ENCFF882XMI 7103377 ENCODE Processing Pipeline f3c6bfeb93ee4f0d076ce1d1802a13c5 https://www.encodeproject.org/files/ENCFF076OEB/@@download/ENCFF076OEB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF035ILO bed narrowPeak peaks ENCSR759BDG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-BCL6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF511GQK 6746278 ENCODE Processing Pipeline cc33b5ab9cc746d3349b6bc34bb21e0d https://www.encodeproject.org/files/ENCFF035ILO/@@download/ENCFF035ILO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF739FWZ bed narrowPeak peaks ENCSR360BLQ ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF677JZD 6349292 ENCODE Processing Pipeline 22d0680342d65f727917705d65ed0e92 https://www.encodeproject.org/files/ENCFF739FWZ/@@download/ENCFF739FWZ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF849XOM bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human DNA False 2017-02-13 ENCODE 1 ENCFF127KUO, ENCFF432JII 7306581 ENCODE Processing Pipeline 569991f0b6311ded2e5751c48f9e24e0 https://www.encodeproject.org/files/ENCFF849XOM/@@download/ENCFF849XOM.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization ENCFF392WIW bed narrowPeak peaks ENCSR130VQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PPARG-human DNA False 2016-11-08 ENCODE 1 ENCFF177JUU, ENCFF203ABR 6731245 ENCODE Processing Pipeline d3de302c8bbffed33c919d7b767d4963 https://www.encodeproject.org/files/ENCFF392WIW/@@download/ENCFF392WIW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF469YOH bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human DNA False 2016-06-13 ENCODE 1 ENCFF736LGI, ENCFF812HBY 7059386 ENCODE Processing Pipeline f50f1f3780c9198b3c3454752863a295 https://www.encodeproject.org/files/ENCFF469YOH/@@download/ENCFF469YOH.bed.gz hg19 released missing genetic modification characterization ENCFF470QLV bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF938LDN 6177835 ENCODE Processing Pipeline 9736c4051e5dd11f89ca06ed8d8caf4f https://www.encodeproject.org/files/ENCFF470QLV/@@download/ENCFF470QLV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF495TAN bed narrowPeak peaks ENCSR923WJS ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF446NOX 6487954 ENCODE Processing Pipeline 423ecba64b2025257934b472c14c76ad https://www.encodeproject.org/files/ENCFF495TAN/@@download/ENCFF495TAN.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF946CXU bed narrowPeak peaks ENCSR400WEK ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF468VJA, ENCFF796XBF 7054765 ENCODE Processing Pipeline 3ccc70b6aafcb62b9d5bef44f8907ddd https://www.encodeproject.org/files/ENCFF946CXU/@@download/ENCFF946CXU.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF422ZGT bed narrowPeak peaks ENCSR115PIK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIER2-human DNA False 2016-11-08 ENCODE 1 ENCFF020TIU, ENCFF203ABR 6804452 ENCODE Processing Pipeline 5d6e148c590700b78dbefa0828444121 https://www.encodeproject.org/files/ENCFF422ZGT/@@download/ENCFF422ZGT.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF654MRF bed narrowPeak peaks ENCSR403USE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF650TKO, ENCFF924YJA 5953485 ENCODE Processing Pipeline 376cf1563883a5732e3cbc0617dff618 https://www.encodeproject.org/files/ENCFF654MRF/@@download/ENCFF654MRF.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF453VKQ bed narrowPeak peaks ENCSR966PJY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MIXL1-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF497WGL 6811325 ENCODE Processing Pipeline 594210d3e8e4ea96bd5998be037332c4 https://www.encodeproject.org/files/ENCFF453VKQ/@@download/ENCFF453VKQ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF544WYW bed narrowPeak peaks ENCSR210HBN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-IKZF5-human DNA False 2018-02-12 ENCODE 1 ENCFF459JPC 6453526 ENCODE Processing Pipeline 0e5907b1ed6d2c97762f3244faa42e7c https://www.encodeproject.org/files/ENCFF544WYW/@@download/ENCFF544WYW.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF571CAU bed narrowPeak peaks ENCSR088VUG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF150JKN 5928073 ENCODE Processing Pipeline f43861ef67f10c5c21e74e201183cecb https://www.encodeproject.org/files/ENCFF571CAU/@@download/ENCFF571CAU.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF256UTK bed narrowPeak peaks ENCSR745VSQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-GMEB2-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF616BTZ 6125036 ENCODE Processing Pipeline f2736f9429eb78e9bc837e77e6f79815 https://www.encodeproject.org/files/ENCFF256UTK/@@download/ENCFF256UTK.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF402UYK bed narrowPeak peaks ENCSR442CIF ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF475DIE, ENCFF836OQZ 6636011 ENCODE Processing Pipeline f3b587fb395d44961524030474be4da7 https://www.encodeproject.org/files/ENCFF402UYK/@@download/ENCFF402UYK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO ENCFF297ZIE bed narrowPeak peaks ENCSR000BQB ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF095RWQ, ENCFF234MAA 5357565 ENCODE Processing Pipeline 9b20dfb24dee94dbd714fca7f7b103d1 https://www.encodeproject.org/files/ENCFF297ZIE/@@download/ENCFF297ZIE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF228GBX bed narrowPeak peaks ENCSR000EED ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF669VIL 4603907 ENCODE Processing Pipeline 6b29761c533a6ca6fd92ee01b41df67d https://www.encodeproject.org/files/ENCFF228GBX/@@download/ENCFF228GBX.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF948OFI bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF222PVF, ENCFF477SGV 5295909 ENCODE Processing Pipeline edab1ed4566b4314cc23b829e56f8d33 https://www.encodeproject.org/files/ENCFF948OFI/@@download/ENCFF948OFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF637JPV bed narrowPeak peaks ENCSR025ZZA ChIP-seq UBERON:0036149 suprapubic skin tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF122KYV, ENCFF552ZVE 6165335 ENCODE Processing Pipeline 09aec9b9031d1bab2449b2aad218eccc https://www.encodeproject.org/files/ENCFF637JPV/@@download/ENCFF637JPV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF767XFY bed narrowPeak peaks ENCSR432GAO ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF541PDU, ENCFF590SXF 6892463 ENCODE Processing Pipeline f29bc166ba42a2cfaa93484b384783cb https://www.encodeproject.org/files/ENCFF767XFY/@@download/ENCFF767XFY.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF299CAD bed narrowPeak peaks ENCSR033NHF ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF719ANC, ENCFF846EWR 7029538 ENCODE Processing Pipeline 11d2e66b4052538a0d4ca40dc2a967ba https://www.encodeproject.org/files/ENCFF299CAD/@@download/ENCFF299CAD.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF591FQI bed narrowPeak peaks ENCSR430JGJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THRB-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF397BSD 6105818 ENCODE Processing Pipeline 2f6fe382a6ba4a993806f34e06efcff8 https://www.encodeproject.org/files/ENCFF591FQI/@@download/ENCFF591FQI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF360QSJ bed narrowPeak peaks ENCSR757EKM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KLF6-human DNA False 2016-11-08 ENCODE 1 ENCFF126EYL, ENCFF203ABR 6751382 ENCODE Processing Pipeline f02e9930599d8201b2a66cc5243ca53f https://www.encodeproject.org/files/ENCFF360QSJ/@@download/ENCFF360QSJ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF671OVE bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-01-27 ENCODE 1 ENCFF117LCX, ENCFF160VXC 7000743 ENCODE Processing Pipeline 6128a1faa54737510c43c78ce33a8341 https://www.encodeproject.org/files/ENCFF671OVE/@@download/ENCFF671OVE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF590LRH bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human DNA False 2016-06-13 ENCODE 1 ENCFF479XRX, ENCFF503YHD 7126045 ENCODE Processing Pipeline c4dd620d8cb73921a71e311ff1644875 https://www.encodeproject.org/files/ENCFF590LRH/@@download/ENCFF590LRH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF040LOQ bed narrowPeak peaks ENCSR828NCB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF699MBA, ENCFF901CND 6545854 ENCODE Processing Pipeline e0d3f12c791753d1349de45edbfde9f7 https://www.encodeproject.org/files/ENCFF040LOQ/@@download/ENCFF040LOQ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF676RSO bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human DNA False 2016-06-13 ENCODE 1 ENCFF744LSD, ENCFF826XVE 7060269 ENCODE Processing Pipeline ed76e1e7d3291d5c21336cc02f9ee3e3 https://www.encodeproject.org/files/ENCFF676RSO/@@download/ENCFF676RSO.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF943NIH bed narrowPeak peaks ENCSR509FWH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens DPF2-human DNA False 2017-05-17 ENCODE 1 ENCFF437AZE, ENCFF901CND 6948107 ENCODE Processing Pipeline f702ceabbaa2e142282da390c2da8676 https://www.encodeproject.org/files/ENCFF943NIH/@@download/ENCFF943NIH.bed.gz hg19 released mild to moderate bottlenecking ENCFF789TTE bed narrowPeak peaks ENCSR924GRG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB49-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF911YIA 6405804 ENCODE Processing Pipeline 9c9ad676ed43342eab534afd4da9f94b https://www.encodeproject.org/files/ENCFF789TTE/@@download/ENCFF789TTE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF048ORT bed narrowPeak peaks ENCSR514EOE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF191IPI, ENCFF705NOL 6699107 ENCODE Processing Pipeline 4b9c3489eb810f59a073ef78246d7dcb https://www.encodeproject.org/files/ENCFF048ORT/@@download/ENCFF048ORT.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF472SCD bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human DNA False 2016-06-13 ENCODE 1 ENCFF243GPO, ENCFF538HUN 6005884 ENCODE Processing Pipeline 2bab94bc6306c9d1f5743617b8c62493 https://www.encodeproject.org/files/ENCFF472SCD/@@download/ENCFF472SCD.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF865JLD bed narrowPeak peaks ENCSR894QWM ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269HDS, ENCFF824DBS 6347524 ENCODE Processing Pipeline 93c75697dd790cd31be052533d3dbd00 https://www.encodeproject.org/files/ENCFF865JLD/@@download/ENCFF865JLD.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF491EBX bed narrowPeak peaks ENCSR502NRF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF367GNZ, ENCFF447KVS, ENCFF823USR 6750514 ENCODE Processing Pipeline f4b3cc54b6e1478e33664fd3ebb609ec https://www.encodeproject.org/files/ENCFF491EBX/@@download/ENCFF491EBX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF847LNA bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human DNA False 2016-06-13 ENCODE 1 ENCFF359SKD, ENCFF434TTY 7055585 ENCODE Processing Pipeline 0db6cf378fe8914bdee0eeae2d02fc08 https://www.encodeproject.org/files/ENCFF847LNA/@@download/ENCFF847LNA.bed.gz hg19 released missing genetic modification characterization ENCFF701BYF bed narrowPeak peaks ENCSR896UBV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REST-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF975JDZ 6942811 ENCODE Processing Pipeline ee3a30c5a1a85dde5914b9d2b6847b97 https://www.encodeproject.org/files/ENCFF701BYF/@@download/ENCFF701BYF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF434RXV bed narrowPeak peaks ENCSR283MWQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF133-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF041AGD 6838323 ENCODE Processing Pipeline fce1e5a9c986ed355bd5e38a8afd54cd https://www.encodeproject.org/files/ENCFF434RXV/@@download/ENCFF434RXV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF866TGY bed narrowPeak peaks ENCSR803GYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-HIC1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF654MCA 7136400 ENCODE Processing Pipeline f45bc67528629894e7c39156e6c3bf93 https://www.encodeproject.org/files/ENCFF866TGY/@@download/ENCFF866TGY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF311GKF bed narrowPeak peaks ENCSR096KPA ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-03-04 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF692DPL 5869158 ENCODE Processing Pipeline 6beb95c44ba95c65859c201055626a31 https://www.encodeproject.org/files/ENCFF311GKF/@@download/ENCFF311GKF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth ENCFF285WPP bed narrowPeak peaks ENCSR875PEI ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TRIM22-human DNA False 2017-11-14 ENCODE 1 ENCFF447KVS, ENCFF475NYJ, ENCFF823USR 6829536 ENCODE Processing Pipeline a8871d5e0385670514ab856dd8898fdb https://www.encodeproject.org/files/ENCFF285WPP/@@download/ENCFF285WPP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF657OOK bed narrowPeak peaks ENCSR552XSN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MLLT1-human DNA False 2016-08-24 ENCODE 1 ENCFF076TDR, ENCFF941TZZ 6949366 ENCODE Processing Pipeline 0b82578fd9aa8ce31b245ccb03ab8274 https://www.encodeproject.org/files/ENCFF657OOK/@@download/ENCFF657OOK.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF448WRI bed narrowPeak peaks ENCSR703TNG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 3xFLAG-RAD21-human DNA False 2016-06-28 ENCODE 1 ENCFF078CCC, ENCFF717AFR, ENCFF847YWA 5886975 ENCODE Processing Pipeline da88e7d71d900b6a270281512bd42a68 https://www.encodeproject.org/files/ENCFF448WRI/@@download/ENCFF448WRI.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF770CIC bed narrowPeak peaks ENCSR000EEG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF240KTH 4761321 ENCODE Processing Pipeline 8dbfb82d2a2a6c762ceab2ccaeff03c1 https://www.encodeproject.org/files/ENCFF770CIC/@@download/ENCFF770CIC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF624BVW bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ATF1-human DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF447TYF 5039056 ENCODE Processing Pipeline e1727509e123689203fbeea3fbb815b8 https://www.encodeproject.org/files/ENCFF624BVW/@@download/ENCFF624BVW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF362URR bed narrowPeak peaks ENCSR324LTM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OSR2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF097LQF 7000552 ENCODE Processing Pipeline 789e71b06e981cee6c0a7e10c28f76ff https://www.encodeproject.org/files/ENCFF362URR/@@download/ENCFF362URR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF424FFU bed narrowPeak peaks ENCSR357QJR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF466IFZ 6946012 ENCODE Processing Pipeline 0e1307b28822a84c668c0b618cc21bc9 https://www.encodeproject.org/files/ENCFF424FFU/@@download/ENCFF424FFU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF366NSR bed narrowPeak peaks ENCSR654ORQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SLC30A9-human DNA False 2016-11-08 ENCODE 1 ENCFF195PDT, ENCFF203ABR 6959474 ENCODE Processing Pipeline 911257a38ceea9aafd1e0ebc01945d69 https://www.encodeproject.org/files/ENCFF366NSR/@@download/ENCFF366NSR.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF982ZRX bed narrowPeak peaks ENCSR091BOQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SUZ12-human DNA False 2018-01-17 ENCODE 1 ENCFF468GSD, ENCFF602SNK 5550435 ENCODE Processing Pipeline 5daee905a3ddafa7c63f59aef3bca91a https://www.encodeproject.org/files/ENCFF982ZRX/@@download/ENCFF982ZRX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF727PSQ bed narrowPeak peaks ENCSR278JQG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens IKZF1-human DNA False 2016-06-14 ENCODE 1 ENCFF449NNE, ENCFF486FNI 6123997 ENCODE Processing Pipeline 5c8a819ec0816afec60033107aae642a https://www.encodeproject.org/files/ENCFF727PSQ/@@download/ENCFF727PSQ.bed.gz hg19 released borderline replicate concordance ENCFF107ZNB bed narrowPeak peaks ENCSR000BGO ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF452GJT 6516602 ENCODE Processing Pipeline 3d124dcf08a60fb0a2030cbc4af0b7a4 https://www.encodeproject.org/files/ENCFF107ZNB/@@download/ENCFF107ZNB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF512ZRB bed narrowPeak peaks ENCSR396SKI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF331-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF068GSY 6369099 ENCODE Processing Pipeline 7fb146e35dab7d9b4c74605720295384 https://www.encodeproject.org/files/ENCFF512ZRB/@@download/ENCFF512ZRB.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF281XTE bed narrowPeak peaks ENCSR571PDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SSRP1-human DNA False 2016-06-14 ENCODE 1 ENCFF005ZLD, ENCFF023YTY 6839297 ENCODE Processing Pipeline 475f78b28d4b220cf650b44a21a4dacb https://www.encodeproject.org/files/ENCFF281XTE/@@download/ENCFF281XTE.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF001XPL bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HHN 546105 John Stamatoyannopoulos, UW 05c13c8ad1f8447216514287c9a8cbf9 https://www.encodeproject.org/files/ENCFF001XPL/@@download/ENCFF001XPL.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF303UAB bed narrowPeak peaks ENCSR000DRZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF607GOG, ENCFF892TNJ 1748719 ENCODE Processing Pipeline b63e8c0ee9f5f7eb5feb22f98c885a56 https://www.encodeproject.org/files/ENCFF303UAB/@@download/ENCFF303UAB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF590AZG bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF493QSH, ENCFF923FKY 4878142 ENCODE Processing Pipeline 0107c937fd98ed8c82df77d05100ce01 https://www.encodeproject.org/files/ENCFF590AZG/@@download/ENCFF590AZG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF714MAA bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human DNA False 2017-06-29 ENCODE 1 ENCFF014SFP, ENCFF834TUP 6450400 ENCODE Processing Pipeline c9b8e7a77956632bae4156d7541e7c46 https://www.encodeproject.org/files/ENCFF714MAA/@@download/ENCFF714MAA.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF592XOZ bed narrowPeak peaks ENCSR396SOH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZNF792-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF812AFI 7091873 ENCODE Processing Pipeline 62bd68e7d446973230c3f75a8ac39eb2 https://www.encodeproject.org/files/ENCFF592XOZ/@@download/ENCFF592XOZ.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF684ZXB bed narrowPeak peaks ENCSR242BGR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF770-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF361UHD 6997592 ENCODE Processing Pipeline 3f68ecf5dec36d3a911e45c00c8dfb47 https://www.encodeproject.org/files/ENCFF684ZXB/@@download/ENCFF684ZXB.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF354WRC bed narrowPeak peaks ENCSR586BRJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF433-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF651TWV 6180696 ENCODE Processing Pipeline 88d328e3fa2d9d7e8efa8a115fdf0017 https://www.encodeproject.org/files/ENCFF354WRC/@@download/ENCFF354WRC.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF697TMT bed narrowPeak peaks ENCSR389BLX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GATAD2B-human DNA False 2016-10-26 ENCODE 1 ENCFF326PVE, ENCFF447KVS, ENCFF823USR 6795165 ENCODE Processing Pipeline 90199c725555873d557f11cf1b75fe36 https://www.encodeproject.org/files/ENCFF697TMT/@@download/ENCFF697TMT.bed.gz hg19 released ENCFF140XPK bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703ULA, ENCFF710NTS 5254759 ENCODE Processing Pipeline 5da407a55ac8e67282768fa2dafa3448 https://www.encodeproject.org/files/ENCFF140XPK/@@download/ENCFF140XPK.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF324MHP bed narrowPeak peaks ENCSR728MWW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZIC2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF094HJZ 7121133 ENCODE Processing Pipeline e509404f3266c0a6f93525f65f6a0644 https://www.encodeproject.org/files/ENCFF324MHP/@@download/ENCFF324MHP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF285LKH bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human DNA False 2016-09-26 ENCODE 1 ENCFF160VXC, ENCFF327GHK, ENCFF834TUP 6837520 ENCODE Processing Pipeline 79ea0c0bf9dea9f99781d0a485899deb https://www.encodeproject.org/files/ENCFF285LKH/@@download/ENCFF285LKH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF009PGQ bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA False 2016-06-14 ENCODE 1 ENCFF193XPY, ENCFF335IPE 5075484 ENCODE Processing Pipeline f52779d780056f5dbc75289ced0e3718 https://www.encodeproject.org/files/ENCFF009PGQ/@@download/ENCFF009PGQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF072ERX bed narrowPeak peaks ENCSR240XWM ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens LEF1-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF761PRG, ENCFF772FBN 6361672 ENCODE Processing Pipeline a91cd3e86e942cc12b8d9c2ee427e2a0 https://www.encodeproject.org/files/ENCFF072ERX/@@download/ENCFF072ERX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF736SWB bed narrowPeak peaks ENCSR591EBL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NBN-human DNA False 2016-09-20 ENCODE 1 ENCFF187GJJ, ENCFF447KVS, ENCFF823USR 6752970 ENCODE Processing Pipeline 58930d20f2e017b4e6d25187bb6a6797 https://www.encodeproject.org/files/ENCFF736SWB/@@download/ENCFF736SWB.bed.gz hg19 released file validation error mismatched file status ENCFF803HUJ bed narrowPeak peaks ENCSR000DLK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF325QRE 1318856 ENCODE Processing Pipeline 8f5bf2f5b92b134ef4645a547364f639 https://www.encodeproject.org/files/ENCFF803HUJ/@@download/ENCFF803HUJ.bed.gz hg19 released low read length insufficient read depth control extremely low read depth ENCFF131TVY bed narrowPeak peaks ENCSR341VYI ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2phosphoT487-human DNA False 2018-02-24 ENCODE 1 ENCFF019LID, ENCFF812MYK 5502216 ENCODE Processing Pipeline b4632ee0e74a03f71d25d7e8005072d9 https://www.encodeproject.org/files/ENCFF131TVY/@@download/ENCFF131TVY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment, severe bottlenecking ENCFF296UIC bed narrowPeak peaks ENCSR691TXI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF610-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF746OBW 7048382 ENCODE Processing Pipeline 4053ff146526175ca8edd55dc39b2c67 https://www.encodeproject.org/files/ENCFF296UIC/@@download/ENCFF296UIC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF402VML bed narrowPeak peaks ENCSR441UBA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-RBAK-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF170JGP 6522220 ENCODE Processing Pipeline dc7aaa90d97e6025a8ddaa70a41e8e25 https://www.encodeproject.org/files/ENCFF402VML/@@download/ENCFF402VML.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF426WFT bed narrowPeak peaks ENCSR966PJJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-WT1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF750PRY 6858851 ENCODE Processing Pipeline 4315db5cfb8218bfcb764a3ecd823bfa https://www.encodeproject.org/files/ENCFF426WFT/@@download/ENCFF426WFT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF041EID bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human DNA False 2016-08-24 ENCODE 1 ENCFF335IPE, ENCFF708LOC 3776183 ENCODE Processing Pipeline fef6dda7aa2bb57a75863df1649746b9 https://www.encodeproject.org/files/ENCFF041EID/@@download/ENCFF041EID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF420XDI bed narrowPeak peaks ENCSR522LDJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens HDGF-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF772FBN, ENCFF950TOD 6667865 ENCODE Processing Pipeline 9ec7ca1566919e30b2841a7725753218 https://www.encodeproject.org/files/ENCFF420XDI/@@download/ENCFF420XDI.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF893PID bed narrowPeak peaks ENCSR508LMH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ASH2L-human DNA False 2017-11-19 ENCODE 1 ENCFF165PBN, ENCFF557TAR, ENCFF705NOL 7198060 ENCODE Processing Pipeline 927d0f4b8f7a84d63abe5f7fc78f43de https://www.encodeproject.org/files/ENCFF893PID/@@download/ENCFF893PID.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths experiment not submitted to GEO insufficient read length ENCFF215LEX bed narrowPeak peaks ENCSR555PBN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAFK-human DNA False 2014-07-07 ENCODE 1 ENCFF086KKL, ENCFF583FAG 5904944 ENCODE Processing Pipeline 3b1deac1417cad3a3bbfa2e30cf99293 https://www.encodeproject.org/files/ENCFF215LEX/@@download/ENCFF215LEX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF949JDW bed narrowPeak peaks ENCSR504VDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF654-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF903YHB 6331062 ENCODE Processing Pipeline 6bbf0942aeb18812811949afa78d16cd https://www.encodeproject.org/files/ENCFF949JDW/@@download/ENCFF949JDW.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF458NNN bed narrowPeak peaks ENCSR468LUO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIN3A-human DNA False 2016-02-16 ENCODE 1 ENCFF433CVZ, ENCFF583FAG 6781894 ENCODE Processing Pipeline 3cea4ff84cc248007568d273d01a08cf https://www.encodeproject.org/files/ENCFF458NNN/@@download/ENCFF458NNN.bed.gz hg19 released ENCFF378ZAD bed narrowPeak peaks ENCSR223TAV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM10-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF424HAO 6982223 ENCODE Processing Pipeline 2c8b720c103dd328cca4e49abd98e687 https://www.encodeproject.org/files/ENCFF378ZAD/@@download/ENCFF378ZAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF369GTZ bed narrowPeak peaks ENCSR683CSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF207-human DNA False 2016-09-20 ENCODE 1 ENCFF172XZA, ENCFF843IXX, ENCFF849SYR 7087951 ENCODE Processing Pipeline ff4d1db30a92eec13493cd4d147e5046 https://www.encodeproject.org/files/ENCFF369GTZ/@@download/ENCFF369GTZ.bed.gz hg19 released antibody characterized with exemption ENCFF464FVG bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human DNA False 2016-02-16 ENCODE 1 ENCFF242FHJ, ENCFF891JES 7036651 ENCODE Processing Pipeline ccdcaf9293bb0c0d8e5b0cd30f95ece0 https://www.encodeproject.org/files/ENCFF464FVG/@@download/ENCFF464FVG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF221YZK bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA False 2016-06-14 ENCODE 1 ENCFF530XAQ, ENCFF581ZJL 6885176 ENCODE Processing Pipeline c1e525a49f7412ded1a318d271cfeeda https://www.encodeproject.org/files/ENCFF221YZK/@@download/ENCFF221YZK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF867FAH bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA False 2016-02-16 ENCODE 1 ENCFF252CHQ, ENCFF301KAZ 6432766 ENCODE Processing Pipeline 9f722049e31e1819e6720a49090a9aea https://www.encodeproject.org/files/ENCFF867FAH/@@download/ENCFF867FAH.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF509UMD bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF608THC 7038268 ENCODE Processing Pipeline 5859ca935cf7cdbc7c84003370d4dc9e https://www.encodeproject.org/files/ENCFF509UMD/@@download/ENCFF509UMD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF035JZF bed narrowPeak peaks ENCSR103GAK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF175-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF060NHQ 6304742 ENCODE Processing Pipeline 7431ea9ad18110b56a5e7431e0963373 https://www.encodeproject.org/files/ENCFF035JZF/@@download/ENCFF035JZF.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF616MLP bed narrowPeak peaks ENCSR365GRX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP37-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF365IHN 7179821 ENCODE Processing Pipeline ad4653018a3338cafe37dcea16537b30 https://www.encodeproject.org/files/ENCFF616MLP/@@download/ENCFF616MLP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF793DXA bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 3951414 ENCODE Processing Pipeline 948b2edbfdd80d7b3c2709d653894ce6 https://www.encodeproject.org/files/ENCFF793DXA/@@download/ENCFF793DXA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF880ZWB bed narrowPeak peaks ENCSR620YNB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KAT2B-human DNA False 2014-07-07 ENCODE 1 ENCFF264RGM, ENCFF863VMN 4096610 ENCODE Processing Pipeline b8760cfa57d2e17ff9c368c63c07f04b https://www.encodeproject.org/files/ENCFF880ZWB/@@download/ENCFF880ZWB.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF464TJB bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF332BKR 4994184 ENCODE Processing Pipeline 9aa45d482c71c8760087f0b0d9a92608 https://www.encodeproject.org/files/ENCFF464TJB/@@download/ENCFF464TJB.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF723TIO bed narrowPeak peaks ENCSR431FOF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CHD4-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF275KSQ, ENCFF705NOL 7252453 ENCODE Processing Pipeline a73318bcccb17d28b68193eee7dbf8f6 https://www.encodeproject.org/files/ENCFF723TIO/@@download/ENCFF723TIO.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF154HFX bed narrowPeak peaks ENCSR462FWS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF101-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF924QCM 6582278 ENCODE Processing Pipeline 6282ac8d5e8da6d964ce5eca79f25d7e https://www.encodeproject.org/files/ENCFF154HFX/@@download/ENCFF154HFX.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF795PEX bed narrowPeak peaks ENCSR874AFU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF648SPM, ENCFF901CND 6957758 ENCODE Processing Pipeline b0c8e8e73bfd433eeb683f077d853aca https://www.encodeproject.org/files/ENCFF795PEX/@@download/ENCFF795PEX.bed.gz hg19 released mild to moderate bottlenecking ENCFF116JZW bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF686NWE 6978919 ENCODE Processing Pipeline cf5c9590a33d846f803d14df40f54a91 https://www.encodeproject.org/files/ENCFF116JZW/@@download/ENCFF116JZW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF998AMF bed narrowPeak peaks ENCSR106EBH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF366-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF122GSS, ENCFF182WHU 7234029 ENCODE Processing Pipeline 301ff7f9d5b56d5783fa01d077ccf738 https://www.encodeproject.org/files/ENCFF998AMF/@@download/ENCFF998AMF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF821KSJ bed narrowPeak peaks ENCSR419ANE ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF025ZGL, ENCFF888YHU 6191786 ENCODE Processing Pipeline 1f024425ec70161ea3fd9530da6147ad https://www.encodeproject.org/files/ENCFF821KSJ/@@download/ENCFF821KSJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF171UYN bed narrowPeak peaks ENCSR506HXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TRIM22-human DNA False 2017-01-27 ENCODE 1 ENCFF094YRM, ENCFF449NNE 6090064 ENCODE Processing Pipeline 9d56ef94bfc552c2fe7bc71c368762cb https://www.encodeproject.org/files/ENCFF171UYN/@@download/ENCFF171UYN.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF273RBL bed narrowPeak peaks ENCSR604VWJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF120PSC 6840277 ENCODE Processing Pipeline c9779adadbb60d243f16af4c16ef2c8a https://www.encodeproject.org/files/ENCFF273RBL/@@download/ENCFF273RBL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF165YKQ bed narrowPeak peaks ENCSR811JJM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF19-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF426ZNF 6318563 ENCODE Processing Pipeline fb54d91fc50abce00f8fb441bd4ffb95 https://www.encodeproject.org/files/ENCFF165YKQ/@@download/ENCFF165YKQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF265MBT bed narrowPeak peaks ENCSR604CNJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF416-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF778FZI 6589101 ENCODE Processing Pipeline 058dcd2df13899cc5555d66441c9262d https://www.encodeproject.org/files/ENCFF265MBT/@@download/ENCFF265MBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF204QGM bed narrowPeak peaks ENCSR668HOP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF580-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF764AKW 7024442 ENCODE Processing Pipeline 2aec3e27a8688056ff352ca8a9b2be99 https://www.encodeproject.org/files/ENCFF204QGM/@@download/ENCFF204QGM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF158LYC bed narrowPeak peaks ENCSR031ING ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM6A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF759GZJ 6370153 ENCODE Processing Pipeline 1757a9ae4dc34674ee942e94a6b71c98 https://www.encodeproject.org/files/ENCFF158LYC/@@download/ENCFF158LYC.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF556TCV bed narrowPeak peaks ENCSR545FXC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF459NAB 6744246 ENCODE Processing Pipeline 5c91e4ec268e116bfae760f3b6477315 https://www.encodeproject.org/files/ENCFF556TCV/@@download/ENCFF556TCV.bed.gz hg19 released antibody characterized with exemption ENCFF974FAB bed narrowPeak peaks ENCSR072LQF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF76-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF612XXN 7070245 ENCODE Processing Pipeline f8cce901b9c38431b8ccb0dd95d11611 https://www.encodeproject.org/files/ENCFF974FAB/@@download/ENCFF974FAB.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF100WYT bed narrowPeak peaks ENCSR978EQY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI2-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF129NFS 5994958 ENCODE Processing Pipeline 5e1c47ea69bd5de7545540aa01247e8d https://www.encodeproject.org/files/ENCFF100WYT/@@download/ENCFF100WYT.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF888UCO bed narrowPeak peaks ENCSR065WUF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF17-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF081WJA 6961492 ENCODE Processing Pipeline 61f41031c198568b2b3e8fbf30e51fb8 https://www.encodeproject.org/files/ENCFF888UCO/@@download/ENCFF888UCO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF218RJK bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human DNA False 2016-07-08 ENCODE 1 ENCFF483UIU, ENCFF581ZJL 6233227 ENCODE Processing Pipeline 90c9ab711eba70a009b0589ea7057131 https://www.encodeproject.org/files/ENCFF218RJK/@@download/ENCFF218RJK.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF760HAB bed narrowPeak peaks ENCSR159GFL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF518A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF213TEN 6665232 ENCODE Processing Pipeline 8cca9b38de7a61be3199d737da5dfe1d https://www.encodeproject.org/files/ENCFF760HAB/@@download/ENCFF760HAB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF083ZXX bed narrowPeak peaks ENCSR624GNZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF154PCC, ENCFF332BZZ 4775730 ENCODE Processing Pipeline 5e3ccb537871f6c3ba6b26cb0ec1d720 https://www.encodeproject.org/files/ENCFF083ZXX/@@download/ENCFF083ZXX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance sequencing runs labeled as technical replicates, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF922CFN bed narrowPeak peaks ENCSR636EYA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTBP1-human DNA False 2016-04-21 ENCODE 1 ENCFF583FAG, ENCFF678DEO 6652068 ENCODE Processing Pipeline 022c23594bf8b149ec691c1c27b42169 https://www.encodeproject.org/files/ENCFF922CFN/@@download/ENCFF922CFN.bed.gz hg19 released ENCFF316BHA bed narrowPeak peaks ENCSR854JES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF328GBF, ENCFF536AHS, ENCFF609QFO 7134554 ENCODE Processing Pipeline 8526df6af7cb66062cdd3d8ca5a983b0 https://www.encodeproject.org/files/ENCFF316BHA/@@download/ENCFF316BHA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF433ANO bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human DNA False 2016-12-05 ENCODE 1 ENCFF066EHS, ENCFF834TUP 7144829 ENCODE Processing Pipeline fe359d4ff2dce87656e7ebd6b6d138ba https://www.encodeproject.org/files/ENCFF433ANO/@@download/ENCFF433ANO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF008XTO bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF581ZJL, ENCFF862UZN 6606736 ENCODE Processing Pipeline f35483d19c4445bdeed1b505251a418e https://www.encodeproject.org/files/ENCFF008XTO/@@download/ENCFF008XTO.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF519KHN bed narrowPeak peaks ENCSR977HTH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF18-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF484PDX 6813182 ENCODE Processing Pipeline 1f325eba7f129d0e4bc625eb60333283 https://www.encodeproject.org/files/ENCFF519KHN/@@download/ENCFF519KHN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF614LFE bed narrowPeak peaks ENCSR798IJO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NR2F6-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF254QWH 6405359 ENCODE Processing Pipeline 83c4efe2348a579e7265eaca24f6529c https://www.encodeproject.org/files/ENCFF614LFE/@@download/ENCFF614LFE.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF986DDI bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human DNA False 2017-06-29 ENCODE 1 ENCFF773WIK, ENCFF834TUP 7123126 ENCODE Processing Pipeline bbb75f1080f65d0247bac28cfbadfa10 https://www.encodeproject.org/files/ENCFF986DDI/@@download/ENCFF986DDI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF066DHI bed narrowPeak peaks ENCSR776LDJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF645-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF782WSP 6823410 ENCODE Processing Pipeline 1811c322e3188c60e891d31505751615 https://www.encodeproject.org/files/ENCFF066DHI/@@download/ENCFF066DHI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF860OID bed narrowPeak peaks ENCSR418NZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF524-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF147BZB 6526661 ENCODE Processing Pipeline 91a28b0517017c1a0db6699f4f4f5f56 https://www.encodeproject.org/files/ENCFF860OID/@@download/ENCFF860OID.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF593KRH bed narrowPeak peaks ENCSR293QAR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA2-human DNA False 2016-09-20 ENCODE 1 ENCFF592WAL, ENCFF901CND, ENCFF975GPP 7255853 ENCODE Processing Pipeline 18235deea7ec222cc38f7cf3a732ed11 https://www.encodeproject.org/files/ENCFF593KRH/@@download/ENCFF593KRH.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF429CKD bed narrowPeak peaks ENCSR966YYJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens BMI1-human DNA False 2017-05-17 ENCODE 1 ENCFF583FAG, ENCFF585TAQ 6329550 ENCODE Processing Pipeline e0bd65df878f8898b196f46c8081c083 https://www.encodeproject.org/files/ENCFF429CKD/@@download/ENCFF429CKD.bed.gz hg19 released ENCFF482XGS bed narrowPeak peaks ENCSR384LYW ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens EZH2-human DNA False 2016-11-23 ENCODE 1 ENCFF579XSU, ENCFF812MYK, ENCFF831TJC 6898050 ENCODE Processing Pipeline d2cec1c222fd66ebdf12467db2696c8c https://www.encodeproject.org/files/ENCFF482XGS/@@download/ENCFF482XGS.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample ENCFF572LJS bed narrowPeak peaks ENCSR923UTX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NONO-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF217UCE, ENCFF701CVL, ENCFF825CNQ 5922579 ENCODE Processing Pipeline 1454a7a287c40636c34edc8d71f040e4 https://www.encodeproject.org/files/ENCFF572LJS/@@download/ENCFF572LJS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF921NFP bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6110753 ENCODE Processing Pipeline e52657fac40c5ac9a2b369de1e79ef29 https://www.encodeproject.org/files/ENCFF921NFP/@@download/ENCFF921NFP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF019TKV bed narrowPeak peaks ENCSR332EYT ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT1-human DNA False 2014-07-07 ENCODE 1 ENCFF895RMY, ENCFF941TZZ 6288601 ENCODE Processing Pipeline 0c771f82287777948022b7b5d6501df8 https://www.encodeproject.org/files/ENCFF019TKV/@@download/ENCFF019TKV.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption ENCFF105DON bed narrowPeak peaks ENCSR807LQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF360KGZ 7004943 ENCODE Processing Pipeline eb32a1d88a471c1e3a5d6dc7c90801f9 https://www.encodeproject.org/files/ENCFF105DON/@@download/ENCFF105DON.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF546TCH bed narrowPeak peaks ENCSR419ODQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF507-human DNA False 2018-01-26 ENCODE 1 ENCFF447KVS, ENCFF693VLX, ENCFF823USR 5754519 ENCODE Processing Pipeline b5ee5379778f3474e93fd9fb1f8ec7e4 https://www.encodeproject.org/files/ENCFF546TCH/@@download/ENCFF546TCH.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF244PNH bed narrowPeak peaks ENCSR841NDX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELF1-human DNA False 2017-06-26 ENCODE 1 ENCFF560XEW, ENCFF592WAL, ENCFF901CND 6962772 ENCODE Processing Pipeline a597a04e19cbee928bc7ce829def9157 https://www.encodeproject.org/files/ENCFF244PNH/@@download/ENCFF244PNH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF361EMP bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF984NVJ 6580997 ENCODE Processing Pipeline 2299b20bf8507132afdc05f47fa6d9ae https://www.encodeproject.org/files/ENCFF361EMP/@@download/ENCFF361EMP.bed.gz hg19 released file validation error mismatched file status ENCFF951JQE bed narrowPeak peaks ENCSR656JZL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-HHEX-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF606ZAJ 4863345 ENCODE Processing Pipeline f2e1c6a0738cd3a86f7b818d77934019 https://www.encodeproject.org/files/ENCFF951JQE/@@download/ENCFF951JQE.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization characterization(s) pending review ENCFF286IKG bed narrowPeak peaks ENCSR727HME ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF007DFB, ENCFF075IXF 4762875 ENCODE Processing Pipeline 3c4f7710d70c86e7f07f5e0bf9a8294e https://www.encodeproject.org/files/ENCFF286IKG/@@download/ENCFF286IKG.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF316SRU bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human DNA False 2016-02-16 ENCODE 1 ENCFF180RGQ, ENCFF548ERH 5694368 ENCODE Processing Pipeline 846b3c258e98742cc867e2e1be70d7d5 https://www.encodeproject.org/files/ENCFF316SRU/@@download/ENCFF316SRU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF551UAP bed narrowPeak peaks ENCSR011XCI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF585B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF555IYB 6767492 ENCODE Processing Pipeline f7a2ab098de8a1d7711ee5bb454a241b https://www.encodeproject.org/files/ENCFF551UAP/@@download/ENCFF551UAP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF654LZI bed narrowPeak peaks ENCSR679KXF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF23-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF738NDC 6593209 ENCODE Processing Pipeline ce7d57fd152513231146d93702507798 https://www.encodeproject.org/files/ENCFF654LZI/@@download/ENCFF654LZI.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF562GBY bed narrowPeak peaks ENCSR789GVU ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens BHLHE40-human DNA False 2016-11-18 ENCODE 1 ENCFF095FXN, ENCFF529BVI, ENCFF772FBN 6697088 ENCODE Processing Pipeline 6f7fb53ffc5ac5a571fd5178be77b46d https://www.encodeproject.org/files/ENCFF562GBY/@@download/ENCFF562GBY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity duplicate lane review ENCFF190AMH bed narrowPeak peaks ENCSR451CYX ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280D-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF320JZH 6726328 ENCODE Processing Pipeline e5fd67a904e8d3ccfbdd1aa77cb8b6f0 https://www.encodeproject.org/files/ENCFF190AMH/@@download/ENCFF190AMH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF051SGG bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF338SXL, ENCFF493QSH 6526722 ENCODE Processing Pipeline 286f34882824089be1fb41559efb60cb https://www.encodeproject.org/files/ENCFF051SGG/@@download/ENCFF051SGG.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF657QUD bed narrowPeak peaks ENCSR145CXH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF135XJA, ENCFF500AAN 5724174 ENCODE Processing Pipeline befd04f20d78959ba8db1b890bd3a422 https://www.encodeproject.org/files/ENCFF657QUD/@@download/ENCFF657QUD.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF580YZC bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF280IUC, ENCFF477SGV 4439473 ENCODE Processing Pipeline 0071dbbbdc8a024e819944fc4bb4ebe8 https://www.encodeproject.org/files/ENCFF580YZC/@@download/ENCFF580YZC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO missing control alignments ENCFF750SRP bed narrowPeak peaks ENCSR481FEC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB8A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF754QAG 7099179 ENCODE Processing Pipeline 092b96b9751fceb0ea57ff3821c2e7d7 https://www.encodeproject.org/files/ENCFF750SRP/@@download/ENCFF750SRP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF766ECI bed narrowPeak peaks ENCSR762DQP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF658-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF201SSP 6595900 ENCODE Processing Pipeline fcc6de965d8eba5d592f5d28ec1c69d9 https://www.encodeproject.org/files/ENCFF766ECI/@@download/ENCFF766ECI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF440XJQ bed narrowPeak peaks ENCSR773REP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB7A-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF739JCB 6966236 ENCODE Processing Pipeline c64e8e89cc39e455c615d3a1aec5b5f4 https://www.encodeproject.org/files/ENCFF440XJQ/@@download/ENCFF440XJQ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF569FCI bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 5472948 ENCODE Processing Pipeline 6752348e3499f5f3c9d5448f9d2a13e0 https://www.encodeproject.org/files/ENCFF569FCI/@@download/ENCFF569FCI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF879DVA bed narrowPeak peaks ENCSR062HDL ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF635JVW 5669364 ENCODE Processing Pipeline e3616404aac8fc18f1d8368efb993956 https://www.encodeproject.org/files/ENCFF879DVA/@@download/ENCFF879DVA.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance ENCFF808YAS bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA False 2016-06-14 ENCODE 1 ENCFF389WLJ, ENCFF581ZJL 6588440 ENCODE Processing Pipeline b7d7d11be5c02c6de486c7485eeaf585 https://www.encodeproject.org/files/ENCFF808YAS/@@download/ENCFF808YAS.bed.gz hg19 released mild to moderate bottlenecking ENCFF313BLC bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 4894675 ENCODE Processing Pipeline 8f84cbba7c25553b0ad77c3c82f8db38 https://www.encodeproject.org/files/ENCFF313BLC/@@download/ENCFF313BLC.bed.gz hg19 released low read length ENCFF351HRN bed narrowPeak peaks ENCSR101FJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF384-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF993IXQ 5154854 ENCODE Processing Pipeline 1f04162ac8572c6db11a261c832242b5 https://www.encodeproject.org/files/ENCFF351HRN/@@download/ENCFF351HRN.bed.gz hg19 archived low read length ENCFF071TPY bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human DNA False 2016-09-27 ENCODE 1 ENCFF160VXC, ENCFF720ZIN 6730526 ENCODE Processing Pipeline ed84f45cddfdff51c39de9b315cdc819 https://www.encodeproject.org/files/ENCFF071TPY/@@download/ENCFF071TPY.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF865KAB bed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens 3xFLAG-ZNF3-human DNA False 2018-02-20 ENCODE 1 ENCFF041VKO, ENCFF061QOJ 6894302 ENCODE Processing Pipeline d6cd2c4f3aa910ba10c39033be8de54f https://www.encodeproject.org/files/ENCFF865KAB/@@download/ENCFF865KAB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF329QXP bed narrowPeak peaks ENCSR841YWU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF805PAZ 5909311 ENCODE Processing Pipeline 561ffac6c621f1477c7d50cd2543cd4c https://www.encodeproject.org/files/ENCFF329QXP/@@download/ENCFF329QXP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF536TDH bed narrowPeak peaks ENCSR785YRL ChIP-seq CL:0000775 neutrophil primary cell Homo sapiens CTCF-human DNA False 2016-12-01 ENCODE 1 ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ 5644080 ENCODE Processing Pipeline 05b105e77069b9e7001308767202f8e7 https://www.encodeproject.org/files/ENCFF536TDH/@@download/ENCFF536TDH.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF224GWU bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human DNA False 2016-06-14 ENCODE 1 ENCFF056YEU, ENCFF581ZJL 6885777 ENCODE Processing Pipeline 70192d3307157e7e26c82dba98d77c9d https://www.encodeproject.org/files/ENCFF224GWU/@@download/ENCFF224GWU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF934HHY bed narrowPeak peaks ENCSR177VFS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2B-human DNA False 2018-02-13 ENCODE 1 ENCFF585JBT, ENCFF592WAL, ENCFF901CND 7215031 ENCODE Processing Pipeline a06da6d17993a7d37f08181186114c24 https://www.encodeproject.org/files/ENCFF934HHY/@@download/ENCFF934HHY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking, partially characterized antibody ENCFF656XHS bed narrowPeak peaks ENCSR793USK ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2-human DNA False 2017-11-13 ENCODE 1 ENCFF567WDW, ENCFF618RNL, ENCFF753PRR 7090119 ENCODE Processing Pipeline b2f915ba9058099b44bb9cf8e4072517 https://www.encodeproject.org/files/ENCFF656XHS/@@download/ENCFF656XHS.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF578JBZ bed narrowPeak peaks ENCSR397DQC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF16-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF283HYB 6927700 ENCODE Processing Pipeline e4ad790cbc06e7cd9f13035ba74e4fb2 https://www.encodeproject.org/files/ENCFF578JBZ/@@download/ENCFF578JBZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF734SUP bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF105XTZ, ENCFF581ZJL 6729307 ENCODE Processing Pipeline 74392f29101d939774a874931fce12b7 https://www.encodeproject.org/files/ENCFF734SUP/@@download/ENCFF734SUP.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF894WLR bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF103MEZ, ENCFF502LLI 5826405 ENCODE Processing Pipeline ff8b608eefb951b37466226b0b1091bd https://www.encodeproject.org/files/ENCFF894WLR/@@download/ENCFF894WLR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF557POD bed narrowPeak peaks ENCSR234VCE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF583FAG, ENCFF931KUQ 6357566 ENCODE Processing Pipeline 42a0cf28f4093b9795357387a02eeeed https://www.encodeproject.org/files/ENCFF557POD/@@download/ENCFF557POD.bed.gz hg19 released ENCFF595WOT bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 5473895 ENCODE Processing Pipeline b391f82d53c85e2ef3dee4acadb133f6 https://www.encodeproject.org/files/ENCFF595WOT/@@download/ENCFF595WOT.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF077UUI bed narrowPeak peaks ENCSR176EXN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF583FAG, ENCFF931IXW 5694423 ENCODE Processing Pipeline 11a1691bb4db6c0265ab1fe1653ad5bb https://www.encodeproject.org/files/ENCFF077UUI/@@download/ENCFF077UUI.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF920IJY bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF065XRG, ENCFF581ZJL 6522057 ENCODE Processing Pipeline 5eabd6928477c3a58ca0ae21b1f17a75 https://www.encodeproject.org/files/ENCFF920IJY/@@download/ENCFF920IJY.bed.gz hg19 released low read depth ENCFF617ITM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5690731 ENCODE Processing Pipeline 47e8e4e99c49eeeb1c8a78ebac1096c1 https://www.encodeproject.org/files/ENCFF617ITM/@@download/ENCFF617ITM.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF558QUM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5904108 ENCODE Processing Pipeline b80370bc9652a73cb54822a4fd3c9a3b https://www.encodeproject.org/files/ENCFF558QUM/@@download/ENCFF558QUM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF801APL bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human DNA False 2017-12-04 ENCODE 1 ENCFF254TEL, ENCFF834IGQ 6631369 ENCODE Processing Pipeline 62a35ad14213b01f4f8e77964222add6 https://www.encodeproject.org/files/ENCFF801APL/@@download/ENCFF801APL.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF768FVV bed narrowPeak peaks ENCSR934NHU ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens MXI1-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF456TDF, ENCFF980CFV 6686837 ENCODE Processing Pipeline d1b971ba40165b17e58124ce9b7d7255 https://www.encodeproject.org/files/ENCFF768FVV/@@download/ENCFF768FVV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF096VAL bed narrowPeak peaks ENCSR729LGA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SP1-human DNA False 2016-09-01 ENCODE 1 ENCFF007UHY, ENCFF583FAG 6055216 ENCODE Processing Pipeline d10dce3423158564b44ccee7081d5b39 https://www.encodeproject.org/files/ENCFF096VAL/@@download/ENCFF096VAL.bed.gz hg19 released ENCFF159QMJ bed narrowPeak peaks ENCSR469WII ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BMI1-human DNA False 2016-11-18 ENCODE 1 ENCFF815FYD, ENCFF901CND 6568482 ENCODE Processing Pipeline 6778d83ba7f736f01fff4506f941afd1 https://www.encodeproject.org/files/ENCFF159QMJ/@@download/ENCFF159QMJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF426TDF bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF654EHF, ENCFF678QLX, ENCFF991UTU 5381827 ENCODE Processing Pipeline daf1fd78cb74d49c5226bafe1b0e4abe https://www.encodeproject.org/files/ENCFF426TDF/@@download/ENCFF426TDF.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF774TWW bed narrowPeak peaks ENCSR345YWJ ChIP-seq UBERON:0002107 liver tissue Homo sapiens ZBTB33-human DNA False 2016-09-23 ENCODE 1 ENCFF442DMR, ENCFF654EHF, ENCFF991UTU 5616210 ENCODE Processing Pipeline 3a18fc63bbba4a86b9d10a4bcf1c6310 https://www.encodeproject.org/files/ENCFF774TWW/@@download/ENCFF774TWW.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF455ZJN bed narrowPeak peaks ENCSR611JJS ChIP-seq EFO:0002106 A673 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF042EJM, ENCFF053FUQ, ENCFF705RUU 6363815 ENCODE Processing Pipeline 112873223dadbbd97b72279adcfadf15 https://www.encodeproject.org/files/ENCFF455ZJN/@@download/ENCFF455ZJN.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF801SBR bed narrowPeak peaks ENCSR211PZO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLI4-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF091YMR 6895929 ENCODE Processing Pipeline 4e6346fb1658b2f807cabf90b60b5ba1 https://www.encodeproject.org/files/ENCFF801SBR/@@download/ENCFF801SBR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF334YYA bed narrowPeak peaks ENCSR767XSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF555-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF053SKK, ENCFF182WHU 6999072 ENCODE Processing Pipeline 298f99ed0cb8c194695c8ae3a4f69c6c https://www.encodeproject.org/files/ENCFF334YYA/@@download/ENCFF334YYA.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms missing control alignments ENCFF982HET bed narrowPeak peaks ENCSR330EXS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RBBP5-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF666GAR 5695720 ENCODE Processing Pipeline dacd80e8055a8eea9128c4bd72dea1e1 https://www.encodeproject.org/files/ENCFF982HET/@@download/ENCFF982HET.bed.gz hg19 released ENCFF697WQI bed narrowPeak peaks ENCSR770PQN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF742YPV 6924873 ENCODE Processing Pipeline 5d1b436cfc7345873306b1412da9e649 https://www.encodeproject.org/files/ENCFF697WQI/@@download/ENCFF697WQI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF759MWN bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF085AZW, ENCFF581ZJL 6464456 ENCODE Processing Pipeline 3e6b7da4081d167ce8628755eb7f42ae https://www.encodeproject.org/files/ENCFF759MWN/@@download/ENCFF759MWN.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF316KPE bed narrowPeak peaks ENCSR028EGI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF26-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF890KOK 6643628 ENCODE Processing Pipeline dd3b2937d29ed7e9938d9829735fe39d https://www.encodeproject.org/files/ENCFF316KPE/@@download/ENCFF316KPE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF567WYM bed narrowPeak peaks ENCSR198ZYJ ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens RAD21-human DNA False 2014-07-07 ENCODE 1 ENCFF077BZZ, ENCFF080XQT, ENCFF980CFV 6808638 ENCODE Processing Pipeline 8ddf8c10ad5bc526cf954e7831740a35 https://www.encodeproject.org/files/ENCFF567WYM/@@download/ENCFF567WYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF121EDV bed narrowPeak peaks ENCSR714LZQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF664-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF973PTB 6820687 ENCODE Processing Pipeline f198b8db276d8e9214e3550efd5ce3a1 https://www.encodeproject.org/files/ENCFF121EDV/@@download/ENCFF121EDV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF113ZZY bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF926PMG 6362678 ENCODE Processing Pipeline 00f61c261bb370338c498caa0b167c0f https://www.encodeproject.org/files/ENCFF113ZZY/@@download/ENCFF113ZZY.bed.gz hg19 released mild to moderate bottlenecking ENCFF390GHC bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human DNA False 2016-04-22 ENCODE 1 ENCFF539AVI, ENCFF581ZJL 6835475 ENCODE Processing Pipeline 1e4982da3ee81697cbcd6e206d6bd045 https://www.encodeproject.org/files/ENCFF390GHC/@@download/ENCFF390GHC.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF708ZIZ bed narrowPeak peaks ENCSR125DKL ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-29 ENCODE 1 ENCFF199IID, ENCFF349UGY, ENCFF408JOT 6590604 ENCODE Processing Pipeline 15e010e44a5aeebdda732146a668ae15 https://www.encodeproject.org/files/ENCFF708ZIZ/@@download/ENCFF708ZIZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF452AVX bed narrowPeak peaks ENCSR211GNP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN4-human DNA formaldehyde False 2017-02-21 ENCODE 1 ENCFF582WWH 6896578 ENCODE Processing Pipeline f3a3495020e64d1b997d09cb3ed37b5f https://www.encodeproject.org/files/ENCFF452AVX/@@download/ENCFF452AVX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF661ZVZ bed narrowPeak peaks ENCSR872ZHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM5A-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF978GRX 7118209 ENCODE Processing Pipeline a9f82bcd6d8f0609a51d9a8837db3803 https://www.encodeproject.org/files/ENCFF661ZVZ/@@download/ENCFF661ZVZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF243GQS bed narrowPeak peaks ENCSR093HXE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF277EIF 6533063 ENCODE Processing Pipeline 5eca0798704b23154339484c30417ed2 https://www.encodeproject.org/files/ENCFF243GQS/@@download/ENCFF243GQS.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF911OWN bed narrowPeak peaks ENCSR019WUS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF10-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF420VDR 6845880 ENCODE Processing Pipeline f401e45914adb80c15d0fa47d35e33d5 https://www.encodeproject.org/files/ENCFF911OWN/@@download/ENCFF911OWN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF232YYY bed narrowPeak peaks ENCSR547TGL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF701-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF479DTT 6494225 ENCODE Processing Pipeline ff62fb896090099547fc56d938568d85 https://www.encodeproject.org/files/ENCFF232YYY/@@download/ENCFF232YYY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF900QTS bed narrowPeak peaks ENCSR381VYR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP69B-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF667TBL 7042157 ENCODE Processing Pipeline 7ea4332f4d02ab7d74887c18b08edac8 https://www.encodeproject.org/files/ENCFF900QTS/@@download/ENCFF900QTS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF294PGV bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5612376 ENCODE Processing Pipeline 0b23ee499ba75b482e1616b4acba89ad https://www.encodeproject.org/files/ENCFF294PGV/@@download/ENCFF294PGV.bed.gz hg19 released mild to moderate bottlenecking ENCFF706IKA bed narrowPeak peaks ENCSR408JQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA False 2014-07-07 ENCODE 1 ENCFF288FXI, ENCFF941TZZ 5813485 ENCODE Processing Pipeline 80cee6f29bd85bbc394a23091e4398f8 https://www.encodeproject.org/files/ENCFF706IKA/@@download/ENCFF706IKA.bed.gz hg19 archived mild to moderate bottlenecking ENCFF246CBF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5734520 ENCODE Processing Pipeline 86b483a18a63ce2a53d4da7d522dfe3b https://www.encodeproject.org/files/ENCFF246CBF/@@download/ENCFF246CBF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF766PWX bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5925779 ENCODE Processing Pipeline 4ab6a0de3a57b3c8f5aed0957747ab0a https://www.encodeproject.org/files/ENCFF766PWX/@@download/ENCFF766PWX.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF513SAI bed narrowPeak peaks ENCSR000ECQ ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens SUPT20H-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF712CHE, ENCFF814FCQ 3459697 ENCODE Processing Pipeline aa7a3604bb5a36eecdb1213b9b6b8acf https://www.encodeproject.org/files/ENCFF513SAI/@@download/ENCFF513SAI.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample ENCFF949QLM bed narrowPeak peaks ENCSR115BLD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens KDM1A-human DNA False 2017-08-12 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF837FXP 7128344 ENCODE Processing Pipeline 02a8c5aa305e7707add27f9c004982e2 https://www.encodeproject.org/files/ENCFF949QLM/@@download/ENCFF949QLM.bed.gz hg19 released low read length, mild to moderate bottlenecking ENCFF541ESI bed narrowPeak peaks ENCSR639GWS ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM1A-human DNA False 2016-11-23 ENCODE 1 ENCFF801GGG, ENCFF843XEZ, ENCFF881DVS 5562298 ENCODE Processing Pipeline 625c668df50ac0d775bb870c3b09ebcb https://www.encodeproject.org/files/ENCFF541ESI/@@download/ENCFF541ESI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF995FFV bed narrowPeak peaks ENCSR004PLU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB10-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF771JAW 6924671 ENCODE Processing Pipeline 5865cb5a168df89914dfe809d24abda4 https://www.encodeproject.org/files/ENCFF995FFV/@@download/ENCFF995FFV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF466JSP bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human DNA False 2018-01-31 ENCODE 1 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV 6434268 ENCODE Processing Pipeline 23f55f2073dafeb259497b0593e8c0ec https://www.encodeproject.org/files/ENCFF466JSP/@@download/ENCFF466JSP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF751FQC bed narrowPeak peaks ENCSR265WJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-KLF4-human DNA False 2016-06-13 ENCODE 1 ENCFF772MDW, ENCFF987QVP 6396051 ENCODE Processing Pipeline 2eff0636ee4eb232d4bbd74b854293d8 https://www.encodeproject.org/files/ENCFF751FQC/@@download/ENCFF751FQC.bed.gz hg19 released missing genetic modification characterization ENCFF589OJB bed narrowPeak peaks ENCSR591DTH ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF269ZDG, ENCFF338XLV 7117810 ENCODE Processing Pipeline e6ab79b079eb97147209daee8a2e759b https://www.encodeproject.org/files/ENCFF589OJB/@@download/ENCFF589OJB.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF828MTJ bed narrowPeak peaks ENCSR781EQJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB48-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF616KOM 7102953 ENCODE Processing Pipeline e9ff0ed4c39b251826e91d13afc9fa19 https://www.encodeproject.org/files/ENCFF828MTJ/@@download/ENCFF828MTJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF373WLW bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF448TVU, ENCFF522HDC, ENCFF727JYL 6224554 ENCODE Processing Pipeline 63cf6cc7aeb614a2c75208157d5e59db https://www.encodeproject.org/files/ENCFF373WLW/@@download/ENCFF373WLW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF505URD bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-12-19 ENCODE 1 ENCFF581ZJL, ENCFF948XRU 7107880 ENCODE Processing Pipeline daaf9e7a697b0d64edcb01c4a0f21f2a https://www.encodeproject.org/files/ENCFF505URD/@@download/ENCFF505URD.bed.gz hg19 released ENCFF578FSD bed narrowPeak peaks ENCSR430YRJ ChIP-seq EFO:0005694 KMS-11 cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF289HRS, ENCFF668YCW 6174240 ENCODE Processing Pipeline 62dc1a5f5f88c297692e2532567a200b https://www.encodeproject.org/files/ENCFF578FSD/@@download/ENCFF578FSD.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF248VST bed narrowPeak peaks ENCSR000DZQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF915EPF 4743208 ENCODE Processing Pipeline 22f615319ddaccb9e66d6dc8fbccd389 https://www.encodeproject.org/files/ENCFF248VST/@@download/ENCFF248VST.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF459CAS bed narrowPeak peaks ENCSR084RDK ChIP-seq EFO:0002167 DOHH2 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF548ADC, ENCFF555IHR 5342620 ENCODE Processing Pipeline f5df4923584165f94918c3d895af839e https://www.encodeproject.org/files/ENCFF459CAS/@@download/ENCFF459CAS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample poor library complexity, severe bottlenecking ENCFF717YOR bed narrowPeak peaks ENCSR667UWT ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF088BUC, ENCFF908GSJ 7021193 ENCODE Processing Pipeline e8c0e0e021ab3b49f4da3134551cfda5 https://www.encodeproject.org/files/ENCFF717YOR/@@download/ENCFF717YOR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF805GLK bed narrowPeak peaks ENCSR218QFN ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF112OEB, ENCFF845BWF 7288365 ENCODE Processing Pipeline 6af28e9ce041e7a432a569fc7f4b5df3 https://www.encodeproject.org/files/ENCFF805GLK/@@download/ENCFF805GLK.bed.gz hg19 released low read length, mild to moderate bottlenecking, antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF940YUU bed narrowPeak peaks ENCSR957KYB ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens BHLHE40-human DNA False 2016-09-01 ENCODE 1 ENCFF880YHS, ENCFF908WOK 4968280 ENCODE Processing Pipeline d080f2ccbe78c1f590ac6e61bbf7cb42 https://www.encodeproject.org/files/ENCFF940YUU/@@download/ENCFF940YUU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth duplicate lane review ENCFF998DOG bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF468BAA 4386773 ENCODE Processing Pipeline fbf22b1fa5c379715ba2c26fac7097af https://www.encodeproject.org/files/ENCFF998DOG/@@download/ENCFF998DOG.bed.gz hg19 released control low read depth, low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF799KLQ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF608UCM, ENCFF834TUP 7302595 ENCODE Processing Pipeline 0da9304d515c27247d0165e6bc65ba65 https://www.encodeproject.org/files/ENCFF799KLQ/@@download/ENCFF799KLQ.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF908JEV bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human DNA False 2016-06-13 ENCODE 1 ENCFF133ZYE, ENCFF754ZXY 6500240 ENCODE Processing Pipeline 70b159f8f15ea265f6041673fefe95e3 https://www.encodeproject.org/files/ENCFF908JEV/@@download/ENCFF908JEV.bed.gz hg19 released missing genetic modification characterization ENCFF948QTU bed narrowPeak peaks ENCSR000BGL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF459TVC 4070956 ENCODE Processing Pipeline 381967f3e371591f8b995b692e8faca9 https://www.encodeproject.org/files/ENCFF948QTU/@@download/ENCFF948QTU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF065GKH bed narrowPeak peaks ENCSR076KZW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF280C-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF030JHL 6541850 ENCODE Processing Pipeline 3dce3d1bf4bf770878ef161b7431a898 https://www.encodeproject.org/files/ENCFF065GKH/@@download/ENCFF065GKH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF146KHO bed narrowPeak peaks ENCSR777YSB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF781-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF113UPL 6468966 ENCODE Processing Pipeline cd520d74237ca29e463379a7c2efa7d1 https://www.encodeproject.org/files/ENCFF146KHO/@@download/ENCFF146KHO.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF204SBR bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF930YAS 6487472 ENCODE Processing Pipeline 1f5cc501e5ab23f31a2431cf6090cec3 https://www.encodeproject.org/files/ENCFF204SBR/@@download/ENCFF204SBR.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF184LWN bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF862OJR 6760658 ENCODE Processing Pipeline e5fada76098ed965199101b8c6704614 https://www.encodeproject.org/files/ENCFF184LWN/@@download/ENCFF184LWN.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF023VOJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2016-04-22 ENCODE 1 ENCFF419BCJ, ENCFF581ZJL 7181376 ENCODE Processing Pipeline 3083a486dc1b0b3129c6eff438f6bf88 https://www.encodeproject.org/files/ENCFF023VOJ/@@download/ENCFF023VOJ.bed.gz hg19 released ENCFF126HBJ bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 4458692 ENCODE Processing Pipeline 17a38a6848d9b81c86be2db1ef3fc780 https://www.encodeproject.org/files/ENCFF126HBJ/@@download/ENCFF126HBJ.bed.gz hg19 released low read length ENCFF774CXV bed narrowPeak peaks ENCSR488EES ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF876KIY 4687227 ENCODE Processing Pipeline 03ffe23db55bbba6325625b7bfd07dbe https://www.encodeproject.org/files/ENCFF774CXV/@@download/ENCFF774CXV.bed.gz hg19 archived low read length ENCFF170VIW bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human DNA False 2016-08-24 ENCODE 1 ENCFF132XOC, ENCFF587NFZ 6469689 ENCODE Processing Pipeline da1a2393510932d7e6a5e9280790a881 https://www.encodeproject.org/files/ENCFF170VIW/@@download/ENCFF170VIW.bed.gz hg19 released file validation error, low read depth, missing genetic modification characterization mismatched file status ENCFF742SNU bed narrowPeak peaks ENCSR189YYK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF744LEM, ENCFF901CND 6734314 ENCODE Processing Pipeline c3c0bbc1f7fd34c2c4379c80b20493de https://www.encodeproject.org/files/ENCFF742SNU/@@download/ENCFF742SNU.bed.gz hg19 released file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity mismatched file status ENCFF849JLW bed narrowPeak peaks ENCSR513MGG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF302-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF832LBH 6354177 ENCODE Processing Pipeline d8ba14cfd522373dab295632d4bc5885 https://www.encodeproject.org/files/ENCFF849JLW/@@download/ENCFF849JLW.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF953EDE bed narrowPeak peaks ENCSR481YWD ChIP-seq EFO:0001086 A549 cell line Homo sapiens SMC3-human DNA False 2016-10-31 ENCODE 1 ENCFF863STQ, ENCFF975XPX 4300896 ENCODE Processing Pipeline cf5b822eccb06180019cbe5566d2f288 https://www.encodeproject.org/files/ENCFF953EDE/@@download/ENCFF953EDE.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF367OHF bed narrowPeak peaks ENCSR011CKE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF897XWU 7147141 ENCODE Processing Pipeline bdca6a0d28cd985c1b6095f8ac70046a https://www.encodeproject.org/files/ENCFF367OHF/@@download/ENCFF367OHF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF288OUP bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 6977464 ENCODE Processing Pipeline 424a9903d251a831a5483e190316a385 https://www.encodeproject.org/files/ENCFF288OUP/@@download/ENCFF288OUP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF583MYK bed narrowPeak peaks ENCSR146NLL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-REPIN1-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF221VQA 6879474 ENCODE Processing Pipeline 76bfd3162a779b60c463d60185ca4503 https://www.encodeproject.org/files/ENCFF583MYK/@@download/ENCFF583MYK.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF320PPT bed narrowPeak peaks ENCSR731AGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN5C-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF376SUD 6808308 ENCODE Processing Pipeline 3088de2380b15a89b119136770b328ce https://www.encodeproject.org/files/ENCFF320PPT/@@download/ENCFF320PPT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF422VXS bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6568266 ENCODE Processing Pipeline ec5244eb4f12cadf3aca61e411e7ab61 https://www.encodeproject.org/files/ENCFF422VXS/@@download/ENCFF422VXS.bed.gz hg19 archived mild to moderate bottlenecking, low read depth ENCFF269OJD bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6428918 ENCODE Processing Pipeline acb90b1069557278322f26bf973da922 https://www.encodeproject.org/files/ENCFF269OJD/@@download/ENCFF269OJD.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF620TKQ bed narrowPeak peaks ENCSR714LYA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF485GAK 7057976 ENCODE Processing Pipeline 08ea10a75af64b15a0250bfe944252b1 https://www.encodeproject.org/files/ENCFF620TKQ/@@download/ENCFF620TKQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF286BGV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2016-10-31 ENCODE 1 ENCFF425DVG, ENCFF581ZJL 6176129 ENCODE Processing Pipeline c9a3e2a7d340aab9c112f48ab6fb8c0c https://www.encodeproject.org/files/ENCFF286BGV/@@download/ENCFF286BGV.bed.gz hg19 released file validation error, low read depth, antibody characterized with exemption mismatched file status ENCFF390PTY bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF287WTN, ENCFF389FCP 4432438 ENCODE Processing Pipeline ab2e3391da9694f3f4d7e4e25f9d67bf https://www.encodeproject.org/files/ENCFF390PTY/@@download/ENCFF390PTY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample control insufficient read depth ENCFF969RHP bed narrowPeak peaks ENCSR194BBY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF221-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF721HXJ 6335609 ENCODE Processing Pipeline b7ee7de9798a1c3c33425886c92f317f https://www.encodeproject.org/files/ENCFF969RHP/@@download/ENCFF969RHP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF656GQP bed narrowPeak peaks ENCSR210MET ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF391-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF382ACR 7027379 ENCODE Processing Pipeline e90c0e2eba8a012518515ca293a501f9 https://www.encodeproject.org/files/ENCFF656GQP/@@download/ENCFF656GQP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF921ESK bed narrowPeak peaks ENCSR775HFF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF791-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF365PEG 6589575 ENCODE Processing Pipeline efa5799c25d22f6d8674a049d96b8862 https://www.encodeproject.org/files/ENCFF921ESK/@@download/ENCFF921ESK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF983BJS bed narrowPeak peaks ENCSR125NBL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF387KXA, ENCFF748HWO, ENCFF762JSN 6641165 ENCODE Processing Pipeline 1d029aa74a6edd58f48d9d753a509270 https://www.encodeproject.org/files/ENCFF983BJS/@@download/ENCFF983BJS.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF355WZV bed narrowPeak peaks ENCSR703KWN ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF429JNW, ENCFF824DBS 5951394 ENCODE Processing Pipeline 689bcd85a94bdcbb93b8f94da9322e50 https://www.encodeproject.org/files/ENCFF355WZV/@@download/ENCFF355WZV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths experiment not submitted to GEO ENCFF614ENJ bed narrowPeak peaks ENCSR753GIA ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens TARDBP-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF159EUB, ENCFF760DHW 6579704 ENCODE Processing Pipeline 9465af03f82d46961a8ef03e93362fa2 https://www.encodeproject.org/files/ENCFF614ENJ/@@download/ENCFF614ENJ.bed.gz hg19 released ENCFF893LMP bed narrowPeak peaks ENCSR000BQF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF725UGE, ENCFF916OWO 4034357 ENCODE Processing Pipeline a02fa2ebee5f917703c8f1c8cfa23b2c https://www.encodeproject.org/files/ENCFF893LMP/@@download/ENCFF893LMP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF488HLT bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2017-02-03 ENCODE 1 ENCFF160VXC, ENCFF775NNT 6425855 ENCODE Processing Pipeline a3be0c0dbff51a7c107cd61844718d65 https://www.encodeproject.org/files/ENCFF488HLT/@@download/ENCFF488HLT.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms, moderate library complexity ENCFF834BCC bed narrowPeak peaks ENCSR569XNP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF583FAG, ENCFF689SLU 6839779 ENCODE Processing Pipeline 450cde9be37115459b7430067e0bb0f7 https://www.encodeproject.org/files/ENCFF834BCC/@@download/ENCFF834BCC.bed.gz hg19 released duplicate lane review ENCFF067FOD bed narrowPeak peaks ENCSR404BPV ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens SMC3-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF105FME, ENCFF980CFV 6991836 ENCODE Processing Pipeline 15b08a64f29cd4b9744c49798726dfa8 https://www.encodeproject.org/files/ENCFF067FOD/@@download/ENCFF067FOD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity ENCFF772HIT bed narrowPeak peaks ENCSR000BSA ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242DVM, ENCFF831FMU 5306321 ENCODE Processing Pipeline 2d56dc8d6dd0bc4727e57c7c1d979985 https://www.encodeproject.org/files/ENCFF772HIT/@@download/ENCFF772HIT.bed.gz hg19 released low read depth biological replicates with identical biosample missing control alignments ENCFF539MNA bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT 6192680 ENCODE Processing Pipeline 929042b07cf8f9c996d1039cf9d60363 https://www.encodeproject.org/files/ENCFF539MNA/@@download/ENCFF539MNA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF611XPF bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF890OID 4886038 ENCODE Processing Pipeline b3815ddeec64dda0ee78e87fa3eebd62 https://www.encodeproject.org/files/ENCFF611XPF/@@download/ENCFF611XPF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF549YDX bed narrowPeak peaks ENCSR267DFA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA False 2016-07-28 ENCODE 1 ENCFF449NNE, ENCFF540FMP 6167982 ENCODE Processing Pipeline 0ddce83637fc1bf4b9c6eeaebf3ab8b8 https://www.encodeproject.org/files/ENCFF549YDX/@@download/ENCFF549YDX.bed.gz hg19 released ENCFF118LCE bed narrowPeak peaks ENCSR279IEM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SIX4-human DNA False 2016-10-11 ENCODE 1 ENCFF282DZQ, ENCFF447KVS, ENCFF823USR 7261148 ENCODE Processing Pipeline b100de3db0800cd9acd176cfee1aef44 https://www.encodeproject.org/files/ENCFF118LCE/@@download/ENCFF118LCE.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF407UZQ bed narrowPeak peaks ENCSR783QUL ChIP-seq EFO:0007112 Loucy cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF552AOU, ENCFF751LWI, ENCFF938OPX 5220701 ENCODE Processing Pipeline 6bc24ca663a7f8480eb8455c6c289f9a https://www.encodeproject.org/files/ENCFF407UZQ/@@download/ENCFF407UZQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF513GHF bed narrowPeak peaks ENCSR392SFJ ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF037HFH, ENCFF976VAT 6543360 ENCODE Processing Pipeline 624f613eb64f5610d48fe6d1dbd7affe https://www.encodeproject.org/files/ENCFF513GHF/@@download/ENCFF513GHF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF877UDE bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human DNA False 2016-06-13 ENCODE 1 ENCFF084TWW, ENCFF449ZQF 7097868 ENCODE Processing Pipeline 1f01fb0e9e35b80561efe31a723b097c https://www.encodeproject.org/files/ENCFF877UDE/@@download/ENCFF877UDE.bed.gz hg19 released missing genetic modification characterization ENCFF610XAF bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human DNA False 2016-06-13 ENCODE 1 ENCFF129ZZR, ENCFF606YNV 7171179 ENCODE Processing Pipeline 6999350ac335a593e5c0587ad900d047 https://www.encodeproject.org/files/ENCFF610XAF/@@download/ENCFF610XAF.bed.gz hg19 released missing genetic modification characterization ENCFF804HAX bed narrowPeak peaks ENCSR000BRF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF242TUC, ENCFF540RWT 4277251 ENCODE Processing Pipeline 82d4f0ca4fbc2c9406b10f5587dc113f https://www.encodeproject.org/files/ENCFF804HAX/@@download/ENCFF804HAX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF499RVM bed narrowPeak peaks ENCSR673WZL ChIP-seq EFO:0002071 LNCAP cell line Homo sapiens 17β-hydroxy-5α-androstan-3-one 10 nM 4 hour CTCF-human DNA False 2017-06-29 ENCODE 1 ENCFF271APY, ENCFF540UGI, ENCFF854RGJ 7197917 ENCODE Processing Pipeline 66fad398ac62fbfd8c5fab793951b147 https://www.encodeproject.org/files/ENCFF499RVM/@@download/ENCFF499RVM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF470XSK bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human DNA False 2016-06-13 ENCODE 1 ENCFF729JBY, ENCFF743HYF 6656025 ENCODE Processing Pipeline 60172433ce6edcbd05d4ded1bb9c513d https://www.encodeproject.org/files/ENCFF470XSK/@@download/ENCFF470XSK.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF920WQE bed narrowPeak peaks ENCSR000BGU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EBF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF069CYJ, ENCFF958RTR 4923420 ENCODE Processing Pipeline bdc4d79c3e5fa3cc217fe423ad027dd9 https://www.encodeproject.org/files/ENCFF920WQE/@@download/ENCFF920WQE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF314SAN bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human DNA False 2014-07-07 ENCODE 1 ENCFF325ZZV, ENCFF335IPE 5353439 ENCODE Processing Pipeline a666fc7ec79b9e3fd8021d4423ecd24c https://www.encodeproject.org/files/ENCFF314SAN/@@download/ENCFF314SAN.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF139FDW bed narrowPeak peaks ENCSR297MUV ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens EZH2phosphoT487-human DNA False 2017-01-15 ENCODE 1 ENCFF538MGJ, ENCFF673QQK, ENCFF968BOJ 5120884 ENCODE Processing Pipeline bc245f6d720ba44499fa9852c7d02b48 https://www.encodeproject.org/files/ENCFF139FDW/@@download/ENCFF139FDW.bed.gz hg19 released borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption NTR biosample ENCFF663NEE bed narrowPeak peaks ENCSR940MHE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MBD2-human DNA False 2016-08-10 ENCODE 1 ENCFF423QHQ, ENCFF728PLX 6098875 ENCODE Processing Pipeline fe497ba7bd418d9567736e0ba2d93435 https://www.encodeproject.org/files/ENCFF663NEE/@@download/ENCFF663NEE.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF087YWI bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6844032 ENCODE Processing Pipeline 56d51b07fede86d082c86048ddf73755 https://www.encodeproject.org/files/ENCFF087YWI/@@download/ENCFF087YWI.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF829ZUO bed narrowPeak peaks ENCSR637QAM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TRIM22-human DNA False 2014-07-07 ENCODE 1 ENCFF287SKW, ENCFF722RLB, ENCFF941TZZ 6933097 ENCODE Processing Pipeline ef3eeda67e93024cd3191b4bc8360646 https://www.encodeproject.org/files/ENCFF829ZUO/@@download/ENCFF829ZUO.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity ENCFF305DNA bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF787RYL 5409592 ENCODE Processing Pipeline 93f75b21553a98bd1d29cf1e1165f03a https://www.encodeproject.org/files/ENCFF305DNA/@@download/ENCFF305DNA.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF162BDU bed narrowPeak peaks ENCSR626VUC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF209SJM, ENCFF223KCT 5588455 ENCODE Processing Pipeline 1f3567c960dc1a40d7c5fc384fd7a346 https://www.encodeproject.org/files/ENCFF162BDU/@@download/ENCFF162BDU.bed.gz hg19 archived borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF939VKQ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF298RPP, ENCFF581ZJL 6452652 ENCODE Processing Pipeline 99eb1c6a796e6f18b5c580fbceb21067 https://www.encodeproject.org/files/ENCFF939VKQ/@@download/ENCFF939VKQ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF454FOO bed narrowPeak peaks ENCSR000BII ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POU2F2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF733ZQG, ENCFF864ASU 5667549 ENCODE Processing Pipeline 20e586fee7cf6030f97b80d9c546dab1 https://www.encodeproject.org/files/ENCFF454FOO/@@download/ENCFF454FOO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF001UTI bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1268710 Vishwanath Iyer, UTA 92cc26545cddc9889006c0bbab6c3a83 https://www.encodeproject.org/files/ENCFF001UTI/@@download/ENCFF001UTI.bed.gz hg19 archived mild to moderate bottlenecking missing derived_from, biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF867DDR bed narrowPeak peaks ENCSR000DMF ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF140XGV, ENCFF776OUN 3572577 ENCODE Processing Pipeline 330781b220a5c21ec41b1910fb1ef55f https://www.encodeproject.org/files/ENCFF867DDR/@@download/ENCFF867DDR.bed.gz hg19 released mild to moderate bottlenecking biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF237AGN bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 4910075 ENCODE Processing Pipeline b3f02fb185d6d7e6363c10a7e18e6500 https://www.encodeproject.org/files/ENCFF237AGN/@@download/ENCFF237AGN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF048TGI bed narrowPeak peaks ENCSR444LIN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF7-human DNA False 2016-08-10 ENCODE 1 ENCFF457VAD, ENCFF925QJE 5117975 ENCODE Processing Pipeline bdacf9514d2b0baf47632a772a4cbbfa https://www.encodeproject.org/files/ENCFF048TGI/@@download/ENCFF048TGI.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF326RDQ bed narrowPeak peaks ENCSR000BIO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF692IRB 3778655 ENCODE Processing Pipeline 195e3c59951c338fd2cc7df7b6dd36d6 https://www.encodeproject.org/files/ENCFF326RDQ/@@download/ENCFF326RDQ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF171LJW bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF624TXF 5897849 ENCODE Processing Pipeline e77ca1dd2ba5e555688871ed01753bc8 https://www.encodeproject.org/files/ENCFF171LJW/@@download/ENCFF171LJW.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF219UCA bed narrowPeak peaks ENCSR974OFJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KLF5-human DNA False 2014-07-07 ENCODE 1 ENCFF931ITC, ENCFF941TZZ 6147706 ENCODE Processing Pipeline 836543c3ab382799f66b46fae9aeb8a4 https://www.encodeproject.org/files/ENCFF219UCA/@@download/ENCFF219UCA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF134UIM bed narrowPeak peaks ENCSR028NUR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF592-human DNA False 2016-06-14 ENCODE 1 ENCFF198QUT, ENCFF583FAG 5681608 ENCODE Processing Pipeline e7854ed555b792a50ba5d4d7d56ece65 https://www.encodeproject.org/files/ENCFF134UIM/@@download/ENCFF134UIM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF493YRO bed narrowPeak peaks ENCSR000BIQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF503ZQQ 3734763 ENCODE Processing Pipeline 1bf74b6f5643a0762889de42c7498a65 https://www.encodeproject.org/files/ENCFF493YRO/@@download/ENCFF493YRO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF067UPX bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF589BQJ 4686830 ENCODE Processing Pipeline 953df01f5694db5b646bd916b71b2a69 https://www.encodeproject.org/files/ENCFF067UPX/@@download/ENCFF067UPX.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF075PCI bed narrowPeak peaks ENCSR000BKA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF477EHC, ENCFF963CVB 4277244 ENCODE Processing Pipeline e42f904d05a8e549ceaf5946f90b146c https://www.encodeproject.org/files/ENCFF075PCI/@@download/ENCFF075PCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF452NTV bed narrowPeak peaks ENCSR000BIB ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF338LXS, ENCFF671VNQ 4169085 ENCODE Processing Pipeline ef4d0c765acd3139e669be500c3ce54d https://www.encodeproject.org/files/ENCFF452NTV/@@download/ENCFF452NTV.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample ENCFF846TRX bed narrowPeak peaks ENCSR207PFI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBED1-human DNA False 2016-02-05 ENCODE 1 ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA 6731053 ENCODE Processing Pipeline 7268d5254a0b1fb2e2af59a0bf851ec8 https://www.encodeproject.org/files/ENCFF846TRX/@@download/ENCFF846TRX.bed.gz hg19 released borderline replicate concordance ENCFF348PXE bed narrowPeak peaks ENCSR000BJK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF802GPW 4800977 ENCODE Processing Pipeline bb1d33e242331a08ebb45e75268793b4 https://www.encodeproject.org/files/ENCFF348PXE/@@download/ENCFF348PXE.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF929SGA bed narrowPeak peaks ENCSR000EDO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF560JLB 4706650 ENCODE Processing Pipeline d42a88d216a12127529d2d79002fbd92 https://www.encodeproject.org/files/ENCFF929SGA/@@download/ENCFF929SGA.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF039LAR bed narrowPeak peaks ENCSR000BML ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF280GWX, ENCFF704WFR 5860686 ENCODE Processing Pipeline b657c99a66af8fc4b0ec8c9b3eace9e9 https://www.encodeproject.org/files/ENCFF039LAR/@@download/ENCFF039LAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF935RWY bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human DNA False 2016-06-28 ENCODE 1 ENCFF023YMB, ENCFF388AJM 6270021 ENCODE Processing Pipeline dbc92775e620277e3b12ed79fdb72198 https://www.encodeproject.org/files/ENCFF935RWY/@@download/ENCFF935RWY.bed.gz hg19 released low read depth ENCFF947XIL bed narrowPeak peaks ENCSR088HZI ChIP-seq EFO:0002357 SU-DHL-6 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF349UGY, ENCFF408JOT, ENCFF617BET 6824200 ENCODE Processing Pipeline 423e5c587283524e2bfd1703cf571e12 https://www.encodeproject.org/files/ENCFF947XIL/@@download/ENCFF947XIL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF617LWA bed narrowPeak peaks ENCSR000EDS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF862AER 4994239 ENCODE Processing Pipeline 8aa8aa4ef2f55bb730811deb12821ea0 https://www.encodeproject.org/files/ENCFF617LWA/@@download/ENCFF617LWA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF620ZIR bed narrowPeak peaks ENCSR000BHP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOSL2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015KCD, ENCFF334MOO, ENCFF472OOV 5934827 ENCODE Processing Pipeline c34ac632ec2a669dc3f87f1e6b604948 https://www.encodeproject.org/files/ENCFF620ZIR/@@download/ENCFF620ZIR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF977BTX bed narrowPeak peaks ENCSR974HQI ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF570YAA, ENCFF798GTB 4414175 ENCODE Processing Pipeline 16859ac5f1427c0278c248fe73164ebb https://www.encodeproject.org/files/ENCFF977BTX/@@download/ENCFF977BTX.bed.gz hg19 released control low read depth, low read depth, antibody characterized with exemption ENCFF866VBI bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human DNA False 2017-09-28 ENCODE 1 ENCFF100APY, ENCFF262CJE, ENCFF506DFV 6718826 ENCODE Processing Pipeline 462aff753a325d16f959eb396e6e026a https://www.encodeproject.org/files/ENCFF866VBI/@@download/ENCFF866VBI.bed.gz hg19 released mild to moderate bottlenecking ENCFF812IYD bed narrowPeak peaks ENCSR912NMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NONO-human DNA False 2016-06-14 ENCODE 1 ENCFF368TVX, ENCFF583FAG 5657627 ENCODE Processing Pipeline 869a5b82e321ddc4bf20075abe81d92e https://www.encodeproject.org/files/ENCFF812IYD/@@download/ENCFF812IYD.bed.gz hg19 released borderline replicate concordance ENCFF136HKZ bed narrowPeak peaks ENCSR000DZE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF047BBR, ENCFF110OHA, ENCFF545DZO 4558146 ENCODE Processing Pipeline 3bb29edec50c3d5ead6524ef00531fc2 https://www.encodeproject.org/files/ENCFF136HKZ/@@download/ENCFF136HKZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF614UCN bed narrowPeak peaks ENCSR299CAV ChIP-seq UBERON:0008367 breast epithelium tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF119LQA, ENCFF152VGP 6005626 ENCODE Processing Pipeline 0c00bcc1a3f8a1aa1054e0e4fb0dce9e https://www.encodeproject.org/files/ENCFF614UCN/@@download/ENCFF614UCN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF455MUC bed narrowPeak peaks ENCSR000BJD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF401FGJ, ENCFF958RTR 3468731 ENCODE Processing Pipeline 66e5c23d8485c0e66c34c7276e574804 https://www.encodeproject.org/files/ENCFF455MUC/@@download/ENCFF455MUC.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF845YAV bed narrowPeak peaks ENCSR000BPM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour YY1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF664NJN, ENCFF864UEQ 6556130 ENCODE Processing Pipeline 79a717fc5f099cde1689cb817eef3c8f https://www.encodeproject.org/files/ENCFF845YAV/@@download/ENCFF845YAV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF562GZU bed narrowPeak peaks ENCSR000EWY ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF863SME 6262776 ENCODE Processing Pipeline e685eefb70eb7e0dad36efe49485b5d8 https://www.encodeproject.org/files/ENCFF562GZU/@@download/ENCFF562GZU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF619PID bed narrowPeak peaks ENCSR801BWR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF155-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF907AFT 6293850 ENCODE Processing Pipeline fb8f0845e99629780ffebcba5d3b2aff https://www.encodeproject.org/files/ENCFF619PID/@@download/ENCFF619PID.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF511NBR bed narrowPeak peaks ENCSR000DYC ChIP-seq EFO:0001086 A549 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF518QII 4845182 ENCODE Processing Pipeline 408a9aff4470bd0dda09b5399f114544 https://www.encodeproject.org/files/ENCFF511NBR/@@download/ENCFF511NBR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF039AWP bed narrowPeak peaks ENCSR000EXR ChIP-seq CL:0000765 erythroblast primary cell Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF462CTI, ENCFF949HSN 4232953 ENCODE Processing Pipeline bb939532e10026a90ceb2f505c7c67e3 https://www.encodeproject.org/files/ENCFF039AWP/@@download/ENCFF039AWP.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF001XQH bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKX 1162789 John Stamatoyannopoulos, UW dd855a335c003a27e3e2c404462bf149 https://www.encodeproject.org/files/ENCFF001XQH/@@download/ENCFF001XQH.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF507VHP bed narrowPeak peaks ENCSR000DTL ChIP-seq CL:0000706 choroid plexus epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF519LBB, ENCFF783NTR 4243444 ENCODE Processing Pipeline 5beeef7135e9f5251327dee9b9ae1a12 https://www.encodeproject.org/files/ENCFF507VHP/@@download/ENCFF507VHP.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF360FBE bed narrowPeak peaks ENCSR295GRB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF213-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF242ZAW 6615565 ENCODE Processing Pipeline f61e663c632fb978904ba923371f6fd6 https://www.encodeproject.org/files/ENCFF360FBE/@@download/ENCFF360FBE.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF400FLC bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human DNA False 2017-11-14 ENCODE 1 ENCFF581ZJL, ENCFF814UHO 7085731 ENCODE Processing Pipeline fb326ecec20c455e0db75b1b0834f938 https://www.encodeproject.org/files/ENCFF400FLC/@@download/ENCFF400FLC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF389XPF bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 5299369 ENCODE Processing Pipeline 54a53e5f971224cb57b7ca10cb9f0ac7 https://www.encodeproject.org/files/ENCFF389XPF/@@download/ENCFF389XPF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF125VLX bed narrowPeak peaks ENCSR680OFU ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF092PCB, ENCFF316UXC 5125963 ENCODE Processing Pipeline 4071c3422e701bacf8b5834edf5190d4 https://www.encodeproject.org/files/ENCFF125VLX/@@download/ENCFF125VLX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF734JFJ bed narrowPeak peaks ENCSR000BNA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF760RWX 2881795 ENCODE Processing Pipeline 3c6fbf1d9b9bb64f1619cb591ddc3eac https://www.encodeproject.org/files/ENCFF734JFJ/@@download/ENCFF734JFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF026WLK bed narrowPeak peaks ENCSR200CUA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HDGF-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF828KQX 6916711 ENCODE Processing Pipeline 709ae80b1f54ed141c4a37fed334ebb7 https://www.encodeproject.org/files/ENCFF026WLK/@@download/ENCFF026WLK.bed.gz hg19 released borderline replicate concordance ENCFF784BHQ bed narrowPeak peaks ENCSR000BPA ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF993IJH 6213589 ENCODE Processing Pipeline fa4df9b4f771ab42cb0fa07d0fcca532 https://www.encodeproject.org/files/ENCFF784BHQ/@@download/ENCFF784BHQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF346YEJ bed narrowPeak peaks ENCSR909HMT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297DWV 6998016 ENCODE Processing Pipeline a7134f578bab71923baf0e1490ef5a2f https://www.encodeproject.org/files/ENCFF346YEJ/@@download/ENCFF346YEJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF471EDO bed narrowPeak peaks ENCSR261EDU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MNT-human DNA False 2016-07-28 ENCODE 1 ENCFF207NEA, ENCFF449NNE 6397733 ENCODE Processing Pipeline 7d121d6e7631413064a897e119812a8d https://www.encodeproject.org/files/ENCFF471EDO/@@download/ENCFF471EDO.bed.gz hg19 released ENCFF774WWH bed narrowPeak peaks ENCSR313VZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FIP1L1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021UBI, ENCFF363VZX, ENCFF994SVB 5619349 ENCODE Processing Pipeline 370dd3a144b1926ea5dc3d55c9ad2750 https://www.encodeproject.org/files/ENCFF774WWH/@@download/ENCFF774WWH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF815GPU bed narrowPeak peaks ENCSR113GDB ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens EZH2-human DNA False 2017-12-14 ENCODE 1 ENCFF505ZSL, ENCFF708WIV 7028386 ENCODE Processing Pipeline d6534010d793507e92522781e0492530 https://www.encodeproject.org/files/ENCFF815GPU/@@download/ENCFF815GPU.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF080QIA bed narrowPeak peaks ENCSR330OEO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC2-human DNA False 2017-08-12 ENCODE 1 ENCFF432IXF, ENCFF602SNK, ENCFF620EZL 5961445 ENCODE Processing Pipeline 20bff0afdb2ea318f0f997bbaf9d0d9e https://www.encodeproject.org/files/ENCFF080QIA/@@download/ENCFF080QIA.bed.gz hg19 released ENCFF160DKY bed narrowPeak peaks ENCSR339JTP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM39-human DNA SDS formaldehyde False 2018-03-06 ENCODE 1 ENCFF217UCE, ENCFF278JXM, ENCFF825CNQ 6449099 ENCODE Processing Pipeline 93fb2090b82599ffb83b532afa808c55 https://www.encodeproject.org/files/ENCFF160DKY/@@download/ENCFF160DKY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF205BAR bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF232HND, ENCFF710NTS 5205295 ENCODE Processing Pipeline 0668bcb1f596df50e9193d8ba5c90e50 https://www.encodeproject.org/files/ENCFF205BAR/@@download/ENCFF205BAR.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF663ORW bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5124788 ENCODE Processing Pipeline 8684d01437d6b6e47679a749aacccb94 https://www.encodeproject.org/files/ENCFF663ORW/@@download/ENCFF663ORW.bed.gz hg19 released low read length ENCFF770GWM bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5247189 ENCODE Processing Pipeline ae86b2319905c3bbce4a66fa7affa0a3 https://www.encodeproject.org/files/ENCFF770GWM/@@download/ENCFF770GWM.bed.gz hg19 archived low read length ENCFF668CZT bed narrowPeak peaks ENCSR000BIR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF271AEZ, ENCFF356DXM 4827069 ENCODE Processing Pipeline bbc7011954414f04decf521a5b6dac20 https://www.encodeproject.org/files/ENCFF668CZT/@@download/ENCFF668CZT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF839WLX bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-10-31 ENCODE 1 ENCFF581ZJL, ENCFF607LWB 7182624 ENCODE Processing Pipeline 7cdf0e768ab4a89b9f8bb35087b49d87 https://www.encodeproject.org/files/ENCFF839WLX/@@download/ENCFF839WLX.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF322UFN bed narrowPeak peaks ENCSR254YRM ChIP-seq UBERON:0002107 liver tissue Homo sapiens CTCF-human DNA False 2017-04-14 ENCODE 1 ENCFF498EIA, ENCFF631FAS, ENCFF947OYN 4691621 ENCODE Processing Pipeline 17235ddc4779af39ef2599504b5ccb70 https://www.encodeproject.org/files/ENCFF322UFN/@@download/ENCFF322UFN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment experiment not submitted to GEO missing input control missing control alignments ENCFF001XQP bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMA 850780 John Stamatoyannopoulos, UW 4f73df136f2a0e067db84728d6033d59 https://www.encodeproject.org/files/ENCFF001XQP/@@download/ENCFF001XQP.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF015JHG bed narrowPeak peaks ENCSR000DTR ChIP-seq CL:0002252 epithelial cell of esophagus primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF145CAZ, ENCFF999PXI 4136561 ENCODE Processing Pipeline b722740c8432187aec3b4e6da26dbe36 https://www.encodeproject.org/files/ENCFF015JHG/@@download/ENCFF015JHG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth missing control alignments ENCFF987HTT bed narrowPeak peaks ENCSR447ZTA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF558-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF200VJD 6907703 ENCODE Processing Pipeline cb3d0d48bf6463a73e50df068272eebc https://www.encodeproject.org/files/ENCFF987HTT/@@download/ENCFF987HTT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF696VJM bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4522787 ENCODE Processing Pipeline cc61c87b1e26076a815a2c76000811a3 https://www.encodeproject.org/files/ENCFF696VJM/@@download/ENCFF696VJM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF431SLO bed narrowPeak peaks ENCSR819ATC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MYB-human DNA False 2014-07-07 ENCODE 1 ENCFF249XQG, ENCFF426WJH 4659702 ENCODE Processing Pipeline 447f5abf22caeb918000542e52d323e8 https://www.encodeproject.org/files/ENCFF431SLO/@@download/ENCFF431SLO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF739IDN bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4064192 ENCODE Processing Pipeline 10bc6a66f3210269046f7ffe893d1b3b https://www.encodeproject.org/files/ENCFF739IDN/@@download/ENCFF739IDN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF688TJX bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4209685 ENCODE Processing Pipeline 99e76d8e305893efffbd5686a4d47778 https://www.encodeproject.org/files/ENCFF688TJX/@@download/ENCFF688TJX.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF301EVY bed narrowPeak peaks ENCSR899BKM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF687-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF602MLF 6658442 ENCODE Processing Pipeline e8baf65a7b4eca3efdcb5c78b6c9fe45 https://www.encodeproject.org/files/ENCFF301EVY/@@download/ENCFF301EVY.bed.gz hg19 released ENCFF460AIN bed narrowPeak peaks ENCSR000EFM ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG 5820931 ENCODE Processing Pipeline 9da03b794dee6a2a7f582a91342996fa https://www.encodeproject.org/files/ENCFF460AIN/@@download/ENCFF460AIN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF527VLA bed narrowPeak peaks ENCSR632SIM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFHX2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF787ENP 7018720 ENCODE Processing Pipeline 85b942388f9ba5ba3c4d6bb0be09366e https://www.encodeproject.org/files/ENCFF527VLA/@@download/ENCFF527VLA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF959MXK bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF072HKU, ENCFF710NTS 5051372 ENCODE Processing Pipeline 0ad30b28ec7b893683aa702b3ec92aab https://www.encodeproject.org/files/ENCFF959MXK/@@download/ENCFF959MXK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF323MMZ bed narrowPeak peaks ENCSR000ECF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF724ITL 4398850 ENCODE Processing Pipeline d9eb88f122cfd3a49fb2c63bc6e64e1c https://www.encodeproject.org/files/ENCFF323MMZ/@@download/ENCFF323MMZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF438RUW bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human DNA False 2016-06-14 ENCODE 1 ENCFF042HRP, ENCFF581ZJL 7190369 ENCODE Processing Pipeline 29979f3a75ae2c25cf3e69c12045ab0c https://www.encodeproject.org/files/ENCFF438RUW/@@download/ENCFF438RUW.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF882BWU bed narrowPeak peaks ENCSR513UQG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF228QGC, ENCFF880YHS 4766514 ENCODE Processing Pipeline 9a3544f739c36347999043fb5562c30d https://www.encodeproject.org/files/ENCFF882BWU/@@download/ENCFF882BWU.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption mismatched file status ENCFF568MUB bed narrowPeak peaks ENCSR760AAY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM12-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF027SPN 5827897 ENCODE Processing Pipeline 65bacefa9942b93b50dd572719af0a62 https://www.encodeproject.org/files/ENCFF568MUB/@@download/ENCFF568MUB.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF885ZDD bed narrowPeak peaks ENCSR362CPB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC1-human DNA False 2017-07-27 ENCODE 1 ENCFF113NSD, ENCFF165PBN, ENCFF705NOL 6736392 ENCODE Processing Pipeline 0a1d4c05594af25cdd51df5672a46cce https://www.encodeproject.org/files/ENCFF885ZDD/@@download/ENCFF885ZDD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO ENCFF655JXN bed narrowPeak peaks ENCSR000DNM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF629CYS 3243986 ENCODE Processing Pipeline 0dc3d0dfd191faaf756cd14b828a8fdf https://www.encodeproject.org/files/ENCFF655JXN/@@download/ENCFF655JXN.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF417EBM bed narrowPeak peaks ENCSR000BJC ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF665XOJ 3096435 ENCODE Processing Pipeline 4b61c33658f64cef00a3973ea2771d60 https://www.encodeproject.org/files/ENCFF417EBM/@@download/ENCFF417EBM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF435TEK bed narrowPeak peaks ENCSR669GUM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF404-human DNA formaldehyde False 2017-02-13 ENCODE 1 ENCFF863GDL 6236120 ENCODE Processing Pipeline 183cf762326eba5c2fd920ddab40c7f3 https://www.encodeproject.org/files/ENCFF435TEK/@@download/ENCFF435TEK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF933RNJ bed narrowPeak peaks ENCSR906PCS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF223-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF594YRH 6614109 ENCODE Processing Pipeline d7a27c64ad7bc2439c1bc834ab069467 https://www.encodeproject.org/files/ENCFF933RNJ/@@download/ENCFF933RNJ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF671JOB bed narrowPeak peaks ENCSR858FAN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF621-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF905CTJ 6705629 ENCODE Processing Pipeline 3c7008d194e3637c33653463bf1dba54 https://www.encodeproject.org/files/ENCFF671JOB/@@download/ENCFF671JOB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF095ZGW bed narrowPeak peaks ENCSR567XAM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF473-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF098YMN, ENCFF182WHU 6981425 ENCODE Processing Pipeline 82f131d21e9bc977ab77c59e7bfcfd2f https://www.encodeproject.org/files/ENCFF095ZGW/@@download/ENCFF095ZGW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF321GPP bed narrowPeak peaks ENCSR676ZEF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF398-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF182WHU, ENCFF529LRA 7174543 ENCODE Processing Pipeline 24860e71d825e8d6c6dd7ae46bb132d8 https://www.encodeproject.org/files/ENCFF321GPP/@@download/ENCFF321GPP.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF477RJI bed narrowPeak peaks ENCSR751CJG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CHD4-human DNA False 2016-11-23 ENCODE 1 ENCFF602SNK, ENCFF620EZL, ENCFF894WEU 6787883 ENCODE Processing Pipeline 088e00e370807953cee4a5eb25cc6fa5 https://www.encodeproject.org/files/ENCFF477RJI/@@download/ENCFF477RJI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF816UIF bed narrowPeak peaks ENCSR000BJL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF967BLL 4640270 ENCODE Processing Pipeline 239a09275391130d6fec1cb7bc0a9e9b https://www.encodeproject.org/files/ENCFF816UIF/@@download/ENCFF816UIF.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF012KYI bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 6781218 ENCODE Processing Pipeline cacd1d6ef9b917be0adc3681cc09c9e2 https://www.encodeproject.org/files/ENCFF012KYI/@@download/ENCFF012KYI.bed.gz hg19 released mild to moderate bottlenecking ENCFF528VWM bed narrowPeak peaks ENCSR663ZZZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MNT-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG 6888367 ENCODE Processing Pipeline 90a1f1092f89675bc82555319201eff4 https://www.encodeproject.org/files/ENCFF528VWM/@@download/ENCFF528VWM.bed.gz hg19 archived mild to moderate bottlenecking ENCFF735EGA bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF965SIW 6692518 ENCODE Processing Pipeline 6a302f9366a47443547a372527ca43ee https://www.encodeproject.org/files/ENCFF735EGA/@@download/ENCFF735EGA.bed.gz hg19 released file validation error, mild to moderate bottlenecking, antibody characterized with exemption mismatched file status ENCFF904GCW bed narrowPeak peaks ENCSR000BQR ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens bisphenol A 100 nM 1 hour ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF277EKP, ENCFF670BCP, ENCFF902HRT 3661889 ENCODE Processing Pipeline a645018a151b9243fa311099318e11a6 https://www.encodeproject.org/files/ENCFF904GCW/@@download/ENCFF904GCW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF583KAL bed narrowPeak peaks ENCSR631WAA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB17-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF823IRF 6953323 ENCODE Processing Pipeline 2f1c9cf56b06d66a9f76a9d8929a5934 https://www.encodeproject.org/files/ENCFF583KAL/@@download/ENCFF583KAL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF558ONH bed narrowPeak peaks ENCSR608WPS ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF245TKJ, ENCFF937EBV 5355301 ENCODE Processing Pipeline a2c75be92a1492a2e99624038259d179 https://www.encodeproject.org/files/ENCFF558ONH/@@download/ENCFF558ONH.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF436YZZ bed narrowPeak peaks ENCSR178QVJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF274-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF781CQH 6535730 ENCODE Processing Pipeline 33179ca061d8479c9a5ffe0c69dd4183 https://www.encodeproject.org/files/ENCFF436YZZ/@@download/ENCFF436YZZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF915QWH bed narrowPeak peaks ENCSR382GSF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-INSM2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF438VAZ 6798437 ENCODE Processing Pipeline c6237a88719dfb367ac219465d6e5ad8 https://www.encodeproject.org/files/ENCFF915QWH/@@download/ENCFF915QWH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF696JKX bed narrowPeak peaks ENCSR375VXU ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF055UXI, ENCFF555CXI 6384873 ENCODE Processing Pipeline 8604eaccdc097ac0640b35650ba24f0e https://www.encodeproject.org/files/ENCFF696JKX/@@download/ENCFF696JKX.bed.gz hg19 released antibody characterized with exemption ENCFF878DLA bed narrowPeak peaks ENCSR514VYD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2F1-human DNA False 2017-04-14 ENCODE 1 ENCFF342HIU, ENCFF901CND 6779574 ENCODE Processing Pipeline 7234d3b4a0de8c0f2e2bf90b6035ae20 https://www.encodeproject.org/files/ENCFF878DLA/@@download/ENCFF878DLA.bed.gz hg19 released mild to moderate bottlenecking ENCFF977LDX bed narrowPeak peaks ENCSR298QUH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MZF1-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF320VTA 6804836 ENCODE Processing Pipeline af8402325f1ccffd68c521e6e22921ed https://www.encodeproject.org/files/ENCFF977LDX/@@download/ENCFF977LDX.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF270TNU bed narrowPeak peaks ENCSR253CKN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN21-human DNA formaldehyde False 2017-04-05 ENCODE 1 ENCFF548QML 7243691 ENCODE Processing Pipeline 6cd5cf21fa851e6cd434fc9e866c764f https://www.encodeproject.org/files/ENCFF270TNU/@@download/ENCFF270TNU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF627HIA bed narrowPeak peaks ENCSR996FYT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF202-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF379HWR 6575790 ENCODE Processing Pipeline f6e9ceefd857326956cdf8771cd1b052 https://www.encodeproject.org/files/ENCFF627HIA/@@download/ENCFF627HIA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF409LKX bed narrowPeak peaks ENCSR029IBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARNT-human DNA False 2017-01-31 ENCODE 1 ENCFF221MEC, ENCFF449NNE 5893692 ENCODE Processing Pipeline 269b18f035b2f437d5a86ad57d2d73ba https://www.encodeproject.org/files/ENCFF409LKX/@@download/ENCFF409LKX.bed.gz hg19 released borderline replicate concordance ENCFF781CDG bed narrowPeak peaks ENCSR167XFW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF544-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF182WHU, ENCFF619MNG 6521915 ENCODE Processing Pipeline dc36a4261736582707dd885f10613319 https://www.encodeproject.org/files/ENCFF781CDG/@@download/ENCFF781CDG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF827IXZ bed narrowPeak peaks ENCSR000EDQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF038DTA, ENCFF107SKX 5588175 ENCODE Processing Pipeline f69a17eb084307428fc3d15a8b069dcb https://www.encodeproject.org/files/ENCFF827IXZ/@@download/ENCFF827IXZ.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF415VFS bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF177GKX, ENCFF908KFH 5026604 ENCODE Processing Pipeline 8e5f7c10cc85b739677753af635c01be https://www.encodeproject.org/files/ENCFF415VFS/@@download/ENCFF415VFS.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF308RFY bed narrowPeak peaks ENCSR342THD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA False 2017-04-14 ENCODE 1 ENCFF816IGR, ENCFF901CND 5961135 ENCODE Processing Pipeline 81d93d6c05d0232c271be38ec82ff8fa https://www.encodeproject.org/files/ENCFF308RFY/@@download/ENCFF308RFY.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption ENCFF322TVZ bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human DNA False 2017-05-17 ENCODE 1 ENCFF155TVA, ENCFF160VXC 7093766 ENCODE Processing Pipeline ab63538dc764ed73d698c6004ed4af4a https://www.encodeproject.org/files/ENCFF322TVZ/@@download/ENCFF322TVZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF646CMN bed narrowPeak peaks ENCSR359LOD ChIP-seq EFO:0002074 PC-3 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF112OEB, ENCFF186LRX, ENCFF476MIY 6095639 ENCODE Processing Pipeline 7ab32b2460247a09c348e205d542ed9a https://www.encodeproject.org/files/ENCFF646CMN/@@download/ENCFF646CMN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF601KTD bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA False 2018-01-30 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF842XJL 6898463 ENCODE Processing Pipeline 3c127fea89d3f7d81af3ae4f316cd256 https://www.encodeproject.org/files/ENCFF601KTD/@@download/ENCFF601KTD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF333AFS bed narrowPeak peaks ENCSR906PEI ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens SP1-human DNA False 2017-05-18 ENCODE 1 ENCFF040GAR, ENCFF180CLD, ENCFF760DHW 6612799 ENCODE Processing Pipeline 08a070c5b1ce4adbd72f9d307a919328 https://www.encodeproject.org/files/ENCFF333AFS/@@download/ENCFF333AFS.bed.gz hg19 released ENCFF935FTJ bed narrowPeak peaks ENCSR756ZKG ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF144FLB, ENCFF574DLY, ENCFF957IJL 6335023 ENCODE Processing Pipeline 71543bcc95c3ceee1fbd1f6500c40145 https://www.encodeproject.org/files/ENCFF935FTJ/@@download/ENCFF935FTJ.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF924ENQ bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4790813 ENCODE Processing Pipeline 1796f8c5ec325de31bd279836a44dc3e https://www.encodeproject.org/files/ENCFF924ENQ/@@download/ENCFF924ENQ.bed.gz hg19 released low read length, low read depth ENCFF349DOV bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4973568 ENCODE Processing Pipeline 5207521ced5ffdc41c59ac3c68d6ba0a https://www.encodeproject.org/files/ENCFF349DOV/@@download/ENCFF349DOV.bed.gz hg19 archived low read length, low read depth ENCFF809LWB bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF413UYN, ENCFF834TUP 7045721 ENCODE Processing Pipeline c6282301855b3803875411aa81deaee3 https://www.encodeproject.org/files/ENCFF809LWB/@@download/ENCFF809LWB.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF782VWT bed narrowPeak peaks ENCSR046HGP ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens EZH2-human DNA False 2017-11-18 ENCODE 1 ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT 6454259 ENCODE Processing Pipeline 519bf4937d6fa21d96d52ddd303d57db https://www.encodeproject.org/files/ENCFF782VWT/@@download/ENCFF782VWT.bed.gz hg19 released mixed run types, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF665VIR bed narrowPeak peaks ENCSR091CSG ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF136UBM, ENCFF820VHQ 6470916 ENCODE Processing Pipeline 953a6827396f2a0f851bab75775a42ba https://www.encodeproject.org/files/ENCFF665VIR/@@download/ENCFF665VIR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF485PHV bed narrowPeak peaks ENCSR000DZU ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF270QLE, ENCFF545DZO 4013789 ENCODE Processing Pipeline c37fe4f4f26f43a140fc952141d07512 https://www.encodeproject.org/files/ENCFF485PHV/@@download/ENCFF485PHV.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF869LKG bed narrowPeak peaks ENCSR961PPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA False 2016-10-26 ENCODE 1 ENCFF579YLW, ENCFF592WAL, ENCFF901CND 6770534 ENCODE Processing Pipeline d2fee1cbbf013603b8adb506173ad86b https://www.encodeproject.org/files/ENCFF869LKG/@@download/ENCFF869LKG.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF516NKL bed narrowPeak peaks ENCSR045YHA ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens EZH2-human DNA False 2017-11-10 ENCODE 1 ENCFF139WHV, ENCFF269ZDG 6366413 ENCODE Processing Pipeline cd140be4cfe587fa8e7727b2881e4da8 https://www.encodeproject.org/files/ENCFF516NKL/@@download/ENCFF516NKL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF047WZX bed narrowPeak peaks ENCSR000EUM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF947RUP 3303727 ENCODE Processing Pipeline a7732936a2aeded2b9bfec77defe7ab5 https://www.encodeproject.org/files/ENCFF047WZX/@@download/ENCFF047WZX.bed.gz hg19 released control insufficient read depth, insufficient read depth, insufficient read length ENCFF751QTK bed narrowPeak peaks ENCSR460MBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB20-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF948BJB 7213565 ENCODE Processing Pipeline aa7108420155617706ea479effbb306b https://www.encodeproject.org/files/ENCFF751QTK/@@download/ENCFF751QTK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF351PSH bed narrowPeak peaks ENCSR019KPC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PLRG1-human DNA False 2016-10-31 ENCODE 1 ENCFF104TRE, ENCFF449NNE 6112836 ENCODE Processing Pipeline 9ca899c74a37c1ca966d71c8f42c4d9a https://www.encodeproject.org/files/ENCFF351PSH/@@download/ENCFF351PSH.bed.gz hg19 released file validation error, borderline replicate concordance mismatched file status ENCFF430AWA bed narrowPeak peaks ENCSR543DUC ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2017-03-20 ENCODE 1 ENCFF381HBZ, ENCFF616FYK 4760938 ENCODE Processing Pipeline 7cf1f5d003f47cfb7061312d9573f22b https://www.encodeproject.org/files/ENCFF430AWA/@@download/ENCFF430AWA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF723ESB bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human DNA False 2016-04-22 ENCODE 1 ENCFF475POO, ENCFF581ZJL 6989631 ENCODE Processing Pipeline c5a9c9206e878fe8941bc3ea139ce753 https://www.encodeproject.org/files/ENCFF723ESB/@@download/ENCFF723ESB.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF161GSW bed narrowPeak peaks ENCSR691CPM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF188GWO, ENCFF268VSP 6381799 ENCODE Processing Pipeline 10ed9f8ad9018f81076149a0b86f3700 https://www.encodeproject.org/files/ENCFF161GSW/@@download/ENCFF161GSW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF738IWJ bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 4325389 ENCODE Processing Pipeline 2eae6944463cabec0764fddb97531e99 https://www.encodeproject.org/files/ENCFF738IWJ/@@download/ENCFF738IWJ.bed.gz hg19 released low read length, low read depth ENCFF766CME bed narrowPeak peaks ENCSR529JYA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF863VMN, ENCFF871YZO 4504257 ENCODE Processing Pipeline d857c14b63ab37c7c550af1f62447f60 https://www.encodeproject.org/files/ENCFF766CME/@@download/ENCFF766CME.bed.gz hg19 archived low read length, low read depth ENCFF279FQM bed narrowPeak peaks ENCSR415MOW ChIP-seq UBERON:0001114 right lobe of liver tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF394VHK, ENCFF571CAV 6819143 ENCODE Processing Pipeline 3fca8755f62a14ee7b35c723276c3ac5 https://www.encodeproject.org/files/ENCFF279FQM/@@download/ENCFF279FQM.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF294TXO bed narrowPeak peaks ENCSR353DFU ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-04-04 ENCODE 1 ENCFF386INF, ENCFF629CBG 6152257 ENCODE Processing Pipeline 3c3f3728aaf8c7ab0d4e3aa350b057dd https://www.encodeproject.org/files/ENCFF294TXO/@@download/ENCFF294TXO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF864HFH bed narrowPeak peaks ENCSR431EHE ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF171WZW, ENCFF460MTF 6209418 ENCODE Processing Pipeline 9634de85e08081425e44f097fff502db https://www.encodeproject.org/files/ENCFF864HFH/@@download/ENCFF864HFH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF235LYZ bed narrowPeak peaks ENCSR376FMN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EHMT2-human DNA False 2017-08-12 ENCODE 1 ENCFF036MJJ, ENCFF165PBN, ENCFF705NOL 6754794 ENCODE Processing Pipeline b59ff383dd10cdb514272db7821d927a https://www.encodeproject.org/files/ENCFF235LYZ/@@download/ENCFF235LYZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF639ZSQ bed narrowPeak peaks ENCSR000DON ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF425RUE, ENCFF474MOK 5366032 ENCODE Processing Pipeline 8022af1f733528645b2cd90cb379d4d8 https://www.encodeproject.org/files/ENCFF639ZSQ/@@download/ENCFF639ZSQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, duplicate lane review missing control alignments ENCFF621KDY bed narrowPeak peaks ENCSR897RVP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF514-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF177TLU 6303236 ENCODE Processing Pipeline 7bea6b17c6d1eb617980f0bbc8917eb9 https://www.encodeproject.org/files/ENCFF621KDY/@@download/ENCFF621KDY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF608WWL bed narrowPeak peaks ENCSR724FCJ ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF481UTQ, ENCFF910PEO 5475321 ENCODE Processing Pipeline f69de8fd33915da4d9cff3374f187824 https://www.encodeproject.org/files/ENCFF608WWL/@@download/ENCFF608WWL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF108GJC bed narrowPeak peaks ENCSR289VTP ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF671AZH, ENCFF856RNU 5734887 ENCODE Processing Pipeline 59a65498fe1a618154eec162abc6011e https://www.encodeproject.org/files/ENCFF108GJC/@@download/ENCFF108GJC.bed.gz hg19 released antibody characterized with exemption ENCFF480TTE bed narrowPeak peaks ENCSR801SWX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens TARDBP-human DNA False 2017-02-01 ENCODE 1 ENCFF583FAG, ENCFF822IOM 6210987 ENCODE Processing Pipeline 374e78559a34de67d23cc29e6508a582 https://www.encodeproject.org/files/ENCFF480TTE/@@download/ENCFF480TTE.bed.gz hg19 released ENCFF640NJO bed narrowPeak peaks ENCSR407BEZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZHX2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF049HWT, ENCFF162VTZ, ENCFF632RLI 5898427 ENCODE Processing Pipeline 71586927917965273b6ddd08788748b3 https://www.encodeproject.org/files/ENCFF640NJO/@@download/ENCFF640NJO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF016QUV bed narrowPeak peaks ENCSR412QBS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TARDBP-human DNA False 2016-04-22 ENCODE 1 ENCFF241VLD, ENCFF941TZZ 6786003 ENCODE Processing Pipeline d41e5e922682d5852cd74c44b53512b4 https://www.encodeproject.org/files/ENCFF016QUV/@@download/ENCFF016QUV.bed.gz hg19 released ENCFF468WHP bed narrowPeak peaks ENCSR173AIR ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF027EKQ, ENCFF779SGY 6923657 ENCODE Processing Pipeline c95d32d0f84b0fa3da94d6a881bbbd2c https://www.encodeproject.org/files/ENCFF468WHP/@@download/ENCFF468WHP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF001XMP bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GYW 946180 John Stamatoyannopoulos, UW cc1455d47dca75372ae98ed04074df75 https://www.encodeproject.org/files/ENCFF001XMP/@@download/ENCFF001XMP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF863FFV bed narrowPeak peaks ENCSR000DQD ChIP-seq EFO:0005725 BE2C cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF054LVG, ENCFF170UJD 4585271 ENCODE Processing Pipeline 267dfc560c68f89a60b9602a08a0dd5c https://www.encodeproject.org/files/ENCFF863FFV/@@download/ENCFF863FFV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF497HNH bed narrowPeak peaks ENCSR887LYD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMARCC2-human DNA False 2017-06-26 ENCODE 1 ENCFF124FTL, ENCFF172XZA, ENCFF843IXX 6736532 ENCODE Processing Pipeline b5effc0c1f76cf29f1eb1f2cc4de4286 https://www.encodeproject.org/files/ENCFF497HNH/@@download/ENCFF497HNH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF438DXI bed narrowPeak peaks ENCSR000DMS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF628LRK 5404774 ENCODE Processing Pipeline 8d9826e9efce14d6f47062e66584c858 https://www.encodeproject.org/files/ENCFF438DXI/@@download/ENCFF438DXI.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF817LEL bed narrowPeak peaks ENCSR219MKK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens DEK-human DNA False 2016-04-21 ENCODE 1 ENCFF316UXC, ENCFF865GUF 5115154 ENCODE Processing Pipeline 1e1318c342dc0df66ef9a4674cd2663e https://www.encodeproject.org/files/ENCFF817LEL/@@download/ENCFF817LEL.bed.gz hg19 released low read length, low read depth ENCFF004ODG bed narrowPeak peaks ENCSR194KWL ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF704-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF223KZR 6279243 ENCODE Processing Pipeline 27c3fe7bbaba208d1feab41fda6c34d9 https://www.encodeproject.org/files/ENCFF004ODG/@@download/ENCFF004ODG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF047EYM bed narrowPeak peaks ENCSR776MDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF577-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF601YGX 6350375 ENCODE Processing Pipeline 8abe941c59cf5b7cf216ee1a242b1ed7 https://www.encodeproject.org/files/ENCFF047EYM/@@download/ENCFF047EYM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF252YMA bed narrowPeak peaks ENCSR266XFE ChIP-seq UBERON:0002106 spleen tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF247KXK, ENCFF486FYK 6529511 ENCODE Processing Pipeline a7c8a47b0e7557ae768bef002cb63b5a https://www.encodeproject.org/files/ENCFF252YMA/@@download/ENCFF252YMA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF434NPI bed narrowPeak peaks ENCSR391KQC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA3-human DNA False 2016-06-23 ENCODE 1 ENCFF473JXX, ENCFF583FAG 5959233 ENCODE Processing Pipeline 351e46fb7b1dfcaff57caf3fe6d3ffa7 https://www.encodeproject.org/files/ENCFF434NPI/@@download/ENCFF434NPI.bed.gz hg19 released borderline replicate concordance ENCFF744ESZ bed narrowPeak peaks ENCSR705ASR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN23-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF677ERR 6760818 ENCODE Processing Pipeline b6b71f6bee8ecd4cbb58831822f80802 https://www.encodeproject.org/files/ENCFF744ESZ/@@download/ENCFF744ESZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF551KOG bed narrowPeak peaks ENCSR000HPG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens SMC3-human DNA False 2016-10-26 ENCODE 1 ENCFF140IKC, ENCFF880YHS 5219246 ENCODE Processing Pipeline 9c2746280f4a60fc37a7786596929e92 https://www.encodeproject.org/files/ENCFF551KOG/@@download/ENCFF551KOG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF154VUH bed narrowPeak peaks ENCSR468IJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP7-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF423BHL 7099449 ENCODE Processing Pipeline c9dc52983e3ef962a9e31b7f074309d7 https://www.encodeproject.org/files/ENCFF154VUH/@@download/ENCFF154VUH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF618CLL bed narrowPeak peaks ENCSR009MBP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HSF1-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF942MNR 4392046 ENCODE Processing Pipeline eb0e1c79aecca23f1c1ffbcabfb8c607 https://www.encodeproject.org/files/ENCFF618CLL/@@download/ENCFF618CLL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF890YMI bed narrowPeak peaks ENCSR328SUD ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF335-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF842YIW 7177854 ENCODE Processing Pipeline 5a61cb8e191b9b058a22a78e6ac7bacf https://www.encodeproject.org/files/ENCFF890YMI/@@download/ENCFF890YMI.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF358WEO bed narrowPeak peaks ENCSR234HEM ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF224VJS, ENCFF452PDJ 5904460 ENCODE Processing Pipeline 8fedf1fed21537f0ab034742414c07aa https://www.encodeproject.org/files/ENCFF358WEO/@@download/ENCFF358WEO.bed.gz hg19 released antibody characterized with exemption ENCFF943SEQ bed narrowPeak peaks ENCSR535DIA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF617GJF 7143444 ENCODE Processing Pipeline 74daaecbd6352e4547c3e351034faa73 https://www.encodeproject.org/files/ENCFF943SEQ/@@download/ENCFF943SEQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF511ZHC bed narrowPeak peaks ENCSR318LVG ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB40-human DNA False 2016-09-20 ENCODE 1 ENCFF447KVS, ENCFF712AJA, ENCFF823USR 7155271 ENCODE Processing Pipeline 8c5428df4a3d639d84458f15c9d9274d https://www.encodeproject.org/files/ENCFF511ZHC/@@download/ENCFF511ZHC.bed.gz hg19 released file validation error, mild to moderate bottlenecking mismatched file status ENCFF481CBF bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA False 2017-11-14 ENCODE 1 ENCFF064TLT, ENCFF581ZJL 6923903 ENCODE Processing Pipeline bb2ded9a9d6cfd8870342e0797f3babb https://www.encodeproject.org/files/ENCFF481CBF/@@download/ENCFF481CBF.bed.gz hg19 released experiment not submitted to GEO ENCFF894EBL bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4754374 ENCODE Processing Pipeline f41e8db986ad83789c943f560b85abbf https://www.encodeproject.org/files/ENCFF894EBL/@@download/ENCFF894EBL.bed.gz hg19 released low read length ENCFF807ESQ bed narrowPeak peaks ENCSR514VAY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HCFC1-human DNA False 2014-07-07 ENCODE 1 ENCFF370WJQ, ENCFF426WJH 4977549 ENCODE Processing Pipeline ae6242bd8eff5d4f51e1ba2d55c776e3 https://www.encodeproject.org/files/ENCFF807ESQ/@@download/ENCFF807ESQ.bed.gz hg19 archived low read length ENCFF468YQB bed narrowPeak peaks ENCSR946ZLI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF13-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF542YIP 6446867 ENCODE Processing Pipeline f4e6540bc9c6f00a11e787faea37cc5d https://www.encodeproject.org/files/ENCFF468YQB/@@download/ENCFF468YQB.bed.gz hg19 released low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF516CRP bed narrowPeak peaks ENCSR066EBK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF867YPG 6692903 ENCODE Processing Pipeline 4cd0006be07720f9547a251755293e61 https://www.encodeproject.org/files/ENCFF516CRP/@@download/ENCFF516CRP.bed.gz hg19 released ENCFF902RHR bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human DNA False 2016-10-14 ENCODE 1 ENCFF158LEE, ENCFF581ZJL 7166913 ENCODE Processing Pipeline c79d8243bfba48199c241beffa9d9377 https://www.encodeproject.org/files/ENCFF902RHR/@@download/ENCFF902RHR.bed.gz hg19 released ENCFF474JRH bed narrowPeak peaks ENCSR047BUZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF2-human DNA False 2016-07-08 ENCODE 1 ENCFF449NNE, ENCFF572HWU 6300168 ENCODE Processing Pipeline b957779de989bcd5ce86ea5e3d87b7c6 https://www.encodeproject.org/files/ENCFF474JRH/@@download/ENCFF474JRH.bed.gz hg19 released borderline replicate concordance ENCFF385GVM bed narrowPeak peaks ENCSR391IWM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens KDM1A-human DNA False 2016-11-24 ENCODE 1 ENCFF035LOI, ENCFF602SNK, ENCFF620EZL 5640136 ENCODE Processing Pipeline 258a05d2711185bbaddd422ce470a14e https://www.encodeproject.org/files/ENCFF385GVM/@@download/ENCFF385GVM.bed.gz hg19 released borderline replicate concordance ENCFF505NSP bed narrowPeak peaks ENCSR000BKJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF656BEN 4996117 ENCODE Processing Pipeline 51117687abf0e9a6e9234feeffb4ecc2 https://www.encodeproject.org/files/ENCFF505NSP/@@download/ENCFF505NSP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF627DPA bed narrowPeak peaks ENCSR155VDK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB11-human DNA False 2016-04-25 ENCODE 1 ENCFF742ATC, ENCFF853BBD 5535207 ENCODE Processing Pipeline e4cf89185ac34a2b95c92cdd4cb684b4 https://www.encodeproject.org/files/ENCFF627DPA/@@download/ENCFF627DPA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF698USR bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 4565423 ENCODE Processing Pipeline 5bee42383636d4133d47309fe321a74f https://www.encodeproject.org/files/ENCFF698USR/@@download/ENCFF698USR.bed.gz hg19 released low read length, borderline replicate concordance, low read depth ENCFF738BNS bed narrowPeak peaks ENCSR887MXT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZHX1-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF917NVM 4816349 ENCODE Processing Pipeline e4a1694293dd0c18eb7a21fbff1ca973 https://www.encodeproject.org/files/ENCFF738BNS/@@download/ENCFF738BNS.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth ENCFF605EQP bed narrowPeak peaks ENCSR000BIV ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF714CGS 3834254 ENCODE Processing Pipeline 7ce30a006c9a6d57e54f6cb2214e3542 https://www.encodeproject.org/files/ENCFF605EQP/@@download/ENCFF605EQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF558TFD bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 4090890 ENCODE Processing Pipeline d725778059cebd7da466c1f2021370c8 https://www.encodeproject.org/files/ENCFF558TFD/@@download/ENCFF558TFD.bed.gz hg19 released low read length, low read depth ENCFF098TYI bed narrowPeak peaks ENCSR771GTF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SUZ12-human DNA False 2014-07-07 ENCODE 1 ENCFF313JJC, ENCFF863VMN 4266140 ENCODE Processing Pipeline b2fe26d3fe2678b2d781d8c4e9690968 https://www.encodeproject.org/files/ENCFF098TYI/@@download/ENCFF098TYI.bed.gz hg19 archived low read length, low read depth ENCFF327ANX bed narrowPeak peaks ENCSR199WXF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EED-human DNA False 2016-03-30 ENCODE 1 ENCFF437VCI, ENCFF935ZWS 6627642 ENCODE Processing Pipeline 8c9308a316f7f6ca9e4a33067b11c5d4 https://www.encodeproject.org/files/ENCFF327ANX/@@download/ENCFF327ANX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF249ESZ bed narrowPeak peaks ENCSR707IUN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens NFE2L2-human DNA False 2016-08-31 ENCODE 1 ENCFF316UXC, ENCFF451LLN 4993141 ENCODE Processing Pipeline 36922ee71029e462331ad1f033edf569 https://www.encodeproject.org/files/ENCFF249ESZ/@@download/ENCFF249ESZ.bed.gz hg19 released low read length, low read depth ENCFF313GGY bed narrowPeak peaks ENCSR752NDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF003ABO, ENCFF449NNE, ENCFF999EQI 6804060 ENCODE Processing Pipeline 9813556719a3b8f9ebd4afce29d0dc75 https://www.encodeproject.org/files/ENCFF313GGY/@@download/ENCFF313GGY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF300UJN bed narrowPeak peaks ENCSR799WDT ChIP-seq UBERON:0001211 Peyer's patch tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF112QNF, ENCFF714MWU 6414247 ENCODE Processing Pipeline 16579d4b9d4924e23c1e50d246a8f24f https://www.encodeproject.org/files/ENCFF300UJN/@@download/ENCFF300UJN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF256QBB bed narrowPeak peaks ENCSR000DZN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF119SGJ, ENCFF420MOQ 3988271 ENCODE Processing Pipeline cf3777546d0abfe725a842aadb87a1ef https://www.encodeproject.org/files/ENCFF256QBB/@@download/ENCFF256QBB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF035VDP bed narrowPeak peaks ENCSR801GJU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CBX2-human DNA False 2018-02-26 ENCODE 1 ENCFF165PBN, ENCFF463DEV, ENCFF705NOL 6736613 ENCODE Processing Pipeline d0c79d6e92adc86b08e9411b0de13847 https://www.encodeproject.org/files/ENCFF035VDP/@@download/ENCFF035VDP.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF869BQK bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human DNA False 2016-08-24 ENCODE 1 ENCFF419SJQ, ENCFF810SIO 6589214 ENCODE Processing Pipeline b384399b73a3f804a294944539e1d43e https://www.encodeproject.org/files/ENCFF869BQK/@@download/ENCFF869BQK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization ENCFF302RJE bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human DNA False 2017-05-18 ENCODE 1 ENCFF160VXC, ENCFF593YDQ 6620058 ENCODE Processing Pipeline c1eca67e5d636b2e1ffce3d0369a48d8 https://www.encodeproject.org/files/ENCFF302RJE/@@download/ENCFF302RJE.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF735AUV bed narrowPeak peaks ENCSR892QHR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM6-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF283OJW 6972072 ENCODE Processing Pipeline 30c28ad8dbc170455676230b350d1d81 https://www.encodeproject.org/files/ENCFF735AUV/@@download/ENCFF735AUV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF003FGN bed narrowPeak peaks ENCSR523XCR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RNF2-human DNA False 2016-06-23 ENCODE 1 ENCFF449NNE, ENCFF891VNH 6816934 ENCODE Processing Pipeline ba694247aa21d539c265c37fcb19bfc5 https://www.encodeproject.org/files/ENCFF003FGN/@@download/ENCFF003FGN.bed.gz hg19 released low read depth ENCFF222SAV bed narrowPeak peaks ENCSR075FNZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF622-human DNA False 2017-11-13 ENCODE 1 ENCFF592WAL, ENCFF628YUZ, ENCFF901CND 6730092 ENCODE Processing Pipeline 1f32b4b191ac76066f3a6217e6ed7df4 https://www.encodeproject.org/files/ENCFF222SAV/@@download/ENCFF222SAV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms experiment not submitted to GEO ENCFF427PNP bed narrowPeak peaks ENCSR000BTF ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens REST-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF027GJA, ENCFF880DIZ 5377648 ENCODE Processing Pipeline 8ead2387144ed550b5e379831425b0f0 https://www.encodeproject.org/files/ENCFF427PNP/@@download/ENCFF427PNP.bed.gz hg19 released low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF319WWL bed narrowPeak peaks ENCSR445PDR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GFI1B-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF181SRH 6555388 ENCODE Processing Pipeline dc1fe8eceb77245781e582080549d3ad https://www.encodeproject.org/files/ENCFF319WWL/@@download/ENCFF319WWL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF001XLR bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GVW 971215 John Stamatoyannopoulos, UW 1eb3db60b2fad91ea550972dd9236397 https://www.encodeproject.org/files/ENCFF001XLR/@@download/ENCFF001XLR.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF738FKM bed narrowPeak peaks ENCSR000DPG ChIP-seq NTR:0000478 AG04449 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF083JSC, ENCFF647YII 2224631 ENCODE Processing Pipeline f94b8b4360fdbb9c8dbeb158af2f9890 https://www.encodeproject.org/files/ENCFF738FKM/@@download/ENCFF738FKM.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF791GAM bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA False 2016-03-02 ENCODE 1 ENCFF335IPE, ENCFF729BKM 5988481 ENCODE Processing Pipeline 99ecd27acaeac0e97bc7a7718227b136 https://www.encodeproject.org/files/ENCFF791GAM/@@download/ENCFF791GAM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity ENCFF814OZQ bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF607MTM, ENCFF834TUP 6965642 ENCODE Processing Pipeline 0718b01612a32df7f0c0beace60bd8e5 https://www.encodeproject.org/files/ENCFF814OZQ/@@download/ENCFF814OZQ.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity mismatched file status, experiment not submitted to GEO partially characterized antibody ENCFF428HHR bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2016-06-14 ENCODE 1 ENCFF208HMF, ENCFF581ZJL 6312651 ENCODE Processing Pipeline 7b8c9af1b060b40e547da91d419384f4 https://www.encodeproject.org/files/ENCFF428HHR/@@download/ENCFF428HHR.bed.gz hg19 released low read depth ENCFF355FJN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4271462 ENCODE Processing Pipeline dca743565f99bebc0a1da12f168a6062 https://www.encodeproject.org/files/ENCFF355FJN/@@download/ENCFF355FJN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF603ABN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4472627 ENCODE Processing Pipeline 81881c2eb3c994ca231224ff2b71f64a https://www.encodeproject.org/files/ENCFF603ABN/@@download/ENCFF603ABN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF469ITO bed narrowPeak peaks ENCSR933EYC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF602SNK, ENCFF992FMF 6473699 ENCODE Processing Pipeline d06c42930a297a00d8aafc6d927fa8ac https://www.encodeproject.org/files/ENCFF469ITO/@@download/ENCFF469ITO.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF921LEX bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF174JQR, ENCFF508DBG 5337244 ENCODE Processing Pipeline dda5c613676ab4d729d96d4c0e99c2a9 https://www.encodeproject.org/files/ENCFF921LEX/@@download/ENCFF921LEX.bed.gz hg19 released low read length, low read depth missing control alignments ENCFF088NTX bed narrowPeak peaks ENCSR679STZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF792-human DNA formaldehyde False 2016-11-02 ENCODE 1 ENCFF883INN 6828500 ENCODE Processing Pipeline 04ed6bca9c371158fb646a9bffd2e777 https://www.encodeproject.org/files/ENCFF088NTX/@@download/ENCFF088NTX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF399MQT bed narrowPeak peaks ENCSR892ZTO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF548-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF489VWP 6686678 ENCODE Processing Pipeline 902a07f60d5ea4c5cf59b0b3f59777da https://www.encodeproject.org/files/ENCFF399MQT/@@download/ENCFF399MQT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF214BMQ bed narrowPeak peaks ENCSR696MBC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SRSF4-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF154PCC, ENCFF369VLT 5375062 ENCODE Processing Pipeline cd6ebec109862baff4c08b0692c08153 https://www.encodeproject.org/files/ENCFF214BMQ/@@download/ENCFF214BMQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF951JAH bed narrowPeak peaks ENCSR888HXN ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF155XUI, ENCFF553WEE 4971821 ENCODE Processing Pipeline 19ae34206f6df3fc2692b1ae4a6b3502 https://www.encodeproject.org/files/ENCFF951JAH/@@download/ENCFF951JAH.bed.gz hg19 released antibody characterized with exemption ENCFF488WTH bed narrowPeak peaks ENCSR289NSN ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF354C-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF064TXC 6084122 ENCODE Processing Pipeline 52e2d79009dd8568d0e355b17ebc532c https://www.encodeproject.org/files/ENCFF488WTH/@@download/ENCFF488WTH.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF651CJJ bed narrowPeak peaks ENCSR987GXT ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens CTCF-human DNA False 2017-10-19 ENCODE 1 ENCFF012OUS, ENCFF269ZDG, ENCFF560TNV 6681215 ENCODE Processing Pipeline efca6c1f51e285d7447fcc830b91412d https://www.encodeproject.org/files/ENCFF651CJJ/@@download/ENCFF651CJJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF305PBB bed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF998RRV 4040715 ENCODE Processing Pipeline 7fab496ccb08db39f132bd14491389ff https://www.encodeproject.org/files/ENCFF305PBB/@@download/ENCFF305PBB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF802MVF bed narrowPeak peaks ENCSR778QLY ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ELF4-human DNA False 2017-01-31 ENCODE 1 ENCFF040GAR, ENCFF833TQH 5744481 ENCODE Processing Pipeline 87dad70aa9c043d4ecd92ed563a6b90c https://www.encodeproject.org/files/ENCFF802MVF/@@download/ENCFF802MVF.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption ENCFF887CGM bed narrowPeak peaks ENCSR857PBV ChIP-seq EFO:0002095 22Rv1 cell line Homo sapiens CTCF-human DNA False 2017-06-15 ENCODE 1 ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ 7126902 ENCODE Processing Pipeline 6a916111c34985eec52fd3cc0dfa49ba https://www.encodeproject.org/files/ENCFF887CGM/@@download/ENCFF887CGM.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF036DTR bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human DNA False 2017-12-04 ENCODE 1 ENCFF051LWI, ENCFF662JMK 6792553 ENCODE Processing Pipeline 87d188037f4f45022e2f4c6b2523115d https://www.encodeproject.org/files/ENCFF036DTR/@@download/ENCFF036DTR.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF783JKF bed narrowPeak peaks ENCSR867WPH ChIP-seq UBERON:0002107 liver tissue Homo sapiens REST-human DNA False 2016-06-30 ENCODE 1 ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV 6565432 ENCODE Processing Pipeline 6aa5ae808742febf0230c56d9acb5167 https://www.encodeproject.org/files/ENCFF783JKF/@@download/ENCFF783JKF.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF727WJU bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF581ZJL, ENCFF861YTF 7063882 ENCODE Processing Pipeline 12166be600da69a05f8b8c0a2b48599d https://www.encodeproject.org/files/ENCFF727WJU/@@download/ENCFF727WJU.bed.gz hg19 released ENCFF809YZM bed narrowPeak peaks ENCSR673SGK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL6B-human DNA formaldehyde False 2017-05-17 ENCODE 1 ENCFF089CVW, ENCFF182WHU 6679148 ENCODE Processing Pipeline c581e90f5e64ab2a1f8b11f008372e9c https://www.encodeproject.org/files/ENCFF809YZM/@@download/ENCFF809YZM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF644PFR bed narrowPeak peaks ENCSR831EIW ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXM1-human DNA False 2017-04-14 ENCODE 1 ENCFF052TDK, ENCFF529BVI, ENCFF772FBN 6303308 ENCODE Processing Pipeline 5f57ce0648e594494bde45888303337f https://www.encodeproject.org/files/ENCFF644PFR/@@download/ENCFF644PFR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF030NPV bed narrowPeak peaks ENCSR761LRR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF512B-human DNA False 2017-09-28 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF612QPQ 6741614 ENCODE Processing Pipeline fce3049077570f0002fac66fa4fdf926 https://www.encodeproject.org/files/ENCFF030NPV/@@download/ENCFF030NPV.bed.gz hg19 released antibody characterized with exemption ENCFF121SXP bed narrowPeak peaks ENCSR000BJX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF417XUU, ENCFF472OOV 5695202 ENCODE Processing Pipeline eb5446d5581a3e921632b223a742a1ba https://www.encodeproject.org/files/ENCFF121SXP/@@download/ENCFF121SXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF158VHL bed narrowPeak peaks ENCSR315JJE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPL-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF081JMB, ENCFF375WCZ 5459381 ENCODE Processing Pipeline f974231817794c97d3056a9f97caa2be https://www.encodeproject.org/files/ENCFF158VHL/@@download/ENCFF158VHL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF252CYF bed narrowPeak peaks ENCSR804HMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF427GLC, ENCFF462KWM 5564124 ENCODE Processing Pipeline 67ede3d714eb75d1ad393010e2201681 https://www.encodeproject.org/files/ENCFF252CYF/@@download/ENCFF252CYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF257RXE bed narrowPeak peaks ENCSR000BIM ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF100AQB, ENCFF864ASU 4412393 ENCODE Processing Pipeline 2fde7dc0594fe5a62bbdd81b2bbfc518 https://www.encodeproject.org/files/ENCFF257RXE/@@download/ENCFF257RXE.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample missing control alignments ENCFF120JHT bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE 6850036 ENCODE Processing Pipeline d4b532087801b4bfd18ba5a256b119ae https://www.encodeproject.org/files/ENCFF120JHT/@@download/ENCFF120JHT.bed.gz hg19 released ENCFF461EJN bed narrowPeak peaks ENCSR336YRS ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF320PZV, ENCFF400GIP 6448308 ENCODE Processing Pipeline 474935757cdd19b2c99791a29e6cbf2e https://www.encodeproject.org/files/ENCFF461EJN/@@download/ENCFF461EJN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF368ICR bed narrowPeak peaks ENCSR000BMX ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour GATA3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF874VLY, ENCFF960JYT 5309367 ENCODE Processing Pipeline e7d2fb2df81ccb4cb6419371607adb70 https://www.encodeproject.org/files/ENCFF368ICR/@@download/ENCFF368ICR.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF614RLB bed narrowPeak peaks ENCSR715UCI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SOX13-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF740PUZ 6618173 ENCODE Processing Pipeline 2c3c0ebf72779da50c6af58f47dee890 https://www.encodeproject.org/files/ENCFF614RLB/@@download/ENCFF614RLB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF109JXK bed narrowPeak peaks ENCSR074SFL ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens CTCF-human DNA False 2017-03-20 ENCODE 1 ENCFF438KPT, ENCFF580MDV 6016392 ENCODE Processing Pipeline d25413af83de49a52cf86d95f876626e https://www.encodeproject.org/files/ENCFF109JXK/@@download/ENCFF109JXK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF179EGK bed narrowPeak peaks ENCSR103UPR ChIP-seq UBERON:0011907 gastrocnemius medialis tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF482GCR, ENCFF904EON 6609796 ENCODE Processing Pipeline f31e73e68b95515a24075b3d76f056ab https://www.encodeproject.org/files/ENCFF179EGK/@@download/ENCFF179EGK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF229EII bed narrowPeak peaks ENCSR147PYL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF033YSR, ENCFF992GXV 6714073 ENCODE Processing Pipeline 6f4784ea67835223eb8f148d127eac29 https://www.encodeproject.org/files/ENCFF229EII/@@download/ENCFF229EII.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF547NJW bed narrowPeak peaks ENCSR122LGV ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF424FQK, ENCFF869RCG 6000462 ENCODE Processing Pipeline d9e34bba0b7e9d355c80d86777748513 https://www.encodeproject.org/files/ENCFF547NJW/@@download/ENCFF547NJW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF322OPC bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF245PJA, ENCFF422HPM, ENCFF574XYY 4336218 ENCODE Processing Pipeline 3580d942b4d0b3d698399cc018084638 https://www.encodeproject.org/files/ENCFF322OPC/@@download/ENCFF322OPC.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF626BVG bed narrowPeak peaks ENCSR000BID ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF529FSM 3758228 ENCODE Processing Pipeline efa6e441abe311e7ddffe6e8a7adb261 https://www.encodeproject.org/files/ENCFF626BVG/@@download/ENCFF626BVG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF474BFW bed narrowPeak peaks ENCSR000BLD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944SJF 4366278 ENCODE Processing Pipeline 4008d402db31e69859e5275661f86729 https://www.encodeproject.org/files/ENCFF474BFW/@@download/ENCFF474BFW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF618ORM bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 6695600 ENCODE Processing Pipeline fd82e2ffab70d020916fc31f1e944d4d https://www.encodeproject.org/files/ENCFF618ORM/@@download/ENCFF618ORM.bed.gz hg19 released ENCFF434CQV bed narrowPeak peaks ENCSR000DZX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF205RMR, ENCFF545DZO 3616303 ENCODE Processing Pipeline dd542aa81f9d46b5460ec319fc70bc21 https://www.encodeproject.org/files/ENCFF434CQV/@@download/ENCFF434CQV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF037BJD bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF844VCV 6046939 ENCODE Processing Pipeline d2b5c4be0b5525b49291ebf01a7449b5 https://www.encodeproject.org/files/ENCFF037BJD/@@download/ENCFF037BJD.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF951XWI bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2017-09-29 ENCODE 1 ENCFF410WSQ, ENCFF581ZJL 6612725 ENCODE Processing Pipeline 3524fdf624f98312e8d8eddba86a108e https://www.encodeproject.org/files/ENCFF951XWI/@@download/ENCFF951XWI.bed.gz hg19 released mild to moderate bottlenecking ENCFF782FAJ bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA False 2017-05-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF798EEI 6792822 ENCODE Processing Pipeline 7f92a2c22d03cbc0d8ef279014a1724a https://www.encodeproject.org/files/ENCFF782FAJ/@@download/ENCFF782FAJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF686SJD bed narrowPeak peaks ENCSR000BKP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF255PIM, ENCFF356DXM 4137913 ENCODE Processing Pipeline e03796a634f2dca9d97626146b10d083 https://www.encodeproject.org/files/ENCFF686SJD/@@download/ENCFF686SJD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample poor library complexity, severe bottlenecking ENCFF161OVA bed narrowPeak peaks ENCSR922GUA ChIP-seq UBERON:0004648 esophagus muscularis mucosa tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF224XOE, ENCFF580MDV 5601291 ENCODE Processing Pipeline a1aebb2fe4b1b0df7c6246ff207a535a https://www.encodeproject.org/files/ENCFF161OVA/@@download/ENCFF161OVA.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF625RGX bed narrowPeak peaks ENCSR022IZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF623-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF575OIR 6909123 ENCODE Processing Pipeline 4ef575d458a3633ae49387145fdc0d3d https://www.encodeproject.org/files/ENCFF625RGX/@@download/ENCFF625RGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF713DPH bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF851QFR, ENCFF957SXO 5377602 ENCODE Processing Pipeline b2aa8ae86ae6ab9b127a951cb49416f1 https://www.encodeproject.org/files/ENCFF713DPH/@@download/ENCFF713DPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF554MYS bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF140KEX, ENCFF502LLI 5425583 ENCODE Processing Pipeline d8257879064125b49782be75467d4b28 https://www.encodeproject.org/files/ENCFF554MYS/@@download/ENCFF554MYS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF175UOC bed narrowPeak peaks ENCSR417VWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZEB2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF286WTH 7090961 ENCODE Processing Pipeline fc09ee140140a26478bc9b409ae43af4 https://www.encodeproject.org/files/ENCFF175UOC/@@download/ENCFF175UOC.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF613MHZ bed narrowPeak peaks ENCSR338DGO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT2-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF579WVJ 7312955 ENCODE Processing Pipeline ecdd27bb354df5e2e64a504f17fdd710 https://www.encodeproject.org/files/ENCFF613MHZ/@@download/ENCFF613MHZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF163RUV bed narrowPeak peaks ENCSR031URL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens XRCC5-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF241OMA, ENCFF462KWM 6488511 ENCODE Processing Pipeline d72cce4de30dc672a79d564886852545 https://www.encodeproject.org/files/ENCFF163RUV/@@download/ENCFF163RUV.bed.gz hg19 released low read length, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF049YTC bed narrowPeak peaks ENCSR711XNY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF869BJB, ENCFF941TZZ 6575051 ENCODE Processing Pipeline 48fe60fc518d56b3898230f0ff2c8eb2 https://www.encodeproject.org/files/ENCFF049YTC/@@download/ENCFF049YTC.bed.gz hg19 released mild to moderate bottlenecking ENCFF745UIZ bed narrowPeak peaks ENCSR738SLS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF449-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF445HJT 6676603 ENCODE Processing Pipeline 777d304afa134dfd1e3ac5ae452290be https://www.encodeproject.org/files/ENCFF745UIZ/@@download/ENCFF745UIZ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF017WRM bed narrowPeak peaks ENCSR126YEB ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens FOXA1-human DNA False 2016-07-08 ENCODE 1 ENCFF287PVI, ENCFF583FAG 6329760 ENCODE Processing Pipeline f77ad2aefa143dbab754758f42ebc6cb https://www.encodeproject.org/files/ENCFF017WRM/@@download/ENCFF017WRM.bed.gz hg19 released low read depth ENCFF762KYA bed narrowPeak peaks ENCSR218GSN ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZFX-human DNA False 2017-07-21 ENCODE 1 ENCFF158ZFF, ENCFF577USD, ENCFF775HLS 7198375 ENCODE Processing Pipeline 3f17d6ce4249506359a13643c3fe7002 https://www.encodeproject.org/files/ENCFF762KYA/@@download/ENCFF762KYA.bed.gz hg19 released antibody characterized with exemption NTR biosample ENCFF253IKF bed narrowPeak peaks ENCSR128IYN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SNRNP70-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF375WCZ, ENCFF581FMD 5482960 ENCODE Processing Pipeline 249b845cd9b85e8ef8ee9f7148c3c344 https://www.encodeproject.org/files/ENCFF253IKF/@@download/ENCFF253IKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF295HXB bed narrowPeak peaks ENCSR156CWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-DNMT3B-human DNA False 2016-09-26 ENCODE 1 ENCFF023YTY, ENCFF968PCC 5808975 ENCODE Processing Pipeline 6be4910cb1f430a3f6eb8df1151940e1 https://www.encodeproject.org/files/ENCFF295HXB/@@download/ENCFF295HXB.bed.gz hg19 released control low read depth, missing genetic modification characterization characterization(s) pending review ENCFF357ABR bed narrowPeak peaks ENCSR950ACO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF785-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF840CEN 6691736 ENCODE Processing Pipeline 190ee58fa1fe421fbddf62fd220c2980 https://www.encodeproject.org/files/ENCFF357ABR/@@download/ENCFF357ABR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF974RFW bed narrowPeak peaks ENCSR402IDP ChIP-seq EFO:0005724 MM.1S cell line Homo sapiens CTCF-human DNA False 2016-08-11 ENCODE 1 ENCFF011CRJ, ENCFF824DBS 6536918 ENCODE Processing Pipeline 0cb1fa6b766990b698099b6a1366dd10 https://www.encodeproject.org/files/ENCFF974RFW/@@download/ENCFF974RFW.bed.gz hg19 released low read length, antibody characterized with exemption, mixed read lengths NTR biosample ENCFF734ODE bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human DNA False 2018-01-26 ENCODE 1 ENCFF335IPE, ENCFF698CGK 5398160 ENCODE Processing Pipeline 0785087fd5337e650d276effc250e9d1 https://www.encodeproject.org/files/ENCFF734ODE/@@download/ENCFF734ODE.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF021ZIA bed narrowPeak peaks ENCSR617IFZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-CTCF-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF954JCE 7092118 ENCODE Processing Pipeline 0debfbe11439ad239461a13416aaebb4 https://www.encodeproject.org/files/ENCFF021ZIA/@@download/ENCFF021ZIA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF923UBI bed narrowPeak peaks ENCSR021DJC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-BCL11A-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF802VUL 6764456 ENCODE Processing Pipeline 31effcca60421d1e8c60bf706b244152 https://www.encodeproject.org/files/ENCFF923UBI/@@download/ENCFF923UBI.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF299XYT bed narrowPeak peaks ENCSR592KSP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP64-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440OEL 6472306 ENCODE Processing Pipeline a7408eb5b90f2b20cb061dbe2d90397b https://www.encodeproject.org/files/ENCFF299XYT/@@download/ENCFF299XYT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF527ZED bed narrowPeak peaks ENCSR440COG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF239-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF856TQX 6570720 ENCODE Processing Pipeline e499059fd8cf76e0346799ed8654d42f https://www.encodeproject.org/files/ENCFF527ZED/@@download/ENCFF527ZED.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF415ATH bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF903MUJ 5480434 ENCODE Processing Pipeline e663731b6cbec67cbebc13b84865e7a6 https://www.encodeproject.org/files/ENCFF415ATH/@@download/ENCFF415ATH.bed.gz hg19 released file validation error, borderline replicate concordance, low read depth mismatched file status ENCFF609DTK bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF869CLO 5620010 ENCODE Processing Pipeline 13acb9cf6ce2e69b859c7aabf99aaa7e https://www.encodeproject.org/files/ENCFF609DTK/@@download/ENCFF609DTK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF656CUX bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human DNA False 2016-03-02 ENCODE 1 ENCFF142DHE, ENCFF335IPE 5509302 ENCODE Processing Pipeline 942fb93cdd4270c3101187df6db73966 https://www.encodeproject.org/files/ENCFF656CUX/@@download/ENCFF656CUX.bed.gz hg19 released low read length, low read depth ENCFF927QZZ bed narrowPeak peaks ENCSR762PCG ChIP-seq UBERON:0002190 subcutaneous adipose tissue tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF329KGR, ENCFF982YZF 4171062 ENCODE Processing Pipeline e6b6602f40460f8ff484ddd7ba20c247 https://www.encodeproject.org/files/ENCFF927QZZ/@@download/ENCFF927QZZ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF984NYN bed narrowPeak peaks ENCSR907BES ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF214PDY, ENCFF579HSF 6358819 ENCODE Processing Pipeline 0c2b795df4e4823dabb906d6b529e05d https://www.encodeproject.org/files/ENCFF984NYN/@@download/ENCFF984NYN.bed.gz hg19 released antibody characterized with exemption NTR biosample, mismatched file status, experiment not submitted to GEO missing nih_institutional_certification ENCFF198CPZ bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human DNA False 2017-05-17 ENCODE 1 ENCFF033PRP, ENCFF160VXC 6717709 ENCODE Processing Pipeline f4b1a73f9cff8d1402fcf2f19e0fea73 https://www.encodeproject.org/files/ENCFF198CPZ/@@download/ENCFF198CPZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF509AXQ bed narrowPeak peaks ENCSR464KFG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF140-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF114YKN 6309957 ENCODE Processing Pipeline 3f158883c86749a86e7b7fff60b2938e https://www.encodeproject.org/files/ENCFF509AXQ/@@download/ENCFF509AXQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF555PRT bed narrowPeak peaks ENCSR702GMW ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF373PZM, ENCFF567WDW, ENCFF618RNL 7067021 ENCODE Processing Pipeline 8373c7a4e4a68b272bfbd3451ddfe271 https://www.encodeproject.org/files/ENCFF555PRT/@@download/ENCFF555PRT.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF883ZAE bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA False 2016-07-28 ENCODE 1 ENCFF357FKU, ENCFF581ZJL 6932385 ENCODE Processing Pipeline 973b8e66a7e34eae1cbfafbd7b88fd0a https://www.encodeproject.org/files/ENCFF883ZAE/@@download/ENCFF883ZAE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF370RXL bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2016-11-10 ENCODE 1 ENCFF051LWI, ENCFF324TIY 6491769 ENCODE Processing Pipeline e4a41a2fa968685a3a194a553f6db1dd https://www.encodeproject.org/files/ENCFF370RXL/@@download/ENCFF370RXL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF129THB bed narrowPeak peaks ENCSR156APP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PTBP1-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF405FNP, ENCFF885UDL 5187681 ENCODE Processing Pipeline b8f4f474a47792308b79d70e1ab5da24 https://www.encodeproject.org/files/ENCFF129THB/@@download/ENCFF129THB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF013SWZ bed narrowPeak peaks ENCSR247XFV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CCAR2-human DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF012EGY, ENCFF568YOD 5261367 ENCODE Processing Pipeline 4b949e53067838c194ce709347a0c62d https://www.encodeproject.org/files/ENCFF013SWZ/@@download/ENCFF013SWZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity experiment not submitted to GEO ENCFF031LVS bed narrowPeak peaks ENCSR237TFX ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF760DHW, ENCFF993THI 6741875 ENCODE Processing Pipeline df3c5dd321034b12ce8fc8befc607450 https://www.encodeproject.org/files/ENCFF031LVS/@@download/ENCFF031LVS.bed.gz hg19 released borderline replicate concordance ENCFF351HSM bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477SGV, ENCFF594IKC 5428885 ENCODE Processing Pipeline a7fd826f7392e09bc6263c84edd354dc https://www.encodeproject.org/files/ENCFF351HSM/@@download/ENCFF351HSM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO ENCFF329TNA bed narrowPeak peaks ENCSR094WHO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens FOXA1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF068ELI 5866358 ENCODE Processing Pipeline 2912a7ff38987f563340dab91a2a0257 https://www.encodeproject.org/files/ENCFF329TNA/@@download/ENCFF329TNA.bed.gz hg19 released mild to moderate bottlenecking ENCFF688WOB bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4317244 ENCODE Processing Pipeline ca4086a0202c64d1ebea3c36c2a83996 https://www.encodeproject.org/files/ENCFF688WOB/@@download/ENCFF688WOB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF911LYM bed narrowPeak peaks ENCSR459FTB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens UBTF-human DNA False 2014-07-07 ENCODE 1 ENCFF370YOR, ENCFF426WJH 4521251 ENCODE Processing Pipeline d5130701e176e5988d36e1886b8008a0 https://www.encodeproject.org/files/ENCFF911LYM/@@download/ENCFF911LYM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF167FGN bed narrowPeak peaks ENCSR661AXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF169-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF765AHP 6609936 ENCODE Processing Pipeline 91d9fa671d6d25c25e10d98022bd9926 https://www.encodeproject.org/files/ENCFF167FGN/@@download/ENCFF167FGN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF501PBQ bed narrowPeak peaks ENCSR348ONY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP41-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF156RXB 6576357 ENCODE Processing Pipeline 915ad95ce18ff8ec88f16facca60094f https://www.encodeproject.org/files/ENCFF501PBQ/@@download/ENCFF501PBQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF846YPA bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human DNA False 2017-05-17 ENCODE 1 ENCFF510XHR, ENCFF581ZJL 6969714 ENCODE Processing Pipeline 62e5ebddd24974b5d6e8e6dbb6cc0480 https://www.encodeproject.org/files/ENCFF846YPA/@@download/ENCFF846YPA.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF642ZUX bed narrowPeak peaks ENCSR197DJH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SREBF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF829MEE 6272080 ENCODE Processing Pipeline 68f26d51b5cf69624c9622f1f1e737ea https://www.encodeproject.org/files/ENCFF642ZUX/@@download/ENCFF642ZUX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF932DYK bed narrowPeak peaks ENCSR347NOB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPZ-human DNA False 2016-03-02 ENCODE 1 ENCFF426WJH, ENCFF634ELX 4436318 ENCODE Processing Pipeline d2c17667ce64ae8b302a304bc09b6b67 https://www.encodeproject.org/files/ENCFF932DYK/@@download/ENCFF932DYK.bed.gz hg19 released low read length, low read depth ENCFF165IOO bed narrowPeak peaks ENCSR605MGM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SCRT1-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF642PIG 7206807 ENCODE Processing Pipeline 89cb6cd0ec53a18e6bba52c8a29eb475 https://www.encodeproject.org/files/ENCFF165IOO/@@download/ENCFF165IOO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF443DXB bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF817XAJ 6804835 ENCODE Processing Pipeline 6b8959a7b8a8c771004bde83f0b6a755 https://www.encodeproject.org/files/ENCFF443DXB/@@download/ENCFF443DXB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF491ZMR bed narrowPeak peaks ENCSR184MFH ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens ZFP36-human DNA False 2014-07-07 ENCODE 1 ENCFF316UXC, ENCFF407ZMZ 4054862 ENCODE Processing Pipeline 973d1132b60ecc98df357eb532c91f46 https://www.encodeproject.org/files/ENCFF491ZMR/@@download/ENCFF491ZMR.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO partially characterized antibody ENCFF670NPG bed narrowPeak peaks ENCSR715QNO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF362-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF422TQA 7274116 ENCODE Processing Pipeline 01616fbf224c6fb0449cc7aaf6a20e1c https://www.encodeproject.org/files/ENCFF670NPG/@@download/ENCFF670NPG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF391VQJ bed narrowPeak peaks ENCSR473SUA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF466OCY, ENCFF863STQ 4281301 ENCODE Processing Pipeline fd334351cebc3c1ce7fc0f01ad9794e0 https://www.encodeproject.org/files/ENCFF391VQJ/@@download/ENCFF391VQJ.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance mismatched file status ENCFF830DCZ bed narrowPeak peaks ENCSR502KPJ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF843-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF760BKV 6877167 ENCODE Processing Pipeline a3a38aa52241dcebc73412ae58edb536 https://www.encodeproject.org/files/ENCFF830DCZ/@@download/ENCFF830DCZ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF671MPM bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 6488737 ENCODE Processing Pipeline 9779ff42fcda6560a204a2f99b346aa1 https://www.encodeproject.org/files/ENCFF671MPM/@@download/ENCFF671MPM.bed.gz hg19 released mild to moderate bottlenecking ENCFF394AHT bed narrowPeak peaks ENCSR954WVZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL 6632562 ENCODE Processing Pipeline 6c6347af803bf0c891ffda6a72429358 https://www.encodeproject.org/files/ENCFF394AHT/@@download/ENCFF394AHT.bed.gz hg19 archived mild to moderate bottlenecking ENCFF358DXV bed narrowPeak peaks ENCSR080CST ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF639-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF485MII 6896519 ENCODE Processing Pipeline 57e66ab774a87e729cc11b311c37a014 https://www.encodeproject.org/files/ENCFF358DXV/@@download/ENCFF358DXV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF360HFD bed narrowPeak peaks ENCSR543BVU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SOX6-human DNA False 2017-06-29 ENCODE 1 ENCFF013XVD, ENCFF449NNE 6301788 ENCODE Processing Pipeline dd4e147d1e01242123f6cbce6a742610 https://www.encodeproject.org/files/ENCFF360HFD/@@download/ENCFF360HFD.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF945IDU bed narrowPeak peaks ENCSR756URL ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF687UPN, ENCFF721SJQ 6219710 ENCODE Processing Pipeline bd52af1a09149720674a17d9ebca50e6 https://www.encodeproject.org/files/ENCFF945IDU/@@download/ENCFF945IDU.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF406TUM bed narrowPeak peaks ENCSR224NFP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF426-human DNA formaldehyde False 2017-03-16 ENCODE 1 ENCFF182WHU, ENCFF571UJH 6952469 ENCODE Processing Pipeline 3427690219ad4f387d833233e8a0e0c3 https://www.encodeproject.org/files/ENCFF406TUM/@@download/ENCFF406TUM.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity, missing genetic modification characterization missing control alignments ENCFF444PKI bed narrowPeak peaks ENCSR135ANT ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens NRF1-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF687COF 5770378 ENCODE Processing Pipeline a2ebc03941cc80f3aa2c12a4b8410b39 https://www.encodeproject.org/files/ENCFF444PKI/@@download/ENCFF444PKI.bed.gz hg19 released ENCFF158PJI bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF581ZJL, ENCFF599UMI 6292302 ENCODE Processing Pipeline 5817bd2bc47a0d98ce9dbc84ff763fe4 https://www.encodeproject.org/files/ENCFF158PJI/@@download/ENCFF158PJI.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF767OVA bed narrowPeak peaks ENCSR892DRK ChIP-seq EFO:0001086 A549 cell line Homo sapiens REST-human DNA False 2016-11-23 ENCODE 1 ENCFF779HOG, ENCFF801GGG, ENCFF881DVS 6195623 ENCODE Processing Pipeline 68cf868c705e7cd7226f5b2bdda1b0a4 https://www.encodeproject.org/files/ENCFF767OVA/@@download/ENCFF767OVA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF832PXR bed narrowPeak peaks ENCSR721QZV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN18-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF478KXP 6492614 ENCODE Processing Pipeline ae992aab9768951c23f05b45c9d6b074 https://www.encodeproject.org/files/ENCFF832PXR/@@download/ENCFF832PXR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF230HGO bed narrowPeak peaks ENCSR849DFF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-PBX2-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF085FPP 5142371 ENCODE Processing Pipeline 71ba62913bf26163ca612c6859c38da0 https://www.encodeproject.org/files/ENCFF230HGO/@@download/ENCFF230HGO.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF899PSA bed narrowPeak peaks ENCSR984MDV ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF24-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF469URD 6915760 ENCODE Processing Pipeline 1d2d360bff89a4e1e947d5b6dc93a585 https://www.encodeproject.org/files/ENCFF899PSA/@@download/ENCFF899PSA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF039PBB bed narrowPeak peaks ENCSR061DGF ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens NANOG-human DNA False 2016-06-30 ENCODE 1 ENCFF017YFK, ENCFF786QGA 4632809 ENCODE Processing Pipeline c5eb36ae5ce07910b68754eeede062fa https://www.encodeproject.org/files/ENCFF039PBB/@@download/ENCFF039PBB.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF921JTC bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF119AKS, ENCFF502LLI 5614290 ENCODE Processing Pipeline ad20690d2c1bcb19d44409d9c0d69cd4 https://www.encodeproject.org/files/ENCFF921JTC/@@download/ENCFF921JTC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF730CLD bed narrowPeak peaks ENCSR862PNL ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens L3MBTL2-human DNA False 2016-11-21 ENCODE 1 ENCFF529BVI, ENCFF606EGM, ENCFF772FBN 7076180 ENCODE Processing Pipeline 4bb3949417e1b55a046348465c1ed5e4 https://www.encodeproject.org/files/ENCFF730CLD/@@download/ENCFF730CLD.bed.gz hg19 released mild to moderate bottlenecking ENCFF439JKZ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021SBT, ENCFF152TEK 5434497 ENCODE Processing Pipeline 59a464a69517252724b7eb1cdfa9d73d https://www.encodeproject.org/files/ENCFF439JKZ/@@download/ENCFF439JKZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF210XHR bed narrowPeak peaks ENCSR595FAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF510-human DNA formaldehyde False 2018-01-30 ENCODE 1 ENCFF070IDW 6375320 ENCODE Processing Pipeline c536df48481e32f1f30e56c061c0ad0f https://www.encodeproject.org/files/ENCFF210XHR/@@download/ENCFF210XHR.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF225TLM bed narrowPeak peaks ENCSR014YCR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF252NHP, ENCFF941TZZ 6637467 ENCODE Processing Pipeline 56d8b699f70428bd1566f7c6c2fe4a0d https://www.encodeproject.org/files/ENCFF225TLM/@@download/ENCFF225TLM.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF406YGF bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6755518 ENCODE Processing Pipeline a33ae1367f5f7bff47dd2433ef6bd489 https://www.encodeproject.org/files/ENCFF406YGF/@@download/ENCFF406YGF.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF313UKE bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6812372 ENCODE Processing Pipeline 85ba7f28c130cc201d5bef20fda3226d https://www.encodeproject.org/files/ENCFF313UKE/@@download/ENCFF313UKE.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF037TEH bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF600TNX, ENCFF851QFR 4712573 ENCODE Processing Pipeline 413e4b43f19533fd13950fe6e55cbefb https://www.encodeproject.org/files/ENCFF037TEH/@@download/ENCFF037TEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance ENCFF775VAP bed narrowPeak peaks ENCSR396QWK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-MBD1-human DNA False 2016-06-14 ENCODE 1 ENCFF023YTY, ENCFF352OYX 6212491 ENCODE Processing Pipeline 8196829fa410b15e8c254dff080cfe10 https://www.encodeproject.org/files/ENCFF775VAP/@@download/ENCFF775VAP.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization characterization(s) pending review ENCFF893YFR bed narrowPeak peaks ENCSR497IAS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF747-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF377NHQ 6630300 ENCODE Processing Pipeline e4c23c1960c5d24fe0823ad4e798a870 https://www.encodeproject.org/files/ENCFF893YFR/@@download/ENCFF893YFR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF890GNM bed narrowPeak peaks ENCSR098YLE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PRDM1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF180VNC 7254930 ENCODE Processing Pipeline ee8067746a09f6446f2355f2cdabd840 https://www.encodeproject.org/files/ENCFF890GNM/@@download/ENCFF890GNM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF668IDF bed narrowPeak peaks ENCSR477OJI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF423-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF387CIP 6818680 ENCODE Processing Pipeline 3de7faffd2ee395a1e1cd606c5784558 https://www.encodeproject.org/files/ENCFF668IDF/@@download/ENCFF668IDF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF834WHV bed narrowPeak peaks ENCSR171FUX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXK2-human DNA False 2016-04-22 ENCODE 1 ENCFF449NNE, ENCFF523AHK 6062598 ENCODE Processing Pipeline a2b42fd8dfab567ed71052c4fe36b56e https://www.encodeproject.org/files/ENCFF834WHV/@@download/ENCFF834WHV.bed.gz hg19 released ENCFF244RZK bed narrowPeak peaks ENCSR854IPI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF707-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF229ETI 6742424 ENCODE Processing Pipeline 8ed7aca79957cdd4f70a8974081253dc https://www.encodeproject.org/files/ENCFF244RZK/@@download/ENCFF244RZK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF804AYO bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human DNA False 2016-08-24 ENCODE 1 ENCFF139VKC, ENCFF968SMN 6110096 ENCODE Processing Pipeline 5794fc2a4328b650b1c513b414fb8761 https://www.encodeproject.org/files/ENCFF804AYO/@@download/ENCFF804AYO.bed.gz hg19 released file validation error, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization mismatched file status, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF701JMF bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-06-13 ENCODE 1 ENCFF073BGI, ENCFF581ZJL 6933666 ENCODE Processing Pipeline 1620ca7375f85882e35e913c96ae9ec5 https://www.encodeproject.org/files/ENCFF701JMF/@@download/ENCFF701JMF.bed.gz hg19 released ENCFF222PPL bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF989OSX 6412170 ENCODE Processing Pipeline f703f936ce9333620ca52565db1f4a11 https://www.encodeproject.org/files/ENCFF222PPL/@@download/ENCFF222PPL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF157HQJ bed narrowPeak peaks ENCSR701RXW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF530-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF884VSM 6056902 ENCODE Processing Pipeline a433709568512c571da53155355b9cc6 https://www.encodeproject.org/files/ENCFF157HQJ/@@download/ENCFF157HQJ.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF890HLT bed narrowPeak peaks ENCSR625ORP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SYNCRIP-human DNA SDS formaldehyde False 2018-05-16 ENCODE 1 ENCFF405FNP, ENCFF880EQU 3875984 ENCODE Processing Pipeline a452a0d65fa6a5c52d218ad64ffa6455 https://www.encodeproject.org/files/ENCFF890HLT/@@download/ENCFF890HLT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read depth ENCFF344BWA bed narrowPeak peaks ENCSR076EZB ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF9-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF063SNY 7048808 ENCODE Processing Pipeline d62bfa375b1d466e3780ccf26af0a69e https://www.encodeproject.org/files/ENCFF344BWA/@@download/ENCFF344BWA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF945SAK bed narrowPeak peaks ENCSR066FXN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPH1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF527XRI 5679926 ENCODE Processing Pipeline 8d9742c262226324197683eea5de3134 https://www.encodeproject.org/files/ENCFF945SAK/@@download/ENCFF945SAK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO ENCFF996USV bed narrowPeak peaks ENCSR252QYR ChIP-seq CL:0000182 hepatocyte in vitro differentiated cells Homo sapiens CTCF-human DNA False 2016-11-23 ENCODE 1 ENCFF044VWD, ENCFF812MYK, ENCFF831TJC 6041227 ENCODE Processing Pipeline 454f7046e17bdacfc161100d68b14f20 https://www.encodeproject.org/files/ENCFF996USV/@@download/ENCFF996USV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample poor library complexity ENCFF480CCO bed narrowPeak peaks ENCSR542FLV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA False 2017-11-13 ENCODE 1 ENCFF146EZL, ENCFF941TZZ 6211209 ENCODE Processing Pipeline d621c8803b3601df8479e24f0a4b7c6b https://www.encodeproject.org/files/ENCFF480CCO/@@download/ENCFF480CCO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance experiment not submitted to GEO ENCFF910ZAR bed narrowPeak peaks ENCSR692HSE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY2-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF392OKA 6877130 ENCODE Processing Pipeline 67a529155a6326957bc85e0d17058c3a https://www.encodeproject.org/files/ENCFF910ZAR/@@download/ENCFF910ZAR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF363SUO bed narrowPeak peaks ENCSR277VIC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC6-human DNA False 2017-12-14 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF787LCO 5951451 ENCODE Processing Pipeline 86faffd04f45d2c295fe5c46174bbb15 https://www.encodeproject.org/files/ENCFF363SUO/@@download/ENCFF363SUO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF368IHM bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF216EBS, ENCFF508DBG 5654023 ENCODE Processing Pipeline 41b2340859901069610fca97bbe1ca32 https://www.encodeproject.org/files/ENCFF368IHM/@@download/ENCFF368IHM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF776LQY bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF359CBG, ENCFF506DFV 6394384 ENCODE Processing Pipeline b4546201bfab9d5668f1ae28cd6976eb https://www.encodeproject.org/files/ENCFF776LQY/@@download/ENCFF776LQY.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF559LUB bed narrowPeak peaks ENCSR236YGF ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF658UTU, ENCFF788LJE 6209258 ENCODE Processing Pipeline 238f11d7842436e967073bd16144a892 https://www.encodeproject.org/files/ENCFF559LUB/@@download/ENCFF559LUB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis missing nih_institutional_certification ENCFF612RKY bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2018-01-26 ENCODE 1 ENCFF463TFB, ENCFF581ZJL 6725703 ENCODE Processing Pipeline db56a1b97b1aaba7d7eb2ed370b55e66 https://www.encodeproject.org/files/ENCFF612RKY/@@download/ENCFF612RKY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF227KPY bed narrowPeak peaks ENCSR243INX ChIP-seq EFO:0002847 PC-9 cell line Homo sapiens CTCF-human DNA False 2017-01-12 ENCODE 1 ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY 6427945 ENCODE Processing Pipeline be3dae88aff168362e1ea5418de02669 https://www.encodeproject.org/files/ENCFF227KPY/@@download/ENCFF227KPY.bed.gz hg19 released mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF066ESG bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human DNA False 2016-11-17 ENCODE 1 ENCFF581ZJL, ENCFF808HEF 7153106 ENCODE Processing Pipeline bee251de2f81da98d55e8beebd9ee60d https://www.encodeproject.org/files/ENCFF066ESG/@@download/ENCFF066ESG.bed.gz hg19 released borderline replicate concordance ENCFF354CCY bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 5151457 ENCODE Processing Pipeline 7b71ba6dd4b8df5a28140cd8a4bdce0d https://www.encodeproject.org/files/ENCFF354CCY/@@download/ENCFF354CCY.bed.gz hg19 released low read length, borderline replicate concordance ENCFF047PAI bed narrowPeak peaks ENCSR157CAU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZKSCAN1-human DNA False 2014-07-07 ENCODE 1 ENCFF791YJK, ENCFF863VMN 5301833 ENCODE Processing Pipeline 44b552379b1227ad47d48d6578374815 https://www.encodeproject.org/files/ENCFF047PAI/@@download/ENCFF047PAI.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF220SFO bed narrowPeak peaks ENCSR179SAO ChIP-seq EFO:0002106 A673 cell line Homo sapiens EZH2-human DNA False 2017-11-29 ENCODE 1 ENCFF042EJM, ENCFF705RUU, ENCFF929MTA 7145261 ENCODE Processing Pipeline 410cd1c1651f8bf957540e7acf93b177 https://www.encodeproject.org/files/ENCFF220SFO/@@download/ENCFF220SFO.bed.gz hg19 released borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF979TGX bed narrowPeak peaks ENCSR909TSW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF547-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF021FPF 6741045 ENCODE Processing Pipeline 8ee09a7d0cfad15392562f07a51aad42 https://www.encodeproject.org/files/ENCFF979TGX/@@download/ENCFF979TGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF917MIW bed narrowPeak peaks ENCSR635NOQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF8-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF573RBP 7047873 ENCODE Processing Pipeline 49ed046b60103466b9ba278016a8900c https://www.encodeproject.org/files/ENCFF917MIW/@@download/ENCFF917MIW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF300RLB bed narrowPeak peaks ENCSR681NOM ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CEBPB-human DNA False 2014-07-07 ENCODE 1 ENCFF426WJH, ENCFF573GQJ 3989931 ENCODE Processing Pipeline 63a953c29fe9ecd800a8669dbce70dc2 https://www.encodeproject.org/files/ENCFF300RLB/@@download/ENCFF300RLB.bed.gz hg19 released low read length, low read depth ENCFF498CHM bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF177GKX, ENCFF353XLY 5439400 ENCODE Processing Pipeline 7acb46a171c05b14d2af9387c81421f3 https://www.encodeproject.org/files/ENCFF498CHM/@@download/ENCFF498CHM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF155AMR bed narrowPeak peaks ENCSR945NSF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PCBP2-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF366PYR, ENCFF536AHS, ENCFF609QFO 5235237 ENCODE Processing Pipeline 0ebc661caa54753dea0073347dc8f02a https://www.encodeproject.org/files/ENCFF155AMR/@@download/ENCFF155AMR.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF045DDN bed narrowPeak peaks ENCSR859BMR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF827QKJ 7089363 ENCODE Processing Pipeline f1a873475fa3503c07fbffeff7cfadb2 https://www.encodeproject.org/files/ENCFF045DDN/@@download/ENCFF045DDN.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF255SFG bed narrowPeak peaks ENCSR827NWO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-FEZF1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF004WBX 7001128 ENCODE Processing Pipeline 8ceed69c821a3b5588f14244906cd8a8 https://www.encodeproject.org/files/ENCFF255SFG/@@download/ENCFF255SFG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF386ILV bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 6707725 ENCODE Processing Pipeline 5a9d61cbb45c30936e48fbbf626c5615 https://www.encodeproject.org/files/ENCFF386ILV/@@download/ENCFF386ILV.bed.gz hg19 released antibody characterized with exemption ENCFF364YQW bed narrowPeak peaks ENCSR288IJC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MAZ-human DNA False 2014-07-07 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN 6816660 ENCODE Processing Pipeline a7f2d4300dab58bb7b9ce4abc0d9d609 https://www.encodeproject.org/files/ENCFF364YQW/@@download/ENCFF364YQW.bed.gz hg19 archived antibody characterized with exemption ENCFF014VXF bed narrowPeak peaks ENCSR861JUQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens FOXK2-human DNA False 2017-01-27 ENCODE 1 ENCFF592WAL, ENCFF794TKO, ENCFF901CND 7125011 ENCODE Processing Pipeline 2c378fb23bfd4dd50251096f46e8c02a https://www.encodeproject.org/files/ENCFF014VXF/@@download/ENCFF014VXF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF895NJW bed narrowPeak peaks ENCSR584ATA ChIP-seq EFO:0006710 OCI-LY3 cell line Homo sapiens EZH2phosphoT487-human DNA False 2018-02-06 ENCODE 1 ENCFF574DLY, ENCFF933BLG 5506392 ENCODE Processing Pipeline b52f16ff97121cecc8a753adfec856fc https://www.encodeproject.org/files/ENCFF895NJW/@@download/ENCFF895NJW.bed.gz hg19 released mixed run types, low read depth, antibody characterized with exemption biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO ENCFF011UZZ bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human DNA False 2016-04-21 ENCODE 1 ENCFF367QVT, ENCFF581ZJL 6897052 ENCODE Processing Pipeline 75f43cabef1cec46da521df4ee68fd85 https://www.encodeproject.org/files/ENCFF011UZZ/@@download/ENCFF011UZZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF391ODX bed narrowPeak peaks ENCSR866QPZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ATF7-human DNA False 2016-07-08 ENCODE 1 ENCFF194ECV, ENCFF583FAG 6237782 ENCODE Processing Pipeline 0634a0c370f52b3fb44a0b1cc19ef991 https://www.encodeproject.org/files/ENCFF391ODX/@@download/ENCFF391ODX.bed.gz hg19 released mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF752PSY bed narrowPeak peaks ENCSR066BZZ ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day CTCF-human DNA False 2016-11-24 ENCODE 1 ENCFF093OXI, ENCFF571VVW, ENCFF773HIM 6715847 ENCODE Processing Pipeline 9b478693faabb4574d0ff5fd47c56a59 https://www.encodeproject.org/files/ENCFF752PSY/@@download/ENCFF752PSY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample ENCFF251ZGT bed narrowPeak peaks ENCSR519QAA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNRNPK-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF013TMF, ENCFF758YUI 5651945 ENCODE Processing Pipeline 9a1f9c173d9924e90f03fde80cb90b98 https://www.encodeproject.org/files/ENCFF251ZGT/@@download/ENCFF251ZGT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF824GTA bed narrowPeak peaks ENCSR101FJS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF241DWU, ENCFF863VMN 5279146 ENCODE Processing Pipeline bb53b1ef60e65b9cb73ae2aeb7befbb2 https://www.encodeproject.org/files/ENCFF824GTA/@@download/ENCFF824GTA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF052QDS bed narrowPeak peaks ENCSR564YYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF157-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF008HXJ 6834006 ENCODE Processing Pipeline 797c794b7d348476e4375144b7b51f3c https://www.encodeproject.org/files/ENCFF052QDS/@@download/ENCFF052QDS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF985UBC bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF431ABA, ENCFF493QSH 5134983 ENCODE Processing Pipeline f1e0151dfd8b40fec2933c296e70c153 https://www.encodeproject.org/files/ENCFF985UBC/@@download/ENCFF985UBC.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF471MPD bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human DNA False 2016-06-23 ENCODE 1 ENCFF011MCR, ENCFF581ZJL 7133917 ENCODE Processing Pipeline eac7607be827468e48cf0c599196747a https://www.encodeproject.org/files/ENCFF471MPD/@@download/ENCFF471MPD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF853BNC bed narrowPeak peaks ENCSR825MZS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF15-human DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF580VRU, ENCFF759DNX, ENCFF951UMF 6178340 ENCODE Processing Pipeline 7e4ad537c954428eea973644de103769 https://www.encodeproject.org/files/ENCFF853BNC/@@download/ENCFF853BNC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF841ZJM bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 4896452 ENCODE Processing Pipeline aaa5da43b96e4c70a786ea337a51f0ee https://www.encodeproject.org/files/ENCFF841ZJM/@@download/ENCFF841ZJM.bed.gz hg19 released low read length, borderline replicate concordance ENCFF965OFQ bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 5138333 ENCODE Processing Pipeline ccd55d8ab868c1c9d2233bbe675e6445 https://www.encodeproject.org/files/ENCFF965OFQ/@@download/ENCFF965OFQ.bed.gz hg19 archived low read length, borderline replicate concordance ENCFF878CWL bed narrowPeak peaks ENCSR131FFJ ChIP-seq EFO:0005723 GM23248 cell line Homo sapiens EZH2-human DNA False 2018-03-09 ENCODE 1 ENCFF111AMD, ENCFF394XKE, ENCFF659TLW 5687086 ENCODE Processing Pipeline a2d65d75a886fbe48e31a444a2fd9610 https://www.encodeproject.org/files/ENCFF878CWL/@@download/ENCFF878CWL.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF355VTC bed narrowPeak peaks ENCSR387QUV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RELB-human DNA False 2017-02-21 ENCODE 1 ENCFF638SXI, ENCFF941TZZ 6873273 ENCODE Processing Pipeline bd46a08ed077ace5b8107ccd58e88758 https://www.encodeproject.org/files/ENCFF355VTC/@@download/ENCFF355VTC.bed.gz hg19 released file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity mismatched file status ENCFF945QWD bed narrowPeak peaks ENCSR769JRS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-AEBP2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF851EXP 6665928 ENCODE Processing Pipeline 379294826f69174b4b4dab69b67e1312 https://www.encodeproject.org/files/ENCFF945QWD/@@download/ENCFF945QWD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF611BUY bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF796HOG 7178552 ENCODE Processing Pipeline 0318f8b1097e2c3bce0291956fb04434 https://www.encodeproject.org/files/ENCFF611BUY/@@download/ENCFF611BUY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF967XPK bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human DNA False 2018-02-14 ENCODE 1 ENCFF160VXC, ENCFF528VXT 6699790 ENCODE Processing Pipeline 72163cc058f9eab1dd9b38183d499c79 https://www.encodeproject.org/files/ENCFF967XPK/@@download/ENCFF967XPK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF897BPO bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF214QGI, ENCFF493QSH 5697366 ENCODE Processing Pipeline d3bd0b546b414a6fbca8eefc9ff5495d https://www.encodeproject.org/files/ENCFF897BPO/@@download/ENCFF897BPO.bed.gz hg19 released low read length, low read depth, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF912PLZ bed narrowPeak peaks ENCSR243LNQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PRPF4-human DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF218HKO, ENCFF536AHS, ENCFF609QFO 5062563 ENCODE Processing Pipeline 28ec378a0da4bb98250d36f315999068 https://www.encodeproject.org/files/ENCFF912PLZ/@@download/ENCFF912PLZ.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001XLZ bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWZ 745367 John Stamatoyannopoulos, UW 581431e9ce2e232b2f1d85641d31ed78 https://www.encodeproject.org/files/ENCFF001XLZ/@@download/ENCFF001XLZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF299COL bed narrowPeak peaks ENCSR000DPP ChIP-seq NTR:0000479 AG09309 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF004OMB, ENCFF137BYR 3925324 ENCODE Processing Pipeline be75fd99a795d1e80cff9e274c320e41 https://www.encodeproject.org/files/ENCFF299COL/@@download/ENCFF299COL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms NTR biosample control insufficient read depth, insufficient read depth missing control alignments ENCFF417KAW bed narrowPeak peaks ENCSR240PRQ ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2017-10-19 ENCODE 1 ENCFF098SJQ, ENCFF420OJT, ENCFF467JND 6003450 ENCODE Processing Pipeline 682c4829a61fc9d745876d973a2cc3cf https://www.encodeproject.org/files/ENCFF417KAW/@@download/ENCFF417KAW.bed.gz hg19 released low read length, mixed run types, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF498TWK bed narrowPeak peaks ENCSR993DED ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF214-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF641XRH 6554065 ENCODE Processing Pipeline 2f33d48990c9f5872e123eb534154a60 https://www.encodeproject.org/files/ENCFF498TWK/@@download/ENCFF498TWK.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF938AEH bed narrowPeak peaks ENCSR697CUP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HCFC1-human DNA False 2016-02-16 ENCODE 1 ENCFF409MLU, ENCFF583FAG 6619002 ENCODE Processing Pipeline a7db975eef09f860be95d3defe5e290f https://www.encodeproject.org/files/ENCFF938AEH/@@download/ENCFF938AEH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF471IVB bed narrowPeak peaks ENCSR439WAF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF095GKP, ENCFF941TZZ 6201438 ENCODE Processing Pipeline 14c7c83fca1383b1ca696bb3b1e6943d https://www.encodeproject.org/files/ENCFF471IVB/@@download/ENCFF471IVB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF233FOV bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human DNA False 2016-06-13 ENCODE 1 ENCFF139MVO, ENCFF284BJY 6429901 ENCODE Processing Pipeline 17babe61f65b3c87ed973fd946ef985d https://www.encodeproject.org/files/ENCFF233FOV/@@download/ENCFF233FOV.bed.gz hg19 released missing genetic modification characterization ENCFF017ACO bed narrowPeak peaks ENCSR859JGF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATM-human DNA False 2017-05-18 ENCODE 1 ENCFF257CJR, ENCFF449NNE 6390407 ENCODE Processing Pipeline 9fed11b9e67d4c9e9b9cc10c2e793218 https://www.encodeproject.org/files/ENCFF017ACO/@@download/ENCFF017ACO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF581YXY bed narrowPeak peaks ENCSR217WRC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-TSHZ1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF010NVQ 6859066 ENCODE Processing Pipeline 67049dd6fa473c43aa5e65c67f6d1942 https://www.encodeproject.org/files/ENCFF581YXY/@@download/ENCFF581YXY.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF750QCA bed narrowPeak peaks ENCSR363XBR ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF488-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF824EPV 6442404 ENCODE Processing Pipeline b2ca1301c63e6ad441c538f7f03310ff https://www.encodeproject.org/files/ENCFF750QCA/@@download/ENCFF750QCA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF259GFJ bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human DNA False 2017-11-20 ENCODE 1 ENCFF098RVJ, ENCFF581ZJL 6608166 ENCODE Processing Pipeline be6550ae5866d12ab52518bf4a4365df https://www.encodeproject.org/files/ENCFF259GFJ/@@download/ENCFF259GFJ.bed.gz hg19 released experiment not submitted to GEO ENCFF804ZPQ bed narrowPeak peaks ENCSR707BNG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MYNN-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF297BVZ 6607910 ENCODE Processing Pipeline c3848129792150ebe33c3e7a09d097a0 https://www.encodeproject.org/files/ENCFF804ZPQ/@@download/ENCFF804ZPQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF902EUL bed narrowPeak peaks ENCSR739IHN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBX21-human DNA False 2016-06-14 ENCODE 1 ENCFF921QCO, ENCFF941TZZ 6093521 ENCODE Processing Pipeline 8f43c053ef4719e21c74b514be24f543 https://www.encodeproject.org/files/ENCFF902EUL/@@download/ENCFF902EUL.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF205PYK bed narrowPeak peaks ENCSR871KYB ChIP-seq EFO:0007950 GM23338 induced pluripotent stem cell line Homo sapiens REST-human DNA False 2018-03-06 ENCODE 1 ENCFF931MGR, ENCFF956QBZ 4564076 ENCODE Processing Pipeline da0cef82e0ce1a7837c392c184a983d3 https://www.encodeproject.org/files/ENCFF205PYK/@@download/ENCFF205PYK.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO unreplicated experiment ENCFF226PXS bed narrowPeak peaks ENCSR897ZXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens E2F8-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF966KGE 6030845 ENCODE Processing Pipeline 5e05072604fd7ecf5cbbaeaa3bbf5a07 https://www.encodeproject.org/files/ENCFF226PXS/@@download/ENCFF226PXS.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF747KPL bed narrowPeak peaks ENCSR185FOY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF341-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF512NLI 6964064 ENCODE Processing Pipeline 5aaa1597e639748756e28dfa745c3ca6 https://www.encodeproject.org/files/ENCFF747KPL/@@download/ENCFF747KPL.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF689MDM bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human DNA False 2017-11-14 ENCODE 1 ENCFF537OYZ, ENCFF581ZJL 6112109 ENCODE Processing Pipeline ba9ba9833b4606e9d3debe09a73a6551 https://www.encodeproject.org/files/ENCFF689MDM/@@download/ENCFF689MDM.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF228DXI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human DNA False 2018-02-14 ENCODE 1 ENCFF581ZJL, ENCFF640FIB 6296303 ENCODE Processing Pipeline 4ae1fa01ff3ce70111549ba834eb89a5 https://www.encodeproject.org/files/ENCFF228DXI/@@download/ENCFF228DXI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF020VZO bed narrowPeak peaks ENCSR330ADN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens DDX20-human DNA False 2017-06-29 ENCODE 1 ENCFF447KVS, ENCFF823USR, ENCFF884CLL 6099754 ENCODE Processing Pipeline 0ed27bb8af79240dfd976d8d5e1e81a1 https://www.encodeproject.org/files/ENCFF020VZO/@@download/ENCFF020VZO.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance ENCFF474LJV bed narrowPeak peaks ENCSR520VTO ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens EZH2-human DNA see document see document False 2017-11-19 ENCODE 1 ENCFF265DDE, ENCFF509ZPI, ENCFF977OUD 6111088 ENCODE Processing Pipeline 1447014b2b607134590318d2a0a7d1a0 https://www.encodeproject.org/files/ENCFF474LJV/@@download/ENCFF474LJV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF244UCV bed narrowPeak peaks ENCSR864VJE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZSCAN16-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF137ZVN 6638351 ENCODE Processing Pipeline 7b6158638645da5b560c0532a9b643a6 https://www.encodeproject.org/files/ENCFF244UCV/@@download/ENCFF244UCV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF918LYX bed narrowPeak peaks ENCSR619OUC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB6-human DNA formaldehyde False 2017-11-30 ENCODE 1 ENCFF518YKF 6757549 ENCODE Processing Pipeline f5b02d164db07cca0bc49f8bd2f4231d https://www.encodeproject.org/files/ENCFF918LYX/@@download/ENCFF918LYX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF853GEN bed narrowPeak peaks ENCSR217HTK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ATF2-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF201XXY 6544113 ENCODE Processing Pipeline fe8ad1a4922d122535b4752d2b4a1000 https://www.encodeproject.org/files/ENCFF853GEN/@@download/ENCFF853GEN.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF715SOH bed narrowPeak peaks ENCSR418MKG ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF692-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF631GFV 7202572 ENCODE Processing Pipeline b04a19b074d47a4629b96be42040a8b1 https://www.encodeproject.org/files/ENCFF715SOH/@@download/ENCFF715SOH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF773OIA bed narrowPeak peaks ENCSR365DQH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF211-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF093DMB 6070199 ENCODE Processing Pipeline c4889c8ab896fd8f7878afc05d64af71 https://www.encodeproject.org/files/ENCFF773OIA/@@download/ENCFF773OIA.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF306SXM bed narrowPeak peaks ENCSR664OKA ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens ELK1-human DNA False 2016-09-01 ENCODE 1 ENCFF422DHE, ENCFF880YHS 3733913 ENCODE Processing Pipeline a224326c7572386905d0b2f8fbdc381f https://www.encodeproject.org/files/ENCFF306SXM/@@download/ENCFF306SXM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity duplicate lane review ENCFF768KKE bed narrowPeak peaks ENCSR000AHD ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF479YGR, ENCFF719RCX, ENCFF754DME 5341806 ENCODE Processing Pipeline d74ba6964064a6af20aa766c161699f4 https://www.encodeproject.org/files/ENCFF768KKE/@@download/ENCFF768KKE.bed.gz hg19 released mild to moderate bottlenecking, low read depth ENCFF006UUP bed narrowPeak peaks ENCSR069DPL ChIP-seq NTR:0000711 neural progenitor cell in vitro differentiated cells Homo sapiens EZH2-human DNA False 2017-11-16 ENCODE 1 ENCFF387KXA, ENCFF725YPX, ENCFF762JSN 7277881 ENCODE Processing Pipeline 3f58fb8da032c56fc98e1777324a5056 https://www.encodeproject.org/files/ENCFF006UUP/@@download/ENCFF006UUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF827ONU bed narrowPeak peaks ENCSR072EUE ChIP-seq EFO:0005907 OCI-LY1 cell line Homo sapiens CTCF-human DNA see document see document False 2017-11-13 ENCODE 1 ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI 6330332 ENCODE Processing Pipeline 0addb58adbc441e8f0f1cb4d50308db0 https://www.encodeproject.org/files/ENCFF827ONU/@@download/ENCFF827ONU.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF716GBZ bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4513228 ENCODE Processing Pipeline 38f599db4f85e1edafe6c586428f50b8 https://www.encodeproject.org/files/ENCFF716GBZ/@@download/ENCFF716GBZ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF405AOP bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4718152 ENCODE Processing Pipeline 66a344d1223b1829dba0c2f3c5e1cc85 https://www.encodeproject.org/files/ENCFF405AOP/@@download/ENCFF405AOP.bed.gz hg19 archived low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF060XZX bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human DNA False 2016-07-28 ENCODE 1 ENCFF335IPE, ENCFF833DBR 4381264 ENCODE Processing Pipeline 383e6889efb44997cec370ab5d17c325 https://www.encodeproject.org/files/ENCFF060XZX/@@download/ENCFF060XZX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF041CMD bed narrowPeak peaks ENCSR231ENE ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ARID3A-human DNA False 2016-11-17 ENCODE 1 ENCFF049MPQ, ENCFF204XOT, ENCFF583FAG 6417161 ENCODE Processing Pipeline 2388e8251181efb72ad8fb0612e20314 https://www.encodeproject.org/files/ENCFF041CMD/@@download/ENCFF041CMD.bed.gz hg19 released borderline replicate concordance ENCFF105EGQ bed narrowPeak peaks ENCSR768LIO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-OVOL3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF607AVR 6653409 ENCODE Processing Pipeline 7f362707efe584afdda8759289944eaf https://www.encodeproject.org/files/ENCFF105EGQ/@@download/ENCFF105EGQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF291RVB bed narrowPeak peaks ENCSR487LUQ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens PHF8-human DNA False 2018-03-05 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF907MBX 6300866 ENCODE Processing Pipeline 3479240e6facbe7576f5e8b0e80ca315 https://www.encodeproject.org/files/ENCFF291RVB/@@download/ENCFF291RVB.bed.gz hg19 released low read length, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO ENCFF633FJC bed narrowPeak peaks ENCSR788XNX ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF293RDA, ENCFF583FAG 6343924 ENCODE Processing Pipeline b1116d315978a49710766d803a54c583 https://www.encodeproject.org/files/ENCFF633FJC/@@download/ENCFF633FJC.bed.gz hg19 released low read depth ENCFF212LGF bed narrowPeak peaks ENCSR134QIE ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZFP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF140LQJ 5885653 ENCODE Processing Pipeline 0fc8748144db8d5ab0cabda3415ea7a1 https://www.encodeproject.org/files/ENCFF212LGF/@@download/ENCFF212LGF.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF835IHR bed narrowPeak peaks ENCSR356ECR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBM22-human DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF373TTH, ENCFF431QLB 7064915 ENCODE Processing Pipeline 8dddd5e9548971eb9c7943dc7e39afbc https://www.encodeproject.org/files/ENCFF835IHR/@@download/ENCFF835IHR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity ENCFF703KWO bed narrowPeak peaks ENCSR927UJQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF391ZJP 6366861 ENCODE Processing Pipeline 83a4819247059579c054f2e5c44ba9dd https://www.encodeproject.org/files/ENCFF703KWO/@@download/ENCFF703KWO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF943FOK bed narrowPeak peaks ENCSR882ICT ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ZNF384-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF560YXG, ENCFF760DHW 6965873 ENCODE Processing Pipeline 32c9e395a5199e54f2f4e7264ba0cd46 https://www.encodeproject.org/files/ENCFF943FOK/@@download/ENCFF943FOK.bed.gz hg19 released ENCFF730BUV bed narrowPeak peaks ENCSR466VYP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF266-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF548EUS 6162234 ENCODE Processing Pipeline 4d5856ec3827854d423cfda22539cd1e https://www.encodeproject.org/files/ENCFF730BUV/@@download/ENCFF730BUV.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF678AGF bed narrowPeak peaks ENCSR141PZA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SP3-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF923TZZ 7043805 ENCODE Processing Pipeline e5e28a3c36de2bedfc33769b7541eab9 https://www.encodeproject.org/files/ENCFF678AGF/@@download/ENCFF678AGF.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF231QHZ bed narrowPeak peaks ENCSR041ZIQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-SALL1-human DNA formaldehyde False 2016-12-13 ENCODE 1 ENCFF151XJE 6304133 ENCODE Processing Pipeline 1b0ec212cbc234682f01ffb8fce8bb3b https://www.encodeproject.org/files/ENCFF231QHZ/@@download/ENCFF231QHZ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF012TME bed narrowPeak peaks ENCSR042TWZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens SNIP1-human DNA False 2017-06-23 ENCODE 1 ENCFF222WFW, ENCFF447KVS, ENCFF823USR 6153180 ENCODE Processing Pipeline 13d20948c87dcdc52b12601b72938cc3 https://www.encodeproject.org/files/ENCFF012TME/@@download/ENCFF012TME.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF298TZR bed narrowPeak peaks ENCSR711UOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF837-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF080KBG 6482467 ENCODE Processing Pipeline ba1b3edc6f337ec78a9d72cf4816d344 https://www.encodeproject.org/files/ENCFF298TZR/@@download/ENCFF298TZR.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF019TVN bed narrowPeak peaks ENCSR205SKQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YBX1-human DNA False 2016-08-24 ENCODE 1 ENCFF404VIO, ENCFF941TZZ 6167163 ENCODE Processing Pipeline 3ea79eef8b09498fa98e859900b7a667 https://www.encodeproject.org/files/ENCFF019TVN/@@download/ENCFF019TVN.bed.gz hg19 released file validation error, borderline replicate concordance, antibody characterized with exemption mismatched file status ENCFF816GZA bed narrowPeak peaks ENCSR145XQO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens HDGF-human DNA False 2016-08-24 ENCODE 1 ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ 7055337 ENCODE Processing Pipeline 24bd8f967eba6f9dec0cbc4183746bcc https://www.encodeproject.org/files/ENCFF816GZA/@@download/ENCFF816GZA.bed.gz hg19 released file validation error, antibody characterized with exemption mismatched file status ENCFF823KCQ bed narrowPeak peaks ENCSR228PGT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF292-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF828PXU 5963295 ENCODE Processing Pipeline 27331c2e2c00868ceb23a273c3bf3954 https://www.encodeproject.org/files/ENCFF823KCQ/@@download/ENCFF823KCQ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF946RUB bed narrowPeak peaks ENCSR966ULI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-PATZ1-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF847GYW 7014242 ENCODE Processing Pipeline 4ffc08cd494a32e0f971ade4c7c6c08f https://www.encodeproject.org/files/ENCFF946RUB/@@download/ENCFF946RUB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF269RYL bed narrowPeak peaks ENCSR163RYW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF189-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF014SGL, ENCFF182WHU 7251371 ENCODE Processing Pipeline ebc9d60199db8c009eb5b490bac21b09 https://www.encodeproject.org/files/ENCFF269RYL/@@download/ENCFF269RYL.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF953MKM bed narrowPeak peaks ENCSR461ZJT ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF501-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF231LLP 7182235 ENCODE Processing Pipeline 2679a0c52eccc9100ccbe40aed6f8450 https://www.encodeproject.org/files/ENCFF953MKM/@@download/ENCFF953MKM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF714YWI bed narrowPeak peaks ENCSR124AIG ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens FOS-human DNA False 2016-12-19 ENCODE 1 ENCFF111WZN, ENCFF880YHS 5092773 ENCODE Processing Pipeline 940cbab842c01fec6fd2bb43df582e2d https://www.encodeproject.org/files/ENCFF714YWI/@@download/ENCFF714YWI.bed.gz hg19 released low read length, low read depth duplicate lane review ENCFF313WJM bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF860EBI 6856971 ENCODE Processing Pipeline a0f9ce9c8a662389415db892470f3db3 https://www.encodeproject.org/files/ENCFF313WJM/@@download/ENCFF313WJM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF121FBN bed narrowPeak peaks ENCSR760UKJ ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens ARNT-human DNA False 2017-04-14 ENCODE 1 ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN 6297910 ENCODE Processing Pipeline 3ee91ea72d401a22aed1803105b3b309 https://www.encodeproject.org/files/ENCFF121FBN/@@download/ENCFF121FBN.bed.gz hg19 released mild to moderate bottlenecking ENCFF502WVO bed narrowPeak peaks ENCSR565XSL ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens EZH2phosphoT487-human DNA see document see document False 2018-02-06 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF983AFA 5704662 ENCODE Processing Pipeline 58578ac259133d6006f8943a34a9f144 https://www.encodeproject.org/files/ENCFF502WVO/@@download/ENCFF502WVO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths NTR biosample, experiment not submitted to GEO ENCFF536CTG bed narrowPeak peaks ENCSR265ARE ChIP-seq EFO:0007752 VCaP cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL 6924968 ENCODE Processing Pipeline c316c423c4fe09a672d22c1bbe4350ed https://www.encodeproject.org/files/ENCFF536CTG/@@download/ENCFF536CTG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF830EGQ bed narrowPeak peaks ENCSR689YFA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF146-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF680DKU 6892794 ENCODE Processing Pipeline acd4c2bfbfa4e26e52ec9dc218939e3b https://www.encodeproject.org/files/ENCFF830EGQ/@@download/ENCFF830EGQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF409HKO bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human DNA False 2016-08-05 ENCODE 1 ENCFF581ZJL, ENCFF737QLL 7041480 ENCODE Processing Pipeline 03f4452079d0de2dd45f193dde177e9a https://www.encodeproject.org/files/ENCFF409HKO/@@download/ENCFF409HKO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF661WDY bed narrowPeak peaks ENCSR517DDU ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF48-human DNA formaldehyde False 2016-10-14 ENCODE 1 ENCFF416AHQ 6331254 ENCODE Processing Pipeline 7dcaf709a3c0f60fc97b7f22ea5ec88b https://www.encodeproject.org/files/ENCFF661WDY/@@download/ENCFF661WDY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF862QRJ bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5524368 ENCODE Processing Pipeline 7782263881bcd6ed3afcd8274cfde3ef https://www.encodeproject.org/files/ENCFF862QRJ/@@download/ENCFF862QRJ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF223SSQ bed narrowPeak peaks ENCSR597VGC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ETV6-human DNA False 2014-07-07 ENCODE 1 ENCFF102NUJ, ENCFF941TZZ 5745543 ENCODE Processing Pipeline 5f02c18d1026eea8f39907bf8d697ec9 https://www.encodeproject.org/files/ENCFF223SSQ/@@download/ENCFF223SSQ.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF355LBT bed narrowPeak peaks ENCSR780OZE ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA see document see document False 2017-12-08 ENCODE 1 ENCFF349CTQ, ENCFF453BFT 5107706 ENCODE Processing Pipeline 5965f62be4f7afc2c177bccaa6812360 https://www.encodeproject.org/files/ENCFF355LBT/@@download/ENCFF355LBT.bed.gz hg19 released low read length, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF331EWI bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 6061709 ENCODE Processing Pipeline 6b5c1a30276be20896438a43bbae02db https://www.encodeproject.org/files/ENCFF331EWI/@@download/ENCFF331EWI.bed.gz hg19 released ENCFF380LCN bed narrowPeak peaks ENCSR557JTZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens GTF2F1-human DNA False 2014-07-07 ENCODE 1 ENCFF059RII, ENCFF583FAG 6221920 ENCODE Processing Pipeline 2e346273fc2abe47ed39399cd1e525b1 https://www.encodeproject.org/files/ENCFF380LCN/@@download/ENCFF380LCN.bed.gz hg19 archived ENCFF223NIO bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 5044012 ENCODE Processing Pipeline b85716ca28d3b4fae85361b75e46ee25 https://www.encodeproject.org/files/ENCFF223NIO/@@download/ENCFF223NIO.bed.gz hg19 released low read length ENCFF960PIA bed narrowPeak peaks ENCSR452YHM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SIN3B-human DNA False 2014-07-07 ENCODE 1 ENCFF785DZS, ENCFF863VMN 5334062 ENCODE Processing Pipeline 6c6c40d767dcc141a82a0286cf147280 https://www.encodeproject.org/files/ENCFF960PIA/@@download/ENCFF960PIA.bed.gz hg19 archived low read length ENCFF044AVI bed narrowPeak peaks ENCSR623KNM ChIP-seq EFO:0001086 A549 cell line Homo sapiens ELK1-human DNA False 2014-07-07 ENCODE 1 ENCFF035OKO, ENCFF863STQ 3769598 ENCODE Processing Pipeline d0e7813cc5fb470265ea607df89a1c7c https://www.encodeproject.org/files/ENCFF044AVI/@@download/ENCFF044AVI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance duplicate lane review ENCFF973BDU bed narrowPeak peaks ENCSR337NWW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA False 2016-10-14 ENCODE 1 ENCFF094VXQ, ENCFF449NNE 6388312 ENCODE Processing Pipeline c9f95953fcd2b1daed4779f4ac49debe https://www.encodeproject.org/files/ENCFF973BDU/@@download/ENCFF973BDU.bed.gz hg19 released ENCFF126FCR bed narrowPeak peaks ENCSR550ZZK ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF493-human DNA formaldehyde False 2016-12-19 ENCODE 1 ENCFF265DSL 6315928 ENCODE Processing Pipeline c9c9b9388c5b82ed02319ae48409aa7f https://www.encodeproject.org/files/ENCFF126FCR/@@download/ENCFF126FCR.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF835BHM bed narrowPeak peaks ENCSR419KSZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NCOR1-human DNA False 2017-03-13 ENCODE 1 ENCFF165PBN, ENCFF705NOL, ENCFF832OJP 6687654 ENCODE Processing Pipeline 3b3a04909c254073b8162ce6dd71f334 https://www.encodeproject.org/files/ENCFF835BHM/@@download/ENCFF835BHM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF609TCH bed narrowPeak peaks ENCSR768HOH ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF324-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF916SIK 6933902 ENCODE Processing Pipeline 83e7ce3af1886a00f09636fa2d9c59af https://www.encodeproject.org/files/ENCFF609TCH/@@download/ENCFF609TCH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF411FEE bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF641GTE, ENCFF654EHF, ENCFF991UTU 6604714 ENCODE Processing Pipeline 9f5421a40002adb4b322146e9a7d749e https://www.encodeproject.org/files/ENCFF411FEE/@@download/ENCFF411FEE.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF414TMK bed narrowPeak peaks ENCSR168SMX ChIP-seq UBERON:0002107 liver tissue Homo sapiens NR2F2-human DNA False 2016-08-18 ENCODE 1 ENCFF654EHF, ENCFF988MKR, ENCFF991UTU 6738216 ENCODE Processing Pipeline f0927c488d28f7e28dfe87553ea3db22 https://www.encodeproject.org/files/ENCFF414TMK/@@download/ENCFF414TMK.bed.gz hg19 archived antibody characterized with exemption biological replicates with identical biosample ENCFF045SMN bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH 6212068 ENCODE Processing Pipeline 4d303f0bcffe18274deecf13520dfd59 https://www.encodeproject.org/files/ENCFF045SMN/@@download/ENCFF045SMN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF768INF bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human DNA False 2014-07-07 ENCODE 1 ENCFF032JWA, ENCFF335IPE 4634504 ENCODE Processing Pipeline 60e806c1ceb638a3a0c87f1778337a5c https://www.encodeproject.org/files/ENCFF768INF/@@download/ENCFF768INF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF426PHX bed narrowPeak peaks ENCSR780ESQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-KLF14-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF024GDR 6678425 ENCODE Processing Pipeline 612138cae068f0c8f00e20355034589a https://www.encodeproject.org/files/ENCFF426PHX/@@download/ENCFF426PHX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF149YMO bed narrowPeak peaks ENCSR070HWF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF768-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF758FKR 6783639 ENCODE Processing Pipeline d1e8dc94adc8543703addfe0ebb31a68 https://www.encodeproject.org/files/ENCFF149YMO/@@download/ENCFF149YMO.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF020HWP bed narrowPeak peaks ENCSR352QSB ChIP-seq UBERON:0002107 liver tissue Homo sapiens RXRA-human DNA False 2017-12-01 ENCODE 1 ENCFF654EHF, ENCFF991UTU, ENCFF996GBL 6634671 ENCODE Processing Pipeline 0d09ae1e0cb8d35555e34cc86cf8e059 https://www.encodeproject.org/files/ENCFF020HWP/@@download/ENCFF020HWP.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF183ZGX bed narrowPeak peaks ENCSR559IOZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZXDB-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF440TNK 7128965 ENCODE Processing Pipeline cf824e36526ea91a4ceadd076c1a679a https://www.encodeproject.org/files/ENCFF183ZGX/@@download/ENCFF183ZGX.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF741JEM bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human DNA False 2017-11-13 ENCODE 1 ENCFF581ZJL, ENCFF613ITI 6082606 ENCODE Processing Pipeline e9cf509e0928ce9255a8ef9dbf14ea80 https://www.encodeproject.org/files/ENCFF741JEM/@@download/ENCFF741JEM.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF521INM bed narrowPeak peaks ENCSR897JAS ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CREB1-human DNA False 2016-07-08 ENCODE 1 ENCFF006NUZ, ENCFF049MPQ 6861644 ENCODE Processing Pipeline 69eef2d9139100c43c30084d19211fe5 https://www.encodeproject.org/files/ENCFF521INM/@@download/ENCFF521INM.bed.gz hg19 released ENCFF541BRL bed narrowPeak peaks ENCSR017QBI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF600-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF936RIU 7125164 ENCODE Processing Pipeline 91db03fbe4ae49f16c8960b71530eb58 https://www.encodeproject.org/files/ENCFF541BRL/@@download/ENCFF541BRL.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF715GRP bed narrowPeak peaks ENCSR360JOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CHD1-human DNA False 2016-07-28 ENCODE 1 ENCFF583FAG, ENCFF837GFI 6019778 ENCODE Processing Pipeline 4caedbe93addd28abae558017b0da657 https://www.encodeproject.org/files/ENCFF715GRP/@@download/ENCFF715GRP.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF367XOV bed narrowPeak peaks ENCSR066TET ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens RFX1-human DNA False 2016-06-23 ENCODE 1 ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI 7008420 ENCODE Processing Pipeline e2ce9fc675b4c8b24e51ac51d5066ae0 https://www.encodeproject.org/files/ENCFF367XOV/@@download/ENCFF367XOV.bed.gz hg19 released mild to moderate bottlenecking ENCFF779NYR bed narrowPeak peaks ENCSR109ODF ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens HES1-human DNA False 2017-04-14 ENCODE 1 ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG 6714629 ENCODE Processing Pipeline 25112968c261bdd39f067c631145dab9 https://www.encodeproject.org/files/ENCFF779NYR/@@download/ENCFF779NYR.bed.gz hg19 released ENCFF647BJJ bed narrowPeak peaks ENCSR727PIC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF34-human DNA formaldehyde False 2017-03-07 ENCODE 1 ENCFF171TVX, ENCFF182WHU 6743142 ENCODE Processing Pipeline cad6810dbfb5cab6d05d7e8e1ebc5ce2 https://www.encodeproject.org/files/ENCFF647BJJ/@@download/ENCFF647BJJ.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization, inconsistent platforms, moderate library complexity missing control alignments ENCFF102MCA bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF508DBG, ENCFF720NRD 6204011 ENCODE Processing Pipeline c40bd1cdd9037b825572839798363719 https://www.encodeproject.org/files/ENCFF102MCA/@@download/ENCFF102MCA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO ENCFF210FOA bed narrowPeak peaks ENCSR859RAO ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-YY1-human DNA formaldehyde False 2018-01-29 ENCODE 1 ENCFF089CUH 6984508 ENCODE Processing Pipeline 0067d4f1095dd5774a5da7a0d4ad4979 https://www.encodeproject.org/files/ENCFF210FOA/@@download/ENCFF210FOA.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF750XWP bed narrowPeak peaks ENCSR290SSQ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-MAZ-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF545NUA 7195544 ENCODE Processing Pipeline 3cb03aa711ebfff95d43d72c18132406 https://www.encodeproject.org/files/ENCFF750XWP/@@download/ENCFF750XWP.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization missing control alignments ENCFF695WCL bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6583780 ENCODE Processing Pipeline e6983af2a0a7532c4c8b4d4d3a1a9080 https://www.encodeproject.org/files/ENCFF695WCL/@@download/ENCFF695WCL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF596CWP bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6695065 ENCODE Processing Pipeline ef13e3b8be36e873b31da94086526824 https://www.encodeproject.org/files/ENCFF596CWP/@@download/ENCFF596CWP.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity ENCFF950LOX bed narrowPeak peaks ENCSR230ZWH ChIP-seq UBERON:0002107 liver tissue Homo sapiens RAD21-human DNA False 2016-10-12 ENCODE 1 ENCFF359TIO, ENCFF807CUF, ENCFF821FIW 6769628 ENCODE Processing Pipeline 21664ea95b8533ac6d45884f5355a655 https://www.encodeproject.org/files/ENCFF950LOX/@@download/ENCFF950LOX.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF854TVA bed narrowPeak peaks ENCSR000BND ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZEB1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF287GUR, ENCFF958RTR 1545002 ENCODE Processing Pipeline 05c2785006b632a687acc835696a4ad6 https://www.encodeproject.org/files/ENCFF854TVA/@@download/ENCFF854TVA.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, NTR biosample insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF799KEV bed narrowPeak peaks ENCSR543KOA ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB12-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF426PHO 6404269 ENCODE Processing Pipeline ec054a982908f6f64d45286319ea3d6d https://www.encodeproject.org/files/ENCFF799KEV/@@download/ENCFF799KEV.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF310CYQ bed narrowPeak peaks ENCSR009TKN ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RCOR1-human DNA False 2017-06-15 ENCODE 1 ENCFF650GFB, ENCFF764WTL 5739985 ENCODE Processing Pipeline f0e8d29440d7babf6587f2fa8f009564 https://www.encodeproject.org/files/ENCFF310CYQ/@@download/ENCFF310CYQ.bed.gz hg19 released low read length, antibody characterized with exemption ENCFF573ODA bed narrowPeak peaks ENCSR754SOI ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF529-human DNA formaldehyde False 2017-11-28 ENCODE 1 ENCFF994WEA 6178666 ENCODE Processing Pipeline d666cb4fc9d25a46db2cd949d4971301 https://www.encodeproject.org/files/ENCFF573ODA/@@download/ENCFF573ODA.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization experiment not submitted to GEO missing control alignments ENCFF018ZAD bed narrowPeak peaks ENCSR482BBZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-GLIS1-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF105YMD 6926023 ENCODE Processing Pipeline d5f969895a97b73c158e72cd162fb123 https://www.encodeproject.org/files/ENCFF018ZAD/@@download/ENCFF018ZAD.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF469FSE bed narrowPeak peaks ENCSR882ZTS ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZBTB11-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF583PRY 6657105 ENCODE Processing Pipeline 75ffa7c0093f0cc483f5d0866c69b568 https://www.encodeproject.org/files/ENCFF469FSE/@@download/ENCFF469FSE.bed.gz hg19 released low read depth, missing genetic modification characterization missing control alignments ENCFF884FCN bed narrowPeak peaks ENCSR551KAP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF138-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF698JDD 6586509 ENCODE Processing Pipeline 8d89b24a8c4d10ffe4897c90ecfd8a5e https://www.encodeproject.org/files/ENCFF884FCN/@@download/ENCFF884FCN.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF953KSE bed narrowPeak peaks ENCSR307CKC ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF680-human DNA formaldehyde False 2016-10-07 ENCODE 1 ENCFF985SIU 6721546 ENCODE Processing Pipeline fb32f4f4f97814d6901ed98aa003a0f8 https://www.encodeproject.org/files/ENCFF953KSE/@@download/ENCFF953KSE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF494VDO bed narrowPeak peaks ENCSR224QDY ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF121-human DNA formaldehyde False 2016-10-25 ENCODE 1 ENCFF182WHU, ENCFF605IDQ 7245620 ENCODE Processing Pipeline 312b276e8903eb3cb4d9a16cf726515d https://www.encodeproject.org/files/ENCFF494VDO/@@download/ENCFF494VDO.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF086DEW bed narrowPeak peaks ENCSR634OAQ ChIP-seq EFO:0001221 NCI-H929 cell line Homo sapiens CTCF-human DNA False 2017-11-29 ENCODE 1 ENCFF050WDN, ENCFF238MHO, ENCFF934QBD 6179336 ENCODE Processing Pipeline 97c599d1072e34bae8d4ead3ccbf6c97 https://www.encodeproject.org/files/ENCFF086DEW/@@download/ENCFF086DEW.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF519MIS bed narrowPeak peaks ENCSR541AMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF110XXU, ENCFF989ZJD, ENCFF995SUS 6828886 ENCODE Processing Pipeline 0d6b3d4ec9153dedd86eccc6fe80f475 https://www.encodeproject.org/files/ENCFF519MIS/@@download/ENCFF519MIS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO ENCFF222MCF bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF703DOA, ENCFF851QFR 5113942 ENCODE Processing Pipeline daa67ed21404762d9b3243f9edb73e63 https://www.encodeproject.org/files/ENCFF222MCF/@@download/ENCFF222MCF.bed.gz hg19 released low read length, low read depth experiment not submitted to GEO missing control alignments ENCFF875AMX bed narrowPeak peaks ENCSR823ADL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RFXANK-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF538ZFY 6820955 ENCODE Processing Pipeline 904a33bcfe940d634185e76021b4f8d6 https://www.encodeproject.org/files/ENCFF875AMX/@@download/ENCFF875AMX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF105ZTR bed narrowPeak peaks ENCSR569ARC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-NFYC-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF961FJC 6567691 ENCODE Processing Pipeline b3fb12b853cd7aa8bad6d9792f31818a https://www.encodeproject.org/files/ENCFF105ZTR/@@download/ENCFF105ZTR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF030PHB bed narrowPeak peaks ENCSR350ORK ChIP-seq UBERON:0002107 liver tissue Homo sapiens GABPA-human DNA False 2016-09-09 ENCODE 1 ENCFF336QNE, ENCFF991UTU 5635996 ENCODE Processing Pipeline 1eb2c8b251cda7f036a4aa014221b88a https://www.encodeproject.org/files/ENCFF030PHB/@@download/ENCFF030PHB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF721KHE bed narrowPeak peaks ENCSR000BQI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF275GCD, ENCFF382BNF 4408936 ENCODE Processing Pipeline c2ba84a109452733974208070d5e112d https://www.encodeproject.org/files/ENCFF721KHE/@@download/ENCFF721KHE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF891ZCM bed narrowPeak peaks ENCSR000BHC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZBTB33-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF958RTR, ENCFF963NKM 4235005 ENCODE Processing Pipeline f22938eb636e024178ae8d1a523c9bab https://www.encodeproject.org/files/ENCFF891ZCM/@@download/ENCFF891ZCM.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF676SDF bed narrowPeak peaks ENCSR616MOB ChIP-seq EFO:0001086 A549 cell line Homo sapiens CBX8-human DNA False 2016-11-23 ENCODE 1 ENCFF789JGE, ENCFF801GGG, ENCFF881DVS 6460065 ENCODE Processing Pipeline 2c05468f58323fcf2b3cdd26a82d2850 https://www.encodeproject.org/files/ENCFF676SDF/@@download/ENCFF676SDF.bed.gz hg19 released ENCFF301YHJ bed narrowPeak peaks ENCSR321BJQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens EHMT2-human DNA False 2016-11-23 ENCODE 1 ENCFF730KGN, ENCFF801GGG, ENCFF881DVS 5301933 ENCODE Processing Pipeline f3022c2761c611152dc15335a5f428f7 https://www.encodeproject.org/files/ENCFF301YHJ/@@download/ENCFF301YHJ.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF881TQQ bed narrowPeak peaks ENCSR933MHJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens KDM5A-human DNA False 2016-11-23 ENCODE 1 ENCFF355VOF, ENCFF801GGG, ENCFF881DVS 6709457 ENCODE Processing Pipeline 1d6cb2ba0770e5c7450addc03d449204 https://www.encodeproject.org/files/ENCFF881TQQ/@@download/ENCFF881TQQ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF332JOV bed narrowPeak peaks ENCSR897MMC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens JUNB-human DNA False 2016-06-13 ENCODE 1 ENCFF273TMW, ENCFF313NWV 5852019 ENCODE Processing Pipeline 808c26e98d7e74b9fb8bd0df63eea746 https://www.encodeproject.org/files/ENCFF332JOV/@@download/ENCFF332JOV.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF524UVY bed narrowPeak peaks ENCSR518WPL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NR2F6-human DNA False 2016-06-13 ENCODE 1 ENCFF108FPL, ENCFF574HZP, ENCFF969DYI 6249046 ENCODE Processing Pipeline be7e45a3892531cd835e47c75e9bd147 https://www.encodeproject.org/files/ENCFF524UVY/@@download/ENCFF524UVY.bed.gz hg19 released antibody characterized with exemption ENCFF327WVX bed narrowPeak peaks ENCSR997GPO ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens NFRKB-human DNA False 2016-11-17 ENCODE 1 ENCFF258YYG, ENCFF529BVI, ENCFF772FBN 6722915 ENCODE Processing Pipeline 6511f93ad87cabb1b0bea39e8dde0ea3 https://www.encodeproject.org/files/ENCFF327WVX/@@download/ENCFF327WVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001XQD bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HKJ 597913 John Stamatoyannopoulos, UW 30fb1e326e7a3565ea5b075187d289a5 https://www.encodeproject.org/files/ENCFF001XQD/@@download/ENCFF001XQD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF574BPV bed narrowPeak peaks ENCSR000DTI ChIP-seq CL:0000746 cardiac muscle cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF234EAH, ENCFF599WUT 4513051 ENCODE Processing Pipeline b1ba56e9d74ea6d4137505e05b3e4f0f https://www.encodeproject.org/files/ENCFF574BPV/@@download/ENCFF574BPV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF942SPR bed narrowPeak peaks ENCSR562POI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-THAP11-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF774TIB 6817291 ENCODE Processing Pipeline 2907ce317efaa297bc43c8ca0eb9cb74 https://www.encodeproject.org/files/ENCFF942SPR/@@download/ENCFF942SPR.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF113OOA bed narrowPeak peaks ENCSR000DOZ ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF153RSF, ENCFF502MJK 2989027 ENCODE Processing Pipeline 9d1607946b585c506f24c1218c08d025 https://www.encodeproject.org/files/ENCFF113OOA/@@download/ENCFF113OOA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF997LLV bed narrowPeak peaks ENCSR798EGJ ChIP-seq EFO:0001086 A549 cell line Homo sapiens RNF2-human DNA False 2016-11-23 ENCODE 1 ENCFF389WAT, ENCFF801GGG, ENCFF881DVS 5746566 ENCODE Processing Pipeline efb97110df368dba7ab6b54018e4d1a8 https://www.encodeproject.org/files/ENCFF997LLV/@@download/ENCFF997LLV.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF512TAK bed narrowPeak peaks ENCSR551ZDZ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MTA2-human DNA False 2016-06-14 ENCODE 1 ENCFF583FAG, ENCFF828SPJ 5439904 ENCODE Processing Pipeline ec642a5190a85614893a1b2ebc9bbeec https://www.encodeproject.org/files/ENCFF512TAK/@@download/ENCFF512TAK.bed.gz hg19 released borderline replicate concordance ENCFF291ZSM bed narrowPeak peaks ENCSR714YZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ETV4-human DNA False 2016-06-13 ENCODE 1 ENCFF396PIB, ENCFF969DYI, ENCFF994YBV 6122907 ENCODE Processing Pipeline 4b3f68225b59ddacfb95ce76fb8e4636 https://www.encodeproject.org/files/ENCFF291ZSM/@@download/ENCFF291ZSM.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF600JKB bed narrowPeak peaks ENCSR000BNJ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4G-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF674MDC 5131602 ENCODE Processing Pipeline 5d104bf3b5eaf30497d4e19ebd2ade92 https://www.encodeproject.org/files/ENCFF600JKB/@@download/ENCFF600JKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF680MAX bed narrowPeak peaks ENCSR000DNC ChIP-seq CL:0000312 keratinocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF235OMO, ENCFF455HQY, ENCFF568IYC 2565747 ENCODE Processing Pipeline 5809b16b5873fc653245eecdc613075a https://www.encodeproject.org/files/ENCFF680MAX/@@download/ENCFF680MAX.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF436EEZ bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF702MHE 6757441 ENCODE Processing Pipeline 43e8a65d9d33f9e5bf8e0dfaccc72e29 https://www.encodeproject.org/files/ENCFF436EEZ/@@download/ENCFF436EEZ.bed.gz hg19 released antibody characterized with exemption ENCFF977ZBK bed narrowPeak peaks ENCSR367UUC ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF187ZIE, ENCFF238ZIF 5415756 ENCODE Processing Pipeline 1f2e2e6ff176fedfed0ff0cba1bed2e3 https://www.encodeproject.org/files/ENCFF977ZBK/@@download/ENCFF977ZBK.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF385YDL bed narrowPeak peaks ENCSR151NQL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO2-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF209ZGU, ENCFF462KWM 6777882 ENCODE Processing Pipeline 648fb5db74aa102fefcccf4370bf6e41 https://www.encodeproject.org/files/ENCFF385YDL/@@download/ENCFF385YDL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF901YUN bed narrowPeak peaks ENCSR000BHB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF234DXO, ENCFF958RTR 4351005 ENCODE Processing Pipeline b23728d0a6808390a3eddef6eaf3e13b https://www.encodeproject.org/files/ENCFF901YUN/@@download/ENCFF901YUN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF558UKL bed narrowPeak peaks ENCSR541AOQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens PHF8-human DNA False 2016-11-23 ENCODE 1 ENCFF156ZIB, ENCFF801GGG, ENCFF881DVS 6839013 ENCODE Processing Pipeline 22906d7aa13866205bb3c18f274eeaf9 https://www.encodeproject.org/files/ENCFF558UKL/@@download/ENCFF558UKL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption ENCFF607MDM bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human DNA False 2018-01-26 ENCODE 1 ENCFF208FMF, ENCFF581ZJL 6879508 ENCODE Processing Pipeline 745e46fe25c71f7f3cc3aeec874591ee https://www.encodeproject.org/files/ENCFF607MDM/@@download/ENCFF607MDM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF416FBH bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human DNA False 2016-06-28 ENCODE 1 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD 6354589 ENCODE Processing Pipeline 9838d379404171f2fb9406628afb8ef6 https://www.encodeproject.org/files/ENCFF416FBH/@@download/ENCFF416FBH.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption ENCFF608QLM bed narrowPeak peaks ENCSR277BXW ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZBTB7B-human DNA False 2017-05-17 ENCODE 1 ENCFF055EFE, ENCFF583FAG 6424461 ENCODE Processing Pipeline 37608a9ff71aa0a8835790283f76c2d8 https://www.encodeproject.org/files/ENCFF608QLM/@@download/ENCFF608QLM.bed.gz hg19 released ENCFF492QMD bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF976PFK 4545903 ENCODE Processing Pipeline 0a0487aed9dc6fe659d246aa985ef4f2 https://www.encodeproject.org/files/ENCFF492QMD/@@download/ENCFF492QMD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF420LVZ bed narrowPeak peaks ENCSR000DZL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF780HMW 1202287 ENCODE Processing Pipeline 9a03c7827ce76a74f9da2efe2a493131 https://www.encodeproject.org/files/ENCFF420LVZ/@@download/ENCFF420LVZ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF735NAF bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF223OSD, ENCFF701KUD 2621077 ENCODE Processing Pipeline 2a64b523b1acf836ce4e073673ed2e2c https://www.encodeproject.org/files/ENCFF735NAF/@@download/ENCFF735NAF.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF515ZED bed narrowPeak peaks ENCSR000BPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225AWF, ENCFF864UEQ 6303636 ENCODE Processing Pipeline 9604b508b4449dfdef87a11d37edcb16 https://www.encodeproject.org/files/ENCFF515ZED/@@download/ENCFF515ZED.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample ENCFF327NKC bed narrowPeak peaks ENCSR000BPZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ZBTB33-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF226UHN, ENCFF864UEQ 5712784 ENCODE Processing Pipeline 891baaf476e37bdbaa60e7d39af1a6f4 https://www.encodeproject.org/files/ENCFF327NKC/@@download/ENCFF327NKC.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF001XSH bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HRO 880093 John Stamatoyannopoulos, UW 93514248ac0350e0a0c0d14b2c3bad78 https://www.encodeproject.org/files/ENCFF001XSH/@@download/ENCFF001XSH.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF412BGE bed narrowPeak peaks ENCSR000DVI ChIP-seq CL:0002586 retinal pigment epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF178SLS, ENCFF831AXW 4375823 ENCODE Processing Pipeline 6757cdb64666a5a94b6ff783a457ba11 https://www.encodeproject.org/files/ENCFF412BGE/@@download/ENCFF412BGE.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF164IAN bed narrowPeak peaks ENCSR000EBY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF275SJP, ENCFF599MVB 4078586 ENCODE Processing Pipeline 5bef68690b866c5d75668ac8ea9c4461 https://www.encodeproject.org/files/ENCFF164IAN/@@download/ENCFF164IAN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRH bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOF 680973 John Stamatoyannopoulos, UW a385ae340290877f3ab426ab963fb6b5 https://www.encodeproject.org/files/ENCFF001XRH/@@download/ENCFF001XRH.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF211MMB bed narrowPeak peaks ENCSR000DUM ChIP-seq EFO:0005710 HFF-Myc cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF060JAA, ENCFF198DHL 4437499 ENCODE Processing Pipeline 7cfbed440f61158aeef30feba19472d0 https://www.encodeproject.org/files/ENCFF211MMB/@@download/ENCFF211MMB.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking missing control alignments ENCFF546CXR bed narrowPeak peaks ENCSR000BOZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF080EVD, ENCFF463UJR 4984384 ENCODE Processing Pipeline 169155a13bffa2c6c60910b7437a4829 https://www.encodeproject.org/files/ENCFF546CXR/@@download/ENCFF546CXR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF415ZQD bed narrowPeak peaks ENCSR000BLS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF977AXY 5058184 ENCODE Processing Pipeline bf0d5046b7b4d57f1e3654576af1f494 https://www.encodeproject.org/files/ENCFF415ZQD/@@download/ENCFF415ZQD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF357MIU bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF922XZM 6322452 ENCODE Processing Pipeline 6bd5eb15d02d727dec9f873ffc478a67 https://www.encodeproject.org/files/ENCFF357MIU/@@download/ENCFF357MIU.bed.gz hg19 released low read length, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF803FZY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human DNA see document see document False 2014-07-07 ENCODE 1 ENCFF103CZU, ENCFF578ISP 5583357 ENCODE Processing Pipeline b465b7c2b84f5f8fb8b676d502b35b66 https://www.encodeproject.org/files/ENCFF803FZY/@@download/ENCFF803FZY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF392CTG bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human DNA False 2016-06-13 ENCODE 1 ENCFF054RVU, ENCFF285NOA 6823970 ENCODE Processing Pipeline 75c3cf7db837a69224afe8ae47622624 https://www.encodeproject.org/files/ENCFF392CTG/@@download/ENCFF392CTG.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF535RGW bed narrowPeak peaks ENCSR000BKD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF454STL 5341872 ENCODE Processing Pipeline bf292408039660e5ac574d732e4902ee https://www.encodeproject.org/files/ENCFF535RGW/@@download/ENCFF535RGW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF056RFC bed narrowPeak peaks ENCSR000EUP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAX-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF509ANO, ENCFF764OCO 1850944 ENCODE Processing Pipeline 52d0d1e1ab5acb6750034d8802f87d99 https://www.encodeproject.org/files/ENCFF056RFC/@@download/ENCFF056RFC.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length extremely low read depth ENCFF847FHY bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human DNA False 2017-01-27 ENCODE 1 ENCFF581ZJL, ENCFF866PHS 6320438 ENCODE Processing Pipeline 2aa8318060a352cb9fc918b08c5f97b7 https://www.encodeproject.org/files/ENCFF847FHY/@@download/ENCFF847FHY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF334VVP bed narrowPeak peaks ENCSR472VBD ChIP-seq UBERON:0001159 sigmoid colon tissue Homo sapiens POLR2A-human DNA False 2016-10-25 ENCODE 1 ENCFF362ALG, ENCFF882RAK 6421678 ENCODE Processing Pipeline 761c54ff736be3eab357a6cb3e2ab2f3 https://www.encodeproject.org/files/ENCFF334VVP/@@download/ENCFF334VVP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF124ZGQ bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF650WIA 6505261 ENCODE Processing Pipeline a84f6e7f61469eeb3bde492893558f04 https://www.encodeproject.org/files/ENCFF124ZGQ/@@download/ENCFF124ZGQ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF999RRH bed narrowPeak peaks ENCSR833FWC ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens CTCF-human DNA False 2016-10-25 ENCODE 1 ENCFF347PVY, ENCFF791LLR 6620179 ENCODE Processing Pipeline 038ec91b4e74e9a4e0334923115eabbb https://www.encodeproject.org/files/ENCFF999RRH/@@download/ENCFF999RRH.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF112OBU bed narrowPeak peaks ENCSR295BIP ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF777-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF272RAF 6692403 ENCODE Processing Pipeline b42158922bfe1653c81ff769b66c984f https://www.encodeproject.org/files/ENCFF112OBU/@@download/ENCFF112OBU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization missing control alignments ENCFF155WKH bed narrowPeak peaks ENCSR996DUT ChIP-seq EFO:0001086 A549 cell line Homo sapiens JUN-human DNA False 2014-07-07 ENCODE 1 ENCFF416AFC, ENCFF863STQ 4436264 ENCODE Processing Pipeline fde6209238af978fbcf2595e0e0d151f https://www.encodeproject.org/files/ENCFF155WKH/@@download/ENCFF155WKH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption ENCFF368DTT bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF454MRU, ENCFF650MOB 5165500 ENCODE Processing Pipeline b2516f78e2380fda0832e66adb41f82f https://www.encodeproject.org/files/ENCFF368DTT/@@download/ENCFF368DTT.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF434UXV bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human DNA False 2018-01-26 ENCODE 1 ENCFF078WRQ, ENCFF581ZJL 6121491 ENCODE Processing Pipeline 9e7a73b61fd9f2cad156317b4ebb9bea https://www.encodeproject.org/files/ENCFF434UXV/@@download/ENCFF434UXV.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF017OSU bed narrowPeak peaks ENCSR000BNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032GHF, ENCFF963CVB 5216391 ENCODE Processing Pipeline 5746764b38acb3c4e39b1660aad372a7 https://www.encodeproject.org/files/ENCFF017OSU/@@download/ENCFF017OSU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF713DFK bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF924KFO 6995781 ENCODE Processing Pipeline 7ac0da1320eb4d89fc2a472ee1b731e8 https://www.encodeproject.org/files/ENCFF713DFK/@@download/ENCFF713DFK.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO, out of date analysis partially characterized antibody ENCFF471HFA bed narrowPeak peaks ENCSR000BLB ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF102JFM, ENCFF279XQE 3936542 ENCODE Processing Pipeline 48ba54da133e20845e8b851440f51c27 https://www.encodeproject.org/files/ENCFF471HFA/@@download/ENCFF471HFA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF943DQA bed narrowPeak peaks ENCSR038RXU ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-GABPA-human DNA False 2016-06-13 ENCODE 1 ENCFF513LAW, ENCFF862PGC 5600429 ENCODE Processing Pipeline a65d91c6b7d634fbc7c41b44caf5c752 https://www.encodeproject.org/files/ENCFF943DQA/@@download/ENCFF943DQA.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF274KQN bed narrowPeak peaks ENCSR475SOC ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens eGFP-ELF1-human DNA False 2016-06-13 ENCODE 1 ENCFF275QSN, ENCFF708IMW 6425003 ENCODE Processing Pipeline 134bd6befc0c6c86a15c1fa9a116b1ca https://www.encodeproject.org/files/ENCFF274KQN/@@download/ENCFF274KQN.bed.gz hg19 released missing genetic modification characterization ENCFF900BSR bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF901AKT 6741528 ENCODE Processing Pipeline 58128ad5ec746ec21a387510fb287e67 https://www.encodeproject.org/files/ENCFF900BSR/@@download/ENCFF900BSR.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF054TZW bed narrowPeak peaks ENCSR000DZZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO 4520409 ENCODE Processing Pipeline def22d49fd1bea246ad3a6729ac518c9 https://www.encodeproject.org/files/ENCFF054TZW/@@download/ENCFF054TZW.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF566UPM bed narrowPeak peaks ENCSR484DDO ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF106EBG, ENCFF877TJY 5615141 ENCODE Processing Pipeline e03992ef808a39698d072763307d482a https://www.encodeproject.org/files/ENCFF566UPM/@@download/ENCFF566UPM.bed.gz hg19 released antibody characterized with exemption ENCFF684UEV bed narrowPeak peaks ENCSR897JCM ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF491-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF999XUY 6202037 ENCODE Processing Pipeline 5b91ad55f5e0ef1fa5501e74e917a780 https://www.encodeproject.org/files/ENCFF684UEV/@@download/ENCFF684UEV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF879SHG bed narrowPeak peaks ENCSR000BGD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF416BIN, ENCFF818ZLY, ENCFF865BUP 6758714 ENCODE Processing Pipeline 5e93c7295b5b593f91a509b6fe23f11b https://www.encodeproject.org/files/ENCFF879SHG/@@download/ENCFF879SHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF988BKX bed narrowPeak peaks ENCSR000BMN ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF647PGL 3447852 ENCODE Processing Pipeline e23cbea553f3d4f38788cfd9a7e5777b https://www.encodeproject.org/files/ENCFF988BKX/@@download/ENCFF988BKX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF237QGI bed narrowPeak peaks ENCSR000EDX ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF131TEK 6208729 ENCODE Processing Pipeline a09059c938a3b07611df181b27eaa3f8 https://www.encodeproject.org/files/ENCFF237QGI/@@download/ENCFF237QGI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPT bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIY 751126 John Stamatoyannopoulos, UW d32edfa447bcab78bd7f12633f2917a3 https://www.encodeproject.org/files/ENCFF001XPT/@@download/ENCFF001XPT.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF729AWY bed narrowPeak peaks ENCSR000DSU ChIP-seq CL:0002606 astrocyte of the spinal cord primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF644FRD, ENCFF686TPQ 4174778 ENCODE Processing Pipeline ace2ec52cf2dfa4692feb164ebf7958a https://www.encodeproject.org/files/ENCFF729AWY/@@download/ENCFF729AWY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF714FTS bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359UWD, ENCFF710NTS 3707352 ENCODE Processing Pipeline 0a5fdaca0482075d611610ccfc931034 https://www.encodeproject.org/files/ENCFF714FTS/@@download/ENCFF714FTS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF508MDN bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human DNA False 2017-01-27 ENCODE 1 ENCFF518TII, ENCFF581ZJL 6690900 ENCODE Processing Pipeline 04bd69cb516b2ca5310ee105263c240d https://www.encodeproject.org/files/ENCFF508MDN/@@download/ENCFF508MDN.bed.gz hg19 released low read depth ENCFF891UIQ bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF676EUR 7092260 ENCODE Processing Pipeline a67287c32c3af5831e07a97dd0c47456 https://www.encodeproject.org/files/ENCFF891UIQ/@@download/ENCFF891UIQ.bed.gz hg19 released ENCFF618WVP bed narrowPeak peaks ENCSR000DKN ChIP-seq EFO:0002782 H54 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF424BXF, ENCFF440WDV 5442002 ENCODE Processing Pipeline df187c63a8ffb1ad9e723b1aa0a518ad https://www.encodeproject.org/files/ENCFF618WVP/@@download/ENCFF618WVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF383NCL bed narrowPeak peaks ENCSR430TEE ChIP-seq UBERON:0004264 lower leg skin tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF553WEE, ENCFF773QXS 4852087 ENCODE Processing Pipeline 88ab6ea26eedfdb4b74aabdcc2816b3e https://www.encodeproject.org/files/ENCFF383NCL/@@download/ENCFF383NCL.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF972PDN bed narrowPeak peaks ENCSR000BGE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY 4984004 ENCODE Processing Pipeline 96eceb07f8556ee2b0b3adf000ed21c5 https://www.encodeproject.org/files/ENCFF972PDN/@@download/ENCFF972PDN.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF216OFC bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF868URB 7046613 ENCODE Processing Pipeline 46d98ee5e5f4ed73ee11ee9bf5aa5bd7 https://www.encodeproject.org/files/ENCFF216OFC/@@download/ENCFF216OFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF868DFG bed narrowPeak peaks ENCSR714JRB ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2016-11-09 ENCODE 1 ENCFF401GWQ, ENCFF698NVU 6107575 ENCODE Processing Pipeline e9fda8f51dade07b143e938bdc7092b6 https://www.encodeproject.org/files/ENCFF868DFG/@@download/ENCFF868DFG.bed.gz hg19 released antibody characterized with exemption ENCFF890UER bed narrowPeak peaks ENCSR000EDY ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF100HQM, ENCFF107SKX 4498189 ENCODE Processing Pipeline 0c7c651eacc8d99e9bf02c9351327825 https://www.encodeproject.org/files/ENCFF890UER/@@download/ENCFF890UER.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF997MQT bed narrowPeak peaks ENCSR000BMO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF587IJL 5132126 ENCODE Processing Pipeline 5ca2e6d07e1b6f5a6600f2c6724c35d7 https://www.encodeproject.org/files/ENCFF997MQT/@@download/ENCFF997MQT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF423FMQ bed narrowPeak peaks ENCSR000EUL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF289RZG, ENCFF420MOQ 4062549 ENCODE Processing Pipeline 0db29d195cd81743099c7368d530b510 https://www.encodeproject.org/files/ENCFF423FMQ/@@download/ENCFF423FMQ.bed.gz hg19 released borderline replicate concordance, low read depth control insufficient read depth, insufficient read length ENCFF001XSZ bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 735831 John Stamatoyannopoulos, UW 3fa9131f818463a639f99a3a80fc74a0 https://www.encodeproject.org/files/ENCFF001XSZ/@@download/ENCFF001XSZ.bed.gz hg19 archived low read length, low read depth ENCFF002DDL bed narrowPeak optimal idr thresholded peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUI 726401 ENCODE Consortium Analysis Working Group 8424eaf10728844d829f289c279d647d https://www.encodeproject.org/files/ENCFF002DDL/@@download/ENCFF002DDL.bed.gz hg19 archived low read length, low read depth ENCFF049FHU bed narrowPeak peaks ENCSR000DWN ChIP-seq EFO:0002798 NB4 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF010VRA, ENCFF522BQD 4293374 ENCODE Processing Pipeline edcc1b894b2997953c0901cfac670f49 https://www.encodeproject.org/files/ENCFF049FHU/@@download/ENCFF049FHU.bed.gz hg19 released low read length, low read depth ENCFF951TLZ bed narrowPeak peaks ENCSR000BKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF651UZJ, ENCFF963CVB 3978804 ENCODE Processing Pipeline 331ed73930e4199b54d6e1ee1cfaac72 https://www.encodeproject.org/files/ENCFF951TLZ/@@download/ENCFF951TLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF549YBI bed narrowPeak peaks ENCSR000BJG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF455VKD, ENCFF472OOV 4308309 ENCODE Processing Pipeline 20a9468b3b2846e2aad3ced78d6492ce https://www.encodeproject.org/files/ENCFF549YBI/@@download/ENCFF549YBI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF774DGH bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human DNA False 2016-03-30 ENCODE 1 ENCFF444TNY, ENCFF847YDJ, ENCFF875XTU 5923453 ENCODE Processing Pipeline 1c68465e3c10cf7ca801edb567c6a1c8 https://www.encodeproject.org/files/ENCFF774DGH/@@download/ENCFF774DGH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF395EZO bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF936IVO 2031796 ENCODE Processing Pipeline 044c3443fb18e648aac8a508ae8bf281 https://www.encodeproject.org/files/ENCFF395EZO/@@download/ENCFF395EZO.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF121MTK bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human DNA False 2017-07-28 ENCODE 1 ENCFF430WVD, ENCFF581ZJL 6704094 ENCODE Processing Pipeline 20566f46bdabc2b040fa2bb4ccdc8a32 https://www.encodeproject.org/files/ENCFF121MTK/@@download/ENCFF121MTK.bed.gz hg19 released ENCFF001UTQ bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1397830 Vishwanath Iyer, UTA 95394af7bd63442938449bc55a19bea7 https://www.encodeproject.org/files/ENCFF001UTQ/@@download/ENCFF001UTQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity ENCFF657PRI bed narrowPeak peaks ENCSR000DMO ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF468DTD, ENCFF602XLT 5506321 ENCODE Processing Pipeline 8f5896746d6ba3fface5a84081aac73d https://www.encodeproject.org/files/ENCFF657PRI/@@download/ENCFF657PRI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample poor library complexity ENCFF222SMQ bed narrowPeak peaks ENCSR808FFI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZKSCAN8-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF466RAE 6933950 ENCODE Processing Pipeline 61b2379816819fb8c6d3c36a8de0431a https://www.encodeproject.org/files/ENCFF222SMQ/@@download/ENCFF222SMQ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF838ATU bed narrowPeak peaks ENCSR000BQL ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFATC1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF867LOD 6851894 ENCODE Processing Pipeline 5c5595269451619d2c31fc7ccea14596 https://www.encodeproject.org/files/ENCFF838ATU/@@download/ENCFF838ATU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF994VHQ bed narrowPeak peaks ENCSR038XIA ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF444-human DNA False 2018-01-26 ENCODE 1 ENCFF583FAG, ENCFF880BYE 6865216 ENCODE Processing Pipeline f513f1e4f4fc06faa70412fb4d6a9253 https://www.encodeproject.org/files/ENCFF994VHQ/@@download/ENCFF994VHQ.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF886HLJ bed narrowPeak peaks ENCSR000EFH ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF039HBE, ENCFF191DFR, ENCFF601AUG 5774824 ENCODE Processing Pipeline 4225baa13e5ecc5237a91792904b6ead https://www.encodeproject.org/files/ENCFF886HLJ/@@download/ENCFF886HLJ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XPD bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGN 685062 John Stamatoyannopoulos, UW ff0f6bb5b4c9747546ac480a8d194136 https://www.encodeproject.org/files/ENCFF001XPD/@@download/ENCFF001XPD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF445XBY bed narrowPeak peaks ENCSR000DRR ChIP-seq EFO:0001161 GM12874 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF044UKM, ENCFF331ASK 2213661 ENCODE Processing Pipeline 1adacb413dab633ea043a244efc1c721 https://www.encodeproject.org/files/ENCFF445XBY/@@download/ENCFF445XBY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF557TKJ bed narrowPeak peaks ENCSR000BJE ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060XMV, ENCFF958RTR 3926265 ENCODE Processing Pipeline 050cc271a271744bf736fd530aad10d0 https://www.encodeproject.org/files/ENCFF557TKJ/@@download/ENCFF557TKJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF125FFS bed narrowPeak peaks ENCSR018MQH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens ZNF579-human DNA False 2017-03-08 ENCODE 1 ENCFF322TLP, ENCFF447KVS, ENCFF823USR 6939064 ENCODE Processing Pipeline 47e2a13ecd1961869ed3310fcfc80d3a https://www.encodeproject.org/files/ENCFF125FFS/@@download/ENCFF125FFS.bed.gz hg19 released mild to moderate bottlenecking, inconsistent platforms, moderate library complexity ENCFF357WXQ bed narrowPeak peaks ENCSR000ARE ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF062WDT, ENCFF355LBA, ENCFF903ATW 6636227 ENCODE Processing Pipeline 47d1c1776d43491eead30f8b588a0318 https://www.encodeproject.org/files/ENCFF357WXQ/@@download/ENCFF357WXQ.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms ENCFF611TJW bed narrowPeak peaks ENCSR142IGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-CEBPA-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF829CNY 6477887 ENCODE Processing Pipeline 226b1cafb0c2332c9b930e60b801ff64 https://www.encodeproject.org/files/ENCFF611TJW/@@download/ENCFF611TJW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF675GZY bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF353HYR, ENCFF710NTS 4975729 ENCODE Processing Pipeline fdd0e953af4503ea9b37a6a43e52ce4c https://www.encodeproject.org/files/ENCFF675GZY/@@download/ENCFF675GZY.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF565JQY bed narrowPeak peaks ENCSR000BHD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF837IOW, ENCFF917NZU 4541244 ENCODE Processing Pipeline 2b0974ffd44803847aca1d83fa6607fd https://www.encodeproject.org/files/ENCFF565JQY/@@download/ENCFF565JQY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF247OWV bed narrowPeak peaks ENCSR000BPS ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ATF3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF214OIG, ENCFF864UEQ 6100074 ENCODE Processing Pipeline 5746dd037249b5a268b02ecb52543883 https://www.encodeproject.org/files/ENCFF247OWV/@@download/ENCFF247OWV.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF365ZGD bed narrowPeak peaks ENCSR184SVO ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZBTB26-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF454AYY 6859543 ENCODE Processing Pipeline f1632e4dc7f3997b93294987f5d079d5 https://www.encodeproject.org/files/ENCFF365ZGD/@@download/ENCFF365ZGD.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF851EOI bed narrowPeak peaks ENCSR000BOX ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF523END 4897265 ENCODE Processing Pipeline f8533364cceb83c5cbf853228bd08260 https://www.encodeproject.org/files/ENCFF851EOI/@@download/ENCFF851EOI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF495SZK bed narrowPeak peaks ENCSR704IGU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZGPAT-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF988EJM 7106587 ENCODE Processing Pipeline 90983671da0212dcd841eebfa680e2c7 https://www.encodeproject.org/files/ENCFF495SZK/@@download/ENCFF495SZK.bed.gz hg19 released mild to moderate bottlenecking, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF925WYW bed narrowPeak peaks ENCSR000BQO ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOSL2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF864UEQ, ENCFF983PHR 5774604 ENCODE Processing Pipeline 7b1cb45dd16f7fbfe612b1b25fdab223 https://www.encodeproject.org/files/ENCFF925WYW/@@download/ENCFF925WYW.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample missing control alignments ENCFF792BHA bed narrowPeak peaks ENCSR000BQP ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF158ZUT, ENCFF864UEQ 6317626 ENCODE Processing Pipeline 6601f4134aebaa475a1a9a0736510c47 https://www.encodeproject.org/files/ENCFF792BHA/@@download/ENCFF792BHA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF467GRI bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF703RUQ 3615122 ENCODE Processing Pipeline dc0cfa0a67c7c5b32f08bf16d2422fc9 https://www.encodeproject.org/files/ENCFF467GRI/@@download/ENCFF467GRI.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF873CLE bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF457SCP, ENCFF998GMZ 2276128 ENCODE Processing Pipeline 41c577d36fc12da6bd7db479b80ba431 https://www.encodeproject.org/files/ENCFF873CLE/@@download/ENCFF873CLE.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF607IFK bed narrowPeak peaks ENCSR000BIY ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens estradiol 10 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF312WJL, ENCFF902HRT 4314834 ENCODE Processing Pipeline 1c7696a434ceb7f729b43c8829d54da5 https://www.encodeproject.org/files/ENCFF607IFK/@@download/ENCFF607IFK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF591IMY bed narrowPeak peaks ENCSR000BRD ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF336HSE, ENCFF540RWT 4548314 ENCODE Processing Pipeline 798f793a84f1e3af58a15813a23217b0 https://www.encodeproject.org/files/ENCFF591IMY/@@download/ENCFF591IMY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF702WPJ bed narrowPeak peaks ENCSR000BIP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF756YAE 3568604 ENCODE Processing Pipeline 71929a7a0a5c589ffb5ea443f2a8db03 https://www.encodeproject.org/files/ENCFF702WPJ/@@download/ENCFF702WPJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF622MMP bed narrowPeak peaks ENCSR699ZGH ChIP-seq UBERON:0002084 heart left ventricle tissue Homo sapiens POLR2A-human DNA False 2017-03-14 ENCODE 1 ENCFF447ZPV, ENCFF643EGO 4887840 ENCODE Processing Pipeline 9849ed51ac76163eb2766f9f421b039f https://www.encodeproject.org/files/ENCFF622MMP/@@download/ENCFF622MMP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF487OYC bed narrowPeak peaks ENCSR000BIE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF249IWE, ENCFF346RZT 4558024 ENCODE Processing Pipeline e6182e7855053208ac2899d09d72a51b https://www.encodeproject.org/files/ENCFF487OYC/@@download/ENCFF487OYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF620MYW bed narrowPeak peaks ENCSR000EDW ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF034NHE, ENCFF107SKX 4762614 ENCODE Processing Pipeline e6558f5adf0ae6e46c38fc48cd8e2ba7 https://www.encodeproject.org/files/ENCFF620MYW/@@download/ENCFF620MYW.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF909EYB bed narrowPeak peaks ENCSR000DZJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF758YOO 4529276 ENCODE Processing Pipeline 6afa95a3f0616f7314b161ca4616b275 https://www.encodeproject.org/files/ENCFF909EYB/@@download/ENCFF909EYB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF831QNI bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF725HAK 6882452 ENCODE Processing Pipeline b636262d4059d2227749aab51878ac9d https://www.encodeproject.org/files/ENCFF831QNI/@@download/ENCFF831QNI.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF574RRB bed narrowPeak peaks ENCSR000DZK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF898ZMA 5189428 ENCODE Processing Pipeline 6b8c83bba58d4be8d759522b6ad65ed2 https://www.encodeproject.org/files/ENCFF574RRB/@@download/ENCFF574RRB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF670YGF bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF526XKG, ENCFF710NTS 4642099 ENCODE Processing Pipeline 24a9177cb658f07a69141642ad4c3cf1 https://www.encodeproject.org/files/ENCFF670YGF/@@download/ENCFF670YGF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF935ZZG bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF851ZZA 4131199 ENCODE Processing Pipeline 6fc0d16772ba997c26d354f701fbefce https://www.encodeproject.org/files/ENCFF935ZZG/@@download/ENCFF935ZZG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRE bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 718569 John Stamatoyannopoulos, UW aacb1925e2474e71d34ee1b580cb620c https://www.encodeproject.org/files/ENCFF001XRE/@@download/ENCFF001XRE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF002DCY bed narrowPeak optimal idr thresholded peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HNZ 680211 ENCODE Consortium Analysis Working Group e3c022ea9f7be7acf4d1ea7ccf3b03e6 https://www.encodeproject.org/files/ENCFF002DCY/@@download/ENCFF002DCY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF017PXX bed narrowPeak peaks ENCSR000DUH ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF357OBP, ENCFF863WTF 3710075 ENCODE Processing Pipeline 1729cdd7966de8407ccc6a0f14a7c604 https://www.encodeproject.org/files/ENCFF017PXX/@@download/ENCFF017PXX.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF227YDJ bed narrowPeak peaks ENCSR000EDZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF211KFP 5428595 ENCODE Processing Pipeline 2e18da9b55e25b5f4de4c72d10681cc9 https://www.encodeproject.org/files/ENCFF227YDJ/@@download/ENCFF227YDJ.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF562ZXJ bed narrowPeak peaks ENCSR000BGF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY 4668469 ENCODE Processing Pipeline ebde3d9c6eff4885283b7b709f7f18d5 https://www.encodeproject.org/files/ENCFF562ZXJ/@@download/ENCFF562ZXJ.bed.gz hg19 released low read length, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF692VTI bed narrowPeak peaks ENCSR000DYX ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF372ODE, ENCFF545DZO 4414224 ENCODE Processing Pipeline c25d5385f6861ecaa2f17068e46a38a9 https://www.encodeproject.org/files/ENCFF692VTI/@@download/ENCFF692VTI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF510UIU bed narrowPeak peaks ENCSR000BMY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF311CJK, ENCFF963CVB 3261181 ENCODE Processing Pipeline cf4faead6c6f80b199f1a699ec3d60c0 https://www.encodeproject.org/files/ENCFF510UIU/@@download/ENCFF510UIU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF469IRK bed narrowPeak peaks ENCSR000EEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF082FBL, ENCFF107SKX 5135482 ENCODE Processing Pipeline a37810152484723f62e1ff25a439db4c https://www.encodeproject.org/files/ENCFF469IRK/@@download/ENCFF469IRK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF711NWL bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ 2689320 ENCODE Processing Pipeline 4c85eb9984b66a7cc5fcda6d28d945d0 https://www.encodeproject.org/files/ENCFF711NWL/@@download/ENCFF711NWL.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF479ZWB bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF826BOX 5855561 ENCODE Processing Pipeline edd9eb1c92b6ea69c50d79c78e91dcc7 https://www.encodeproject.org/files/ENCFF479ZWB/@@download/ENCFF479ZWB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF971SGR bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347FTA, ENCFF710NTS 5103569 ENCODE Processing Pipeline db8c61fb2f09825b33c89d66fc02a24a https://www.encodeproject.org/files/ENCFF971SGR/@@download/ENCFF971SGR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF927WFK bed narrowPeak peaks ENCSR000DYQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ESRRA-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF267FMB, ENCFF378YAW, ENCFF384RBC 4742873 ENCODE Processing Pipeline dec30187d31bd754807fc4bf02bebd8d https://www.encodeproject.org/files/ENCFF927WFK/@@download/ENCFF927WFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF335YRO bed narrowPeak peaks ENCSR596FEL ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-RBPJ-human DNA False 2018-02-10 ENCODE 1 ENCFF430YAL 6779451 ENCODE Processing Pipeline 37e9c4c7aab88c6b372b5d3b4238137c https://www.encodeproject.org/files/ENCFF335YRO/@@download/ENCFF335YRO.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF388ATO bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ZPM, ENCFF710NTS 6963167 ENCODE Processing Pipeline 194e237e1eb582828183e76472f0d467 https://www.encodeproject.org/files/ENCFF388ATO/@@download/ENCFF388ATO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF245IKC bed narrowPeak peaks ENCSR000DOP ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 12.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF028RMR, ENCFF425RUE 5868487 ENCODE Processing Pipeline 8052012c41491919ea968fdd32b5b5c7 https://www.encodeproject.org/files/ENCFF245IKC/@@download/ENCFF245IKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample, duplicate lane review ENCFF001USQ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1237271 Vishwanath Iyer, UTA 77b2e33066eabb4c798a3872b8a72c11 https://www.encodeproject.org/files/ENCFF001USQ/@@download/ENCFF001USQ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF128FLJ bed narrowPeak peaks ENCSR000DLG ChIP-seq EFO:0005352 GM20000 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF314ZWW, ENCFF583JRS 3202670 ENCODE Processing Pipeline 6b23ef5f49d5867875852f50eb8c9c2c https://www.encodeproject.org/files/ENCFF128FLJ/@@download/ENCFF128FLJ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth missing control alignments ENCFF001UTR bed narrowPeak peaks ENCSR000DML ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1201586 Vishwanath Iyer, UTA 44b518e1404ae5f3b5ab8c9aeafaca71 https://www.encodeproject.org/files/ENCFF001UTR/@@download/ENCFF001UTR.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF317AIN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF042SFT, ENCFF710NTS 4992350 ENCODE Processing Pipeline 9fe7d779b69b121ed7b469075d758d9e https://www.encodeproject.org/files/ENCFF317AIN/@@download/ENCFF317AIN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF701OSU bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189XLI, ENCFF701KUD 2427491 ENCODE Processing Pipeline ecadcaf2b4c40e427cd5818e778ecdad https://www.encodeproject.org/files/ENCFF701OSU/@@download/ENCFF701OSU.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF304RUP bed narrowPeak peaks ENCSR000EEA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF212ITE 4869264 ENCODE Processing Pipeline 77f7c98cc30fb528074854e7ee61e981 https://www.encodeproject.org/files/ENCFF304RUP/@@download/ENCFF304RUP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF001UTM bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 456240 Vishwanath Iyer, UTA 2264dbd85b777cefec625966d59f9942 https://www.encodeproject.org/files/ENCFF001UTM/@@download/ENCFF001UTM.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF808TOF bed narrowPeak peaks ENCSR000DMJ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF525AMA, ENCFF602XLT 5897919 ENCODE Processing Pipeline 1bcf0fd9c15dd5d5bf653b17de022d59 https://www.encodeproject.org/files/ENCFF808TOF/@@download/ENCFF808TOF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF664LLB bed narrowPeak peaks ENCSR000BLL ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF960JYT 4118885 ENCODE Processing Pipeline 214ffc454a6936c248f2e3f08437b859 https://www.encodeproject.org/files/ENCFF664LLB/@@download/ENCFF664LLB.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample insufficient replicate concordance ENCFF792BGD bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human DNA False 2016-11-10 ENCODE 1 ENCFF261IPD, ENCFF581ZJL 7131811 ENCODE Processing Pipeline 67d81b44082df3acf776e6da2c5fab41 https://www.encodeproject.org/files/ENCFF792BGD/@@download/ENCFF792BGD.bed.gz hg19 released ENCFF197HUM bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human DNA False 2018-01-26 ENCODE 1 ENCFF456JRF, ENCFF581ZJL 6595225 ENCODE Processing Pipeline 314fa2ec3f2fc8d3c666dddc9f99c89b https://www.encodeproject.org/files/ENCFF197HUM/@@download/ENCFF197HUM.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF319WWO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF447POJ, ENCFF710NTS 4912704 ENCODE Processing Pipeline 3a6b86cbec7a587932391516e814c285 https://www.encodeproject.org/files/ENCFF319WWO/@@download/ENCFF319WWO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF259PLY bed narrowPeak peaks ENCSR000EXH ChIP-seq EFO:0005236 NT2/D1 cell line Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF205KMO, ENCFF928FQV 4762382 ENCODE Processing Pipeline 3def866451a27f2be8ce01fa5397caa0 https://www.encodeproject.org/files/ENCFF259PLY/@@download/ENCFF259PLY.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF333CPM bed narrowPeak peaks ENCSR000DNN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFYA-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF282HGE, ENCFF545DZO 51982 ENCODE Processing Pipeline bc68e65a7b622a6d8503502a6f6859f5 https://www.encodeproject.org/files/ENCFF333CPM/@@download/ENCFF333CPM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001UTY bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1163615 Vishwanath Iyer, UTA 3e9e9a4015fdbb07ab56b493fb6a354a https://www.encodeproject.org/files/ENCFF001UTY/@@download/ENCFF001UTY.bed.gz hg19 released control low read depth, mild to moderate bottlenecking missing derived_from extremely low read depth, missing control alignments ENCFF329BNL bed narrowPeak peaks ENCSR000DND ChIP-seq UBERON:0001264 pancreas tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF781XST, ENCFF877UTE 1068829 ENCODE Processing Pipeline c2c71e56feccb082ef8ac1070f3896ce https://www.encodeproject.org/files/ENCFF329BNL/@@download/ENCFF329BNL.bed.gz hg19 released control low read depth, mild to moderate bottlenecking extremely low read depth, missing control alignments ENCFF001XRZ bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQS 784240 John Stamatoyannopoulos, UW c6e82dd42fd9c9dbdd3d75df1183fbf3 https://www.encodeproject.org/files/ENCFF001XRZ/@@download/ENCFF001XRZ.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF213JJM bed narrowPeak peaks ENCSR000DVA ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF138KCG, ENCFF501JGN 4259970 ENCODE Processing Pipeline b164abad0ce02171120a2a3e0b3e4963 https://www.encodeproject.org/files/ENCFF213JJM/@@download/ENCFF213JJM.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF291WLP bed narrowPeak peaks ENCSR000BKE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF906RQV 4513802 ENCODE Processing Pipeline 8617fa61d30c6d6d4cd9fdb8a1ebc790 https://www.encodeproject.org/files/ENCFF291WLP/@@download/ENCFF291WLP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF482QCD bed narrowPeak peaks ENCSR000BMT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NANOG-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF015LGN, ENCFF356DXM 3821978 ENCODE Processing Pipeline 8d71600478030b25b1fc13ff209c056d https://www.encodeproject.org/files/ENCFF482QCD/@@download/ENCFF482QCD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF338LQY bed narrowPeak peaks ENCSR000BNS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF325QSH, ENCFF356DXM 2942610 ENCODE Processing Pipeline d15ee169871f726922412f6da18c4d90 https://www.encodeproject.org/files/ENCFF338LQY/@@download/ENCFF338LQY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF836SKU bed narrowPeak peaks ENCSR372GIN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CBX5-human DNA False 2016-10-27 ENCODE 1 ENCFF513ZBH, ENCFF697EBC, ENCFF777FIV 5381323 ENCODE Processing Pipeline d585bead9e1e3f1a9aa5da5bbb2b3c93 https://www.encodeproject.org/files/ENCFF836SKU/@@download/ENCFF836SKU.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF961ADP bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human DNA False 2016-03-02 ENCODE 1 ENCFF181PST, ENCFF559EGU 7002170 ENCODE Processing Pipeline 6ece835dcbdf4828c1f339abadab621f https://www.encodeproject.org/files/ENCFF961ADP/@@download/ENCFF961ADP.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization ENCFF001UUB bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1237270 Vishwanath Iyer, UTA 40bca92b83bf3c44b8a04a79f5933a63 https://www.encodeproject.org/files/ENCFF001UUB/@@download/ENCFF001UUB.bed.gz hg19 archived mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from control insufficient read depth, insufficient read depth missing control alignments ENCFF310RCE bed narrowPeak peaks ENCSR000DNI ChIP-seq UBERON:0002106 spleen tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF211IRJ, ENCFF737EOY 3764862 ENCODE Processing Pipeline 14542614543bec9e38353480665df435 https://www.encodeproject.org/files/ENCFF310RCE/@@download/ENCFF310RCE.bed.gz hg19 released mild to moderate bottlenecking, low read depth, moderate library complexity control insufficient read depth, insufficient read depth missing control alignments ENCFF833VKG bed narrowPeak peaks ENCSR000DNQ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZZZ3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF159LJP, ENCFF420MOQ 3538496 ENCODE Processing Pipeline 403f4af056e826f159402b5e36b35478 https://www.encodeproject.org/files/ENCFF833VKG/@@download/ENCFF833VKG.bed.gz hg19 released low read depth biological replicates with identical biosample control insufficient read depth, insufficient read length ENCFF599NQC bed narrowPeak peaks ENCSR000BQK ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ATF2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF221PEC, ENCFF508HCX 6265334 ENCODE Processing Pipeline 53716309948af71654d84b0b6d0e153d https://www.encodeproject.org/files/ENCFF599NQC/@@download/ENCFF599NQC.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF691LNH bed narrowPeak peaks ENCSR000DPB ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF397CHN, ENCFF502MJK 4470367 ENCODE Processing Pipeline a072a308f03845167dc53186d0bc537a https://www.encodeproject.org/files/ENCFF691LNH/@@download/ENCFF691LNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF542DWV bed narrowPeak peaks ENCSR000EDP ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF298ULI 5401411 ENCODE Processing Pipeline 61b99754c0340358135249fe7d27b24b https://www.encodeproject.org/files/ENCFF542DWV/@@download/ENCFF542DWV.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001URZ bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1098028 Vishwanath Iyer, UTA d569f0c82f20b4f8dc5d0dd7534be445 https://www.encodeproject.org/files/ENCFF001URZ/@@download/ENCFF001URZ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, moderate library complexity missing derived_from, biological replicates with identical biosample ENCFF537TSK bed narrowPeak peaks ENCSR000DNA ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF020BND, ENCFF939MPS 5297898 ENCODE Processing Pipeline 6863296bfc38b4b4b59c9e04a0b38a0d https://www.encodeproject.org/files/ENCFF537TSK/@@download/ENCFF537TSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample ENCFF622NKF bed narrowPeak peaks ENCSR000ECA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF964HQE 4172041 ENCODE Processing Pipeline 42940b150816af7fe5619431c3f037bb https://www.encodeproject.org/files/ENCFF622NKF/@@download/ENCFF622NKF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF019JVF bed narrowPeak peaks ENCSR000ECD ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF971NYX 4469634 ENCODE Processing Pipeline a5cb3c39a172f56aba04526695360eb3 https://www.encodeproject.org/files/ENCFF019JVF/@@download/ENCFF019JVF.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTJ bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 722598 John Stamatoyannopoulos, UW 48a51fbc5d3c55523a17188b1c0125b3 https://www.encodeproject.org/files/ENCFF001XTJ/@@download/ENCFF001XTJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF002DDO bed narrowPeak optimal idr thresholded peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF001HVT 711922 ENCODE Consortium Analysis Working Group bc64fef4c49c1c68c531c03381fb685f https://www.encodeproject.org/files/ENCFF002DDO/@@download/ENCFF002DDO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF181KEB bed narrowPeak peaks ENCSR000DWY ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF225KSP, ENCFF621QAX 4849642 ENCODE Processing Pipeline 46f31a8b0d77d9c6158a8180e8cb041c https://www.encodeproject.org/files/ENCFF181KEB/@@download/ENCFF181KEB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF967ZPP bed narrowPeak peaks ENCSR000BHO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF456OEK 5134541 ENCODE Processing Pipeline bb2e02bddc20ea7fbc4c4947d3876f65 https://www.encodeproject.org/files/ENCFF967ZPP/@@download/ENCFF967ZPP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF974XPG bed narrowPeak peaks ENCSR000DZF ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF386FSS, ENCFF545DZO 4461832 ENCODE Processing Pipeline e97387490d6752ecb997268acf9feaf9 https://www.encodeproject.org/files/ENCFF974XPG/@@download/ENCFF974XPG.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF190UUO bed narrowPeak peaks ENCSR959OMS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-SAP130-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF706WAT 6526727 ENCODE Processing Pipeline 963237eb997213e3cad8566da10d8d4a https://www.encodeproject.org/files/ENCFF190UUO/@@download/ENCFF190UUO.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF999YFK bed narrowPeak peaks ENCSR000BGR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PBX3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF958RTR, ENCFF975ADV 4223573 ENCODE Processing Pipeline 31c6d64503c75d48ab0ec0985faa8ae3 https://www.encodeproject.org/files/ENCFF999YFK/@@download/ENCFF999YFK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient replicate concordance ENCFF001XMG bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXX 776832 John Stamatoyannopoulos, UW ef1458cf48d383d368ac8115bfaa0a8b https://www.encodeproject.org/files/ENCFF001XMG/@@download/ENCFF001XMG.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF025STW bed narrowPeak peaks ENCSR000DPV ChIP-seq NTR:0000481 AG10803 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF060TFC, ENCFF450ZYV 4354501 ENCODE Processing Pipeline da71cb4928d1a417b225bbeb64269fa9 https://www.encodeproject.org/files/ENCFF025STW/@@download/ENCFF025STW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms NTR biosample ENCFF725HKP bed narrowPeak peaks ENCSR000BIL ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF304KVB, ENCFF864ASU 6156486 ENCODE Processing Pipeline a6bc49f80eeec86bec0c7bdef7051b36 https://www.encodeproject.org/files/ENCFF725HKP/@@download/ENCFF725HKP.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF864QJF bed narrowPeak peaks ENCSR000EEH ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF180OPA 4206872 ENCODE Processing Pipeline 526e76f6fb517d1064424ac7cbfeb193 https://www.encodeproject.org/files/ENCFF864QJF/@@download/ENCFF864QJF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF330KXU bed narrowPeak peaks ENCSR340BXT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KAT7-human DNA False 2018-02-10 ENCODE 1 ENCFF299GON 6795712 ENCODE Processing Pipeline ec1c6e519216a3150f0e5591041e020b https://www.encodeproject.org/files/ENCFF330KXU/@@download/ENCFF330KXU.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF723VGS bed narrowPeak peaks ENCSR000EUJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IKZF1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF361LSB, ENCFF420MOQ 4593904 ENCODE Processing Pipeline 8e1ed270dfa1f118707f73a3211c49e7 https://www.encodeproject.org/files/ENCFF723VGS/@@download/ENCFF723VGS.bed.gz hg19 released low read length, low read depth control insufficient read depth ENCFF556HBG bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF232PMQ 3877075 ENCODE Processing Pipeline 7b1aef55c64986987534c8007ecdb9d7 https://www.encodeproject.org/files/ENCFF556HBG/@@download/ENCFF556HBG.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF821INE bed narrowPeak peaks ENCSR618ICR ChIP-seq EFO:0001086 A549 cell line Homo sapiens RCOR1-human DNA False 2014-07-07 ENCODE 1 ENCFF215VRH, ENCFF863STQ 4382596 ENCODE Processing Pipeline 56971f40c755782b168da0a901ae5951 https://www.encodeproject.org/files/ENCFF821INE/@@download/ENCFF821INE.bed.gz hg19 released file validation error, low read length, low read depth, antibody characterized with exemption mismatched file status ENCFF928MMD bed narrowPeak peaks ENCSR669LCD ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ATF4-human DNA False 2016-06-14 ENCODE 1 ENCFF708TFQ, ENCFF833MPT 6030812 ENCODE Processing Pipeline 76f9f0a75422f46e2b6b0e4d7bf2f7f8 https://www.encodeproject.org/files/ENCFF928MMD/@@download/ENCFF928MMD.bed.gz hg19 released low read depth, missing genetic modification characterization characterization(s) pending review ENCFF008BOV bed narrowPeak peaks ENCSR369YUK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-FOXP1-human DNA False 2018-02-10 ENCODE 1 ENCFF675GHT 4971126 ENCODE Processing Pipeline 2b665958288d9c20d8296589d3c51c47 https://www.encodeproject.org/files/ENCFF008BOV/@@download/ENCFF008BOV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO missing control alignments ENCFF995YHB bed narrowPeak peaks ENCSR087NSR ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-KDM1A-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF509PAA 6202782 ENCODE Processing Pipeline 46ae9bdd6b811685056a8d623cf701c2 https://www.encodeproject.org/files/ENCFF995YHB/@@download/ENCFF995YHB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF846NCI bed narrowPeak peaks ENCSR000BLY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour RAD21-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF628QPJ 5162873 ENCODE Processing Pipeline 472a4291cdc2556eac9bb183aedca1eb https://www.encodeproject.org/files/ENCFF846NCI/@@download/ENCFF846NCI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF246ZRW bed narrowPeak peaks ENCSR000DZP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMC3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF415OZI, ENCFF545DZO 4420736 ENCODE Processing Pipeline 7b5ac62f88b531789ba07c59c81d94fb https://www.encodeproject.org/files/ENCFF246ZRW/@@download/ENCFF246ZRW.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF352YTI bed narrowPeak peaks ENCSR000BIW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF133HNA, ENCFF356DXM 5466768 ENCODE Processing Pipeline 73685a6b59b4efffd6bf7ca56e436d7d https://www.encodeproject.org/files/ENCFF352YTI/@@download/ENCFF352YTI.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF689WPU bed narrowPeak peaks ENCSR000BRI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RUNX3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF187NWS, ENCFF508HCX 6167189 ENCODE Processing Pipeline 73e8fd857d18c96a2d5ac75e326a95fb https://www.encodeproject.org/files/ENCFF689WPU/@@download/ENCFF689WPU.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF743WCA bed narrowPeak peaks ENCSR068WNI ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF213CVR, ENCFF751PAR 5979879 ENCODE Processing Pipeline f270b52e7061bd994a5b7c4278f228a5 https://www.encodeproject.org/files/ENCFF743WCA/@@download/ENCFF743WCA.bed.gz hg19 released antibody characterized with exemption ENCFF437EBC bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human DNA False 2016-01-14 ENCODE 1 ENCFF090MZL, ENCFF472AKN 6044717 ENCODE Processing Pipeline 79c1ec872125b7c061e60ab15a3e95fc https://www.encodeproject.org/files/ENCFF437EBC/@@download/ENCFF437EBC.bed.gz hg19 released missing genetic modification characterization ENCFF002CDS bed narrowPeak optimal idr thresholded peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF000AVI, ENCFF000AVK 1381027 ENCODE Consortium Analysis Working Group 5042afb91f822356fa7b9d16c6d94e94 https://www.encodeproject.org/files/ENCFF002CDS/@@download/ENCFF002CDS.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF344RYC bed narrowPeak peaks ENCSR000AMF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF391MCN, ENCFF727XHW 4828262 ENCODE Processing Pipeline f462d7d540b5e27927b91e95e5f6803b https://www.encodeproject.org/files/ENCFF344RYC/@@download/ENCFF344RYC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF089QJI bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human DNA False 2016-03-02 ENCODE 1 ENCFF180DLN, ENCFF290VXO 5435601 ENCODE Processing Pipeline 1b3771a11fba80bd23684e282119d03b https://www.encodeproject.org/files/ENCFF089QJI/@@download/ENCFF089QJI.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF481EBP bed narrowPeak peaks ENCSR000BMF ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF755XST 4144183 ENCODE Processing Pipeline 6e0e715127161479dd410fa92e2928ea https://www.encodeproject.org/files/ENCFF481EBP/@@download/ENCFF481EBP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF008AIJ bed narrowPeak peaks ENCSR000BLZ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF770MRP 5207050 ENCODE Processing Pipeline 4cda13b5e2648b6a4693dea2848d69f6 https://www.encodeproject.org/files/ENCFF008AIJ/@@download/ENCFF008AIJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF558HCQ bed narrowPeak peaks ENCSR000BHT ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF654DIS 3913119 ENCODE Processing Pipeline 62240f1162f1f1d0eb4f3b039ece7872 https://www.encodeproject.org/files/ENCFF558HCQ/@@download/ENCFF558HCQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF206BMO bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF059XPJ, ENCFF710NTS 5056575 ENCODE Processing Pipeline b4656163d89caf96eaf4861a3a13b877 https://www.encodeproject.org/files/ENCFF206BMO/@@download/ENCFF206BMO.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF220GLK bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF698GEX, ENCFF710NTS 4742038 ENCODE Processing Pipeline eed575974928ae29e2b021dd1f635577 https://www.encodeproject.org/files/ENCFF220GLK/@@download/ENCFF220GLK.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF829NXG bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF573AFD, ENCFF998GMZ 2294461 ENCODE Processing Pipeline 3fe26a31a072923e0bb45a0d9b66931c https://www.encodeproject.org/files/ENCFF829NXG/@@download/ENCFF829NXG.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF317YJY bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA False 2016-09-01 ENCODE 1 ENCFF194ZKK, ENCFF946QHS 6910926 ENCODE Processing Pipeline bc842742eea8b78ce621aa042251e9e5 https://www.encodeproject.org/files/ENCFF317YJY/@@download/ENCFF317YJY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization ENCFF159IRT bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF904GCT 4828402 ENCODE Processing Pipeline 1aadafa6f0c66521cb34dd178f33868b https://www.encodeproject.org/files/ENCFF159IRT/@@download/ENCFF159IRT.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF792VDM bed narrowPeak peaks ENCSR572DUJ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2017-08-28 ENCODE 1 ENCFF723SME, ENCFF959YHF 5873759 ENCODE Processing Pipeline 66c3988d5eb739b8b18b92b3b1f66dfd https://www.encodeproject.org/files/ENCFF792VDM/@@download/ENCFF792VDM.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO missing nih_institutional_certification ENCFF636JXY bed narrowPeak peaks ENCSR331HPA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens GABPA-human DNA False 2014-06-30 ENCODE 1 ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV 4461664 ENCODE Processing Pipeline 0c3f577bd1e330c847c578dcd8a09790 https://www.encodeproject.org/files/ENCFF636JXY/@@download/ENCFF636JXY.bed.gz hg19 released mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption biological replicates with identical biosample ENCFF435TXP bed narrowPeak peaks ENCSR000EUO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTBP2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF436RQJ, ENCFF509ANO 5689682 ENCODE Processing Pipeline 5fd7cf69480e74f1c0dcfffea07d307b https://www.encodeproject.org/files/ENCFF435TXP/@@download/ENCFF435TXP.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF256FUR bed narrowPeak peaks ENCSR000BMI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SRF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF941CFE, ENCFF963CVB 4078871 ENCODE Processing Pipeline 81e563b52b45fdedd7c92dcf39ed7fc2 https://www.encodeproject.org/files/ENCFF256FUR/@@download/ENCFF256FUR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF800ABS bed narrowPeak peaks ENCSR988LZG ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ARID4B-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF473DTA 6777657 ENCODE Processing Pipeline 24d3f3596cf651de03570cc005212e70 https://www.encodeproject.org/files/ENCFF800ABS/@@download/ENCFF800ABS.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF283VJO bed narrowPeak peaks ENCSR000BJA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF998VOK 4029175 ENCODE Processing Pipeline 5fc856fc251562390858d357d9cc087c https://www.encodeproject.org/files/ENCFF283VJO/@@download/ENCFF283VJO.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF168LBA bed narrowPeak peaks ENCSR945NFL ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens USF2-human DNA False 2017-06-15 ENCODE 1 ENCFF459ELU, ENCFF650GFB 155206 ENCODE Processing Pipeline a1853dc6335971ecb9914bc9c75b3622 https://www.encodeproject.org/files/ENCFF168LBA/@@download/ENCFF168LBA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF334LTK bed narrowPeak peaks ENCSR031KWR ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF869LQO, ENCFF889DFX 6345525 ENCODE Processing Pipeline a0f4f839fbd4b9be1a8d589ba4037700 https://www.encodeproject.org/files/ENCFF334LTK/@@download/ENCFF334LTK.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF257FNC bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF650MOB, ENCFF943CTI 3403440 ENCODE Processing Pipeline c7c78f86b4257bf45fb74f8d62b94c06 https://www.encodeproject.org/files/ENCFF257FNC/@@download/ENCFF257FNC.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF001USF bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1318235 Vishwanath Iyer, UTA a3a7daa60e6440de140376f4e7603835 https://www.encodeproject.org/files/ENCFF001USF/@@download/ENCFF001USF.bed.gz hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF327KKL bed narrowPeak peaks ENCSR000DKR ChIP-seq EFO:0005335 GM10266 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF297IQJ, ENCFF719PSV 3660347 ENCODE Processing Pipeline 37d1306101f90abfb34886cf38a6fe60 https://www.encodeproject.org/files/ENCFF327KKL/@@download/ENCFF327KKL.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF028EAN bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 4900137 ENCODE Processing Pipeline b26dddd8db39fbaa02cca337b263fc5e https://www.encodeproject.org/files/ENCFF028EAN/@@download/ENCFF028EAN.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF795KPL bed narrowPeak peaks ENCSR000BPB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens SIN3A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF025UDZ, ENCFF470EPV 4079696 ENCODE Processing Pipeline a90773fd5fe8725ab93d8f966116e4a4 https://www.encodeproject.org/files/ENCFF795KPL/@@download/ENCFF795KPL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF485KEP bed narrowPeak peaks ENCSR000DOS ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour MYC-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF339PKZ, ENCFF425RUE 5268373 ENCODE Processing Pipeline 6a09194a187e1463c470842e3a88a254 https://www.encodeproject.org/files/ENCFF485KEP/@@download/ENCFF485KEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF483ENA bed narrowPeak peaks ENCSR720USO ChIP-seq UBERON:0002367 prostate gland tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF225TLR, ENCFF942GWO 6460385 ENCODE Processing Pipeline 49e4b91ad490e293a8051bd802f597fc https://www.encodeproject.org/files/ENCFF483ENA/@@download/ENCFF483ENA.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF603LKQ bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human DNA False 2016-06-13 ENCODE 1 ENCFF266VDG, ENCFF473TXL 7251822 ENCODE Processing Pipeline a4ffb0ad4ba13a89b18dbdf27735fbf2 https://www.encodeproject.org/files/ENCFF603LKQ/@@download/ENCFF603LKQ.bed.gz hg19 released missing genetic modification characterization ENCFF686GYI bed narrowPeak peaks ENCSR000ECB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF599MVB, ENCFF937OBB 5363076 ENCODE Processing Pipeline 61a0cea731b6e63dd21f5e200465a16f https://www.encodeproject.org/files/ENCFF686GYI/@@download/ENCFF686GYI.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF378JGJ bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF992ORW 5188832 ENCODE Processing Pipeline 98ce87791b953d6bb2d7f3af8c7c40b1 https://www.encodeproject.org/files/ENCFF378JGJ/@@download/ENCFF378JGJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF001XTZ bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXX 1091092 John Stamatoyannopoulos, UW 8b4e4973819a7b9f556172882199b3d9 https://www.encodeproject.org/files/ENCFF001XTZ/@@download/ENCFF001XTZ.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF641GOK bed narrowPeak peaks ENCSR000DXW ChIP-seq EFO:0005715 WERI-Rb-1 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF171VRI, ENCFF627YEZ 3380690 ENCODE Processing Pipeline 18c82b43513367dfcefb9a9627bf4994 https://www.encodeproject.org/files/ENCFF641GOK/@@download/ENCFF641GOK.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF447CBR bed narrowPeak peaks ENCSR000BIT ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF944UGX 4256875 ENCODE Processing Pipeline 43a6bd90f2e0ce6d0488f8de3e1fda68 https://www.encodeproject.org/files/ENCFF447CBR/@@download/ENCFF447CBR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF981LHO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human DNA False 2016-03-02 ENCODE 1 ENCFF124STW, ENCFF860REV 5953388 ENCODE Processing Pipeline 20b265d3d51a939bbb83700dca54c959 https://www.encodeproject.org/files/ENCFF981LHO/@@download/ENCFF981LHO.bed.gz hg19 released mild to moderate bottlenecking, low read depth, missing genetic modification characterization ENCFF536OEM bed narrowPeak peaks ENCSR027HML ChIP-seq EFO:0006711 OCI-LY7 cell line Homo sapiens CTCF-human DNA see document see document False 2014-07-11 ENCODE 1 ENCFF004XDI, ENCFF602DKP, ENCFF654OKM 6456581 ENCODE Processing Pipeline 67ca50ace187082751a8ac217c988297 https://www.encodeproject.org/files/ENCFF536OEM/@@download/ENCFF536OEM.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption NTR biosample ENCFF354QYP bed narrowPeak peaks ENCSR000EBX ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens BRCA1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF599MVB, ENCFF932MOL 4293581 ENCODE Processing Pipeline a70946a63d3206418cf9a01c98969c2b https://www.encodeproject.org/files/ENCFF354QYP/@@download/ENCFF354QYP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF572VXK bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human DNA False 2016-06-14 ENCODE 1 ENCFF394VWK, ENCFF581ZJL 7033899 ENCODE Processing Pipeline c0d6060bab366f6158b69de0f02afd5e https://www.encodeproject.org/files/ENCFF572VXK/@@download/ENCFF572VXK.bed.gz hg19 released ENCFF001UTV bed narrowPeak peaks ENCSR000DMK ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1656006 Vishwanath Iyer, UTA 6c970fe6171530858254a42b1d2ffae6 https://www.encodeproject.org/files/ENCFF001UTV/@@download/ENCFF001UTV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001XMT bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZL 839053 John Stamatoyannopoulos, UW 8f1e2b7c669be0b177311aa1ac6fe8d3 https://www.encodeproject.org/files/ENCFF001XMT/@@download/ENCFF001XMT.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF493VQC bed narrowPeak peaks ENCSR000DQI ChIP-seq EFO:0002779 BJ cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF217JMI, ENCFF706WFS 3972671 ENCODE Processing Pipeline 334898a666f4ce14ce56d36b98258185 https://www.encodeproject.org/files/ENCFF493VQC/@@download/ENCFF493VQC.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth ENCFF591DYQ bed narrowPeak peaks ENCSR000BJZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF276KQJ, ENCFF837IOW 5992434 ENCODE Processing Pipeline 29b8364052c75dd971eea56750045f7b https://www.encodeproject.org/files/ENCFF591DYQ/@@download/ENCFF591DYQ.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF343NOG bed narrowPeak peaks ENCSR261VAS ChIP-seq CL:0000192 smooth muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-12-03 ENCODE 1 ENCFF346LNS, ENCFF696UZI, ENCFF989OXT 3990576 ENCODE Processing Pipeline 9b0c6551da559fef334e85b3300d89b5 https://www.encodeproject.org/files/ENCFF343NOG/@@download/ENCFF343NOG.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption NTR biosample, experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking ENCFF107CCL bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF751ATX 4278578 ENCODE Processing Pipeline b256805c9fc102b8db586279a1c74419 https://www.encodeproject.org/files/ENCFF107CCL/@@download/ENCFF107CCL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF039BYF bed narrowPeak peaks ENCSR418RRF ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM1A-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF285FIN, ENCFF727XHW 6513069 ENCODE Processing Pipeline 2e78380b77ef70ab29aae53dea3179b3 https://www.encodeproject.org/files/ENCFF039BYF/@@download/ENCFF039BYF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance ENCFF653VPD bed narrowPeak peaks ENCSR000EBU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF439HHQ, ENCFF599MVB 5074864 ENCODE Processing Pipeline f387a8933b01d917ee0777dea79baea4 https://www.encodeproject.org/files/ENCFF653VPD/@@download/ENCFF653VPD.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF597MUA bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF875HFU 6760876 ENCODE Processing Pipeline 1ae57fda98146bd40cef8c7399d85572 https://www.encodeproject.org/files/ENCFF597MUA/@@download/ENCFF597MUA.bed.gz hg19 released ENCFF168YSB bed narrowPeak peaks ENCSR000DYF ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2AphosphoS2-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF011EEZ, ENCFF296BML, ENCFF512WDI 6231196 ENCODE Processing Pipeline fe5f4b7e075b32abf06990fd56214364 https://www.encodeproject.org/files/ENCFF168YSB/@@download/ENCFF168YSB.bed.gz hg19 released low read length, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XMK bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GYI 696772 John Stamatoyannopoulos, UW 775189b2ba228c134a86ad7c225b47ae https://www.encodeproject.org/files/ENCFF001XMK/@@download/ENCFF001XMK.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF005RNW bed narrowPeak peaks ENCSR000DPY ChIP-seq CL:0002547 fibroblast of the aortic adventitia primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF772BCU, ENCFF972ATQ 2238862 ENCODE Processing Pipeline 5b3497b5bd24d11f6712be57a28178c5 https://www.encodeproject.org/files/ENCFF005RNW/@@download/ENCFF005RNW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth ENCFF616DKI bed narrowPeak peaks ENCSR000BKC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266SYC, ENCFF356DXM 3722292 ENCODE Processing Pipeline b23cad7158e5e40098e9c7d27a184636 https://www.encodeproject.org/files/ENCFF616DKI/@@download/ENCFF616DKI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF311JHD bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF371LNT, ENCFF732TLR 5548569 ENCODE Processing Pipeline d5c14559ee0dae972ab69cce08e29c20 https://www.encodeproject.org/files/ENCFF311JHD/@@download/ENCFF311JHD.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF958APN bed narrowPeak peaks ENCSR000EFF ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens MAZ-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF865LAP 4594619 ENCODE Processing Pipeline fb453334f324d7b5fbd73fa3e3285a75 https://www.encodeproject.org/files/ENCFF958APN/@@download/ENCFF958APN.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF318RHH bed narrowPeak peaks ENCSR000DZV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF416FSY, ENCFF545DZO 4125263 ENCODE Processing Pipeline 5e9262a0cb34be36eda68e27d952dc6e https://www.encodeproject.org/files/ENCFF318RHH/@@download/ENCFF318RHH.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF198UGH bed narrowPeak peaks ENCSR000BPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF346RZT, ENCFF362YKT 6197544 ENCODE Processing Pipeline 59087602ebdd393540fcfe52ba68d390 https://www.encodeproject.org/files/ENCFF198UGH/@@download/ENCFF198UGH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF084VMV bed narrowPeak peaks ENCSR000ALA ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF039WIG, ENCFF735DEG 3946334 ENCODE Processing Pipeline e9baaf031d262ea751d5c643caaea098 https://www.encodeproject.org/files/ENCFF084VMV/@@download/ENCFF084VMV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity insufficient read depth ENCFF001XPH bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HGZ 787042 John Stamatoyannopoulos, UW f11b3a03feb68926d56833f0ccdc185b https://www.encodeproject.org/files/ENCFF001XPH/@@download/ENCFF001XPH.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF737TLI bed narrowPeak peaks ENCSR000DRU ChIP-seq EFO:0001162 GM12875 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF182XEA, ENCFF913KQZ 3247552 ENCODE Processing Pipeline e700f729e1a480aacaccfa7ace1dd918 https://www.encodeproject.org/files/ENCFF737TLI/@@download/ENCFF737TLI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF714NDI bed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180HYH, ENCFF574XYY 5600436 ENCODE Processing Pipeline e404f9cee25f574cd50e7e6435f4eeea https://www.encodeproject.org/files/ENCFF714NDI/@@download/ENCFF714NDI.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF974PTU bed narrowPeak peaks ENCSR000BQS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF549FFR, ENCFF812HUT, ENCFF958RTR 4725395 ENCODE Processing Pipeline 1e04b973d8c86d59b1cbb44967b2f31a https://www.encodeproject.org/files/ENCFF974PTU/@@download/ENCFF974PTU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth ENCFF790RYU bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR 5598548 ENCODE Processing Pipeline b32947328791f45a48f53c1fdbec9f7e https://www.encodeproject.org/files/ENCFF790RYU/@@download/ENCFF790RYU.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF039PUW bed narrowPeak peaks ENCSR027FSZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF080TZU, ENCFF622IZB 6776523 ENCODE Processing Pipeline 7f3d79db32c87814cfd1f8f89aece011 https://www.encodeproject.org/files/ENCFF039PUW/@@download/ENCFF039PUW.bed.gz hg19 released antibody characterized with exemption ENCFF001XST bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 862203 John Stamatoyannopoulos, UW e8332ac71efe7497fe88b557ce628c9c https://www.encodeproject.org/files/ENCFF001XST/@@download/ENCFF001XST.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF304FFB bed narrowPeak peaks ENCSR000DZB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ELK1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF164TSL, ENCFF545DZO 4310528 ENCODE Processing Pipeline 702bb44e799b0f61b777af58d1f4cf64 https://www.encodeproject.org/files/ENCFF304FFB/@@download/ENCFF304FFB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF767MET bed narrowPeak peaks ENCSR000BNI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF771TCH 4392167 ENCODE Processing Pipeline 395f72d1643b1534682328210707a4da https://www.encodeproject.org/files/ENCFF767MET/@@download/ENCFF767MET.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF288VSN bed narrowPeak peaks ENCSR067HGI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CHD2-human DNA False 2014-07-07 ENCODE 1 ENCFF863STQ, ENCFF879ZRP 4768963 ENCODE Processing Pipeline 76b9f02694dd2d51f2e31b71251c7476 https://www.encodeproject.org/files/ENCFF288VSN/@@download/ENCFF288VSN.bed.gz hg19 released low read length experiment not submitted to GEO partially characterized antibody ENCFF713KSL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF278YTL, ENCFF750MIM 2290084 ENCODE Processing Pipeline af1c4a7aa3b4d0dfc348d3685a0b7c8b https://www.encodeproject.org/files/ENCFF713KSL/@@download/ENCFF713KSL.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF474KGT bed narrowPeak peaks ENCSR000AOA ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF385UZW, ENCFF451SVK, ENCFF474UIC 5658490 ENCODE Processing Pipeline ce82950f0f188ee5cb89e908c11c76ea https://www.encodeproject.org/files/ENCFF474KGT/@@download/ENCFF474KGT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF270RLY bed narrowPeak peaks ENCSR000DZD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF258NYC, ENCFF545DZO 4424277 ENCODE Processing Pipeline bc7a9f5c798d838ca235739f1184e385 https://www.encodeproject.org/files/ENCFF270RLY/@@download/ENCFF270RLY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF191NQS bed narrowPeak peaks ENCSR000DYY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens E2F4-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF597JXK 3873486 ENCODE Processing Pipeline 0554fc80e5ff413de68ad8b01bde8c66 https://www.encodeproject.org/files/ENCFF191NQS/@@download/ENCFF191NQS.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF864PVD bed narrowPeak peaks ENCSR000BNP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF180NKF, ENCFF958RTR, ENCFF963CVB 5535261 ENCODE Processing Pipeline 90807ae650d4013601096acbb16706a4 https://www.encodeproject.org/files/ENCFF864PVD/@@download/ENCFF864PVD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XRK bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 514150 John Stamatoyannopoulos, UW f951ec040d109e841c247acfdf835241 https://www.encodeproject.org/files/ENCFF001XRK/@@download/ENCFF001XRK.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF002DDA bed narrowPeak optimal idr thresholded peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HOV 375499 ENCODE Consortium Analysis Working Group 2bc274678f574d811003c25e47864252 https://www.encodeproject.org/files/ENCFF002DDA/@@download/ENCFF002DDA.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF600CVY bed narrowPeak peaks ENCSR000DUP ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF340ENP, ENCFF945XQT 2203007 ENCODE Processing Pipeline 71b6784ff98db8e9717b8eaf7cd71d5e https://www.encodeproject.org/files/ENCFF600CVY/@@download/ENCFF600CVY.bed.gz hg19 released control low read depth, low read length, inconsistent platforms insufficient read depth ENCFF001XQX bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMW 574911 John Stamatoyannopoulos, UW 9bd5ffe43d837018ccaafa5789bb86ec https://www.encodeproject.org/files/ENCFF001XQX/@@download/ENCFF001XQX.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF263ZIY bed narrowPeak peaks ENCSR000DUB ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF111FGZ, ENCFF122HJS 1727029 ENCODE Processing Pipeline 9907af9e5ad7594d5220fd9863fde372 https://www.encodeproject.org/files/ENCFF263ZIY/@@download/ENCFF263ZIY.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth extremely low read depth, missing control alignments ENCFF875YOA bed narrowPeak peaks ENCSR000BMZ ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF081HCC, ENCFF346RZT 4956830 ENCODE Processing Pipeline ac0997f671ddfa3fc9478e5f5a0ff674 https://www.encodeproject.org/files/ENCFF875YOA/@@download/ENCFF875YOA.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF357NBU bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF309ANN 4223795 ENCODE Processing Pipeline 69a2a9af103dd227176648e42edaee29 https://www.encodeproject.org/files/ENCFF357NBU/@@download/ENCFF357NBU.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth ENCFF001XNI bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBJ 778320 John Stamatoyannopoulos, UW 62948b776e85af1c9b09394e351a0684 https://www.encodeproject.org/files/ENCFF001XNI/@@download/ENCFF001XNI.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF858HDY bed narrowPeak peaks ENCSR000DRB ChIP-seq EFO:0005337 GM12864 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF418PTV, ENCFF437XQZ 2866804 ENCODE Processing Pipeline 1805a6e56d8ac8d00e55976f1a24100c https://www.encodeproject.org/files/ENCFF858HDY/@@download/ENCFF858HDY.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient read depth missing control alignments ENCFF001USL bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1110961 Vishwanath Iyer, UTA f278cb91792ef81d2044e690f4f945fb https://www.encodeproject.org/files/ENCFF001USL/@@download/ENCFF001USL.bed.gz hg19 archived mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read depth control extremely low read depth, missing control alignments ENCFF555GZI bed narrowPeak peaks ENCSR000DKZ ChIP-seq EFO:0005345 GM13976 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF248LUV, ENCFF841TPD 3319531 ENCODE Processing Pipeline f88c303dbbe59fba376fdc23b7668774 https://www.encodeproject.org/files/ENCFF555GZI/@@download/ENCFF555GZI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF981IPY bed narrowPeak peaks ENCSR000DZG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331KEV, ENCFF420MOQ 4488501 ENCODE Processing Pipeline 068912a3f4e79bb4e1af6fe5b56c1127 https://www.encodeproject.org/files/ENCFF981IPY/@@download/ENCFF981IPY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF565QFG bed narrowPeak peaks ENCSR000BRA ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour CREB1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF692IRB, ENCFF891DUU 3586932 ENCODE Processing Pipeline 41358c3f0008d638324617e527486188 https://www.encodeproject.org/files/ENCFF565QFG/@@download/ENCFF565QFG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF397GWD bed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF614QMP 4495477 ENCODE Processing Pipeline e8e09d5d180d98eb388d73ab00363db8 https://www.encodeproject.org/files/ENCFF397GWD/@@download/ENCFF397GWD.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF433KJT bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF456BYT, ENCFF768SVS 6278109 ENCODE Processing Pipeline 8949bddbdc88054247ad6b4ee81e1e64 https://www.encodeproject.org/files/ENCFF433KJT/@@download/ENCFF433KJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF578MYY bed narrowPeak peaks ENCSR000EEE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens CEBPB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF867DTO 4975123 ENCODE Processing Pipeline dd00434db40aa109c103280531fc37c1 https://www.encodeproject.org/files/ENCFF578MYY/@@download/ENCFF578MYY.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF508ZEB bed narrowPeak peaks ENCSR000EDV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens EP300-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF608WKP 5092416 ENCODE Processing Pipeline 5cf274f882dd9c0850301639ad1440b3 https://www.encodeproject.org/files/ENCFF508ZEB/@@download/ENCFF508ZEB.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF743KRF bed narrowPeak peaks ENCSR784FYS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RBFOX2-human DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF198IJO, ENCFF462KWM 5805233 ENCODE Processing Pipeline 169e12efb0c5bd4bd743beac4c454c2c https://www.encodeproject.org/files/ENCFF743KRF/@@download/ENCFF743KRF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF355REI bed narrowPeak peaks ENCSR000BQD ChIP-seq EFO:0001247 T47D cell line Homo sapiens bisphenol A 100.0 nM 30.0 minute ESR1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF002HVX, ENCFF334WOO, ENCFF698QEQ 4007596 ENCODE Processing Pipeline 64f27625caa57837f4b95f7cc920d940 https://www.encodeproject.org/files/ENCFF355REI/@@download/ENCFF355REI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF667IBC bed narrowPeak peaks ENCSR233FAG ChIP-seq EFO:0001184 HEK293T cell line Homo sapiens PKNOX1-human DNA False 2016-11-17 ENCODE 1 ENCFF040GAR, ENCFF255FOB, ENCFF760DHW 6941686 ENCODE Processing Pipeline 6604b384938ac22340c895fcb8df7079 https://www.encodeproject.org/files/ENCFF667IBC/@@download/ENCFF667IBC.bed.gz hg19 released ENCFF711VHK bed narrowPeak peaks ENCSR000DZI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MXI1-human DNA False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF387QOE, ENCFF545DZO 4587819 ENCODE Processing Pipeline c85d0aa485fd67cd66b762d7c70136fa https://www.encodeproject.org/files/ENCFF711VHK/@@download/ENCFF711VHK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment ENCFF019FNI bed narrowPeak peaks ENCSR000BRN ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFIC-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF930KIJ 6488664 ENCODE Processing Pipeline f4ce1c0a9218c31ee5091bc8bf3803fc https://www.encodeproject.org/files/ENCFF019FNI/@@download/ENCFF019FNI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample ENCFF599VMK bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF969WVY, ENCFF998GMZ 1345941 ENCODE Processing Pipeline ad7df233444d5a1f7d90a06cba4f1494 https://www.encodeproject.org/files/ENCFF599VMK/@@download/ENCFF599VMK.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF386BWC bed narrowPeak peaks ENCSR555ZMV ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens AGO1-human DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF462KWM, ENCFF755OKE 6118986 ENCODE Processing Pipeline 7e51434831419f8d0770e176efb8c526 https://www.encodeproject.org/files/ENCFF386BWC/@@download/ENCFF386BWC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF001XRV bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQA 937295 John Stamatoyannopoulos, UW 338697a148ccc83d0ae17ec08a2c3451 https://www.encodeproject.org/files/ENCFF001XRV/@@download/ENCFF001XRV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF610GLP bed narrowPeak peaks ENCSR000DUX ChIP-seq CL:0002557 fibroblast of pulmonary artery primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF327YGC, ENCFF470KVA 4675468 ENCODE Processing Pipeline da53e8f4957c778f8467e4f97692440a https://www.encodeproject.org/files/ENCFF610GLP/@@download/ENCFF610GLP.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms missing control alignments ENCFF806MDV bed narrowPeak peaks ENCSR000BJO ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF134TNE, ENCFF248GJG, ENCFF990BKO 5086558 ENCODE Processing Pipeline ab4d30bdecb62c12c23fa55a734700c8 https://www.encodeproject.org/files/ENCFF806MDV/@@download/ENCFF806MDV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF380BKK bed narrowPeak peaks ENCSR000BMC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266XYT, ENCFF346RZT 5697661 ENCODE Processing Pipeline 9a884461cd8092870ab313c7e55ddc32 https://www.encodeproject.org/files/ENCFF380BKK/@@download/ENCFF380BKK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF536YVV bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF868YCY 4405762 ENCODE Processing Pipeline 2353777e3b8f76d67d0bf9af71a94f3d https://www.encodeproject.org/files/ENCFF536YVV/@@download/ENCFF536YVV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XNO bed narrowPeak peaks ENCSR000DRE ChIP-seq EFO:0005338 GM12865 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HCE 699141 John Stamatoyannopoulos, UW a0575ca4bd7aac05956a8d075a85f88f https://www.encodeproject.org/files/ENCFF001XNO/@@download/ENCFF001XNO.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms missing raw data in replicate insufficient read depth missing control alignments ENCFF001USE bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1381266 Vishwanath Iyer, UTA 285966ae09ce968994fae18e23a07669 https://www.encodeproject.org/files/ENCFF001USE/@@download/ENCFF001USE.bed.gz hg19 released mild to moderate bottlenecking, low read depth missing derived_from, biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF251JON bed narrowPeak peaks ENCSR000DKP ChIP-seq EFO:0005334 GM10248 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF384QVL, ENCFF531PKS 3572878 ENCODE Processing Pipeline 6936922484264644e8d91f08d0c8ad1d https://www.encodeproject.org/files/ENCFF251JON/@@download/ENCFF251JON.bed.gz hg19 released mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth control extremely low read depth, missing control alignments ENCFF647MSK bed narrowPeak peaks ENCSR000DPC ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens afimoxifene 1.0 μM 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF253RFD, ENCFF502MJK 5555261 ENCODE Processing Pipeline 38536ae0902ff6df3229c05d8e5ac1b9 https://www.encodeproject.org/files/ENCFF647MSK/@@download/ENCFF647MSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample severe bottlenecking ENCFF281ONW bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF461UBM 1358195 ENCODE Processing Pipeline 99965bf4d8aaec0d25e61565757d4476 https://www.encodeproject.org/files/ENCFF281ONW/@@download/ENCFF281ONW.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF224GZD bed narrowPeak peaks ENCSR000EZD ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF406ZWO, ENCFF814FCQ 1535754 ENCODE Processing Pipeline a7c295748685ddbdf57c4aca4091794c https://www.encodeproject.org/files/ENCFF224GZD/@@download/ENCFF224GZD.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth, insufficient read length extremely low read depth ENCFF731JIX bed narrowPeak peaks ENCSR000BPT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ELF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF860JJU, ENCFF864UEQ 5607155 ENCODE Processing Pipeline a6371774fda1b790b6b7e613e84b6a18 https://www.encodeproject.org/files/ENCFF731JIX/@@download/ENCFF731JIX.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF675BQE bed narrowPeak peaks ENCSR000DPA ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF008ZST, ENCFF502MJK 6172182 ENCODE Processing Pipeline d9a2eeb7e06bcbcac46dfd02883ed24a https://www.encodeproject.org/files/ENCFF675BQE/@@download/ENCFF675BQE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization biological replicates with identical biosample ENCFF976NKK bed narrowPeak peaks ENCSR000BNO ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF266NHV, ENCFF960JYT 4626514 ENCODE Processing Pipeline fab28693e6e55f38de5c28abf82d891e https://www.encodeproject.org/files/ENCFF976NKK/@@download/ENCFF976NKK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF830ZWP bed narrowPeak peaks ENCSR000EIB ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP 5161145 ENCODE Processing Pipeline db81a0b6127cddbbd67d7fc367ccb2cf https://www.encodeproject.org/files/ENCFF830ZWP/@@download/ENCFF830ZWP.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF595QHF bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 4688230 ENCODE Processing Pipeline be40a763bd65492b830c3cf768a541ad https://www.encodeproject.org/files/ENCFF595QHF/@@download/ENCFF595QHF.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent target of control experiment biological replicates with identical biosample ENCFF092FFG bed narrowPeak peaks ENCSR000EEB ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF126OVJ 5716680 ENCODE Processing Pipeline 8d889c076bae1bef1cc6daa795e883d4 https://www.encodeproject.org/files/ENCFF092FFG/@@download/ENCFF092FFG.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF246GJS bed narrowPeak peaks ENCSR525YFS ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB40-human DNA False 2016-08-01 ENCODE 1 ENCFF449NNE, ENCFF560SBN 6036616 ENCODE Processing Pipeline 32f13d6823312b0678e67970d377f590 https://www.encodeproject.org/files/ENCFF246GJS/@@download/ENCFF246GJS.bed.gz hg19 released antibody characterized with exemption ENCFF001XQA bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 822894 John Stamatoyannopoulos, UW f9c7d07990d97bbd9a0061243dcbd239 https://www.encodeproject.org/files/ENCFF001XQA/@@download/ENCFF001XQA.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF002DCQ bed narrowPeak optimal idr thresholded peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HKB 807242 ENCODE Consortium Analysis Working Group fde7e0859c20ba18cda848aa9ceffad1 https://www.encodeproject.org/files/ENCFF002DCQ/@@download/ENCFF002DCQ.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF861NLK bed narrowPeak peaks ENCSR000DTF ChIP-seq CL:0002548 cardiac fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF419FEJ, ENCFF661ZEZ 4247467 ENCODE Processing Pipeline f2002e90a4db1e594fac6262f148c6e4 https://www.encodeproject.org/files/ENCFF861NLK/@@download/ENCFF861NLK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF051FKL bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF362BFL 3582959 ENCODE Processing Pipeline d37e6204205236600c1cd7fc27b279c0 https://www.encodeproject.org/files/ENCFF051FKL/@@download/ENCFF051FKL.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF004MPD bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human DNA False 2016-04-01 ENCODE 1 ENCFF092ACZ, ENCFF487NQY 5580912 ENCODE Processing Pipeline 4fae6b6b7a4a86df07b748b45c5ba3e8 https://www.encodeproject.org/files/ENCFF004MPD/@@download/ENCFF004MPD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF222CSK bed narrowPeak peaks ENCSR000EVW ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF269ZZO, ENCFF379GUA 5545148 ENCODE Processing Pipeline 9e77f17dc7009f11ffe7875a5e005196 https://www.encodeproject.org/files/ENCFF222CSK/@@download/ENCFF222CSK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF200WFO bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF552DDV, ENCFF574XYY 6262092 ENCODE Processing Pipeline 584d30694373b6331099acf9088ef033 https://www.encodeproject.org/files/ENCFF200WFO/@@download/ENCFF200WFO.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF998WPB bed narrowPeak peaks ENCSR000BPU ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour ETS1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF455WGF, ENCFF864UEQ 6000076 ENCODE Processing Pipeline b8d07bfaec10e7802d33075a25fbd008 https://www.encodeproject.org/files/ENCFF998WPB/@@download/ENCFF998WPB.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF408FLA bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human DNA False 2016-01-14 ENCODE 1 ENCFF014ABI, ENCFF242UOG 7154927 ENCODE Processing Pipeline 34514dcce76771f625e9a0f6c1b8e49e https://www.encodeproject.org/files/ENCFF408FLA/@@download/ENCFF408FLA.bed.gz hg19 released missing genetic modification characterization ENCFF142SVH bed narrowPeak peaks ENCSR000AUE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF289PMY, ENCFF631JUR, ENCFF698OND 5855036 ENCODE Processing Pipeline 8541b4c839db43ae7c053eefceb4139e https://www.encodeproject.org/files/ENCFF142SVH/@@download/ENCFF142SVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF194IYQ bed narrowPeak peaks ENCSR000BHJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032WUR, ENCFF228QWW, ENCFF958RTR 3798265 ENCODE Processing Pipeline fc8a1fe849827f33e155bfdfc02a37f0 https://www.encodeproject.org/files/ENCFF194IYQ/@@download/ENCFF194IYQ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth ENCFF701HCP bed narrowPeak peaks ENCSR000BJW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF615AON 3777708 ENCODE Processing Pipeline a5bbc5dcb6e31d9607641f443d4d7084 https://www.encodeproject.org/files/ENCFF701HCP/@@download/ENCFF701HCP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF710XFQ bed narrowPeak peaks ENCSR000DYI ChIP-seq EFO:0001086 A549 cell line Homo sapiens CEBPB-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF296BML, ENCFF512WDI, ENCFF940YYO 5309170 ENCODE Processing Pipeline 54d39b84761cf7691a278da6724e3ac0 https://www.encodeproject.org/files/ENCFF710XFQ/@@download/ENCFF710XFQ.bed.gz hg19 released low read length, low read depth, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF860WKG bed narrowPeak peaks ENCSR000EHY ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens RFX5-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP 4816074 ENCODE Processing Pipeline 7cc8a27661ac10afd22f18914a6e9f71 https://www.encodeproject.org/files/ENCFF860WKG/@@download/ENCFF860WKG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF088SYH bed narrowPeak peaks ENCSR972LYL ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF158YVQ, ENCFF664ITJ 6629904 ENCODE Processing Pipeline 6561cc38e9ca79c1de0d331b5f8fce18 https://www.encodeproject.org/files/ENCFF088SYH/@@download/ENCFF088SYH.bed.gz hg19 released antibody characterized with exemption ENCFF342EJU bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF396QHD 1846008 ENCODE Processing Pipeline 2204adb7de4c87af2ca746cd3217546a https://www.encodeproject.org/files/ENCFF342EJU/@@download/ENCFF342EJU.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF137BQM bed narrowPeak peaks ENCSR521IID ChIP-seq UBERON:0002107 liver tissue Homo sapiens MAX-human DNA False 2016-06-30 ENCODE 1 ENCFF549RWC, ENCFF871NUZ 6011079 ENCODE Processing Pipeline b9092bedf104651ae59cc5e1c6395e59 https://www.encodeproject.org/files/ENCFF137BQM/@@download/ENCFF137BQM.bed.gz hg19 released antibody characterized with exemption biological replicates with identical biosample ENCFF185LGX bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 6732109 ENCODE Processing Pipeline 6389b0de0c4dd822db5e985c1821aee5 https://www.encodeproject.org/files/ENCFF185LGX/@@download/ENCFF185LGX.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF001XNB bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HAP 756857 John Stamatoyannopoulos, UW b2b8773c887cd76b652c098c88503eb9 https://www.encodeproject.org/files/ENCFF001XNB/@@download/ENCFF001XNB.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF174YEU bed narrowPeak peaks ENCSR000DQW ChIP-seq EFO:0002783 GM06990 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF131LGY, ENCFF451AFR 3018489 ENCODE Processing Pipeline 050555ae2686fc4c4dc35428f1149d66 https://www.encodeproject.org/files/ENCFF174YEU/@@download/ENCFF174YEU.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms insufficient read depth, poor library complexity, severe bottlenecking ENCFF396UAX bed narrowPeak peaks ENCSR000BQQ ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour TCF12-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF681PEE, ENCFF864UEQ 5996856 ENCODE Processing Pipeline 2abacd5b770dec797ae8c3f10802b033 https://www.encodeproject.org/files/ENCFF396UAX/@@download/ENCFF396UAX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF098ZOI bed narrowPeak peaks ENCSR517FVL ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF047UXO, ENCFF384ZYV 7114804 ENCODE Processing Pipeline 62bf2ddce51ce6253b35e38ded5982d6 https://www.encodeproject.org/files/ENCFF098ZOI/@@download/ENCFF098ZOI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF973RWT bed narrowPeak peaks ENCSR000BKI ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF115HFB, ENCFF279XQE 5595084 ENCODE Processing Pipeline a59fe2e63e0823f05efc3a9a44446be8 https://www.encodeproject.org/files/ENCFF973RWT/@@download/ENCFF973RWT.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF001UTH bed narrowPeak peaks ENCSR000DME ChIP-seq EFO:0005726 LNCaP clone FGC cell line Homo sapiens 17β-hydroxy-17-methylestra-4,9,11-trien-3-one 1 nM 12 hour CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1265974 Vishwanath Iyer, UTA f8f3b52f1d1a700e914ecf1756f6cea7 https://www.encodeproject.org/files/ENCFF001UTH/@@download/ENCFF001UTH.bed.gz hg19 released biological replicates with identical biosample, missing derived_from ENCFF502LWJ bed narrowPeak peaks ENCSR085IXF ChIP-seq UBERON:0002107 liver tissue Homo sapiens SP1-human DNA False 2018-02-08 ENCODE 1 ENCFF180TKR, ENCFF200LFK, ENCFF321UJV 6332253 ENCODE Processing Pipeline 1b4696ff790ef79b25a9eb0f2485d387 https://www.encodeproject.org/files/ENCFF502LWJ/@@download/ENCFF502LWJ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample, experiment not submitted to GEO ENCFF570JVX bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ 1050923 ENCODE Processing Pipeline ca2172ab129944366ef6e528a0d83bcf https://www.encodeproject.org/files/ENCFF570JVX/@@download/ENCFF570JVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF325IOO bed narrowPeak peaks ENCSR265PFQ ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-29 ENCODE 1 ENCFF435OCU, ENCFF508CNG 6480989 ENCODE Processing Pipeline d1c0ba9640cf006ade1f4b49893ae397 https://www.encodeproject.org/files/ENCFF325IOO/@@download/ENCFF325IOO.bed.gz hg19 released antibody characterized with exemption ENCFF189KUR bed narrowPeak peaks ENCSR480LIS ChIP-seq UBERON:0002107 liver tissue Homo sapiens ATF3-human DNA False 2016-03-31 ENCODE 1 ENCFF321UJV, ENCFF978VQG 5470428 ENCODE Processing Pipeline e9d497a192b45edf404a0686e4045169 https://www.encodeproject.org/files/ENCFF189KUR/@@download/ENCFF189KUR.bed.gz hg19 released low read depth, antibody characterized with exemption biological replicates with identical biosample ENCFF789TQP bed narrowPeak peaks ENCSR000DZO ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF229PFV, ENCFF545DZO 903479 ENCODE Processing Pipeline ac6d0a60a78a1be58526956c957270ac https://www.encodeproject.org/files/ENCFF789TQP/@@download/ENCFF789TQP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF647DHT bed narrowPeak peaks ENCSR000BTK ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens GABPA-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF839FNS, ENCFF880DIZ 5076666 ENCODE Processing Pipeline 1bc765088eadfbe7b154cd6d59757a55 https://www.encodeproject.org/files/ENCFF647DHT/@@download/ENCFF647DHT.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF899WHU bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF210NXE, ENCFF574XYY 3175361 ENCODE Processing Pipeline de97e63da95381464b0585cfcc301a51 https://www.encodeproject.org/files/ENCFF899WHU/@@download/ENCFF899WHU.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed run types, control low read depth, low read depth, mixed read lengths mismatched status poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF407JBN bed narrowPeak peaks ENCSR016BMM ChIP-seq UBERON:0002107 liver tissue Homo sapiens TAF1-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF509HEN 5965134 ENCODE Processing Pipeline 27452cd06f2a29eb47a384396a5eea1e https://www.encodeproject.org/files/ENCFF407JBN/@@download/ENCFF407JBN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption biological replicates with identical biosample ENCFF211BEL bed narrowPeak peaks ENCSR000EBP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens GTF2F1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF211HZM, ENCFF599MVB 4970402 ENCODE Processing Pipeline e2bb22eb97f2e1a74fb4cdb2b7e3c270 https://www.encodeproject.org/files/ENCFF211BEL/@@download/ENCFF211BEL.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF046PLS bed narrowPeak peaks ENCSR000BHA ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BCL11A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF197DUH, ENCFF958RTR 4572072 ENCODE Processing Pipeline a49f776dcecfc81d1074693be4a16e5e https://www.encodeproject.org/files/ENCFF046PLS/@@download/ENCFF046PLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF464UMR bed narrowPeak peaks ENCSR000BQH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour BCL3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF788NMA, ENCFF864UEQ 6366838 ENCODE Processing Pipeline e2926302ad89a29921a7102fffba1dbb https://www.encodeproject.org/files/ENCFF464UMR/@@download/ENCFF464UMR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF001XQL bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HLP 772867 John Stamatoyannopoulos, UW faa325fa72bc1c6e7f185585149f625a https://www.encodeproject.org/files/ENCFF001XQL/@@download/ENCFF001XQL.bed.gz hg19 archived control low read depth, low read length, low read depth ENCFF988DJT bed narrowPeak peaks ENCSR000DTO ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF052OHY, ENCFF289VTR 4046478 ENCODE Processing Pipeline 841040790c05ee2cf51325df54a9716d https://www.encodeproject.org/files/ENCFF988DJT/@@download/ENCFF988DJT.bed.gz hg19 released control low read depth, low read length, low read depth ENCFF985GJY bed narrowPeak peaks ENCSR000BHS ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF044MEQ, ENCFF820GCU 3898821 ENCODE Processing Pipeline 160a39955ee9d582777a912c33db6628 https://www.encodeproject.org/files/ENCFF985GJY/@@download/ENCFF985GJY.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF316GUJ bed narrowPeak peaks ENCSR000BGM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF523DNB 4140152 ENCODE Processing Pipeline 61ce2d1eaafd5cd80daec838734efe7b https://www.encodeproject.org/files/ENCFF316GUJ/@@download/ENCFF316GUJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF555YAB bed narrowPeak peaks ENCSR080XEY ChIP-seq UBERON:0002107 liver tissue Homo sapiens FOXA2-human DNA False 2016-06-30 ENCODE 1 ENCFF359TIO, ENCFF460ORU 4994489 ENCODE Processing Pipeline c37fc9bf8e4fcbe2205e5a2f3a31c539 https://www.encodeproject.org/files/ENCFF555YAB/@@download/ENCFF555YAB.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption biological replicates with identical biosample ENCFF814CGS bed narrowPeak peaks ENCSR000BGZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TCF12-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF208RHL, ENCFF958RTR 4455185 ENCODE Processing Pipeline 782d288d4ded497bdcde03c923300814 https://www.encodeproject.org/files/ENCFF814CGS/@@download/ENCFF814CGS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF785UNT bed narrowPeak peaks ENCSR000BJS ChIP-seq EFO:0001247 T47D cell line Homo sapiens genistein 100 nM 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF002HVX, ENCFF191RAG, ENCFF698QEQ 4613574 ENCODE Processing Pipeline f2a2b44392d274b5d780315d6e5b37b8 https://www.encodeproject.org/files/ENCFF785UNT/@@download/ENCFF785UNT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF504GWC bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092XNX, ENCFF331ARQ 3084780 ENCODE Processing Pipeline 579a7e054022988ab00ef76fb44b1f7a https://www.encodeproject.org/files/ENCFF504GWC/@@download/ENCFF504GWC.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001XMC bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GXP 843481 John Stamatoyannopoulos, UW d61bc0e3408f71f7fcf0c2dd7f4617be https://www.encodeproject.org/files/ENCFF001XMC/@@download/ENCFF001XMC.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF528DMI bed narrowPeak peaks ENCSR000DPS ChIP-seq NTR:0000480 AG09319 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF696BBG, ENCFF812WDD 4401073 ENCODE Processing Pipeline 820fbed7097a8adba626db1c162985ef https://www.encodeproject.org/files/ENCFF528DMI/@@download/ENCFF528DMI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample ENCFF992AXF bed narrowPeak peaks ENCSR418KUS ChIP-seq CL:0000103 bipolar neuron in vitro differentiated cells Homo sapiens doxycycline hyclate 0.5 μg/mL 4 day ZEB1-human DNA False 2018-03-16 ENCODE 1 ENCFF577VTU, ENCFF876ZSM 5416341 ENCODE Processing Pipeline 189c0cf31563fea8bd42f85af3204694 https://www.encodeproject.org/files/ENCFF992AXF/@@download/ENCFF992AXF.bed.gz hg19 released low read depth, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF384XYJ bed narrowPeak peaks ENCSR771SNW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX8-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF805INP 6548403 ENCODE Processing Pipeline 39d5602f2d80385b584e10b809583d54 https://www.encodeproject.org/files/ENCFF384XYJ/@@download/ENCFF384XYJ.bed.gz hg19 released low read length, borderline replicate concordance, low read depth experiment not submitted to GEO ENCFF234YBT bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human DNA False 2016-01-14 ENCODE 1 ENCFF465GPJ, ENCFF774NMX 7114931 ENCODE Processing Pipeline 79d418b70086dce5c7e765c1e2642f73 https://www.encodeproject.org/files/ENCFF234YBT/@@download/ENCFF234YBT.bed.gz hg19 released missing genetic modification characterization ENCFF055UFA bed narrowPeak peaks ENCSR000BHG ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 5 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF285CTQ, ENCFF492RDK 4168468 ENCODE Processing Pipeline 0615a01d2769911bebbc5591f4e1beac https://www.encodeproject.org/files/ENCFF055UFA/@@download/ENCFF055UFA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF478WOV bed narrowPeak peaks ENCSR893MYW ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF209HOQ, ENCFF969JNV 7061969 ENCODE Processing Pipeline bcd90b064f2ab7ec6323906c6d492e75 https://www.encodeproject.org/files/ENCFF478WOV/@@download/ENCFF478WOV.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF087MNA bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF938QJA 5449286 ENCODE Processing Pipeline 4556722732e40deaaae36ab6421f2466 https://www.encodeproject.org/files/ENCFF087MNA/@@download/ENCFF087MNA.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF108QPP bed narrowPeak peaks ENCSR549WAU ChIP-seq UBERON:0000945 stomach tissue Homo sapiens CTCF-human DNA False 2016-07-11 ENCODE 1 ENCFF209DDU, ENCFF753TRQ 5531553 ENCODE Processing Pipeline fef8b2498bbc711a8215c421eb56bea4 https://www.encodeproject.org/files/ENCFF108QPP/@@download/ENCFF108QPP.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF797GOG bed narrowPeak peaks ENCSR573WYW ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF585RLR 5281716 ENCODE Processing Pipeline 6aa06e44d0d1f05ae1e789f397450794 https://www.encodeproject.org/files/ENCFF797GOG/@@download/ENCFF797GOG.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF628ZZL bed narrowPeak peaks ENCSR000DZW ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RFX5-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF110OHA, ENCFF276QQY, ENCFF545DZO 3842869 ENCODE Processing Pipeline 3de0644af2684ccabf3006cced7086dd https://www.encodeproject.org/files/ENCFF628ZZL/@@download/ENCFF628ZZL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF224GWF bed narrowPeak peaks ENCSR000BNT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF346RZT, ENCFF925FRM 4818281 ENCODE Processing Pipeline c31a6a7181a1bd4c06f07cbba3a96d5c https://www.encodeproject.org/files/ENCFF224GWF/@@download/ENCFF224GWF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF536YJT bed narrowPeak peaks ENCSR000BNR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF101PTT, ENCFF356DXM 4194122 ENCODE Processing Pipeline e12b8b3c9acc5a466cbdefcdaa72a1e3 https://www.encodeproject.org/files/ENCFF536YJT/@@download/ENCFF536YJT.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample ENCFF955NAK bed narrowPeak peaks ENCSR000DZY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens NFE2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF420MOQ, ENCFF570FPY 5479 ENCODE Processing Pipeline b1936af0d64b4ab0da80648a0919ba88 https://www.encodeproject.org/files/ENCFF955NAK/@@download/ENCFF955NAK.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample control insufficient read depth ENCFF107CSR bed narrowPeak peaks ENCSR000AQK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD1-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF847WER 7166750 ENCODE Processing Pipeline 4f0553da8e494c374dd563f90b3b825f https://www.encodeproject.org/files/ENCFF107CSR/@@download/ENCFF107CSR.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths insufficient replicate concordance ENCFF902CAT bed narrowPeak peaks ENCSR000EBW ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF143-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF138HXG, ENCFF599MVB 5160091 ENCODE Processing Pipeline ad3aaa9c1dc132c5833b11faf7921238 https://www.encodeproject.org/files/ENCFF902CAT/@@download/ENCFF902CAT.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF976ZDJ bed narrowPeak peaks ENCSR000BHU ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens RXRA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF472OOV, ENCFF881TVG 4715135 ENCODE Processing Pipeline d285161d03f747e315842948f5b89f3d https://www.encodeproject.org/files/ENCFF976ZDJ/@@download/ENCFF976ZDJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient replicate concordance missing control alignments ENCFF001XUC bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HYH 519810 John Stamatoyannopoulos, UW d6148e5d95de79bc574b39101563b597 https://www.encodeproject.org/files/ENCFF001XUC/@@download/ENCFF001XUC.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF658PRB bed narrowPeak peaks ENCSR000DYB ChIP-seq EFO:0001260 WI38 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF681UDE, ENCFF720CUU 3859097 ENCODE Processing Pipeline 7e18aacfd30ad12f732a1a305f7f28a3 https://www.encodeproject.org/files/ENCFF658PRB/@@download/ENCFF658PRB.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking insufficient read depth ENCFF695SDJ bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF764OHG 2226729 ENCODE Processing Pipeline e5fa53b68f9680bfff30fcb11a3997e2 https://www.encodeproject.org/files/ENCFF695SDJ/@@download/ENCFF695SDJ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF570BGF bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676WXJ, ENCFF710NTS 5126978 ENCODE Processing Pipeline 3dbc54e6e80b80390a000d4502766d78 https://www.encodeproject.org/files/ENCFF570BGF/@@download/ENCFF570BGF.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF652LUF bed narrowPeak peaks ENCSR000BQN ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens TAF1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF041XFO, ENCFF741GJT 1938123 ENCODE Processing Pipeline d57001c9cefaa2309b6101ad50938784 https://www.encodeproject.org/files/ENCFF652LUF/@@download/ENCFF652LUF.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance biological replicates with identical biosample insufficient read depth ENCFF442YIG bed narrowPeak peaks ENCSR000EXX ChIP-seq EFO:0002324 Raji cell line Homo sapiens POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF491VFV, ENCFF835ZVB 1981618 ENCODE Processing Pipeline fff1b6df92ff4f1efc27ece7e5dd72de https://www.encodeproject.org/files/ENCFF442YIG/@@download/ENCFF442YIG.bed.gz hg19 released control low read depth, low read length biological replicates with identical biosample insufficient read depth ENCFF050JYN bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF743JWE 3663233 ENCODE Processing Pipeline 1017df22cef1ab3d6851b3a7962ed2fd https://www.encodeproject.org/files/ENCFF050JYN/@@download/ENCFF050JYN.bed.gz hg19 released low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF001UTU bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1610589 Vishwanath Iyer, UTA 5125c16af17d12c111cc557b5d208526 https://www.encodeproject.org/files/ENCFF001UTU/@@download/ENCFF001UTU.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing derived_from, biological replicates with identical biosample missing control alignments ENCFF192XNZ bed narrowPeak peaks ENCSR000DMN ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF144ODF, ENCFF602XLT 6492150 ENCODE Processing Pipeline f4d1fe9e47af65775498fc79762d2c92 https://www.encodeproject.org/files/ENCFF192XNZ/@@download/ENCFF192XNZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF811QWR bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF282OJT 6238078 ENCODE Processing Pipeline c863eb60784426b6be172bd9933ced69 https://www.encodeproject.org/files/ENCFF811QWR/@@download/ENCFF811QWR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths inconsistent mapped reads lengths insufficient read depth, insufficient read length ENCFF113DAW bed narrowPeak peaks ENCSR000AOO ChIP-seq CL:0000127 astrocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB 2926748 ENCODE Processing Pipeline e4f9f3a12e9ca2ddc1ff6d8b828d1ff7 https://www.encodeproject.org/files/ENCFF113DAW/@@download/ENCFF113DAW.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth ENCFF001XNE bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 348426 John Stamatoyannopoulos, UW 0937a2f281cf29fb441eb5ebd93fb187 https://www.encodeproject.org/files/ENCFF001XNE/@@download/ENCFF001XNE.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF002DCF bed narrowPeak optimal idr thresholded peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HBB 54731 ENCODE Consortium Analysis Working Group 596392705bd0e7954538494d7f40be01 https://www.encodeproject.org/files/ENCFF002DCF/@@download/ENCFF002DCF.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF978PVD bed narrowPeak peaks ENCSR000DQY ChIP-seq EFO:0005353 GM12801 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF277HVR, ENCFF719YWQ 1065559 ENCODE Processing Pipeline 8081abaedd896f40b8d1005cae14d10c https://www.encodeproject.org/files/ENCFF978PVD/@@download/ENCFF978PVD.bed.gz hg19 released control low read depth inconsistent mapped reads lengths insufficient read length extremely low read depth ENCFF492CRC bed narrowPeak peaks ENCSR000EBO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF526QOE, ENCFF599MVB 6018756 ENCODE Processing Pipeline 8430bf521a8ada5c6b0064dbe64af0c2 https://www.encodeproject.org/files/ENCFF492CRC/@@download/ENCFF492CRC.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF221BNG bed narrowPeak peaks ENCSR000EVU ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens FOS-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF379GUA, ENCFF601TQG 4326814 ENCODE Processing Pipeline 05f70fab58f708b8a00ab08b76fafae1 https://www.encodeproject.org/files/ENCFF221BNG/@@download/ENCFF221BNG.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample, duplicate lane review insufficient read depth ENCFF157CCV bed narrowPeak peaks ENCSR000BLE ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF074KQO, ENCFF334MOO, ENCFF346RZT 5711586 ENCODE Processing Pipeline 59d72d95c35bacf00f7f0b1a0cdfb2d7 https://www.encodeproject.org/files/ENCFF157CCV/@@download/ENCFF157CCV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF451WEI bed narrowPeak peaks ENCSR000BIZ ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour ESR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF277EKP, ENCFF279XQE 4065145 ENCODE Processing Pipeline d00e3137be38bb46c7bd1a1e9ff01750 https://www.encodeproject.org/files/ENCFF451WEI/@@download/ENCFF451WEI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF433NME bed narrowPeak peaks ENCSR000BIU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF319RMX, ENCFF356DXM 4147598 ENCODE Processing Pipeline 8b2e89d72faad863a6227d04785d7ebf https://www.encodeproject.org/files/ENCFF433NME/@@download/ENCFF433NME.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF973ZCY bed narrowPeak peaks ENCSR000BQA ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF710MZA 4248723 ENCODE Processing Pipeline d2d3bbbc4cb7e5e3e6bbb5b17306c535 https://www.encodeproject.org/files/ENCFF973ZCY/@@download/ENCFF973ZCY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF205TFY bed narrowPeak peaks ENCSR000BTL ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF052RMO, ENCFF880DIZ 6292088 ENCODE Processing Pipeline 0f455ffd056fa8375ad3a8a18bc2f9e5 https://www.encodeproject.org/files/ENCFF205TFY/@@download/ENCFF205TFY.bed.gz hg19 released low read depth biological replicates with identical biosample ENCFF674BPH bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF144FIS, ENCFF750MIM 755262 ENCODE Processing Pipeline 0dd0eeeb0b8df3d7fc9612b201349848 https://www.encodeproject.org/files/ENCFF674BPH/@@download/ENCFF674BPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample control insufficient read depth ENCFF671OTI bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human DNA False 2016-09-01 ENCODE 1 ENCFF207OPF, ENCFF581ZJL 6525471 ENCODE Processing Pipeline a33f2e2aa0d57c1b11a69c5be5a45e49 https://www.encodeproject.org/files/ENCFF671OTI/@@download/ENCFF671OTI.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth ENCFF630PWI bed narrowPeak peaks ENCSR000DYZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TBL1XR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF581YGH 4523214 ENCODE Processing Pipeline d588aa903bae23565f688e60e4433892 https://www.encodeproject.org/files/ENCFF630PWI/@@download/ENCFF630PWI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF528ISK bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178KOP, ENCFF574XYY 4417958 ENCODE Processing Pipeline d3f7cca88a9ed3ff600d59ee4106d0fb https://www.encodeproject.org/files/ENCFF528ISK/@@download/ENCFF528ISK.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF947WYS bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF972AUH 1865185 ENCODE Processing Pipeline 448a218d0b8b82117f2a236becd6d1c4 https://www.encodeproject.org/files/ENCFF947WYS/@@download/ENCFF947WYS.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF547PLM bed narrowPeak peaks ENCSR000ECC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens NRF1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF563ODJ, ENCFF599MVB 3842919 ENCODE Processing Pipeline 8a6974cded2ec2a82d697875422697da https://www.encodeproject.org/files/ENCFF547PLM/@@download/ENCFF547PLM.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF379HMO bed narrowPeak peaks ENCSR000ARO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF208SHP, ENCFF250VFW, ENCFF517CBX 5060726 ENCODE Processing Pipeline a7a9bbf95498a766108e4e19e4588e0f https://www.encodeproject.org/files/ENCFF379HMO/@@download/ENCFF379HMO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking missing control alignments ENCFF156VOX bed narrowPeak peaks ENCSR000DYV ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MAFK-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF950RDW 4127787 ENCODE Processing Pipeline 5fb4ad72b7d1e5259ddfb37a52de0c4a https://www.encodeproject.org/files/ENCFF156VOX/@@download/ENCFF156VOX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF502RRE bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5696563 ENCODE Processing Pipeline 32f2bd9019aab85b93463fbbde3fa570 https://www.encodeproject.org/files/ENCFF502RRE/@@download/ENCFF502RRE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF794YQY bed narrowPeak peaks ENCSR251OVJ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens SMAD5-human DNA False 2016-02-02 ENCODE 1 ENCFF840IOC, ENCFF927EKA 5902503 ENCODE Processing Pipeline 27f17640ac9d66f593f212a03fe30789 https://www.encodeproject.org/files/ENCFF794YQY/@@download/ENCFF794YQY.bed.gz hg19 archived low read depth, antibody characterized with exemption ENCFF217YTB bed narrowPeak peaks ENCSR000AVC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM4A-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF031PSI, ENCFF727XHW 5884837 ENCODE Processing Pipeline e9c545a581e9e311856af6adc5edcd91 https://www.encodeproject.org/files/ENCFF217YTB/@@download/ENCFF217YTB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF648NVD bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF719VRZ 6216410 ENCODE Processing Pipeline 87ad634f7b226f042012f921a2cbbf20 https://www.encodeproject.org/files/ENCFF648NVD/@@download/ENCFF648NVD.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO partially characterized antibody ENCFF196LRG bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF788CTS, ENCFF998GMZ 5084258 ENCODE Processing Pipeline 938c4d948378101e300b807bce985979 https://www.encodeproject.org/files/ENCFF196LRG/@@download/ENCFF196LRG.bed.gz hg19 released control low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF129JER bed narrowPeak peaks ENCSR000BQC ChIP-seq CL:0002618 endothelial cell of umbilical vein primary cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF234MAA, ENCFF744BNI 5459312 ENCODE Processing Pipeline 2862010fb32255d45088e7fc2a69a287 https://www.encodeproject.org/files/ENCFF129JER/@@download/ENCFF129JER.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF476SFW bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 6617588 ENCODE Processing Pipeline a940ff177e24989326b8ab5af6fd02b1 https://www.encodeproject.org/files/ENCFF476SFW/@@download/ENCFF476SFW.bed.gz hg19 released mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF395ELT bed narrowPeak peaks ENCSR618HNF ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2017-06-01 ENCODE 1 ENCFF495IVB, ENCFF629IGF 6754226 ENCODE Processing Pipeline 046e6d2f9ea822b4ffc71022bbdd8ba1 https://www.encodeproject.org/files/ENCFF395ELT/@@download/ENCFF395ELT.bed.gz hg19 archived mild to moderate bottlenecking, low read depth experiment not submitted to GEO insufficient read length ENCFF477EJA bed narrowPeak peaks ENCSR761RDB ChIP-seq UBERON:0001157 transverse colon tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF534JTX 5364675 ENCODE Processing Pipeline 160bcee42e6ba15647b39857e8fdb60c https://www.encodeproject.org/files/ENCFF477EJA/@@download/ENCFF477EJA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF073TAO bed narrowPeak peaks ENCSR779NON ChIP-seq UBERON:0010414 omental fat pad tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF012SRD 5908314 ENCODE Processing Pipeline 9f48faafd5fc62fa7eb8cb62d40b4acb https://www.encodeproject.org/files/ENCFF073TAO/@@download/ENCFF073TAO.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF245JXB bed narrowPeak peaks ENCSR450BLH ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF259DRG, ENCFF837NJP 7170562 ENCODE Processing Pipeline a44cb707f8b90ef0f032ad67b19427dd https://www.encodeproject.org/files/ENCFF245JXB/@@download/ENCFF245JXB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF400JWL bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF846HET 3916390 ENCODE Processing Pipeline 486a998417a0cec22b14892410863eb3 https://www.encodeproject.org/files/ENCFF400JWL/@@download/ENCFF400JWL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF840UUG bed narrowPeak peaks ENCSR878DES ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens eGFP-ZNF624-human DNA formaldehyde False 2017-04-06 ENCODE 1 ENCFF443BJC 6705783 ENCODE Processing Pipeline a8767c075632ab9f7dafdadb240bc3c6 https://www.encodeproject.org/files/ENCFF840UUG/@@download/ENCFF840UUG.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF093WNM bed narrowPeak peaks ENCSR000DZS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens BRCA1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF080UUC, ENCFF110OHA, ENCFF545DZO 35610 ENCODE Processing Pipeline a5a9f0712ebc4d0f98401a4fc751fbe4 https://www.encodeproject.org/files/ENCFF093WNM/@@download/ENCFF093WNM.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF162CMX bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF786FUF 2638510 ENCODE Processing Pipeline f5b08c1bb672d0c431f41530b2bea7fe https://www.encodeproject.org/files/ENCFF162CMX/@@download/ENCFF162CMX.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF001XPO bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HIL 531792 John Stamatoyannopoulos, UW ce871a4739488497f410aa5a2f67ea93 https://www.encodeproject.org/files/ENCFF001XPO/@@download/ENCFF001XPO.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF542XFE bed narrowPeak peaks ENCSR000DSZ ChIP-seq CL:0002603 astrocyte of the cerebellum primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF188FPI, ENCFF935VDG 4274351 ENCODE Processing Pipeline 4e17e26fd1b6a5c426615f1e6b8b4972 https://www.encodeproject.org/files/ENCFF542XFE/@@download/ENCFF542XFE.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity insufficient read depth missing control alignments ENCFF070OIO bed narrowPeak peaks ENCSR000EFI ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens CTCF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF601AUG, ENCFF847VPR 4526183 ENCODE Processing Pipeline 5e6f91d553784df46f528446508d89e0 https://www.encodeproject.org/files/ENCFF070OIO/@@download/ENCFF070OIO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample missing control alignments ENCFF371ZTN bed narrowPeak peaks ENCSR000ATS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162SNW, ENCFF727XHW, ENCFF850EIY 7297537 ENCODE Processing Pipeline ac165fa23d62749776220e355048b68c https://www.encodeproject.org/files/ENCFF371ZTN/@@download/ENCFF371ZTN.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity inconsistent mapped reads lengths ENCFF001XTD bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HUP 790660 John Stamatoyannopoulos, UW d4ea64eaea2f05ee0678a03549222ff0 https://www.encodeproject.org/files/ENCFF001XTD/@@download/ENCFF001XTD.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF290QTC bed narrowPeak peaks ENCSR000DWQ ChIP-seq CL:1001608 foreskin fibroblast primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF162IBF, ENCFF987CLO 4172588 ENCODE Processing Pipeline c83f9d4b944561148e95b446b35f20b5 https://www.encodeproject.org/files/ENCFF290QTC/@@download/ENCFF290QTC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth missing control alignments ENCFF001XSP bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HSM 670740 John Stamatoyannopoulos, UW 51c19667f82b60e6f98247c4100e027e https://www.encodeproject.org/files/ENCFF001XSP/@@download/ENCFF001XSP.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF232MQQ bed narrowPeak peaks ENCSR000DVQ ChIP-seq CL:0002558 fibroblast of villous mesenchyme primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF569PMD, ENCFF807YUN 4278177 ENCODE Processing Pipeline e54e5a4b72715fa2cc2debc8c420f6fe https://www.encodeproject.org/files/ENCFF232MQQ/@@download/ENCFF232MQQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth insufficient read depth ENCFF280XEL bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701KUD, ENCFF825FLR 5191119 ENCODE Processing Pipeline e509edea4142432ef5a6bd1bb6fcb50b https://www.encodeproject.org/files/ENCFF280XEL/@@download/ENCFF280XEL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample ENCFF947MLS bed narrowPeak peaks ENCSR000BGY ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens IRF4-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356JEO, ENCFF958RTR 4944540 ENCODE Processing Pipeline 23cacd9104eb0e6ac4bddb8c98fccb78 https://www.encodeproject.org/files/ENCFF947MLS/@@download/ENCFF947MLS.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF277KXQ bed narrowPeak peaks ENCSR000BLF ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens HNF4A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ 2869150 ENCODE Processing Pipeline 9d8580ba0249475bc978a9694b61ede8 https://www.encodeproject.org/files/ENCFF277KXQ/@@download/ENCFF277KXQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF686LNT bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF187TCP, ENCFF493QSH 4512649 ENCODE Processing Pipeline fa9e187e5f39fb2784f5a5bc36f31368 https://www.encodeproject.org/files/ENCFF686LNT/@@download/ENCFF686LNT.bed.gz hg19 released low read length, borderline replicate concordance experiment not submitted to GEO insufficient read depth ENCFF771WFB bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF108WAD, ENCFF647LGE, ENCFF713KWF 5969136 ENCODE Processing Pipeline 15028b121038cbdc39e9bb1a764f4b87 https://www.encodeproject.org/files/ENCFF771WFB/@@download/ENCFF771WFB.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF445TVF bed narrowPeak peaks ENCSR935XOT ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens POLR2A-human DNA False 2017-04-04 ENCODE 1 ENCFF146RSB, ENCFF304OGW 5415933 ENCODE Processing Pipeline c63216618b224250bd926eeed19e9f4b https://www.encodeproject.org/files/ENCFF445TVF/@@download/ENCFF445TVF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF517GFP bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF929JOF 3101096 ENCODE Processing Pipeline e2be7bd7967e11d555813e58abd60384 https://www.encodeproject.org/files/ENCFF517GFP/@@download/ENCFF517GFP.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF052OWI bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF691WRY 2438263 ENCODE Processing Pipeline 8e39fba942c4a657192a5716e9c84702 https://www.encodeproject.org/files/ENCFF052OWI/@@download/ENCFF052OWI.bed.gz hg19 released control low read depth, borderline replicate concordance, mixed read lengths biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF943NWC bed narrowPeak peaks ENCSR000BGA ChIP-seq EFO:0005234 PFSK-1 cell line Homo sapiens FOXP2-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294SLK, ENCFF320MKV 4381800 ENCODE Processing Pipeline ff709f8932822e4c965020216e08c271 https://www.encodeproject.org/files/ENCFF943NWC/@@download/ENCFF943NWC.bed.gz hg19 released control low read depth, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample insufficient read depth extremely low read depth, extremely low read length ENCFF052IOC bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human DNA False 2016-03-30 ENCODE 1 ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 6746160 ENCODE Processing Pipeline bd04ead3bc991eac41605e6d188659e2 https://www.encodeproject.org/files/ENCFF052IOC/@@download/ENCFF052IOC.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF838ZHL bed narrowPeak peaks ENCSR000BRL ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SIX5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF218ESX, ENCFF864UEQ 5980557 ENCODE Processing Pipeline a169d3a0d116ac4d0fc13d4112e1f1ce https://www.encodeproject.org/files/ENCFF838ZHL/@@download/ENCFF838ZHL.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF493TPH bed narrowPeak peaks ENCSR000BJH ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens PAX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF376UIU, ENCFF755PSY 2982299 ENCODE Processing Pipeline c7574401499458a16387560a781d573c https://www.encodeproject.org/files/ENCFF493TPH/@@download/ENCFF493TPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth, severe bottlenecking ENCFF001XSW bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HTS 1013925 John Stamatoyannopoulos, UW f2e1890897b03a2fd59a60948dbba044 https://www.encodeproject.org/files/ENCFF001XSW/@@download/ENCFF001XSW.bed.gz hg19 archived low read length, low read depth ENCFF645FWE bed narrowPeak peaks ENCSR000DWH ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF340AIJ, ENCFF860VSM 4848814 ENCODE Processing Pipeline c0f9e12349771232e46952409185fd6a https://www.encodeproject.org/files/ENCFF645FWE/@@download/ENCFF645FWE.bed.gz hg19 released low read length, low read depth ENCFF542MFI bed narrowPeak peaks ENCSR000BQE ChIP-seq EFO:0005718 Ishikawa cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour CTCF-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF279XQE, ENCFF477SJG 4000778 ENCODE Processing Pipeline d6e6bfd129d3f8acce8ab9083367880e https://www.encodeproject.org/files/ENCFF542MFI/@@download/ENCFF542MFI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF585NXD bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF739PBB 2492541 ENCODE Processing Pipeline fa09b91df9b9e0ad5cd4892b4d9449f9 https://www.encodeproject.org/files/ENCFF585NXD/@@download/ENCFF585NXD.bed.gz hg19 released mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF767PWR bed narrowPeak peaks ENCSR584GHV ChIP-seq EFO:0001086 A549 cell line Homo sapiens NFE2L2-human DNA False 2014-07-07 ENCODE 1 ENCFF123GAA, ENCFF863STQ 4890176 ENCODE Processing Pipeline ca6a707d4723826b6a0a599ed69c3325 https://www.encodeproject.org/files/ENCFF767PWR/@@download/ENCFF767PWR.bed.gz hg19 released low read length, borderline replicate concordance ENCFF827WKX bed narrowPeak peaks ENCSR487CPI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens 3xFLAG-ZFP64-human DNA False 2016-11-08 ENCODE 1 ENCFF203ABR, ENCFF749AGZ 6575494 ENCODE Processing Pipeline 70cf963599a4067dd0af68d639846f8b https://www.encodeproject.org/files/ENCFF827WKX/@@download/ENCFF827WKX.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review missing control alignments ENCFF745GHM bed narrowPeak peaks ENCSR046INL ChIP-seq UBERON:0000473 testis tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF991CXG 5150204 ENCODE Processing Pipeline 38ed709911e0f7a34d5f0bd3aea6834d https://www.encodeproject.org/files/ENCFF745GHM/@@download/ENCFF745GHM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF338SNH bed narrowPeak peaks ENCSR000EBZ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF437UHI, ENCFF599MVB 5302704 ENCODE Processing Pipeline d3cd21bd45637001a6a246301c7291c1 https://www.encodeproject.org/files/ENCFF338SNH/@@download/ENCFF338SNH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF953NJX bed narrowPeak peaks ENCSR754DWU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF792NXA, ENCFF817IUK 6593429 ENCODE Processing Pipeline 88c95780223a3e812645a67aa6c12e11 https://www.encodeproject.org/files/ENCFF953NJX/@@download/ENCFF953NJX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF711IWR bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF978GBP 2129248 ENCODE Processing Pipeline 6544a6b0ba76e1f622f6e2ca2b5b305d https://www.encodeproject.org/files/ENCFF711IWR/@@download/ENCFF711IWR.bed.gz hg19 released mild to moderate bottlenecking, mixed read lengths biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient read length ENCFF935KIG bed narrowPeak peaks ENCSR000BHM ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF687USK 3407756 ENCODE Processing Pipeline 7b58f1bde9908c70d4575c07b2ce1c31 https://www.encodeproject.org/files/ENCFF935KIG/@@download/ENCFF935KIG.bed.gz hg19 released low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF323HOG bed narrowPeak peaks ENCSR000BGK ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF334MOO, ENCFF776GGM 4434879 ENCODE Processing Pipeline 65a64cbb6c73d2ce7a1dec80ebbfa186 https://www.encodeproject.org/files/ENCFF323HOG/@@download/ENCFF323HOG.bed.gz hg19 released control low read depth, low read length, low read depth, borderline replicate concordance biological replicates with identical biosample missing control alignments ENCFF938NIP bed narrowPeak peaks ENCSR964BKO ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF288DHW, ENCFF894GZN 6788148 ENCODE Processing Pipeline 881e4ad73aa8cb3ea20276d0f000d439 https://www.encodeproject.org/files/ENCFF938NIP/@@download/ENCFF938NIP.bed.gz hg19 released antibody characterized with exemption ENCFF958QPG bed narrowPeak peaks ENCSR877OYD ChIP-seq UBERON:0006920 esophagus squamous epithelium tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF240WVD, ENCFF654TGQ 5567878 ENCODE Processing Pipeline 9770dc4c666f74cc83a05b3f0cfdc872 https://www.encodeproject.org/files/ENCFF958QPG/@@download/ENCFF958QPG.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF320LNM bed narrowPeak peaks ENCSR000DYD ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF292MAD, ENCFF296BML, ENCFF512WDI 4801539 ENCODE Processing Pipeline 3cf14959a446c6703ff85a94b0c19eae https://www.encodeproject.org/files/ENCFF320LNM/@@download/ENCFF320LNM.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment biological replicates with identical biosample ENCFF740XZM bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF386SKS, ENCFF522HDC 6214545 ENCODE Processing Pipeline b15faa2477afa58c67eb3d8a2425d543 https://www.encodeproject.org/files/ENCFF740XZM/@@download/ENCFF740XZM.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF178CPV bed narrowPeak peaks ENCSR000ARD ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ 3611423 ENCODE Processing Pipeline aa57a289d0f83c5406354f8f0fbef9cf https://www.encodeproject.org/files/ENCFF178CPV/@@download/ENCFF178CPV.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF083HDR bed narrowPeak peaks ENCSR000BGI ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY 4469694 ENCODE Processing Pipeline 03ef3cbb3fb149e90b9b0bd0f99b3e77 https://www.encodeproject.org/files/ENCFF083HDR/@@download/ENCFF083HDR.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths biological replicates with identical biosample insufficient read depth extremely low read length ENCFF506XWQ bed narrowPeak peaks ENCSR684NJD ChIP-seq UBERON:0000945 stomach tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF983YSM 6431186 ENCODE Processing Pipeline 987169f530e84dbad71415b43f57d6fc https://www.encodeproject.org/files/ENCFF506XWQ/@@download/ENCFF506XWQ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF596KVH bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF703KIU, ENCFF710NTS 4250099 ENCODE Processing Pipeline 25bcfe841e4379e12213ec46fd0af751 https://www.encodeproject.org/files/ENCFF596KVH/@@download/ENCFF596KVH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF263ADC bed narrowPeak peaks ENCSR000EFJ ChIP-seq EFO:0001196 IMR-90 cell line Homo sapiens RAD21-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF191DFR, ENCFF279TIW, ENCFF601AUG 5262024 ENCODE Processing Pipeline 6a22bc02bdba44937419fc7fe2baf9e6 https://www.encodeproject.org/files/ENCFF263ADC/@@download/ENCFF263ADC.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF450XID bed narrowPeak peaks ENCSR606TNN ChIP-seq UBERON:0000996 vagina tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF197PVC, ENCFF662LAZ 6170994 ENCODE Processing Pipeline b1a430c00c8370217dc3d85c7b14bc81 https://www.encodeproject.org/files/ENCFF450XID/@@download/ENCFF450XID.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF001XQT bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HMJ 1160101 John Stamatoyannopoulos, UW 8e75d4cdb45b6964f189224cec21cb70 https://www.encodeproject.org/files/ENCFF001XQT/@@download/ENCFF001XQT.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF425BCQ bed narrowPeak peaks ENCSR000DTW ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF020GGX, ENCFF986XGP 3434760 ENCODE Processing Pipeline 10a066425c1f4c4901f1e63c66a31b81 https://www.encodeproject.org/files/ENCFF425BCQ/@@download/ENCFF425BCQ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth extremely low read depth ENCFF267ZRT bed narrowPeak peaks ENCSR485BEB ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF061QYS, ENCFF667NBG 6347578 ENCODE Processing Pipeline 321abfd8144953b709e3a6bce9119524 https://www.encodeproject.org/files/ENCFF267ZRT/@@download/ENCFF267ZRT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF976ZTX bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU 5026248 ENCODE Processing Pipeline e1c449a8b60fd62bdb4142bad0d04618 https://www.encodeproject.org/files/ENCFF976ZTX/@@download/ENCFF976ZTX.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF626GCR bed narrowPeak peaks ENCSR000BGS ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF305OWM, ENCFF958RTR 4217685 ENCODE Processing Pipeline 713f7c15938a74780918c02c698d614e https://www.encodeproject.org/files/ENCFF626GCR/@@download/ENCFF626GCR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF236CLN bed narrowPeak peaks ENCSR414TPL ChIP-seq UBERON:0004550 gastroesophageal sphincter tissue Homo sapiens POLR2A-human DNA False 2017-05-17 ENCODE 1 ENCFF535PHN, ENCFF759NQV 6343065 ENCODE Processing Pipeline 724225d7918a98c0ca31cbf1a8de86c2 https://www.encodeproject.org/files/ENCFF236CLN/@@download/ENCFF236CLN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF318UXE bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032EXY, ENCFF701KUD 2363535 ENCODE Processing Pipeline adc1ffb997c20bbb67d594a28cededba https://www.encodeproject.org/files/ENCFF318UXE/@@download/ENCFF318UXE.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth biological replicates with identical biosample insufficient read depth, poor library complexity, severe bottlenecking ENCFF820XSG bed narrowPeak peaks ENCSR000BLX ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF108EFL, ENCFF587REM 3409067 ENCODE Processing Pipeline 5d8b401c22832a544d749ac4071014be https://www.encodeproject.org/files/ENCFF820XSG/@@download/ENCFF820XSG.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF608RBZ bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF974OCA 3450296 ENCODE Processing Pipeline 3f12a4be35f1c4062bfcc2b1a3d8e56e https://www.encodeproject.org/files/ENCFF608RBZ/@@download/ENCFF608RBZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, insufficient replicate concordance extremely low read depth ENCFF120OKL bed narrowPeak peaks ENCSR000BLU ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF748LJL 4445050 ENCODE Processing Pipeline d6a9ced05b3809dde3a36c8b2649333f https://www.encodeproject.org/files/ENCFF120OKL/@@download/ENCFF120OKL.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample ENCFF738UPC bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528NQV, ENCFF750MIM 4056488 ENCODE Processing Pipeline 78a14c1120d15e8f3b0da0e358904143 https://www.encodeproject.org/files/ENCFF738UPC/@@download/ENCFF738UPC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF333VJJ bed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF693CKU 4843631 ENCODE Processing Pipeline 9d4599c7a81186ca87e0b18ec19be86f https://www.encodeproject.org/files/ENCFF333VJJ/@@download/ENCFF333VJJ.bed.gz hg19 released control low read depth, low read length, inconsistent platforms ENCFF577OXM bed narrowPeak peaks ENCSR000EUZ ChIP-seq EFO:0001182 HEK293 cell line Homo sapiens TRIM28-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF362FIB, ENCFF549MIW 6829608 ENCODE Processing Pipeline 909ed7f861a4ef988a2e60cdbbc730c4 https://www.encodeproject.org/files/ENCFF577OXM/@@download/ENCFF577OXM.bed.gz hg19 released control low read depth, low read length, borderline replicate concordance ENCFF072BMK bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF433CEB, ENCFF710NTS 5075327 ENCODE Processing Pipeline baca76bc8dd54ade1118dfe4cbaefb37 https://www.encodeproject.org/files/ENCFF072BMK/@@download/ENCFF072BMK.bed.gz hg19 released low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF371JLL bed narrowPeak peaks ENCSR663WAR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens REST-human DNA False 2017-01-08 ENCODE 1 ENCFF243MTV, ENCFF277NVQ, ENCFF727XHW 6668538 ENCODE Processing Pipeline 1712aedc81671a652253f9eab6e6709f https://www.encodeproject.org/files/ENCFF371JLL/@@download/ENCFF371JLL.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption, mixed read lengths ENCFF875HXY bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF649QHV, ENCFF701KUD 1602818 ENCODE Processing Pipeline 81ba7eff0351c58785226e55900ea318 https://www.encodeproject.org/files/ENCFF875HXY/@@download/ENCFF875HXY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample poor library complexity, insufficient replicate concordance, severe bottlenecking extremely low read depth ENCFF255EDE bed narrowPeak peaks ENCSR203QEB ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens CTCF-human DNA False 2017-07-21 ENCODE 1 ENCFF393CEV, ENCFF938FXZ 7008257 ENCODE Processing Pipeline 5b9c43e51c405a24c14ff682f59f7664 https://www.encodeproject.org/files/ENCFF255EDE/@@download/ENCFF255EDE.bed.gz hg19 released mild to moderate bottlenecking NTR biosample ENCFF489ZRF bed narrowPeak peaks ENCSR000DZC ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens RCOR1-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF106HCF, ENCFF110OHA, ENCFF545DZO 4595594 ENCODE Processing Pipeline bbdc5bffc038217e3744e5405b4d1ceb https://www.encodeproject.org/files/ENCFF489ZRF/@@download/ENCFF489ZRF.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF965BIL bed narrowPeak peaks ENCSR000ARH ChIP-seq CL:0000515 skeletal muscle myoblast primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF003XTF, ENCFF208RCO, ENCFF543GAK 4607297 ENCODE Processing Pipeline 0db6f3a2ecbf24296eff6f7f8c6e67c2 https://www.encodeproject.org/files/ENCFF965BIL/@@download/ENCFF965BIL.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF367GGX bed narrowPeak peaks ENCSR122EYE ChIP-seq UBERON:0000945 stomach tissue Homo sapiens POLR2A-human DNA False 2016-07-06 ENCODE 1 ENCFF753TRQ, ENCFF839TMC 5396596 ENCODE Processing Pipeline 68a6646863b0ea0d68ff79e45c889515 https://www.encodeproject.org/files/ENCFF367GGX/@@download/ENCFF367GGX.bed.gz hg19 released control low read depth, antibody characterized with exemption ENCFF967EHX bed narrowPeak peaks ENCSR000DYP ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens ZNF384-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF463YMY, ENCFF545DZO 4220480 ENCODE Processing Pipeline a87b9a89e23b58761891171cd2a7972f https://www.encodeproject.org/files/ENCFF967EHX/@@download/ENCFF967EHX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF160XEU bed narrowPeak peaks ENCSR000ATR ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SAP30-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF258PMU, ENCFF727XHW 4406367 ENCODE Processing Pipeline cc4c74b1342f250ceb26ec69840861fd https://www.encodeproject.org/files/ENCFF160XEU/@@download/ENCFF160XEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, insufficient replicate concordance ENCFF508HQW bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF132LHA, ENCFF750MIM 4290623 ENCODE Processing Pipeline 1aa4372b810d58821068a34162f0722a https://www.encodeproject.org/files/ENCFF508HQW/@@download/ENCFF508HQW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001USA bed narrowPeak peaks ENCSR000DMZ ChIP-seq EFO:0001086 A549 cell line Homo sapiens POLR2A-human DNA see document see document False 2012-08-27 ENCODE 1 1 1165348 Vishwanath Iyer, UTA edf11360e951aea8bcb51a66682293a3 https://www.encodeproject.org/files/ENCFF001USA/@@download/ENCFF001USA.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF860SHD bed narrowPeak peaks ENCSR635XLM ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF108NWA 4668753 ENCODE Processing Pipeline dbb1280f1b1472f7675aa6b8c62d2b1f https://www.encodeproject.org/files/ENCFF860SHD/@@download/ENCFF860SHD.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF104VHX bed narrowPeak peaks ENCSR970UZD ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF262AKB, ENCFF751PAR 6703589 ENCODE Processing Pipeline 39a6843c915a672793f7e5e5bb96a704 https://www.encodeproject.org/files/ENCFF104VHX/@@download/ENCFF104VHX.bed.gz hg19 released antibody characterized with exemption ENCFF001USM bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1123946 Vishwanath Iyer, UTA 6a2827fa697268cc04fce7b8ecc31f4d https://www.encodeproject.org/files/ENCFF001USM/@@download/ENCFF001USM.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF336VRJ bed narrowPeak peaks ENCSR000DLB ChIP-seq EFO:0005346 GM13977 cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF075LLZ, ENCFF085RVS 3514521 ENCODE Processing Pipeline 1c0b9cf2b391dac91f5c84942cb675da https://www.encodeproject.org/files/ENCFF336VRJ/@@download/ENCFF336VRJ.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read depth biological replicates with identical biosample insufficient read depth missing control alignments ENCFF140YDA bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF275STF, ENCFF522HDC 6352142 ENCODE Processing Pipeline 8b9ed27f9e33de801da5affaeec39691 https://www.encodeproject.org/files/ENCFF140YDA/@@download/ENCFF140YDA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth biological replicates with identical biosample, inconsistent mapped reads lengths, out of date analysis insufficient read depth ENCFF585OAO bed narrowPeak peaks ENCSR000ASE ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens EZH2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF530XPP 5268005 ENCODE Processing Pipeline b3856c6679fc00a1712e3de42b8620f5 https://www.encodeproject.org/files/ENCFF585OAO/@@download/ENCFF585OAO.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF781THQ bed narrowPeak peaks ENCSR000EIC ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens CTCF-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX 4888991 ENCODE Processing Pipeline 61add53be443cca89b2fa618eb62f339 https://www.encodeproject.org/files/ENCFF781THQ/@@download/ENCFF781THQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF200SPQ bed narrowPeak peaks ENCSR000BIJ ChIP-seq EFO:0002785 GM12891 cell line Homo sapiens SPI1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF450BQJ, ENCFF864ASU 4645128 ENCODE Processing Pipeline a29d03a40452416dadcf358281a9ed38 https://www.encodeproject.org/files/ENCFF200SPQ/@@download/ENCFF200SPQ.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF543QRY bed narrowPeak peaks ENCSR000BOT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens REST-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF382BNF, ENCFF547MVS 4619504 ENCODE Processing Pipeline 67f14e74605a970c000141095c24671f https://www.encodeproject.org/files/ENCFF543QRY/@@download/ENCFF543QRY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF114UVX bed narrowPeak peaks ENCSR843ZUP ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens EP300-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF204KUW, ENCFF980CFV 6893043 ENCODE Processing Pipeline c568990afad79c1d261d67889408c4f8 https://www.encodeproject.org/files/ENCFF114UVX/@@download/ENCFF114UVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF070BNL bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335FQW, ENCFF750MIM 96930 ENCODE Processing Pipeline 85c6f61e40a3843197f460a194cf9805 https://www.encodeproject.org/files/ENCFF070BNL/@@download/ENCFF070BNL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF835SWC bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human DNA see document see document False 2011-06-03 ENCODE 1 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ 6392683 ENCODE Processing Pipeline 948b5e041781adbef373741551e875b4 https://www.encodeproject.org/files/ENCFF835SWC/@@download/ENCFF835SWC.bed.gz hg19 released low read length, low read depth, missing genetic modification characterization insufficient replicate concordance ENCFF622MTR bed narrowPeak peaks ENCSR000APM ChIP-seq CL:0002551 fibroblast of dermis primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF005RXL, ENCFF138XPE, ENCFF888NSJ 2587546 ENCODE Processing Pipeline 4997657dc1df0656efb6e59a94f8b6a0 https://www.encodeproject.org/files/ENCFF622MTR/@@download/ENCFF622MTR.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity NTR biosample insufficient read depth, severe bottlenecking missing control alignments ENCFF427OVX bed narrowPeak peaks ENCSR000ATC ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF162NDI, ENCFF385UZW, ENCFF451SVK 7129465 ENCODE Processing Pipeline 3db874c77069df603d5724689104ce58 https://www.encodeproject.org/files/ENCFF427OVX/@@download/ENCFF427OVX.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms ENCFF773FKD bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF359UUS, ENCFF750MIM 6546659 ENCODE Processing Pipeline 08864145e19459cd310de1f439f45367 https://www.encodeproject.org/files/ENCFF773FKD/@@download/ENCFF773FKD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF446QIR bed narrowPeak peaks ENCSR055WBT ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF446IZO, ENCFF473HRH 7220208 ENCODE Processing Pipeline 32b8d90c860e6c0bc5ca6a854244b5d7 https://www.encodeproject.org/files/ENCFF446QIR/@@download/ENCFF446QIR.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption ENCFF770MLZ bed narrowPeak peaks ENCSR000EYB ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF826FNF 5575113 ENCODE Processing Pipeline 25f99e416f6c1f21581078ff0309cab0 https://www.encodeproject.org/files/ENCFF770MLZ/@@download/ENCFF770MLZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF977LNV bed narrowPeak peaks ENCSR000AQC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RBBP5-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF690UOA, ENCFF727XHW 5527818 ENCODE Processing Pipeline 2d3326f1eccc07487d950d40a23e21dd https://www.encodeproject.org/files/ENCFF977LNV/@@download/ENCFF977LNV.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth sequencing runs labeled as technical replicates ENCFF756FVQ bed narrowPeak peaks ENCSR000AVB ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF461HDT, ENCFF727XHW 6346222 ENCODE Processing Pipeline a79923dae73edffa84562971f7d18b53 https://www.encodeproject.org/files/ENCFF756FVQ/@@download/ENCFF756FVQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF722MDG bed narrowPeak peaks ENCSR000BNH ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CTCF-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF639ACF 4367319 ENCODE Processing Pipeline ca9c0b3ee19459d7e0f10bc791e8b4e9 https://www.encodeproject.org/files/ENCFF722MDG/@@download/ENCFF722MDG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity biological replicates with identical biosample missing control alignments ENCFF265TSG bed narrowPeak peaks ENCSR000BHI ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF161DLA, ENCFF880YCS 2544254 ENCODE Processing Pipeline cc4c0cbe2396f656a4468b1039dbc7f9 https://www.encodeproject.org/files/ENCFF265TSG/@@download/ENCFF265TSG.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking biological replicates with identical biosample insufficient read depth ENCFF364YCD bed narrowPeak peaks ENCSR000BHH ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF239AAI, ENCFF686SSI 2830949 ENCODE Processing Pipeline 2686da2e4cfab88186b5dc072363644d https://www.encodeproject.org/files/ENCFF364YCD/@@download/ENCFF364YCD.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF504CYN bed narrowPeak peaks ENCSR713SXF ChIP-seq CL:0000746 cardiac muscle cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2017-11-13 ENCODE 1 ENCFF348ECW, ENCFF491GAC 5385312 ENCODE Processing Pipeline ae0d017aa58e276fc61fa7374ba22f93 https://www.encodeproject.org/files/ENCFF504CYN/@@download/ENCFF504CYN.bed.gz hg19 released antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF511ZEU bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF052PXH, ENCFF750MIM 4238268 ENCODE Processing Pipeline 3d1d035ab43db38b2cad069a26cc2e8b https://www.encodeproject.org/files/ENCFF511ZEU/@@download/ENCFF511ZEU.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF238OBY bed narrowPeak peaks ENCSR000EUI ChIP-seq EFO:0005333 GM08714 cell line Homo sapiens ZNF274-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF295UCD, ENCFF650DWC 5522621 ENCODE Processing Pipeline b58467a5c13936b07fd31b5fda9924ce https://www.encodeproject.org/files/ENCFF238OBY/@@download/ENCFF238OBY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF339XPB bed narrowPeak peaks ENCSR000APF ChIP-seq CL:0000062 osteoblast primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE 1690215 ENCODE Processing Pipeline 6c1d1d16dc53a4a51bd93db713ae9e71 https://www.encodeproject.org/files/ENCFF339XPB/@@download/ENCFF339XPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity NTR biosample extremely low read depth ENCFF001UTJ bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 1 1157394 Vishwanath Iyer, UTA 8f64283db264f5c1c21ae25f6526d502 https://www.encodeproject.org/files/ENCFF001UTJ/@@download/ENCFF001UTJ.bed.gz hg19 archived mild to moderate bottlenecking missing derived_from control extremely low read depth, extremely low read depth ENCFF202BTH bed narrowPeak peaks ENCSR000DMH ChIP-seq UBERON:0002048 lung tissue Homo sapiens CTCF-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF882SRJ, ENCFF896LIL 1250139 ENCODE Processing Pipeline 7eae5414e76070f87f5e76fe0d4984de https://www.encodeproject.org/files/ENCFF202BTH/@@download/ENCFF202BTH.bed.gz hg19 released mild to moderate bottlenecking control extremely low read depth, extremely low read depth ENCFF853XFI bed narrowPeak peaks ENCSR000DMR ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF602XLT, ENCFF823CUE 5398649 ENCODE Processing Pipeline e1d166f3632183ab863b5f6a928269f3 https://www.encodeproject.org/files/ENCFF853XFI/@@download/ENCFF853XFI.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample ENCFF571KJQ bed narrowPeak peaks ENCSR307PFP ChIP-seq UBERON:0001150 body of pancreas tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF473HRH, ENCFF847NEY 7148874 ENCODE Processing Pipeline 0b1bee6b8255bda8362d44ac6f64c8f3 https://www.encodeproject.org/files/ENCFF571KJQ/@@download/ENCFF571KJQ.bed.gz hg19 released antibody characterized with exemption ENCFF153LKX bed narrowPeak peaks ENCSR000DMQ ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF124PFW, ENCFF602XLT 5556239 ENCODE Processing Pipeline 30524c665b93a993af908e1be828450c https://www.encodeproject.org/files/ENCFF153LKX/@@download/ENCFF153LKX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF875UKZ bed narrowPeak peaks ENCSR000BHE ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 500 pM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF922TWG 4188656 ENCODE Processing Pipeline 7863ba2f2b8289828e96371ed1b5ed25 https://www.encodeproject.org/files/ENCFF875UKZ/@@download/ENCFF875UKZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF622IDZ bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF717CDL 6199883 ENCODE Processing Pipeline 774fddafb4755bcf348c1ddbf015a7a7 https://www.encodeproject.org/files/ENCFF622IDZ/@@download/ENCFF622IDZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF001XPX bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HJN 1190726 John Stamatoyannopoulos, UW 7f24fb2058862c3a740093c73d2d45a8 https://www.encodeproject.org/files/ENCFF001XPX/@@download/ENCFF001XPX.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF222LZR bed narrowPeak peaks ENCSR000DTA ChIP-seq CL:2000044 brain microvascular endothelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF092GCH, ENCFF778CXN 4671117 ENCODE Processing Pipeline c0d8191b3470523ba74e80141ecd67e9 https://www.encodeproject.org/files/ENCFF222LZR/@@download/ENCFF222LZR.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing control alignments ENCFF755LJZ bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF160TSK, ENCFF710NTS 4579891 ENCODE Processing Pipeline 9bed18f9f50fe4fe253a79d9ac223fdd https://www.encodeproject.org/files/ENCFF755LJZ/@@download/ENCFF755LJZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTN bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HWB 913323 John Stamatoyannopoulos, UW 01fa7d32e0dfdf68296abaa7bd841c06 https://www.encodeproject.org/files/ENCFF001XTN/@@download/ENCFF001XTN.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth ENCFF447AUB bed narrowPeak peaks ENCSR000DXD ChIP-seq CL:0002306 epithelial cell of proximal tubule primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF296JDR, ENCFF634UTF 4548581 ENCODE Processing Pipeline d36a83fab519ffb7689f6387ce332a72 https://www.encodeproject.org/files/ENCFF447AUB/@@download/ENCFF447AUB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth ENCFF001UTL bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 1 1084348 Vishwanath Iyer, UTA ad98c9d0ebbb2d569d21ff92750c60a5 https://www.encodeproject.org/files/ENCFF001UTL/@@download/ENCFF001UTL.bed.gz hg19 archived low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample, missing derived_from poor library complexity ENCFF434LJJ bed narrowPeak peaks ENCSR000DMM ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens MYC-human DNA see document see document False 2012-08-27 ENCODE 1 ENCFF503BOT, ENCFF602XLT 5811613 ENCODE Processing Pipeline 1382c5b118a1d9af944efe50a9d027df https://www.encodeproject.org/files/ENCFF434LJJ/@@download/ENCFF434LJJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample poor library complexity ENCFF656HTA bed narrowPeak peaks ENCSR000ECE ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RAD21-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF361FUX, ENCFF599MVB 4701422 ENCODE Processing Pipeline cc99f3fb940e69afed4dbd187e7f1706 https://www.encodeproject.org/files/ENCFF656HTA/@@download/ENCFF656HTA.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001UTK bed narrowPeak peaks ENCSR000DMP ChIP-seq EFO:0001203 MCF-7 cell line Homo sapiens 17β-estradiol 100 nM 45 minute MYC-human DNA see document see document False 2011-03-17 ENCODE 1 1 385865 Vishwanath Iyer, UTA bea123167eb09018fddc1f18affb7aa9 https://www.encodeproject.org/files/ENCFF001UTK/@@download/ENCFF001UTK.bed.gz hg19 released low read length, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from ENCFF099KUG bed narrowPeak peaks ENCSR000DOT ChIP-seq EFO:0001200 MCF 10A cell line Homo sapiens ethanol 0.01 percent 36.0 hour FOS-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF079OBK, ENCFF425RUE 5634046 ENCODE Processing Pipeline be521fd5b10c13fdad79b6360b7a41a4 https://www.encodeproject.org/files/ENCFF099KUG/@@download/ENCFF099KUG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization duplicate lane review, biological replicates with identical biosample ENCFF514FIR bed narrowPeak peaks ENCSR000DLJ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF199MPO, ENCFF846ANN 4467249 ENCODE Processing Pipeline dd4c639b3e5251dfd1c6316f9225ab7b https://www.encodeproject.org/files/ENCFF514FIR/@@download/ENCFF514FIR.bed.gz hg19 released low read length, low read depth control extremely low read depth ENCFF999FLX bed narrowPeak peaks ENCSR000BJN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens TAF1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF388UBE, ENCFF782VTV 5560828 ENCODE Processing Pipeline 0fc07fb8e80a7b3c915d2f8e7daafab8 https://www.encodeproject.org/files/ENCFF999FLX/@@download/ENCFF999FLX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF680IKB bed narrowPeak peaks ENCSR000BJM ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF292YHA, ENCFF782VTV, ENCFF988KTE 4132059 ENCODE Processing Pipeline 1c8be2ec330283b8ed2fbaa64a3ab22b https://www.encodeproject.org/files/ENCFF680IKB/@@download/ENCFF680IKB.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF435JAM bed narrowPeak peaks ENCSR469POZ ChIP-seq UBERON:0001323 tibial nerve tissue Homo sapiens CTCF-human DNA False 2016-12-08 ENCODE 1 ENCFF900VZW, ENCFF975GAM 6914692 ENCODE Processing Pipeline e833e9698dc5df2dabd14273a537c736 https://www.encodeproject.org/files/ENCFF435JAM/@@download/ENCFF435JAM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF621KLV bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294HHJ, ENCFF750MIM 2505082 ENCODE Processing Pipeline ed746289c113d26f59115ce9fd2bf3fc https://www.encodeproject.org/files/ENCFF621KLV/@@download/ENCFF621KLV.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF001XRN bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HOZ 983398 John Stamatoyannopoulos, UW 91a7ac063cf4a34835f9a8b007904e51 https://www.encodeproject.org/files/ENCFF001XRN/@@download/ENCFF001XRN.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF924YJI bed narrowPeak peaks ENCSR000DUS ChIP-seq CL:0002327 mammary epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF268MTM, ENCFF620RYQ 3732065 ENCODE Processing Pipeline ff075a5e7ab0ae978f67ef3324dac57e https://www.encodeproject.org/files/ENCFF924YJI/@@download/ENCFF924YJI.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms ENCFF521MOS bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM 4142355 ENCODE Processing Pipeline 585df9f882884542d2162608818d81f2 https://www.encodeproject.org/files/ENCFF521MOS/@@download/ENCFF521MOS.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF706QLS bed narrowPeak peaks ENCSR000AKB ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS 2436987 ENCODE Processing Pipeline 989f9f01a47be649827afbe7613f9e79 https://www.encodeproject.org/files/ENCFF706QLS/@@download/ENCFF706QLS.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths control insufficient read depth, insufficient read depth ENCFF001XOY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001HFV 793103 John Stamatoyannopoulos, UW 70e7f4f6dee47ffba8ecb3def8015f2f https://www.encodeproject.org/files/ENCFF001XOY/@@download/ENCFF001XOY.bed.gz hg19 archived control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF380UJY bed narrowPeak peaks ENCSR000DRP ChIP-seq EFO:0001160 GM12873 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF471JZR, ENCFF968YYG 2610991 ENCODE Processing Pipeline 7c3b8151075c83a5570662febe59cd2a https://www.encodeproject.org/files/ENCFF380UJY/@@download/ENCFF380UJY.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity missing raw data in replicate insufficient read depth missing control alignments ENCFF670WGX bed narrowPeak peaks ENCSR000AUS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF020GML, ENCFF727XHW 4556919 ENCODE Processing Pipeline d2b54ef10b0236562a30dc28ba139a0f https://www.encodeproject.org/files/ENCFF670WGX/@@download/ENCFF670WGX.bed.gz hg19 released low read length, inconsistent platforms ENCFF940PJA bed narrowPeak peaks ENCSR000EUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SUZ12-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF295PYU, ENCFF509ANO 4523991 ENCODE Processing Pipeline 7c7f44776efc18b3cd0702090a53d0f0 https://www.encodeproject.org/files/ENCFF940PJA/@@download/ENCFF940PJA.bed.gz hg19 released borderline replicate concordance, low read depth biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF772NOR bed narrowPeak peaks ENCSR000BQZ ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens STAT5A-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF508HCX, ENCFF892ZFJ 6796170 ENCODE Processing Pipeline d2c09786f4febb2bd8af1b893b845f09 https://www.encodeproject.org/files/ENCFF772NOR/@@download/ENCFF772NOR.bed.gz hg19 released low read length, inconsistent platforms biological replicates with identical biosample ENCFF001XMX bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GZV 846025 John Stamatoyannopoulos, UW 945c5c42b7eed394da0967d381ec73ec https://www.encodeproject.org/files/ENCFF001XMX/@@download/ENCFF001XMX.bed.gz hg19 archived moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF450FYB bed narrowPeak peaks ENCSR000DQN ChIP-seq EFO:0001099 Caco-2 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF054SRM, ENCFF610PHZ 3540401 ENCODE Processing Pipeline a6f63c9f563d046e48146a95d85ce651 https://www.encodeproject.org/files/ENCFF450FYB/@@download/ENCFF450FYB.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth insufficient read depth, severe bottlenecking ENCFF496UYK bed narrowPeak peaks ENCSR000BRH ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MTA3-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF420JTZ, ENCFF508HCX 6892196 ENCODE Processing Pipeline 6249aeafbda77ae037a51105225000bc https://www.encodeproject.org/files/ENCFF496UYK/@@download/ENCFF496UYK.bed.gz hg19 released low read length, borderline replicate concordance, inconsistent platforms biological replicates with identical biosample ENCFF287WRJ bed narrowPeak peaks ENCSR000EXL ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens TCF7L2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF022SZB, ENCFF703KFY 5325369 ENCODE Processing Pipeline aec98923b01bcecffa09d803dffb3ec5 https://www.encodeproject.org/files/ENCFF287WRJ/@@download/ENCFF287WRJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms biological replicates with identical biosample ENCFF833TSX bed narrowPeak peaks ENCSR492ZIW ChIP-seq UBERON:0002046 thyroid gland tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF334HAL, ENCFF899IHZ 6509134 ENCODE Processing Pipeline e3812333d1f49ced5c48f4d37d476541 https://www.encodeproject.org/files/ENCFF833TSX/@@download/ENCFF833TSX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF692UFO bed narrowPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF062OKC, ENCFF574XYY 3725047 ENCODE Processing Pipeline 0ddcc3900c596eb90ac5d29d5f721899 https://www.encodeproject.org/files/ENCFF692UFO/@@download/ENCFF692UFO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths missing raw data in replicate insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking ENCFF484KKN bed narrowPeak peaks ENCSR336PTS ChIP-seq NTR:0001226 Parathyroid adenoma tissue Homo sapiens CTCF-human DNA False 2017-12-08 ENCODE 1 ENCFF273CUH, ENCFF638AQQ 5835324 ENCODE Processing Pipeline ad4498a66795a909cdf6783ec83e7f56 https://www.encodeproject.org/files/ENCFF484KKN/@@download/ENCFF484KKN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption NTR biosample, experiment not submitted to GEO unreplicated experiment ENCFF900WDP bed narrowPeak peaks ENCSR822CEA ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens CTCF-human DNA False 2014-07-07 ENCODE 1 ENCFF080XQT, ENCFF380JLB, ENCFF980CFV 6748695 ENCODE Processing Pipeline dfdfe4f30e1f0cbf721b7e1793fa82c0 https://www.encodeproject.org/files/ENCFF900WDP/@@download/ENCFF900WDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF927YRG bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF006UXO, ENCFF750MIM 4623186 ENCODE Processing Pipeline da847f33f2805400c0bc537204cf5d79 https://www.encodeproject.org/files/ENCFF927YRG/@@download/ENCFF927YRG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample control insufficient read depth ENCFF545FAT bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 5201909 ENCODE Processing Pipeline f778df33398231bdd16946eadc00a734 https://www.encodeproject.org/files/ENCFF545FAT/@@download/ENCFF545FAT.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF253DCO bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF942NUX 4597558 ENCODE Processing Pipeline 83ffe6ced3b82d7ee59333110e1fea74 https://www.encodeproject.org/files/ENCFF253DCO/@@download/ENCFF253DCO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment biological replicates with identical biosample ENCFF276DPB bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538JCZ, ENCFF750MIM 2554768 ENCODE Processing Pipeline 713c6ee524388deaf65c14f0ec838440 https://www.encodeproject.org/files/ENCFF276DPB/@@download/ENCFF276DPB.bed.gz hg19 released low read length, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking ENCFF761ORT bed narrowPeak peaks ENCSR696LQU ChIP-seq UBERON:0000992 ovary tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF834AOC 6235660 ENCODE Processing Pipeline 6aade674d7b187f48fb318dd92c2767c https://www.encodeproject.org/files/ENCFF761ORT/@@download/ENCFF761ORT.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF872LIM bed narrowPeak peaks ENCSR770IWO ChIP-seq UBERON:0002369 adrenal gland tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF570ZSH, ENCFF891NAK 6375548 ENCODE Processing Pipeline 098ff0d0ac500604d6bb35c8ef775399 https://www.encodeproject.org/files/ENCFF872LIM/@@download/ENCFF872LIM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF918SQN bed narrowPeak peaks ENCSR000BJT ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF686SSI 4127101 ENCODE Processing Pipeline e703e83a6128f3b4ba73324c275be6e3 https://www.encodeproject.org/files/ENCFF918SQN/@@download/ENCFF918SQN.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample insufficient read depth ENCFF507ZLI bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF002THP, ENCFF498SAC, ENCFF732TLR 5173454 ENCODE Processing Pipeline 8f6f2b56cbac1449b28960c1e518cc38 https://www.encodeproject.org/files/ENCFF507ZLI/@@download/ENCFF507ZLI.bed.gz hg19 released low read length, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF422OZA bed narrowPeak peaks ENCSR888OWU ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2A-human DNA False 2016-12-13 ENCODE 1 ENCFF656OLR, ENCFF664ITJ 6384681 ENCODE Processing Pipeline bf13a5c0cd74b8c9d4fc75aee057b04d https://www.encodeproject.org/files/ENCFF422OZA/@@download/ENCFF422OZA.bed.gz hg19 released antibody characterized with exemption ENCFF004UUL bed narrowPeak peaks ENCSR000ANS ChIP-seq CL:0002372 myotube in vitro differentiated cells Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG 3342896 ENCODE Processing Pipeline bad9ba2a20281ae90ef47badcf4affeb https://www.encodeproject.org/files/ENCFF004UUL/@@download/ENCFF004UUL.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity NTR biosample insufficient read depth missing control alignments ENCFF667ZBS bed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF650RQR 4013435 ENCODE Processing Pipeline de80fc1248efcb8b0603f4c7ab04ce2f https://www.encodeproject.org/files/ENCFF667ZBS/@@download/ENCFF667ZBS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF406GXU bed narrowPeak peaks ENCSR803FAP ChIP-seq UBERON:0000473 testis tissue Homo sapiens POLR2A-human DNA False 2017-01-30 ENCODE 1 ENCFF514TTH, ENCFF576YJV 5561763 ENCODE Processing Pipeline 742eb192e5271788688432c6ca1e5c66 https://www.encodeproject.org/files/ENCFF406GXU/@@download/ENCFF406GXU.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF839MBM bed narrowPeak peaks ENCSR000MMZ ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens EP300-human DNA see document formaldehyde False 2017-06-15 ENCODE 1 ENCFF944EAM 6340677 ENCODE Processing Pipeline 7d50f66aa8886055b0e47d6c02d2352c https://www.encodeproject.org/files/ENCFF839MBM/@@download/ENCFF839MBM.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF077KRK bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF823NIQ 5501529 ENCODE Processing Pipeline 1e02c94c7e82b16b361f512039fdb43a https://www.encodeproject.org/files/ENCFF077KRK/@@download/ENCFF077KRK.bed.gz hg19 released low read length, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF001XLM bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF001GVI 595003 John Stamatoyannopoulos, UW ec0e5a0e816cd54f88a504691ca7db39 https://www.encodeproject.org/files/ENCFF001XLM/@@download/ENCFF001XLM.bed.gz hg19 archived borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF096GLZ bed narrowPeak peaks ENCSR000DPF ChIP-seq EFO:0001086 A549 cell line Homo sapiens CTCF-human DNA see document see document False 2012-01-17 ENCODE 1 ENCFF076ZNH, ENCFF251TYG 1064010 ENCODE Processing Pipeline baeab40cacbef5a56d321a1785ca47c7 https://www.encodeproject.org/files/ENCFF096GLZ/@@download/ENCFF096GLZ.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth poor library complexity, severe bottlenecking extremely low read depth ENCFF081GEA bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF536GLO, ENCFF574XYY 4808755 ENCODE Processing Pipeline 6f68aa14b9f8380db9f70eb8c31d042a https://www.encodeproject.org/files/ENCFF081GEA/@@download/ENCFF081GEA.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth biological replicates with identical biosample, missing raw data in replicate insufficient read depth, poor library complexity, severe bottlenecking ENCFF519QQX bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF788MNU 5120602 ENCODE Processing Pipeline 85d929ad32fc06df986203b6fc53cdcf https://www.encodeproject.org/files/ENCFF519QQX/@@download/ENCFF519QQX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF362UBD bed narrowPeak peaks ENCSR000BOV ChIP-seq EFO:0002713 Panc1 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF065NPZ, ENCFF269DQZ 6553858 ENCODE Processing Pipeline 25a6f2b04ea8bef474f09832a310977c https://www.encodeproject.org/files/ENCFF362UBD/@@download/ENCFF362UBD.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF514HVB bed narrowPeak peaks ENCSR000BSK ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens JUND-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF078LPR, ENCFF436ZGI, ENCFF839BYC 5706459 ENCODE Processing Pipeline c5c1523860d58e101f935ddd201f7736 https://www.encodeproject.org/files/ENCFF514HVB/@@download/ENCFF514HVB.bed.gz hg19 released biological replicates with identical biosample missing control alignments ENCFF233XEO bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF574XYY, ENCFF979MVK 4369803 ENCODE Processing Pipeline c93be7987719bacc0e44acae6a84097b https://www.encodeproject.org/files/ENCFF233XEO/@@download/ENCFF233XEO.bed.gz hg19 released borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth ENCFF123SPG bed narrowPeak peaks ENCSR000ECK ChIP-seq EFO:0002791 HeLa-S3 cell line Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF405VXR, ENCFF469INX 5685175 ENCODE Processing Pipeline 8d86ae5c11dc6fe954a9bda697b56b7e https://www.encodeproject.org/files/ENCFF123SPG/@@download/ENCFF123SPG.bed.gz hg19 released low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, inconsistent mapped reads lengths ENCFF499CWW bed narrowPeak peaks ENCSR000AUZ ChIP-seq CL:0000236 B cell primary cell Homo sapiens EZH2-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF724KQS 5207894 ENCODE Processing Pipeline b923450f64e0d248502de4512fd8b528 https://www.encodeproject.org/files/ENCFF499CWW/@@download/ENCFF499CWW.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity poor library complexity, severe bottlenecking extremely low read depth ENCFF670PLH bed narrowPeak peaks ENCSR000BUW ChIP-seq EFO:0002793 HL-60 cell line Homo sapiens SPI1-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF407WPP, ENCFF822WIL, ENCFF880DIZ 5580846 ENCODE Processing Pipeline 808c31c7fb40747e64618122e7ca6bbc https://www.encodeproject.org/files/ENCFF670PLH/@@download/ENCFF670PLH.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth biological replicates with identical biosample ENCFF035SJF bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF097SZB, ENCFF235CSW, ENCFF750MIM 1679734 ENCODE Processing Pipeline 04bffe0c515af4aa90eeb9bb482f4cd8 https://www.encodeproject.org/files/ENCFF035SJF/@@download/ENCFF035SJF.bed.gz hg19 released low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF003CWL bed narrowPeak peaks ENCSR000EEC ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAFF-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF848DMA 5252403 ENCODE Processing Pipeline 137fd7e28a92f48cf8613e70f19d9350 https://www.encodeproject.org/files/ENCFF003CWL/@@download/ENCFF003CWL.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF716IBZ bed narrowPeak peaks ENCSR000EEI ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens JUND-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF371NBL 5109965 ENCODE Processing Pipeline 0499c1bd1214452c6e422672dbb66a18 https://www.encodeproject.org/files/ENCFF716IBZ/@@download/ENCFF716IBZ.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XTV bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HXH 926574 John Stamatoyannopoulos, UW d8ab7dcdd22ed428a6c1d8cf296dffc5 https://www.encodeproject.org/files/ENCFF001XTV/@@download/ENCFF001XTV.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF359EWI bed narrowPeak peaks ENCSR000DXQ ChIP-seq EFO:0003072 SK-N-SH cell line Homo sapiens all-trans-retinoic acid 6 μM 48 hour CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF328BRW, ENCFF998ZWT 2661982 ENCODE Processing Pipeline 0c8d8b15f79694ccea73ca291bcbd773 https://www.encodeproject.org/files/ENCFF359EWI/@@download/ENCFF359EWI.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth ENCFF791IYQ bed narrowPeak peaks ENCSR000AVA ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CHD7-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF243MTV, ENCFF290WMD, ENCFF727XHW 5711895 ENCODE Processing Pipeline e1509a146bb7ec786360f5f8d99d1ec1 https://www.encodeproject.org/files/ENCFF791IYQ/@@download/ENCFF791IYQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity insufficient replicate concordance ENCFF180QIK bed narrowPeak peaks ENCSR000ATK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens PHF8-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF101FNO, ENCFF243MTV, ENCFF727XHW 5876513 ENCODE Processing Pipeline f89af0194b0ed044010408391e0aa0b2 https://www.encodeproject.org/files/ENCFF180QIK/@@download/ENCFF180QIK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF605LQA bed narrowPeak peaks ENCSR000BIS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF036SLY, ENCFF356DXM 5017529 ENCODE Processing Pipeline 4e064528d8926b37e685fb41aad4e760 https://www.encodeproject.org/files/ENCFF605LQA/@@download/ENCFF605LQA.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF075ZQI bed narrowPeak peaks ENCSR000BPE ChIP-seq EFO:0001086 A549 cell line Homo sapiens ethanol 0.02 percent 1 hour SP1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF309RPK, ENCFF864UEQ 6285587 ENCODE Processing Pipeline 338ed28b922bdea7611995424e4cd1af https://www.encodeproject.org/files/ENCFF075ZQI/@@download/ENCFF075ZQI.bed.gz hg19 released low read length biological replicates with identical biosample ENCFF307TQZ bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700OGN, ENCFF750MIM 128509 ENCODE Processing Pipeline 29ba80eee0d97892a5028bf68567ac0b https://www.encodeproject.org/files/ENCFF307TQZ/@@download/ENCFF307TQZ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF289BEY bed narrowPeak peaks ENCSR000ATQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens HDAC6-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF234GEH, ENCFF727XHW 3633470 ENCODE Processing Pipeline 4d45d12a691e792772b657ef41fe9a31 https://www.encodeproject.org/files/ENCFF289BEY/@@download/ENCFF289BEY.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity ENCFF380YEP bed narrowPeak peaks ENCSR000BKK ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF060WKJ, ENCFF356DXM 3832278 ENCODE Processing Pipeline 3c2e59e388ffc27591fefb08cbf09b45 https://www.encodeproject.org/files/ENCFF380YEP/@@download/ENCFF380YEP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF918SPH bed narrowPeak peaks ENCSR000BHN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF526YGE 6732996 ENCODE Processing Pipeline ca83b13a50c803ada9e8f9ba728c4ff2 https://www.encodeproject.org/files/ENCFF918SPH/@@download/ENCFF918SPH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample missing control alignments ENCFF815LEF bed narrowPeak peaks ENCSR000BNG ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens MEF2C-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF195HFC, ENCFF963CVB 2732112 ENCODE Processing Pipeline 4fd3d4b814f88379c810cb3453838ba8 https://www.encodeproject.org/files/ENCFF815LEF/@@download/ENCFF815LEF.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth, insufficient replicate concordance ENCFF152JEO bed narrowPeak peaks ENCSR000BPL ChIP-seq EFO:0002860 SK-N-MC cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF691TYS, ENCFF863QPG 6416592 ENCODE Processing Pipeline 50347953b53bde9e7a6c7f21c2092984 https://www.encodeproject.org/files/ENCFF152JEO/@@download/ENCFF152JEO.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance biological replicates with identical biosample ENCFF953BDX bed narrowPeak peaks ENCSR000BPX ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour FOXA1-human DNA see document see document False 2012-02-29 ENCODE 1 ENCFF288LFN, ENCFF336HSE, ENCFF879AJU 4385160 ENCODE Processing Pipeline 8bf42a4751560997619f11832667ba1f https://www.encodeproject.org/files/ENCFF953BDX/@@download/ENCFF953BDX.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XRR bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HPN 730930 John Stamatoyannopoulos, UW bb19ea2d1c5d3eb8f361cfed950e06e3 https://www.encodeproject.org/files/ENCFF001XRR/@@download/ENCFF001XRR.bed.gz hg19 archived low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF090XCI bed narrowPeak peaks ENCSR000DUU ChIP-seq CL:0002555 fibroblast of mammary gland primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF318TMO, ENCFF628PKL 2393589 ENCODE Processing Pipeline 1e2e1827152f9524fa34f6dc40eb8e63 https://www.encodeproject.org/files/ENCFF090XCI/@@download/ENCFF090XCI.bed.gz hg19 released low read length, low read depth, inconsistent platforms control insufficient read depth, insufficient read depth ENCFF377LKC bed narrowPeak peaks ENCSR784VUY ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens RNF2-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF493YQC, ENCFF727XHW 6652352 ENCODE Processing Pipeline 882e2b68361a10f4be5370cb66bc15bc https://www.encodeproject.org/files/ENCFF377LKC/@@download/ENCFF377LKC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, antibody characterized with exemption experiment not submitted to GEO insufficient read depth, poor library complexity, severe bottlenecking missing control alignments ENCFF784FBR bed narrowPeak peaks ENCSR000EUN ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens ZNF274-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF123NKL, ENCFF509ANO 1025365 ENCODE Processing Pipeline 9c425ec8d5a70be9f50709f48982add5 https://www.encodeproject.org/files/ENCFF784FBR/@@download/ENCFF784FBR.bed.gz hg19 released low read length, borderline replicate concordance biological replicates with identical biosample extremely low read depth ENCFF412YTK bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF859KGS 4043931 ENCODE Processing Pipeline d6b3c6ecd2f902f4c5f59525622b62da https://www.encodeproject.org/files/ENCFF412YTK/@@download/ENCFF412YTK.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF813QDL bed narrowPeak peaks ENCSR000BTW ChIP-seq CL:0002319 neural cell in vitro differentiated cells Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF549XKN, ENCFF638ZDZ, ENCFF712GSG 6690166 ENCODE Processing Pipeline efbfbc0674eba9f54bf91b7305c189f4 https://www.encodeproject.org/files/ENCFF813QDL/@@download/ENCFF813QDL.bed.gz hg19 released biological replicates with identical biosample ENCFF061TTI bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF990JRT 4134004 ENCODE Processing Pipeline 460d8efe582bd8ac3d839aaaa1cb871e https://www.encodeproject.org/files/ENCFF061TTI/@@download/ENCFF061TTI.bed.gz hg19 released biological replicates with identical biosample insufficient read depth, insufficient replicate concordance, insufficient read length ENCFF718URH bed narrowPeak peaks ENCSR000BIC ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF356DXM, ENCFF720NFF 6464351 ENCODE Processing Pipeline 41b95c7e11d006b7962873e1e125fd4c https://www.encodeproject.org/files/ENCFF718URH/@@download/ENCFF718URH.bed.gz hg19 released low read length, low read depth biological replicates with identical biosample ENCFF485ZSI bed narrowPeak peaks ENCSR000AUV ChIP-seq CL:0000236 B cell primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF248YTS, ENCFF520GVQ 5468945 ENCODE Processing Pipeline e8a1f5c43574d77028d65bead41854c9 https://www.encodeproject.org/files/ENCFF485ZSI/@@download/ENCFF485ZSI.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity missing raw data in replicate missing control alignments ENCFF097DFJ bed narrowPeak peaks ENCSR000ATN ChIP-seq CL:0001054 CD14-positive monocyte primary cell Homo sapiens CTCF-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF572RFU, ENCFF730IJS, ENCFF853XVP 2633014 ENCODE Processing Pipeline ac010eb0b01e37f4288fdbe332b30fa6 https://www.encodeproject.org/files/ENCFF097DFJ/@@download/ENCFF097DFJ.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity insufficient read depth ENCFF480FHG bed narrowPeak peaks ENCSR000AUQ ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens EP300-human DNA see document see document False 2012-08-06 ENCODE 1 ENCFF727XHW, ENCFF832OFG 4055087 ENCODE Processing Pipeline 9b475cd500f3586135d391fc2a278313 https://www.encodeproject.org/files/ENCFF480FHG/@@download/ENCFF480FHG.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms ENCFF649WCV bed narrowPeak peaks ENCSR981CID ChIP-seq UBERON:0000473 testis tissue Homo sapiens CTCF-human DNA False 2017-01-30 ENCODE 1 ENCFF029BUR, ENCFF576YJV 5941629 ENCODE Processing Pipeline 030c1c00e909666d29987d7f17faa26c https://www.encodeproject.org/files/ENCFF649WCV/@@download/ENCFF649WCV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF001XSD bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HQY 782666 John Stamatoyannopoulos, UW fd1021882893908aa292899d6bc06f46 https://www.encodeproject.org/files/ENCFF001XSD/@@download/ENCFF001XSD.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF444ZJW bed narrowPeak peaks ENCSR000DVH ChIP-seq CL:0002518 kidney epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF213ZXO, ENCFF370MLP 2184424 ENCODE Processing Pipeline e1c31d15c3d4b204e1c3dbc6c6351d53 https://www.encodeproject.org/files/ENCFF444ZJW/@@download/ENCFF444ZJW.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, poor library complexity, severe bottlenecking ENCFF919QSI bed narrowPeak peaks ENCSR000EDT ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens BHLHE40-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF107SKX, ENCFF256CVD 5078437 ENCODE Processing Pipeline 4c01119470290b7b1b4610347ffd4918 https://www.encodeproject.org/files/ENCFF919QSI/@@download/ENCFF919QSI.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment duplicate lane review, biological replicates with identical biosample ENCFF237NQY bed narrowPeak peaks ENCSR493APD ChIP-seq UBERON:0000992 ovary tissue Homo sapiens CTCF-human DNA False 2016-12-13 ENCODE 1 ENCFF792NXA, ENCFF947XNG 6388761 ENCODE Processing Pipeline 47941d70f95744de2f455d8fed7735ef https://www.encodeproject.org/files/ENCFF237NQY/@@download/ENCFF237NQY.bed.gz hg19 released antibody characterized with exemption ENCFF897HUQ bed narrowPeak peaks ENCSR160ZLP ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens KDM5A-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF793DEX 5424455 ENCODE Processing Pipeline 67bfad6c8803d1c58ab2404ee1e4c5a9 https://www.encodeproject.org/files/ENCFF897HUQ/@@download/ENCFF897HUQ.bed.gz hg19 released low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths experiment not submitted to GEO ENCFF579SVE bed narrowPeak peaks ENCSR000ANO ChIP-seq CL:0002553 fibroblast of lung primary cell Homo sapiens CTCF-human DNA see document see document False 2011-02-10 ENCODE 1 ENCFF208SHP, ENCFF211UGH, ENCFF250VFW 3874222 ENCODE Processing Pipeline 31eaaf5802f05cec71cf2321a2ddbcfb https://www.encodeproject.org/files/ENCFF579SVE/@@download/ENCFF579SVE.bed.gz hg19 released control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance poor library complexity, severe bottlenecking extremely low read depth, missing control alignments ENCFF001XTQ bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HWO 764075 John Stamatoyannopoulos, UW 5477edaaa4ae7c17ab6288a99066c007 https://www.encodeproject.org/files/ENCFF001XTQ/@@download/ENCFF001XTQ.bed.gz hg19 archived control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF453SOO bed narrowPeak peaks ENCSR000DXI ChIP-seq CL:0002328 bronchial epithelial cell primary cell Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF727MWW, ENCFF863LNN 1882219 ENCODE Processing Pipeline 9c8669e6872848a21b9b0c96662e1955 https://www.encodeproject.org/files/ENCFF453SOO/@@download/ENCFF453SOO.bed.gz hg19 released control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity insufficient read depth, severe bottlenecking extremely low read depth ENCFF629JIS bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF574XYY, ENCFF968GEX 6530562 ENCODE Processing Pipeline 5fddb2dafc4ceb20398de06505d31d68 https://www.encodeproject.org/files/ENCFF629JIS/@@download/ENCFF629JIS.bed.gz hg19 released moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth missing raw data in replicate insufficient replicate concordance ENCFF185AVK bed narrowPeak peaks ENCSR000BHF ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 50 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF492RDK, ENCFF500MOX 4595006 ENCODE Processing Pipeline a9bb763fae506572bd205f2466ddda1e https://www.encodeproject.org/files/ENCFF185AVK/@@download/ENCFF185AVK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample ENCFF001XLV bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001GWJ 794416 John Stamatoyannopoulos, UW 3c6b5bf3eefc28b6bab4ef37916011a1 https://www.encodeproject.org/files/ENCFF001XLV/@@download/ENCFF001XLV.bed.gz hg19 archived control low read depth, low read length, low read depth, inconsistent platforms ENCFF121QUN bed narrowPeak peaks ENCSR000DPM ChIP-seq EFO:0006270 AG04450 cell line Homo sapiens CTCF-human DNA see document see document False 2011-03-17 ENCODE 1 ENCFF316KUR, ENCFF864XXG 4166313 ENCODE Processing Pipeline 52a2e3ee1050673d3f3449527d0d40ad https://www.encodeproject.org/files/ENCFF121QUN/@@download/ENCFF121QUN.bed.gz hg19 released control low read depth, low read length, low read depth, inconsistent platforms ENCFF671DTY bed narrowPeak peaks ENCSR000EBS ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens MAFK-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF590SUW, ENCFF599MVB 4652035 ENCODE Processing Pipeline 369e2d41cec1c265a2179f6de18d7515 https://www.encodeproject.org/files/ENCFF671DTY/@@download/ENCFF671DTY.bed.gz hg19 released file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment biological replicates with identical biosample, mismatched file status ENCFF638TWN bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154ZWB, ENCFF750MIM 90874 ENCODE Processing Pipeline c715cc4d1528dbbe6f962990cf69f86a https://www.encodeproject.org/files/ENCFF638TWN/@@download/ENCFF638TWN.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient replicate concordance ENCFF601TVP bed narrowPeak peaks ENCSR000EXZ ChIP-seq EFO:0002717 SH-SY5Y cell line Homo sapiens GATA3-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF610BER, ENCFF673XHO 5912551 ENCODE Processing Pipeline ea1611741594dfc77aba448abcf46d25 https://www.encodeproject.org/files/ENCFF601TVP/@@download/ENCFF601TVP.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, moderate library complexity biological replicates with identical biosample ENCFF543QDS bed narrowPeak peaks ENCSR000BIA ChIP-seq EFO:0002786 GM12892 cell line Homo sapiens POLR2AphosphoS5-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF267TLE, ENCFF671VNQ 6083883 ENCODE Processing Pipeline 7fcc09f4a892823e19ab94a20f075c45 https://www.encodeproject.org/files/ENCFF543QDS/@@download/ENCFF543QDS.bed.gz hg19 released control low read depth, low read length, low read depth biological replicates with identical biosample ENCFF155OWJ bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human DNA see document see document False 2011-10-29 ENCODE 1 ENCFF364YIH, ENCFF732TLR 5210342 ENCODE Processing Pipeline dc2afec691eb3571ae809e637ff3341e https://www.encodeproject.org/files/ENCFF155OWJ/@@download/ENCFF155OWJ.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth, insufficient read length ENCFF526YXC bed narrowPeak peaks ENCSR000BKY ChIP-seq EFO:0001247 T47D cell line Homo sapiens dimethyl sulfoxide 0.02 percent 1 hour FOXA1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF185XXN, ENCFF960JYT 4813020 ENCODE Processing Pipeline de933f76118b9bf70b5e7569dfc291c9 https://www.encodeproject.org/files/ENCFF526YXC/@@download/ENCFF526YXC.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF507DHS bed narrowPeak peaks ENCSR986QAR ChIP-seq UBERON:0008952 upper lobe of left lung tissue Homo sapiens POLR2AphosphoS5-human DNA see document formaldehyde False 2017-10-31 ENCODE 1 ENCFF391IJU, ENCFF578NQW 6794648 ENCODE Processing Pipeline 38db9bbbc16293889d2c09faad4f18f2 https://www.encodeproject.org/files/ENCFF507DHS/@@download/ENCFF507DHS.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF969CUT bed narrowPeak peaks ENCSR000EDN ChIP-seq EFO:0001187 HepG2 cell line Homo sapiens MAZ-human DNA see document see document False 2012-05-14 ENCODE 1 ENCFF107SKX, ENCFF693CAN 5328984 ENCODE Processing Pipeline c37c04dcf9abd8d974cc46f824cba538 https://www.encodeproject.org/files/ENCFF969CUT/@@download/ENCFF969CUT.bed.gz hg19 released borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth biological replicates with identical biosample ENCFF253OOR bed narrowPeak peaks ENCSR000DYR ChIP-seq EFO:0002784 GM12878 cell line Homo sapiens CUX1-human DNA see document see document False 2012-08-20 ENCODE 1 ENCFF110OHA, ENCFF545DZO, ENCFF546JQP 186581 ENCODE Processing Pipeline c051a2082c2cebef6f097c085ba97220 https://www.encodeproject.org/files/ENCFF253OOR/@@download/ENCFF253OOR.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient replicate concordance ENCFF021NMZ bed narrowPeak peaks ENCSR000BSE ChIP-seq EFO:0002824 HCT116 cell line Homo sapiens CTCF-human DNA see document see document False 2012-09-10 ENCODE 1 ENCFF296CPJ, ENCFF831FMU 2565552 ENCODE Processing Pipeline 98f67bb8cf3d192bc3750f98903272a1 https://www.encodeproject.org/files/ENCFF021NMZ/@@download/ENCFF021NMZ.bed.gz hg19 released mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity biological replicates with identical biosample insufficient read depth missing control alignments ENCFF033RSK bed narrowPeak peaks ENCSR000BJR ChIP-seq EFO:0001086 A549 cell line Homo sapiens dexamethasone 100 nM 1 hour NR3C1-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF579FIX, ENCFF642SKG, ENCFF901AZD 3506599 ENCODE Processing Pipeline d1ed86c6b4b54e36d8892c9e10e5d188 https://www.encodeproject.org/files/ENCFF033RSK/@@download/ENCFF033RSK.bed.gz hg19 released low read length, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read depth ENCFF535NEK bed narrowPeak peaks ENCSR814KIO ChIP-seq EFO:0003042 H1-hESC stem cell Homo sapiens CBX5-human DNA False 2016-12-06 ENCODE 1 ENCFF243MTV, ENCFF727XHW, ENCFF746UGW 5898157 ENCODE Processing Pipeline a580a16f4aab89b519066b1754aba149 https://www.encodeproject.org/files/ENCFF535NEK/@@download/ENCFF535NEK.bed.gz hg19 released low read length, low read depth, antibody characterized with exemption experiment not submitted to GEO ENCFF015HEH bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human DNA see document see document False 2011-07-18 ENCODE 1 ENCFF747HGM, ENCFF750MIM 4316404 ENCODE Processing Pipeline 8207f76f290825f56931668fde6dc792 https://www.encodeproject.org/files/ENCFF015HEH/@@download/ENCFF015HEH.bed.gz hg19 released low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF354MGW bed narrowPeak peaks ENCSR798NVH ChIP-seq UBERON:0000995 uterus tissue Homo sapiens CTCF-human DNA False 2016-11-07 ENCODE 1 ENCFF123STP, ENCFF584NWF 6501029 ENCODE Processing Pipeline 6b428241ad0dc646a3bfb9cd576c1e36 https://www.encodeproject.org/files/ENCFF354MGW/@@download/ENCFF354MGW.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption ENCFF238FUX bed narrowPeak peaks ENCSR999QVR ChIP-seq UBERON:0000995 uterus tissue Homo sapiens POLR2A-human DNA False 2016-11-07 ENCODE 1 ENCFF584NWF, ENCFF811AZL 6230056 ENCODE Processing Pipeline 96deeec52f58dd83ad3ff9d1ba91e044 https://www.encodeproject.org/files/ENCFF238FUX/@@download/ENCFF238FUX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption