ENCFF312EZM	bed narrowPeak	peaks	ENCSR494TDU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NRF1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF581ZJL, ENCFF882JOI	6719059	ENCODE Processing Pipeline	71a739dae92c5ca03408ff454f3888de		https://www.encodeproject.org/files/ENCFF312EZM/@@download/ENCFF312EZM.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF363FXM	bed narrowPeak	peaks	ENCSR654CQU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SNIP1-human	DNA					False	2017-06-23	ENCODE				1							ENCFF079ISN, ENCFF581ZJL	6046627	ENCODE Processing Pipeline	668b680c249969f3157acbe573a4627e		https://www.encodeproject.org/files/ENCFF363FXM/@@download/ENCFF363FXM.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF007YBE	bed narrowPeak	peaks	ENCSR348JOJ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MTA1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF049MPQ, ENCFF061KWB, ENCFF583FAG	6563632	ENCODE Processing Pipeline	ad014830373e820bb80a858b76bc0a3b		https://www.encodeproject.org/files/ENCFF007YBE/@@download/ENCFF007YBE.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF856FKS	bed narrowPeak	peaks	ENCSR756KRS	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF595PUD, ENCFF936JKF	5771661	ENCODE Processing Pipeline	808715f13a98f4f910cdb02c9dd57904		https://www.encodeproject.org/files/ENCFF856FKS/@@download/ENCFF856FKS.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF730SMH	bed narrowPeak	peaks	ENCSR228ZPZ	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF408OZV	6134577	ENCODE Processing Pipeline	6712d118be7895dc696877572c87883d		https://www.encodeproject.org/files/ENCFF730SMH/@@download/ENCFF730SMH.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF710KBI	bed narrowPeak	peaks	ENCSR117WTM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-ZNF24-human	DNA					False	2016-03-02	ENCODE				1							ENCFF099DHX, ENCFF807NZJ	6603746	ENCODE Processing Pipeline	5c96a10199f866ef8d8ff81060efc315		https://www.encodeproject.org/files/ENCFF710KBI/@@download/ENCFF710KBI.bed.gz	hg19			released	low read depth, missing genetic modification characterization			
ENCFF870JMX	bed narrowPeak	peaks	ENCSR744WOO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TCF12-human	DNA					False	2016-10-24	ENCODE				1							ENCFF581ZJL, ENCFF795XNL	6627135	ENCODE Processing Pipeline	1936337eec37b48544e0fc591363ca1b		https://www.encodeproject.org/files/ENCFF870JMX/@@download/ENCFF870JMX.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF576LKG	bed narrowPeak	peaks	ENCSR846TPT	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF632PPF	5428091	ENCODE Processing Pipeline	0b375c428c70248420bd909825e93196		https://www.encodeproject.org/files/ENCFF576LKG/@@download/ENCFF576LKG.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF830SMA	bed narrowPeak	peaks	ENCSR550HCT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-KLF1-human	DNA					False	2016-01-14	ENCODE				1							ENCFF675KUA, ENCFF929AIJ	6484837	ENCODE Processing Pipeline	9f337526edf3461d6521791dee0f24c5		https://www.encodeproject.org/files/ENCFF830SMA/@@download/ENCFF830SMA.bed.gz	hg19			released	missing genetic modification characterization	missing mapped reads lengths		
ENCFF674FOQ	bed narrowPeak	peaks	ENCSR657EOF	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFRKB-human	DNA					False	2016-06-14	ENCODE				1							ENCFF239DXH, ENCFF581ZJL	6613524	ENCODE Processing Pipeline	68b5c4aee6f13205eba0cc76e6b34593		https://www.encodeproject.org/files/ENCFF674FOQ/@@download/ENCFF674FOQ.bed.gz	hg19			released	low read depth			
ENCFF432JWQ	bed narrowPeak	peaks	ENCSR117KWH	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF207-human	DNA					False	2014-07-07	ENCODE				1							ENCFF571DSD, ENCFF941TZZ	6777932	ENCODE Processing Pipeline	b76707c57c3f129259925cd947b1f208		https://www.encodeproject.org/files/ENCFF432JWQ/@@download/ENCFF432JWQ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF199PBO	bed narrowPeak	peaks	ENCSR720HUL	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				E2F1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF160VXC, ENCFF911AAQ	6463924	ENCODE Processing Pipeline	c12f8fc6733ef74ba731a112632d4e12		https://www.encodeproject.org/files/ENCFF199PBO/@@download/ENCFF199PBO.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	experiment not submitted to GEO	poor library complexity, severe bottlenecking, partially characterized antibody	
ENCFF279POO	bed narrowPeak	peaks	ENCSR222SQE	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF590YRR, ENCFF882RAK	7170449	ENCODE Processing Pipeline	49b0fde64fd93714da5d66d6bf53f219		https://www.encodeproject.org/files/ENCFF279POO/@@download/ENCFF279POO.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF230IDW	bed narrowPeak	peaks	ENCSR661NXJ	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-10-25	ENCODE				1							ENCFF021JJL, ENCFF919PUP	6734617	ENCODE Processing Pipeline	4894bdd4a9bce3552cb6a0c1123fb0be		https://www.encodeproject.org/files/ENCFF230IDW/@@download/ENCFF230IDW.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF088TUO	bed narrowPeak	peaks	ENCSR558HTE	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF263IJB, ENCFF570YAA	4655953	ENCODE Processing Pipeline	e5c8b9aff0b2a9efeacc424525f999b2		https://www.encodeproject.org/files/ENCFF088TUO/@@download/ENCFF088TUO.bed.gz	hg19			released	control low read depth, low read depth, antibody characterized with exemption			
ENCFF913GNW	bed narrowPeak	peaks	ENCSR429JTR	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF726KOK	5526232	ENCODE Processing Pipeline	30e19fa28b5af368754c5bc6f9a9905e		https://www.encodeproject.org/files/ENCFF913GNW/@@download/ENCFF913GNW.bed.gz	hg19			released	low read depth, antibody characterized with exemption			missing control alignments
ENCFF618NMD	bed narrowPeak	peaks	ENCSR769WKR	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-08	ENCODE				1							ENCFF267XAF, ENCFF972JKW	5609470	ENCODE Processing Pipeline	749bb05ad9a11d370a9568a6d71ca03a		https://www.encodeproject.org/files/ENCFF618NMD/@@download/ENCFF618NMD.bed.gz	hg19			released	control low read depth, low read depth, antibody characterized with exemption			
ENCFF350LWS	bed narrowPeak	peaks	ENCSR192AFN	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				PAX8-human	DNA					False	2017-11-30	ENCODE				1							ENCFF400NRC, ENCFF592WAL	6593975	ENCODE Processing Pipeline	5d042bfd10651e0eaa3f9752367e2e13		https://www.encodeproject.org/files/ENCFF350LWS/@@download/ENCFF350LWS.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	experiment not submitted to GEO		
ENCFF371FPA	bed narrowPeak	peaks	ENCSR949IWY	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				PAX8-human	DNA					False	2017-05-17	ENCODE				1							ENCFF447KVS, ENCFF667QTL, ENCFF823USR	6696970	ENCODE Processing Pipeline	f909c228192449508da5c67159b40045		https://www.encodeproject.org/files/ENCFF371FPA/@@download/ENCFF371FPA.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF609XUG	bed narrowPeak	peaks	ENCSR677FYM	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF630UCU	4845814	ENCODE Processing Pipeline	d0aee8a8266310980417af38dbdde8f9		https://www.encodeproject.org/files/ENCFF609XUG/@@download/ENCFF609XUG.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			missing control alignments
ENCFF010BAD	bed narrowPeak	peaks	ENCSR038FOS	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF419SAO, ENCFF905DKC	4479586	ENCODE Processing Pipeline	3935b26910c7d2eca43ec8bf0f29a22f		https://www.encodeproject.org/files/ENCFF010BAD/@@download/ENCFF010BAD.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF501DZY	bed narrowPeak	peaks	ENCSR113LAS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MTA2-human	DNA					False	2016-06-14	ENCODE				1							ENCFF568FRV, ENCFF581ZJL	6216671	ENCODE Processing Pipeline	930752e7e889e06e0e3a436fa59bb5ef		https://www.encodeproject.org/files/ENCFF501DZY/@@download/ENCFF501DZY.bed.gz	hg19			released	low read depth			
ENCFF620DNX	bed narrowPeak	peaks	ENCSR102CSD	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-10-25	ENCODE				1							ENCFF051HDO, ENCFF908GSJ	6836392	ENCODE Processing Pipeline	8da83cc93e5aa7b42fc58f8a6577596a		https://www.encodeproject.org/files/ENCFF620DNX/@@download/ENCFF620DNX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF263MQY	bed narrowPeak	peaks	ENCSR028UIU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ATF3-human	DNA					False	2016-07-08	ENCODE				1							ENCFF160VXC, ENCFF478OFO	7015651	ENCODE Processing Pipeline	9dafa63525ad4fba374d03ff634f5cdd		https://www.encodeproject.org/files/ENCFF263MQY/@@download/ENCFF263MQY.bed.gz	hg19			released	mild to moderate bottlenecking, inconsistent platforms, moderate library complexity	experiment not submitted to GEO		
ENCFF588ZYR	bed narrowPeak	peaks	ENCSR863KUB	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TCF7-human	DNA					False	2016-01-14	ENCODE				1							ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC	6374559	ENCODE Processing Pipeline	c33c3673740b566fbda54f4be7e1c3de		https://www.encodeproject.org/files/ENCFF588ZYR/@@download/ENCFF588ZYR.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			missing control alignments
ENCFF779QTR	bed narrowPeak	peaks	ENCSR899JSO	ChIP-seq	UBERON:0002369	adrenal gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF282SQP, ENCFF745BKE	6480153	ENCODE Processing Pipeline	439031ea4ee45d2a7377621e80087599		https://www.encodeproject.org/files/ENCFF779QTR/@@download/ENCFF779QTR.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF172UOB	bed narrowPeak	peaks	ENCSR041XML	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SRF-human	DNA					False	2018-01-26	ENCODE				1							ENCFF245PXJ, ENCFF592WAL	6178196	ENCODE Processing Pipeline	4426a4ea966e640b31b13fc2e2836553		https://www.encodeproject.org/files/ENCFF172UOB/@@download/ENCFF172UOB.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	experiment not submitted to GEO	partially characterized antibody	
ENCFF351DKB	bed narrowPeak	peaks	ENCSR796ITY	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFIC-human	DNA					False	2017-05-17	ENCODE				1							ENCFF160VXC, ENCFF822VWX, ENCFF834TUP	7258939	ENCODE Processing Pipeline	96bc24b8a37c141356d2d757d60d26ec		https://www.encodeproject.org/files/ENCFF351DKB/@@download/ENCFF351DKB.bed.gz	hg19			released	mild to moderate bottlenecking, inconsistent platforms			
ENCFF133EYO	bed narrowPeak	peaks	ENCSR953DVM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				E2F8-human	DNA					False	2018-01-26	ENCODE				1							ENCFF019NMV, ENCFF581ZJL	6905870	ENCODE Processing Pipeline	593a7b157fdd9fe7c6683d3eb14892e2		https://www.encodeproject.org/files/ENCFF133EYO/@@download/ENCFF133EYO.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF241QBV	bed narrowPeak	peaks	ENCSR975SSR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-ELF1-human	DNA					False	2016-06-13	ENCODE				1							ENCFF775ZRK, ENCFF891YJS	6254539	ENCODE Processing Pipeline	c7fb7fb7e8669a0f4968aeb0331a514c		https://www.encodeproject.org/files/ENCFF241QBV/@@download/ENCFF241QBV.bed.gz	hg19			released	missing genetic modification characterization			
ENCFF165OLG	bed narrowPeak	peaks	ENCSR948VFL	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				IKZF1-human	DNA					False	2016-10-11	ENCODE				1							ENCFF561GSY, ENCFF581ZJL	7194804	ENCODE Processing Pipeline	3ee7173d67a0ae3c64c577669ba2e544		https://www.encodeproject.org/files/ENCFF165OLG/@@download/ENCFF165OLG.bed.gz	hg19			released				
ENCFF086YFF	bed narrowPeak	peaks	ENCSR382MOM	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				YY1-human	DNA					False	2016-03-31	ENCODE				1							ENCFF430WBQ, ENCFF871NUZ	6419348	ENCODE Processing Pipeline	f19df16c5a6e5229aab8f0c4954f97a1		https://www.encodeproject.org/files/ENCFF086YFF/@@download/ENCFF086YFF.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF606MZK	bed narrowPeak	peaks	ENCSR837EYC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NRF1-human	DNA					False	2016-06-16	ENCODE				1							ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ	5843860	ENCODE Processing Pipeline	951c843562da6d636f7e4f4647195342		https://www.encodeproject.org/files/ENCFF606MZK/@@download/ENCFF606MZK.bed.gz	hg19			released	low read depth, moderate library complexity			
ENCFF617HUR	bed narrowPeak	peaks	ENCSR338MMB	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				NR2F2-human	DNA					False	2016-08-24	ENCODE				1							ENCFF192MTR, ENCFF200LFK, ENCFF321UJV	6221045	ENCODE Processing Pipeline	9f26e32201c2110c70ee688f83fbc51b		https://www.encodeproject.org/files/ENCFF617HUR/@@download/ENCFF617HUR.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF136ODS	bed narrowPeak	peaks	ENCSR848YWD	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZMYM3-human	DNA					False	2016-09-23	ENCODE				1							ENCFF844NZR, ENCFF929OSU	5964046	ENCODE Processing Pipeline	be3f58a9c5d39356def9ef240208e6e5		https://www.encodeproject.org/files/ENCFF136ODS/@@download/ENCFF136ODS.bed.gz	hg19			released	low read depth, antibody characterized with exemption, mixed read lengths			
ENCFF436LYU	bed narrowPeak	peaks	ENCSR853ADA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NRF1-human	DNA					False	2016-06-13	ENCODE				1							ENCFF108FPL, ENCFF213IBE, ENCFF850ZDJ	5709650	ENCODE Processing Pipeline	6b343ead7d115e6b752ee6c132f97a7f		https://www.encodeproject.org/files/ENCFF436LYU/@@download/ENCFF436LYU.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF191KTX	bed narrowPeak	peaks	ENCSR390VGH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MNT-human	DNA					False	2017-01-27	ENCODE				1							ENCFF160VXC, ENCFF899ORC	6850176	ENCODE Processing Pipeline	d6d781cc28f8d5798a2b30c9215d71be		https://www.encodeproject.org/files/ENCFF191KTX/@@download/ENCFF191KTX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF747PUI	bed narrowPeak	peaks	ENCSR955BIB	ChIP-seq	UBERON:0002046	thyroid gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF300XKS, ENCFF336YLG	6466857	ENCODE Processing Pipeline	cffd4c21e3adb5a3b1c38609954c2b86		https://www.encodeproject.org/files/ENCFF747PUI/@@download/ENCFF747PUI.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF173TPC	bed narrowPeak	peaks	ENCSR252XWG	ChIP-seq	UBERON:0004264	lower leg skin	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF191LEP, ENCFF546PNW	6259235	ENCODE Processing Pipeline	e513594478f6683c4ed945a918cd417a		https://www.encodeproject.org/files/ENCFF173TPC/@@download/ENCFF173TPC.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF613ONR	bed narrowPeak	peaks	ENCSR231YFE	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZBTB33-human	DNA					False	2016-11-17	ENCODE				1							ENCFF583FAG, ENCFF973SCA	5581607	ENCODE Processing Pipeline	6090cd15d03b360d1d73e80487525780		https://www.encodeproject.org/files/ENCFF613ONR/@@download/ENCFF613ONR.bed.gz	hg19			released	borderline replicate concordance			
ENCFF512ZVD	bed narrowPeak	peaks	ENCSR006WUS	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NEUROD1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF507XLD, ENCFF583FAG	6419709	ENCODE Processing Pipeline	e5228703456608c4e83bc33db9424352		https://www.encodeproject.org/files/ENCFF512ZVD/@@download/ENCFF512ZVD.bed.gz	hg19			released	borderline replicate concordance, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF029FHZ	bed narrowPeak	peaks	ENCSR903ELW	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				CREM-human	DNA					False	2016-08-24	ENCODE				1							ENCFF108FPL, ENCFF322CDL, ENCFF969DYI	6550732	ENCODE Processing Pipeline	5eb05c692477dab690944ae9c11ba30e		https://www.encodeproject.org/files/ENCFF029FHZ/@@download/ENCFF029FHZ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF800RTH	bed narrowPeak	peaks	ENCSR635OSG	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				RAD21-human	DNA					False	2017-04-14	ENCODE				1							ENCFF498EIA, ENCFF631FAS, ENCFF825RNP	4753523	ENCODE Processing Pipeline	0a46fef5ed8a49e0b755e7e6483fce5c		https://www.encodeproject.org/files/ENCFF800RTH/@@download/ENCFF800RTH.bed.gz	hg19			released	low read length, antibody characterized with exemption, inconsistent target of control experiment	experiment not submitted to GEO	missing input control	
ENCFF877QMQ	bed narrowPeak	peaks	ENCSR692ILH	ChIP-seq	UBERON:0002106	spleen	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF370DPP, ENCFF403WUZ	6430493	ENCODE Processing Pipeline	cbce1ae827e70b00ddb3b8346d602677		https://www.encodeproject.org/files/ENCFF877QMQ/@@download/ENCFF877QMQ.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF142PDO	bed narrowPeak	peaks	ENCSR776AEL	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF080WMH, ENCFF880RWA	3956703	ENCODE Processing Pipeline	41b35e5618e558377cb578e258e6e7a7		https://www.encodeproject.org/files/ENCFF142PDO/@@download/ENCFF142PDO.bed.gz	hg19			released	control low read depth, antibody characterized with exemption			
ENCFF846YGT	bed narrowPeak	peaks	ENCSR917QNE	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				RAD21-human	DNA					False	2016-10-12	ENCODE				1							ENCFF200LFK, ENCFF231NPN, ENCFF235CCD	6917938	ENCODE Processing Pipeline	da9ca8dbb874b2b094e90ef812bee635		https://www.encodeproject.org/files/ENCFF846YGT/@@download/ENCFF846YGT.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF607MHD	bed narrowPeak	peaks	ENCSR634ZGP	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				UBTF-human	DNA					False	2016-07-28	ENCODE				1							ENCFF008CNQ, ENCFF132FAW	5768302	ENCODE Processing Pipeline	9eb4aaa343e9f803ba88697c46b66aea		https://www.encodeproject.org/files/ENCFF607MHD/@@download/ENCFF607MHD.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity			
ENCFF063GQS	bed narrowPeak	peaks	ENCSR196HGZ	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				JUND-human	DNA					False	2016-06-30	ENCODE				1							ENCFF654EHF, ENCFF763BJA, ENCFF991UTU	6364179	ENCODE Processing Pipeline	73c9e6ffd398f7b1525634dbeab99bbf		https://www.encodeproject.org/files/ENCFF063GQS/@@download/ENCFF063GQS.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF720BVJ	bed narrowPeak	peaks	ENCSR695EQB	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF24-human	DNA					False	2017-01-27	ENCODE				1							ENCFF057NCM, ENCFF581ZJL	7096882	ENCODE Processing Pipeline	5642da1c0113cedbfd494e26d8fe70cc		https://www.encodeproject.org/files/ENCFF720BVJ/@@download/ENCFF720BVJ.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF381BVK	bed narrowPeak	peaks	ENCSR094ZCF	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				eGFP-CEBPG-human	DNA					False	2016-06-13	ENCODE				1							ENCFF450MML, ENCFF471EXM	6000427	ENCODE Processing Pipeline	3056b1a034fc75f667da081b1b1b2d45		https://www.encodeproject.org/files/ENCFF381BVK/@@download/ENCFF381BVK.bed.gz	hg19			released	control low read depth, missing genetic modification characterization			
ENCFF435XEZ	bed narrowPeak	peaks	ENCSR994YLZ	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				YY1-human	DNA					False	2016-03-31	ENCODE				1							ENCFF567MOA, ENCFF654EHF, ENCFF991UTU	6362369	ENCODE Processing Pipeline	0be7388e3daa3282e816f915b1749e17		https://www.encodeproject.org/files/ENCFF435XEZ/@@download/ENCFF435XEZ.bed.gz	hg19			released	low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF113EKC	bed narrowPeak	peaks	ENCSR998AJK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NRF1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF581ZJL, ENCFF615FDE	6766643	ENCODE Processing Pipeline	004b8c0ba595469c62a2df0a692f1732		https://www.encodeproject.org/files/ENCFF113EKC/@@download/ENCFF113EKC.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF052MLC	bed narrowPeak	peaks	ENCSR551MLB	ChIP-seq	UBERON:0004550	gastroesophageal sphincter	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF719ASG	5164567	ENCODE Processing Pipeline	564e358518e174fd8563fa6c0eef389d		https://www.encodeproject.org/files/ENCFF052MLC/@@download/ENCFF052MLC.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF853YEV	bed narrowPeak	peaks	ENCSR617RSQ	ChIP-seq	EFO:0002074	PC-3	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF112OEB, ENCFF153HRH, ENCFF186LRX	7130030	ENCODE Processing Pipeline	f42d062f5574d7c2034d46af3d87d5c2		https://www.encodeproject.org/files/ENCFF853YEV/@@download/ENCFF853YEV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF032UMZ	bed narrowPeak	peaks	ENCSR085QEV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NBN-human	DNA					False	2016-06-14	ENCODE				1							ENCFF581ZJL, ENCFF948RVR	6940315	ENCODE Processing Pipeline	7fe98b1db8a51da117e0bb6035488924		https://www.encodeproject.org/files/ENCFF032UMZ/@@download/ENCFF032UMZ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF625OET	bed narrowPeak	peaks	ENCSR886KKK	ChIP-seq	CL:0000103	bipolar neuron	in vitro differentiated cells	Homo sapiens	doxycycline hyclate	0.5 μg/mL	4 day	EZH2phosphoT487-human	DNA					False	2016-11-23	ENCODE				1							ENCFF093OXI, ENCFF571VVW, ENCFF692UAE	7193333	ENCODE Processing Pipeline	39c6a1d6ff2c03d44c0b0a0cd0abc75c		https://www.encodeproject.org/files/ENCFF625OET/@@download/ENCFF625OET.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	NTR biosample		
ENCFF142FYE	bed narrowPeak	peaks	ENCSR911GFJ	ChIP-seq	UBERON:0001114	right lobe of liver	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF744HKB, ENCFF928FSC	5990872	ENCODE Processing Pipeline	f8dd3e03ef057fbc2f714c956e7f72d8		https://www.encodeproject.org/files/ENCFF142FYE/@@download/ENCFF142FYE.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF898EEY	bed narrowPeak	peaks	ENCSR872BOU	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				FOXK2-human	DNA					False	2016-11-18	ENCODE				1							ENCFF529BVI, ENCFF714SYF, ENCFF772FBN	6910838	ENCODE Processing Pipeline	f42633570bd73eb713c2e9cdc00b5c5c		https://www.encodeproject.org/files/ENCFF898EEY/@@download/ENCFF898EEY.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF484TJY	bed narrowPeak	peaks	ENCSR736BUG	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				EGR1-human	DNA					False	2016-06-30	ENCODE				1							ENCFF200LFK, ENCFF321UJV, ENCFF475SVL	5724092	ENCODE Processing Pipeline	05d2bd2e4c29d2d4d58ec91760b0afb0		https://www.encodeproject.org/files/ENCFF484TJY/@@download/ENCFF484TJY.bed.gz	hg19			released	low read depth, antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF183ZZZ	bed narrowPeak	peaks	ENCSR098XMN	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				RXRA-human	DNA					False	2018-02-06	ENCODE				1							ENCFF321UJV, ENCFF409VUE	6281346	ENCODE Processing Pipeline	df0168efb952e7c4434ea0f9c41b7a00		https://www.encodeproject.org/files/ENCFF183ZZZ/@@download/ENCFF183ZZZ.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF335AYY	bed narrowPeak	peaks	ENCSR490LWA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-CEBPG-human	DNA					False	2017-04-14	ENCODE				1							ENCFF309ASH, ENCFF666KPK	7134776	ENCODE Processing Pipeline	7003592965f9b217550bb6548c2dd4f1		https://www.encodeproject.org/files/ENCFF335AYY/@@download/ENCFF335AYY.bed.gz	hg19			released	missing genetic modification characterization			
ENCFF736WSI	bed narrowPeak	peaks	ENCSR764CZW	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF217-human	DNA					False	2017-06-07	ENCODE				1							ENCFF593EWE, ENCFF901CND	6893404	ENCODE Processing Pipeline	252b55c4550ec6b08124dd53f6f0a2e4		https://www.encodeproject.org/files/ENCFF736WSI/@@download/ENCFF736WSI.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF771MQQ	bed narrowPeak	peaks	ENCSR681WHQ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ETS1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF172WFR, ENCFF863VMN	5083194	ENCODE Processing Pipeline	4b99e565fa0694f3cf163d2d13b50b86		https://www.encodeproject.org/files/ENCFF771MQQ/@@download/ENCFF771MQQ.bed.gz	hg19			released	low read length	experiment not submitted to GEO	partially characterized antibody	
ENCFF824NFX	bed narrowPeak	peaks	ENCSR701AQS	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF592-human	DNA					False	2016-10-31	ENCODE				1							ENCFF517CCI, ENCFF583FAG	6211167	ENCODE Processing Pipeline	6e287b966c2ea7a889f418d0e1e64d97		https://www.encodeproject.org/files/ENCFF824NFX/@@download/ENCFF824NFX.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF541GTF	bed narrowPeak	peaks	ENCSR822PJT	ChIP-seq	UBERON:0001323	tibial nerve	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF309III, ENCFF735LIV	6736752	ENCODE Processing Pipeline	9a5076239e164774b5cc1f186250afab		https://www.encodeproject.org/files/ENCFF541GTF/@@download/ENCFF541GTF.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF161DQL	bed narrowPeak	peaks	ENCSR423RTK	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				GATA3-human	DNA					False	2016-10-26	ENCODE				1							ENCFF447KVS, ENCFF763TBX, ENCFF823USR	7269367	ENCODE Processing Pipeline	ef22e925cb69dd55cd16da61d179a48e		https://www.encodeproject.org/files/ENCFF161DQL/@@download/ENCFF161DQL.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF433SFB	bed narrowPeak	peaks	ENCSR845BCL	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-ZNF639-human	DNA					False	2016-06-13	ENCODE				1							ENCFF117CKT, ENCFF574IJZ	6612953	ENCODE Processing Pipeline	e560efe96923141e1f2da95dfb04ab90		https://www.encodeproject.org/files/ENCFF433SFB/@@download/ENCFF433SFB.bed.gz	hg19			released	low read depth, missing genetic modification characterization			
ENCFF648CSH	bed narrowPeak	peaks	ENCSR986XYK	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				PKNOX1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF583FAG, ENCFF679HDV	6499228	ENCODE Processing Pipeline	791ecf1ff8b011731451176d67abdd5c		https://www.encodeproject.org/files/ENCFF648CSH/@@download/ENCFF648CSH.bed.gz	hg19			released				
ENCFF706SMS	bed narrowPeak	peaks	ENCSR793HVL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				E2F8-human	DNA					False	2018-01-26	ENCODE				1							ENCFF472GHA, ENCFF941TZZ	6048487	ENCODE Processing Pipeline	120337e4ca0cb8e4c946c6dfb3c7aaf1		https://www.encodeproject.org/files/ENCFF706SMS/@@download/ENCFF706SMS.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity	experiment not submitted to GEO	partially characterized antibody	
ENCFF888AZU	bed narrowPeak	peaks	ENCSR075HTM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDAC2-human	DNA					False	2016-10-31	ENCODE				1							ENCFF406KFP, ENCFF581ZJL	6893480	ENCODE Processing Pipeline	aa22323020872da6f25c0326969b9c18		https://www.encodeproject.org/files/ENCFF888AZU/@@download/ENCFF888AZU.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF342POD	bed narrowPeak	peaks	ENCSR864KNH	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				YBX1-human	DNA					False	2016-09-20	ENCODE				1							ENCFF447KVS, ENCFF740KJR, ENCFF823USR	7065075	ENCODE Processing Pipeline	057bb4558006aa013316912296270fc1		https://www.encodeproject.org/files/ENCFF342POD/@@download/ENCFF342POD.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			
ENCFF398VGB	bed narrowPeak	peaks	ENCSR744YJR	ChIP-seq	UBERON:0002046	thyroid gland	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF446KCO, ENCFF667NBG	6453063	ENCODE Processing Pipeline	a7c0fedf24ba4507e174641879f1a881		https://www.encodeproject.org/files/ENCFF398VGB/@@download/ENCFF398VGB.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF517DCO	bed narrowPeak	peaks	ENCSR096KWU	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF207-human	DNA					False	2016-09-01	ENCODE				1							ENCFF100EAO, ENCFF583FAG	6182723	ENCODE Processing Pipeline	9c925ac476a6a170bdb6a98588c00da0		https://www.encodeproject.org/files/ENCFF517DCO/@@download/ENCFF517DCO.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			
ENCFF131YKB	bed narrowPeak	peaks	ENCSR000FCD	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SMAD5-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF310TZE, ENCFF747SPK	6404445	ENCODE Processing Pipeline	ce527a6d51afbb56bee2e1ff7aa357bf		https://www.encodeproject.org/files/ENCFF131YKB/@@download/ENCFF131YKB.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF128RLF	bed narrowPeak	peaks	ENCSR876UYH	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZHX2-human	DNA					False	2016-11-08	ENCODE				1							ENCFF040OBI, ENCFF455SPG, ENCFF853BBD	6248897	ENCODE Processing Pipeline	b7ffc0466ab1748fee9b6cf80271432e		https://www.encodeproject.org/files/ENCFF128RLF/@@download/ENCFF128RLF.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF131ZOO	bed narrowPeak	peaks	ENCSR099NCH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF24-human	DNA					False	2016-07-28	ENCODE				1							ENCFF045NGS, ENCFF581ZJL	7152432	ENCODE Processing Pipeline	022b59d0cfcc0164573c320d5b12e414		https://www.encodeproject.org/files/ENCFF131ZOO/@@download/ENCFF131ZOO.bed.gz	hg19			released	low read depth			
ENCFF915JWV	bed narrowPeak	peaks	ENCSR656MXA	ChIP-seq	NTR:0000711	neural progenitor cell	in vitro differentiated cells	Homo sapiens				EZH2phosphoT487-human	DNA					False	2017-02-03	ENCODE				1							ENCFF293YFD, ENCFF387KXA, ENCFF762JSN	6992709	ENCODE Processing Pipeline	322e598fffed3dc87b0e289302911269		https://www.encodeproject.org/files/ENCFF915JWV/@@download/ENCFF915JWV.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample		
ENCFF931OYK	bed narrowPeak	peaks	ENCSR465XQW	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF217-human	DNA					False	2017-06-23	ENCODE				1							ENCFF447KVS, ENCFF648GJU, ENCFF823USR	7038806	ENCODE Processing Pipeline	2e67d8c4c5a5447b6e7f56507d309e06		https://www.encodeproject.org/files/ENCFF931OYK/@@download/ENCFF931OYK.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample		
ENCFF854NUO	bed narrowPeak	peaks	ENCSR912ZIY	ChIP-seq	UBERON:0002367	prostate gland	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF780ISS	5933733	ENCODE Processing Pipeline	fa1c9f9d1b719d69f4b30900233991e9		https://www.encodeproject.org/files/ENCFF854NUO/@@download/ENCFF854NUO.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			missing control alignments
ENCFF239APD	bed narrowPeak	peaks	ENCSR503VTG	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF24-human	DNA					False	2017-06-26	ENCODE				1							ENCFF079WOP, ENCFF447KVS, ENCFF823USR	6566644	ENCODE Processing Pipeline	ae33a2639073b893409a18c9490814f0		https://www.encodeproject.org/files/ENCFF239APD/@@download/ENCFF239APD.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF811UJD	bed narrowPeak	peaks	ENCSR000DYS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF028CUJ, ENCFF267FMB, ENCFF378YAW	4081503	ENCODE Processing Pipeline	1ae70b98294604a21ef015e2422e3613		https://www.encodeproject.org/files/ENCFF811UJD/@@download/ENCFF811UJD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF644HHB	bed narrowPeak	peaks	ENCSR000BJJ	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF410PKI, ENCFF601DDB	30829	ENCODE Processing Pipeline	1b27e74260cf0b9b43575bc68ebe9ba8		https://www.encodeproject.org/files/ENCFF644HHB/@@download/ENCFF644HHB.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample	control insufficient read depth, insufficient replicate concordance	
ENCFF306UPG	bed narrowPeak	peaks	ENCSR412YGM	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZSCAN29-human	DNA					False	2017-05-17	ENCODE				1							ENCFF901CND, ENCFF914YJM	5433941	ENCODE Processing Pipeline	f5b014bec09dab11dd8a15a8a7feade2		https://www.encodeproject.org/files/ENCFF306UPG/@@download/ENCFF306UPG.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF393OKG	bed narrowPeak	peaks	ENCSR391ZKN	ChIP-seq	UBERON:0001211	Peyer's patch	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF049CMN, ENCFF096CSL	5438993	ENCODE Processing Pipeline	fa81190887745a37f19c8594ee9faf54		https://www.encodeproject.org/files/ENCFF393OKG/@@download/ENCFF393OKG.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF508LBP	bed narrowPeak	peaks	ENCSR460LGH	ChIP-seq	EFO:0006365	C4-2B	cell line	Homo sapiens				CTCF-human	DNA					False	2017-07-21	ENCODE				1							ENCFF556ZML, ENCFF801WHL, ENCFF923EBC	7137866	ENCODE Processing Pipeline	aae0298678f287cb1ba69c6b6b52ea88		https://www.encodeproject.org/files/ENCFF508LBP/@@download/ENCFF508LBP.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF510WZL	bed narrowPeak	peaks	ENCSR000BGB	ChIP-seq	EFO:0002860	SK-N-MC	cell line	Homo sapiens				FOXP2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF032SQZ, ENCFF257YRW	2819827	ENCODE Processing Pipeline	a87f8be6a5385104cb344a3d2bd94a7a		https://www.encodeproject.org/files/ENCFF510WZL/@@download/ENCFF510WZL.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth	control extremely low read depth, extremely low read length
ENCFF586WMF	bed narrowPeak	peaks	ENCSR559KAB	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-19	ENCODE				1							ENCFF239CRJ, ENCFF992PUN	6444911	ENCODE Processing Pipeline	a498c601f0df7db09aee8724ad4dece5		https://www.encodeproject.org/files/ENCFF586WMF/@@download/ENCFF586WMF.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF551NXL	bed narrowPeak	peaks	ENCSR176BAH	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF457XBH	6818115	ENCODE Processing Pipeline	6bcc55f36d892316fbe4013f95cff52e		https://www.encodeproject.org/files/ENCFF551NXL/@@download/ENCFF551NXL.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF174HNI	bed narrowPeak	peaks	ENCSR278SQL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NBN-human	DNA					False	2016-08-24	ENCODE				1							ENCFF282JRK, ENCFF941TZZ	6989177	ENCODE Processing Pipeline	e0dc0395c4fcbd87d364ab2b3661eced		https://www.encodeproject.org/files/ENCFF174HNI/@@download/ENCFF174HNI.bed.gz	hg19			released				
ENCFF362CPR	bed narrowPeak	peaks	ENCSR270TYZ	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF020FAT	7041585	ENCODE Processing Pipeline	07fc3b79cc95f0ed5dbfb696fde20b65		https://www.encodeproject.org/files/ENCFF362CPR/@@download/ENCFF362CPR.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF433YXI	bed narrowPeak	peaks	ENCSR828PZH	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF931BEZ	4906299	ENCODE Processing Pipeline	9e824e15037fe6a72787c8d1c8408624		https://www.encodeproject.org/files/ENCFF433YXI/@@download/ENCFF433YXI.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF665KNY	bed narrowPeak	peaks	ENCSR859FDL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF687-human	DNA					False	2017-06-26	ENCODE				1							ENCFF577XDA, ENCFF592WAL, ENCFF901CND	6736864	ENCODE Processing Pipeline	2e36cff01444f7ba282020bc8e7b0328		https://www.encodeproject.org/files/ENCFF665KNY/@@download/ENCFF665KNY.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF235SRJ	bed narrowPeak	peaks	ENCSR877SNO	ChIP-seq	UBERON:0000996	vagina	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF735WJM	5342329	ENCODE Processing Pipeline	76da94379a763d4fc8eef2c2b4c6aa4a		https://www.encodeproject.org/files/ENCFF235SRJ/@@download/ENCFF235SRJ.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			missing control alignments
ENCFF149VRW	bed narrowPeak	peaks	ENCSR928LDG	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF259CUG	6579090	ENCODE Processing Pipeline	3dcc54703f8b206b84df53c4c3c2aae9		https://www.encodeproject.org/files/ENCFF149VRW/@@download/ENCFF149VRW.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF038BWR	bed narrowPeak	peaks	ENCSR313BMV	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF251UXN	5797053	ENCODE Processing Pipeline	81dc193717ccd7b6e24037e8cf3defc4		https://www.encodeproject.org/files/ENCFF038BWR/@@download/ENCFF038BWR.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF905MOZ	bed narrowPeak	peaks	ENCSR773QRB	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF937OAI	5633472	ENCODE Processing Pipeline	8edfc1301ca2e4594dc31ab7c8cebcdb		https://www.encodeproject.org/files/ENCFF905MOZ/@@download/ENCFF905MOZ.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF938QKL	bed narrowPeak	peaks	ENCSR975QNR	ChIP-seq	UBERON:0000996	vagina	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF604MCE	5547910	ENCODE Processing Pipeline	7da9e1454ba834410306993ded988194		https://www.encodeproject.org/files/ENCFF938QKL/@@download/ENCFF938QKL.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF854RKR	bed narrowPeak	peaks	ENCSR906OMM	ChIP-seq	UBERON:0004550	gastroesophageal sphincter	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF696DSP	5254882	ENCODE Processing Pipeline	f2a2ee8ab8cd634f5a8da5952b6944e3		https://www.encodeproject.org/files/ENCFF854RKR/@@download/ENCFF854RKR.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF366JFG	bed narrowPeak	peaks	ENCSR924TVL	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				RFX5-human	DNA					False	2014-07-07	ENCODE				1							ENCFF253MVW, ENCFF583FAG	6211597	ENCODE Processing Pipeline	71fdc5bff6a4fe9f846ed56491c27998		https://www.encodeproject.org/files/ENCFF366JFG/@@download/ENCFF366JFG.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF480BUU	bed narrowPeak	peaks	ENCSR659LJJ	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				HDAC2-human	DNA					False	2016-11-23	ENCODE				1							ENCFF484DFP, ENCFF801GGG, ENCFF881DVS	6385654	ENCODE Processing Pipeline	97c78f4b0f71735d633e92d7e9bec405		https://www.encodeproject.org/files/ENCFF480BUU/@@download/ENCFF480BUU.bed.gz	hg19			released				missing control alignments
ENCFF610BOW	bed narrowPeak	peaks	ENCSR465VLK	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				FOXK2-human	DNA					False	2016-06-14	ENCODE				1							ENCFF574FWU, ENCFF583FAG	5680847	ENCODE Processing Pipeline	be639b0e150d2dbf42e3daa91726ddab		https://www.encodeproject.org/files/ENCFF610BOW/@@download/ENCFF610BOW.bed.gz	hg19			released	borderline replicate concordance			
ENCFF894JDZ	bed narrowPeak	peaks	ENCSR334KIQ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				SP1-human	DNA					False	2016-10-31	ENCODE				1							ENCFF449NNE, ENCFF865UXV	6083895	ENCODE Processing Pipeline	6f28a07567a7c87aac0144826f7c10d2		https://www.encodeproject.org/files/ENCFF894JDZ/@@download/ENCFF894JDZ.bed.gz	hg19			released				
ENCFF724MMC	bed narrowPeak	peaks	ENCSR560BUE	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-10-19	ENCODE				1							ENCFF565WPL, ENCFF587UZE	6157902	ENCODE Processing Pipeline	c0564501c9dc56734c9d47b1729a7350		https://www.encodeproject.org/files/ENCFF724MMC/@@download/ENCFF724MMC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF795HRT	bed narrowPeak	peaks	ENCSR435OQD	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZFX-human	DNA					False	2017-07-21	ENCODE				1							ENCFF008PUA, ENCFF068ULX, ENCFF278ROO	7317253	ENCODE Processing Pipeline	05f9cdcc9027a766d96bb56fe6079796		https://www.encodeproject.org/files/ENCFF795HRT/@@download/ENCFF795HRT.bed.gz	hg19			released	borderline replicate concordance	NTR biosample		
ENCFF378WXQ	bed narrowPeak	peaks	ENCSR894SXR	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TCF12-human	DNA					False	2017-06-07	ENCODE				1							ENCFF172XZA, ENCFF520NCD, ENCFF843IXX	6797746	ENCODE Processing Pipeline	4901a8680828e0189b635ddb7439f3f3		https://www.encodeproject.org/files/ENCFF378WXQ/@@download/ENCFF378WXQ.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			
ENCFF987VRF	bed narrowPeak	peaks	ENCSR003SZZ	ChIP-seq	UBERON:0006920	esophagus squamous epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF240WVD, ENCFF877MCP	6556307	ENCODE Processing Pipeline	675cf18322652dc745d98cbba4ba01cc		https://www.encodeproject.org/files/ENCFF987VRF/@@download/ENCFF987VRF.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF728JUW	bed narrowPeak	peaks	ENCSR225OKX	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF541AWB, ENCFF856ESK	5692158	ENCODE Processing Pipeline	2be009be9c312bb21aba7458718b3fca		https://www.encodeproject.org/files/ENCFF728JUW/@@download/ENCFF728JUW.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF927GGF	bed narrowPeak	peaks	ENCSR450FRI	ChIP-seq	UBERON:0006920	esophagus squamous epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF007JEJ, ENCFF764UTK	6766708	ENCODE Processing Pipeline	ae781c3f65e4bf41cd2ee0cd17f786da		https://www.encodeproject.org/files/ENCFF927GGF/@@download/ENCFF927GGF.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF882WGE	bed narrowPeak	peaks	ENCSR415TXN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NONO-human	DNA			SDS	formaldehyde	False	2017-02-27	ENCODE				1							ENCFF413LCN, ENCFF466LEC, ENCFF984PYA	5668214	ENCODE Processing Pipeline	bb6cceac098c9c18a285ddaac2ab0c6c		https://www.encodeproject.org/files/ENCFF882WGE/@@download/ENCFF882WGE.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF698DYH	bed narrowPeak	peaks	ENCSR014GSQ	ChIP-seq	UBERON:0002369	adrenal gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF027GOA, ENCFF312ULR	6053666	ENCODE Processing Pipeline	b4dae9b1fe658119f852ada3a60b4b10		https://www.encodeproject.org/files/ENCFF698DYH/@@download/ENCFF698DYH.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF930UBG	bed narrowPeak	peaks	ENCSR979FQP	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				GATAD2B-human	DNA					False	2017-09-29	ENCODE				1							ENCFF402RYM, ENCFF583FAG	6001261	ENCODE Processing Pipeline	bd2667b9b5997fa88abd3c21695a8128		https://www.encodeproject.org/files/ENCFF930UBG/@@download/ENCFF930UBG.bed.gz	hg19			released				
ENCFF845TET	bed narrowPeak	peaks	ENCSR290MUH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-GABPA-human	DNA					False	2016-06-13	ENCODE				1							ENCFF009ZXV, ENCFF629YBN	6765258	ENCODE Processing Pipeline	e7f259ed3066ecddb659b324d47541a4		https://www.encodeproject.org/files/ENCFF845TET/@@download/ENCFF845TET.bed.gz	hg19			released	low read depth, missing genetic modification characterization			
ENCFF389SGB	bed narrowPeak	peaks	ENCSR534VHI	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				ETS1-human	DNA					False	2016-06-13	ENCODE				1							ENCFF017YFK, ENCFF774JUR	5026501	ENCODE Processing Pipeline	fe1b3532c7c21cf270937a99c2fc04b9		https://www.encodeproject.org/files/ENCFF389SGB/@@download/ENCFF389SGB.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			missing control alignments
ENCFF473OII	bed narrowPeak	peaks	ENCSR437GBJ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFATC3-human	DNA					False	2018-01-26	ENCODE				1							ENCFF375JDH, ENCFF901CND	6546459	ENCODE Processing Pipeline	9ed939dcb5162b559ebec59f2374d1f5		https://www.encodeproject.org/files/ENCFF473OII/@@download/ENCFF473OII.bed.gz	hg19			released	mild to moderate bottlenecking, inconsistent platforms, moderate library complexity	experiment not submitted to GEO	poor library complexity, severe bottlenecking, partially characterized antibody	
ENCFF138BYH	bed narrowPeak	peaks	ENCSR000DZA	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MAZ-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF289UDS, ENCFF545DZO	4568115	ENCODE Processing Pipeline	ec1198a4c0a1cd0819201529ef26e465		https://www.encodeproject.org/files/ENCFF138BYH/@@download/ENCFF138BYH.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF839MCU	bed narrowPeak	peaks	ENCSR601OGE	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				HNF4A-human	DNA					False	2016-06-30	ENCODE				1							ENCFF200LFK, ENCFF321UJV, ENCFF689YYU	5980828	ENCODE Processing Pipeline	c861ae9a61a819a72c11b296796dff7a		https://www.encodeproject.org/files/ENCFF839MCU/@@download/ENCFF839MCU.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF373EUK	bed narrowPeak	peaks	ENCSR837GTK	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				JUND-human	DNA					False	2016-06-30	ENCODE				1							ENCFF235CCD, ENCFF263ZVJ, ENCFF321UJV	6321057	ENCODE Processing Pipeline	b2742acb42d3e4e5a9501075875e1a85		https://www.encodeproject.org/files/ENCFF373EUK/@@download/ENCFF373EUK.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF670QJS	bed narrowPeak	peaks	ENCSR000ARI	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF165PBN, ENCFF293TTT, ENCFF705NOL	6810374	ENCODE Processing Pipeline	3ff7564521f4c2c8a8f5c391c9c91e28		https://www.encodeproject.org/files/ENCFF670QJS/@@download/ENCFF670QJS.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF028OCG	bed narrowPeak	peaks	ENCSR000EZV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		6.0 hour	MYC-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF834GPI, ENCFF998GMZ	3212789	ENCODE Processing Pipeline	ed9641efadb73b9a2d36f0187bb15fd8		https://www.encodeproject.org/files/ENCFF028OCG/@@download/ENCFF028OCG.bed.gz	hg19			released	control low read depth, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF235AXH	bed narrowPeak	peaks	ENCSR000BPJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF146HTM, ENCFF585PFH	3326792	ENCODE Processing Pipeline	1607a273700f6eefef836f47e175b8d9		https://www.encodeproject.org/files/ENCFF235AXH/@@download/ENCFF235AXH.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF194TDU	bed narrowPeak	peaks	ENCSR000EIA	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				MXI1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF089TJI, ENCFF392JWS, ENCFF666ZPP	6203326	ENCODE Processing Pipeline	33a874820969f709e61964b9aacd2a0f		https://www.encodeproject.org/files/ENCFF194TDU/@@download/ENCFF194TDU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF906ESV	bed narrowPeak	peaks	ENCSR000BLW	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				EP300-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF373JKP	4787613	ENCODE Processing Pipeline	9eeaf89d2ba54956f5b1a59068dc294b		https://www.encodeproject.org/files/ENCFF906ESV/@@download/ENCFF906ESV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF372YKO	bed narrowPeak	peaks	ENCSR000EXP	ChIP-seq	CL:0000765	erythroblast	primary cell	Homo sapiens				GATA1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF092AFJ, ENCFF781IPH	5914331	ENCODE Processing Pipeline	ebfc24572266527a081b131a5fed82fd		https://www.encodeproject.org/files/ENCFF372YKO/@@download/ENCFF372YKO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth, severe bottlenecking	
ENCFF363JNV	bed narrowPeak	peaks	ENCSR893QWP	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				REST-human	DNA					False	2016-06-30	ENCODE				1							ENCFF359TIO, ENCFF894WFR	5567841	ENCODE Processing Pipeline	ed353034eef1a680977248a5723c6883		https://www.encodeproject.org/files/ENCFF363JNV/@@download/ENCFF363JNV.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF525QBA	bed narrowPeak	peaks	ENCSR000DMY	ChIP-seq	EFO:0002939	medulloblastoma	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF023GMN, ENCFF446HAE	3655099	ENCODE Processing Pipeline	2cca84b4e022702c1ccf58715598d44f		https://www.encodeproject.org/files/ENCFF525QBA/@@download/ENCFF525QBA.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		missing control alignments
ENCFF099GES	bed narrowPeak	peaks	ENCSR047DRF	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF435EWI	4235605	ENCODE Processing Pipeline	c82f6830ae4ec56fbbcc45e5cc3d739b		https://www.encodeproject.org/files/ENCFF099GES/@@download/ENCFF099GES.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF311HXH	bed narrowPeak	peaks	ENCSR000BLT	ChIP-seq	EFO:0002786	GM12892	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF134LQW, ENCFF632AHN	5189469	ENCODE Processing Pipeline	32ce4896d147292c080d225b3097ded9		https://www.encodeproject.org/files/ENCFF311HXH/@@download/ENCFF311HXH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF075WCP	bed narrowPeak	peaks	ENCSR983SZL	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF031YAG	5215129	ENCODE Processing Pipeline	f6e0179eb4400c12766a4769cd8475fe		https://www.encodeproject.org/files/ENCFF075WCP/@@download/ENCFF075WCP.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF899XEM	bed narrowPeak	peaks	ENCSR000EWF	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF193QAR	1723059	ENCODE Processing Pipeline	682a1f74ecb0c3f653a3f0f457a3fdb1		https://www.encodeproject.org/files/ENCFF899XEM/@@download/ENCFF899XEM.bed.gz	hg19			released	borderline replicate concordance	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF515NYK	bed narrowPeak	peaks	ENCSR205FOW	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				ATF3-human	DNA					False	2016-03-31	ENCODE				1							ENCFF654EHF, ENCFF807CUF, ENCFF988XFX	6444026	ENCODE Processing Pipeline	fedb647c9ac83e7032358eaee3cc448c		https://www.encodeproject.org/files/ENCFF515NYK/@@download/ENCFF515NYK.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF651MBI	bed narrowPeak	peaks	ENCSR297GII	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				HNF4G-human	DNA					False	2016-06-30	ENCODE				1							ENCFF359TIO, ENCFF849EIR, ENCFF991UTU	5909377	ENCODE Processing Pipeline	4b5a5979d48d2b31a60bfbc5e31b029f		https://www.encodeproject.org/files/ENCFF651MBI/@@download/ENCFF651MBI.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF971SJB	bed narrowPeak	peaks	ENCSR324RCI	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				FOXA1-human	DNA					False	2016-06-30	ENCODE				1							ENCFF811PZE, ENCFF991UTU	5575230	ENCODE Processing Pipeline	dfe5f474cdaa145a30751de61781cda3		https://www.encodeproject.org/files/ENCFF971SJB/@@download/ENCFF971SJB.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF682TFX	bed narrowPeak	peaks	ENCSR619IUE	ChIP-seq	CL:0000103	bipolar neuron	in vitro differentiated cells	Homo sapiens	doxycycline hyclate	0.5 μg/mL	4 day	CTCF-human	DNA					False	2016-10-27	ENCODE				1							ENCFF121VXJ, ENCFF829HKP	4536822	ENCODE Processing Pipeline	898addb82a3a00236f8dd5143bea2588		https://www.encodeproject.org/files/ENCFF682TFX/@@download/ENCFF682TFX.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption	biological replicates with identical biosample, NTR biosample		
ENCFF047ZBU	bed narrowPeak	peaks	ENCSR212YKD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SKIL-human	DNA					False	2017-07-24	ENCODE				1							ENCFF287SKW, ENCFF708NLM	6753854	ENCODE Processing Pipeline	d27b072c741a350d638f0f1bba53c8a4		https://www.encodeproject.org/files/ENCFF047ZBU/@@download/ENCFF047ZBU.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, inconsistent platforms	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF084INO	bed narrowPeak	peaks	ENCSR386YIH	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				SP1-human	DNA					False	2018-02-08	ENCODE				1							ENCFF571ICH, ENCFF807CUF, ENCFF991UTU	6726328	ENCODE Processing Pipeline	c86c615448e702fdfffcb965bbf255d8		https://www.encodeproject.org/files/ENCFF084INO/@@download/ENCFF084INO.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF305OFV	bed narrowPeak	peaks	ENCSR891WPD	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF502VMV	5707914	ENCODE Processing Pipeline	3977eb99d78fe78ea670cee7e4a9bd35		https://www.encodeproject.org/files/ENCFF305OFV/@@download/ENCFF305OFV.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF289KHP	bed narrowPeak	peaks	ENCSR000BVO	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF356EIA, ENCFF370NFJ	5301930	ENCODE Processing Pipeline	54692f54484dbc45dd5b24f97827cf46		https://www.encodeproject.org/files/ENCFF289KHP/@@download/ENCFF289KHP.bed.gz	hg19			released	low read depth	biological replicates with identical biosample		
ENCFF901DDA	bed narrowPeak	peaks	ENCSR445QRF	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				HNF4A-human	DNA					False	2016-06-30	ENCODE				1							ENCFF518GRP, ENCFF991UTU	6321436	ENCODE Processing Pipeline	226a375cdfc7012ccf666775f92149d7		https://www.encodeproject.org/files/ENCFF901DDA/@@download/ENCFF901DDA.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF987RLN	bed narrowPeak	peaks	ENCSR158TRP	ChIP-seq	UBERON:0000992	ovary	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF782VOH	5702107	ENCODE Processing Pipeline	1d3bf3a05b1216602a3795be6f6f0e85		https://www.encodeproject.org/files/ENCFF987RLN/@@download/ENCFF987RLN.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF145YNF	bed narrowPeak	peaks	ENCSR290ZOS	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				EGR1-human	DNA					False	2018-02-08	ENCODE				1							ENCFF682QIZ, ENCFF991UTU	4609083	ENCODE Processing Pipeline	bbb806fcf28ecd705613053b179cb4a9		https://www.encodeproject.org/files/ENCFF145YNF/@@download/ENCFF145YNF.bed.gz	hg19			released	low read depth, antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF151FBW	bed narrowPeak	peaks	ENCSR847DIT	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				MAX-human	DNA					False	2016-06-30	ENCODE				1							ENCFF654EHF, ENCFF668CFX, ENCFF991UTU	6402451	ENCODE Processing Pipeline	84f3ade497df8a9e049d1fd7c1295c5b		https://www.encodeproject.org/files/ENCFF151FBW/@@download/ENCFF151FBW.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF634EKL	bed narrowPeak	peaks	ENCSR038GMB	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				GABPA-human	DNA					False	2016-06-30	ENCODE				1							ENCFF200LFK, ENCFF274NHB, ENCFF321UJV	6358957	ENCODE Processing Pipeline	73c23b4202dccbc449bc25713a56cbd7		https://www.encodeproject.org/files/ENCFF634EKL/@@download/ENCFF634EKL.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF582WLM	bed narrowPeak	peaks	ENCSR516HUP	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				ZBTB33-human	DNA					False	2016-09-19	ENCODE				1							ENCFF097YMB, ENCFF321UJV	6367390	ENCODE Processing Pipeline	5a169b97b1266e69d4c5b7b56e48567a		https://www.encodeproject.org/files/ENCFF582WLM/@@download/ENCFF582WLM.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF125PLO	bed narrowPeak	peaks	ENCSR310NYI	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				FOXA2-human	DNA					False	2016-06-30	ENCODE				1							ENCFF235CCD, ENCFF276ETD, ENCFF321UJV	6079049	ENCODE Processing Pipeline	0c1c0a603aa87fcd889217b1fc1ee62b		https://www.encodeproject.org/files/ENCFF125PLO/@@download/ENCFF125PLO.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF746ZUT	bed narrowPeak	peaks	ENCSR544APK	ChIP-seq	UBERON:0002084	heart left ventricle	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF320PZV, ENCFF738KRH	6470437	ENCODE Processing Pipeline	d82e0e54ca11388d7a1a4ddae8143302		https://www.encodeproject.org/files/ENCFF746ZUT/@@download/ENCFF746ZUT.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	experiment not submitted to GEO	severe bottlenecking	
ENCFF763SSU	bed narrowPeak	peaks	ENCSR746XEG	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFXL1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF285GPK, ENCFF901CND	6126835	ENCODE Processing Pipeline	dfc477ce4fcf5905d865702a5f6909f6		https://www.encodeproject.org/files/ENCFF763SSU/@@download/ENCFF763SSU.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption			
ENCFF033VDX	bed narrowPeak	peaks	ENCSR000EGJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF058VAU, ENCFF710NTS	5482659	ENCODE Processing Pipeline	d15682863af1bf809e031c7812eb0d88		https://www.encodeproject.org/files/ENCFF033VDX/@@download/ENCFF033VDX.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF425DIK	bed narrowPeak	peaks	ENCSR071XWO	ChIP-seq	UBERON:0011907	gastrocnemius medialis	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF675VOA, ENCFF722MYF	6648174	ENCODE Processing Pipeline	13f679f989bd340e4fbbe544ed089031		https://www.encodeproject.org/files/ENCFF425DIK/@@download/ENCFF425DIK.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF547MRJ	bed narrowPeak	peaks	ENCSR000EFR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZC3H11A-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF349TZM, ENCFF710NTS	4633130	ENCODE Processing Pipeline	9577c1e0d4b7c256eb256e79d11f8f85		https://www.encodeproject.org/files/ENCFF547MRJ/@@download/ENCFF547MRJ.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF526LHJ	bed narrowPeak	peaks	ENCSR441VHN	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				IKZF1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF032EMH, ENCFF901CND	7179543	ENCODE Processing Pipeline	fe18eb06d6f26c1cde22b675086c68d4		https://www.encodeproject.org/files/ENCFF526LHJ/@@download/ENCFF526LHJ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF244MXM	bed narrowPeak	peaks	ENCSR036EGV	ChIP-seq	CL:1001606	foreskin keratinocyte	primary cell	Homo sapiens	calcium	1.2 mM	2.5 day	CTCF-human	DNA				formaldehyde	False	2017-10-10	GGR				1							ENCFF455LUX, ENCFF475WZW	6257292	ENCODE Processing Pipeline	3822814854158c3c3cc21756e9bedc22		https://www.encodeproject.org/files/ENCFF244MXM/@@download/ENCFF244MXM.bed.gz	hg19			released		experiment not submitted to GEO		
ENCFF240CUH	bed narrowPeak	peaks	ENCSR838RUX	ChIP-seq	UBERON:0006920	esophagus squamous epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF134TXS, ENCFF472GUK	6440167	ENCODE Processing Pipeline	f63e36ef8a94a89e79f64f0f475475af		https://www.encodeproject.org/files/ENCFF240CUH/@@download/ENCFF240CUH.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF907WEZ	bed narrowPeak	peaks	ENCSR000DYE	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				RAD21-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF296BML, ENCFF512WDI, ENCFF931GZJ	4642195	ENCODE Processing Pipeline	e100ed916c4dab0ebf0aee297c69717c		https://www.encodeproject.org/files/ENCFF907WEZ/@@download/ENCFF907WEZ.bed.gz	hg19			released	low read length, inconsistent platforms, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF027UPQ	bed narrowPeak	peaks	ENCSR492LTS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BCLAF1-human	DNA					False	2017-02-02	ENCODE				1							ENCFF581ZJL, ENCFF623FBO	6005463	ENCODE Processing Pipeline	1353812070a8ae4076074665d90ec565		https://www.encodeproject.org/files/ENCFF027UPQ/@@download/ENCFF027UPQ.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF578ZTX	bed narrowPeak	peaks	ENCSR773JBP	ChIP-seq	UBERON:0006920	esophagus squamous epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF093JHV, ENCFF734BLH	6361168	ENCODE Processing Pipeline	bb59892c0f059e6a8a4d0a88b0c5a8dd		https://www.encodeproject.org/files/ENCFF578ZTX/@@download/ENCFF578ZTX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF841RCY	bed narrowPeak	peaks	ENCSR735KEY	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				FOXA1-human	DNA					False	2016-06-30	ENCODE				1							ENCFF235CCD, ENCFF321UJV, ENCFF430SMC	5847826	ENCODE Processing Pipeline	d07b88783c8b876b0981da2fa3a322b2		https://www.encodeproject.org/files/ENCFF841RCY/@@download/ENCFF841RCY.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF106WRW	bed narrowPeak	peaks	ENCSR707QWA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR2F6-human	DNA					False	2016-06-28	ENCODE				1							ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ	6366354	ENCODE Processing Pipeline	87292ab1949c87c6aaaff0e84e4cf796		https://www.encodeproject.org/files/ENCFF106WRW/@@download/ENCFF106WRW.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF204QNV	bed narrowPeak	peaks	ENCSR102KIN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZMYM3-human	DNA					False	2016-10-12	ENCODE				1							ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ	6492911	ENCODE Processing Pipeline	9de266ebdbe9e0035b2c922738642fcf		https://www.encodeproject.org/files/ENCFF204QNV/@@download/ENCFF204QNV.bed.gz	hg19			released	antibody characterized with exemption, mixed read lengths			
ENCFF562MDO	bed narrowPeak	peaks	ENCSR655ECZ	ChIP-seq	UBERON:0000996	vagina	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF644OEB, ENCFF679FAU	5187744	ENCODE Processing Pipeline	f0a8b258977ad2bda4f02855396e0036		https://www.encodeproject.org/files/ENCFF562MDO/@@download/ENCFF562MDO.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF761HEQ	bed narrowPeak	peaks	ENCSR090ZDO	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				SUZ12-human	DNA					False	2016-11-18	ENCODE				1							ENCFF529BVI, ENCFF537OFY, ENCFF772FBN	6952302	ENCODE Processing Pipeline	32f6644e93b2f7f0eb8f23edf41cec97		https://www.encodeproject.org/files/ENCFF761HEQ/@@download/ENCFF761HEQ.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF037YFB	bed narrowPeak	peaks	ENCSR302AWT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				FOXK2-human	DNA					False	2016-06-14	ENCODE				1							ENCFF135OYM, ENCFF581ZJL	6453786	ENCODE Processing Pipeline	8f2d9cef390dd17b72020147d0bd37c5		https://www.encodeproject.org/files/ENCFF037YFB/@@download/ENCFF037YFB.bed.gz	hg19			released	low read depth			
ENCFF146REQ	bed narrowPeak	peaks	ENCSR494TNM	ChIP-seq	UBERON:0000473	testis	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF561ZZE, ENCFF990EXV	6455685	ENCODE Processing Pipeline	8c21cf6410066a2c361f5eb7b13e2c69		https://www.encodeproject.org/files/ENCFF146REQ/@@download/ENCFF146REQ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF415TPT	bed narrowPeak	peaks	ENCSR000EBQ	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				BACH1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF599MVB, ENCFF752RXF	4912372	ENCODE Processing Pipeline	b6972a9d10e24b86f551d68954cca3d2		https://www.encodeproject.org/files/ENCFF415TPT/@@download/ENCFF415TPT.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF483NEI	bed narrowPeak	peaks	ENCSR175SZH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZSCAN29-human	DNA					False	2016-10-31	ENCODE				1							ENCFF361VCB, ENCFF581ZJL	6513282	ENCODE Processing Pipeline	c770544017dc29caa52a24fae3ce7366		https://www.encodeproject.org/files/ENCFF483NEI/@@download/ENCFF483NEI.bed.gz	hg19			released	low read depth			
ENCFF333FVM	bed narrowPeak	peaks	ENCSR548DDS	ChIP-seq	UBERON:0000992	ovary	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-19	ENCODE				1							ENCFF725LQV, ENCFF798VAD	6421382	ENCODE Processing Pipeline	e2a6e8457cc22006e1706794d3c4662d		https://www.encodeproject.org/files/ENCFF333FVM/@@download/ENCFF333FVM.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF706VXW	bed narrowPeak	peaks	ENCSR757EMK	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				SUZ12-human	DNA					False	2017-05-17	ENCODE				1							ENCFF049MPQ, ENCFF445SJA, ENCFF583FAG	6867366	ENCODE Processing Pipeline	3d21eb7cc96e078e4d344741e79da651		https://www.encodeproject.org/files/ENCFF706VXW/@@download/ENCFF706VXW.bed.gz	hg19			released				
ENCFF916SIZ	bed narrowPeak	peaks	ENCSR813DCK	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SMAD1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF204LRJ, ENCFF941TZZ	5872937	ENCODE Processing Pipeline	014543a6096a1419451ccae73d845cfd		https://www.encodeproject.org/files/ENCFF916SIZ/@@download/ENCFF916SIZ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF495YBQ	bed narrowPeak	peaks	ENCSR580XUK	ChIP-seq	UBERON:0001323	tibial nerve	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF122EVJ	7049771	ENCODE Processing Pipeline	78e7fe8188e0d8b580593a3f90966bac		https://www.encodeproject.org/files/ENCFF495YBQ/@@download/ENCFF495YBQ.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF200AXJ	bed narrowPeak	peaks	ENCSR290QBB	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF076YOL	4381897	ENCODE Processing Pipeline	d32054bb514e263fe328dd9b6754b486		https://www.encodeproject.org/files/ENCFF200AXJ/@@download/ENCFF200AXJ.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF956UUX	bed narrowPeak	peaks	ENCSR072PWP	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF24-human	DNA					False	2017-06-26	ENCODE				1							ENCFF431JBK, ENCFF901CND	6387050	ENCODE Processing Pipeline	f841c981f589d266ef57754545a8a6f2		https://www.encodeproject.org/files/ENCFF956UUX/@@download/ENCFF956UUX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF997SXB	bed narrowPeak	peaks	ENCSR795IYP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				JUNB-human	DNA					False	2016-03-02	ENCODE				1							ENCFF061QOJ, ENCFF095BVD	5589037	ENCODE Processing Pipeline	decbba0f1d48cd087724ff92cac4575c		https://www.encodeproject.org/files/ENCFF997SXB/@@download/ENCFF997SXB.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF651APA	bed narrowPeak	peaks	ENCSR244ZAO	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF116QLL	6869935	ENCODE Processing Pipeline	005f800ce8193fa33ec1214886e6d4dc		https://www.encodeproject.org/files/ENCFF651APA/@@download/ENCFF651APA.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF874MIZ	bed narrowPeak	peaks	ENCSR346DKN	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF257LFE	6608434	ENCODE Processing Pipeline	bd356fdc391777a77a1c5fe4fb3c377a		https://www.encodeproject.org/files/ENCFF874MIZ/@@download/ENCFF874MIZ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF037OER	bed narrowPeak	peaks	ENCSR501LEH	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF540TEB	6381640	ENCODE Processing Pipeline	7d9497f3a57f423bbea4e87875962eb8		https://www.encodeproject.org/files/ENCFF037OER/@@download/ENCFF037OER.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF484FFL	bed narrowPeak	peaks	ENCSR432OIW	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF477OJL	6478668	ENCODE Processing Pipeline	a1f4e5f7bd44b1c1a53e806299af61df		https://www.encodeproject.org/files/ENCFF484FFL/@@download/ENCFF484FFL.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF167UCC	bed narrowPeak	peaks	ENCSR569SZK	ChIP-seq	UBERON:0001323	tibial nerve	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF295NCW, ENCFF418BQZ	6297643	ENCODE Processing Pipeline	76864e59ed124ab4e38fca8465287cc0		https://www.encodeproject.org/files/ENCFF167UCC/@@download/ENCFF167UCC.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			missing control alignments
ENCFF042IVB	bed narrowPeak	peaks	ENCSR862NOW	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF247QPH	5882012	ENCODE Processing Pipeline	e05bd21083630823c426aa307c5035f7		https://www.encodeproject.org/files/ENCFF042IVB/@@download/ENCFF042IVB.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF527RBD	bed narrowPeak	peaks	ENCSR799GOY	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				YBX1-human	DNA					False	2016-09-01	ENCODE				1							ENCFF449NNE, ENCFF449XWV	6353137	ENCODE Processing Pipeline	f1e171f6771702c5c096fcc70a65600a		https://www.encodeproject.org/files/ENCFF527RBD/@@download/ENCFF527RBD.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF563WGT	bed narrowPeak	peaks	ENCSR980OPB	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF489YYE	5389099	ENCODE Processing Pipeline	0f310cd34a9ae63e588e87d6d7495e81		https://www.encodeproject.org/files/ENCFF563WGT/@@download/ENCFF563WGT.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			missing control alignments
ENCFF142NKY	bed narrowPeak	peaks	ENCSR264RJX	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				POU5F1-human	DNA					False	2016-06-16	ENCODE				1							ENCFF017YFK, ENCFF799EWO	4723720	ENCODE Processing Pipeline	6214e16ca81f3b2d968f7a7bd1723571		https://www.encodeproject.org/files/ENCFF142NKY/@@download/ENCFF142NKY.bed.gz	hg19			released	low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF804ZDO	bed narrowPeak	peaks	ENCSR085DDI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFXL1-human	DNA					False	2016-12-05	ENCODE				1							ENCFF474PWT, ENCFF581ZJL	6601859	ENCODE Processing Pipeline	422447557aaa8aeac1f203d11e682a59		https://www.encodeproject.org/files/ENCFF804ZDO/@@download/ENCFF804ZDO.bed.gz	hg19			released				
ENCFF041YKU	bed narrowPeak	peaks	ENCSR304XUZ	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2016-10-25	ENCODE				1							ENCFF152VGP, ENCFF531FEB	6162798	ENCODE Processing Pipeline	95c7ae3bbbc4d9d94190649e99d2865d		https://www.encodeproject.org/files/ENCFF041YKU/@@download/ENCFF041YKU.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF447SAN	bed narrowPeak	peaks	ENCSR417DKD	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NFXL1-human	DNA					False	2017-06-07	ENCODE				1							ENCFF447KVS, ENCFF823USR, ENCFF891FAJ	6712500	ENCODE Processing Pipeline	a7548a30fb8493776cb82cc5dc6f7e59		https://www.encodeproject.org/files/ENCFF447SAN/@@download/ENCFF447SAN.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF518NZX	bed narrowPeak	peaks	ENCSR482PMN	ChIP-seq	UBERON:0002106	spleen	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF577BMV, ENCFF634EFZ	6113160	ENCODE Processing Pipeline	e92d03e16994aeef7e8dc54222eedb18		https://www.encodeproject.org/files/ENCFF518NZX/@@download/ENCFF518NZX.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF346PQE	bed narrowPeak	peaks	ENCSR932ZMX	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				CTCF-human	DNA					False	2016-06-30	ENCODE				1							ENCFF017YFK, ENCFF380SLU	4618205	ENCODE Processing Pipeline	ad133f9bd7f1ba8b63b9aff213a67e14		https://www.encodeproject.org/files/ENCFF346PQE/@@download/ENCFF346PQE.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption	NTR biosample		
ENCFF281EIU	bed narrowPeak	peaks	ENCSR303GFI	ChIP-seq	EFO:0002323	RWPE1	cell line	Homo sapiens				CTCF-human	DNA					False	2017-07-21	ENCODE				1							ENCFF536FQU, ENCFF731XOB, ENCFF834FWS	6800168	ENCODE Processing Pipeline	0fa72eaca56d79631ec62e41fa22699f		https://www.encodeproject.org/files/ENCFF281EIU/@@download/ENCFF281EIU.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF715OSJ	bed narrowPeak	peaks	ENCSR175FLL	ChIP-seq	UBERON:0001621	coronary artery	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF358FRE, ENCFF683KMT	6005721	ENCODE Processing Pipeline	452c1dfa172cd88e6593b974ca9487f3		https://www.encodeproject.org/files/ENCFF715OSJ/@@download/ENCFF715OSJ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption	experiment not submitted to GEO	severe bottlenecking	
ENCFF379YTS	bed narrowPeak	peaks	ENCSR817HTJ	ChIP-seq	CL:1001606	foreskin keratinocyte	primary cell	Homo sapiens				CTCF-human	DNA				formaldehyde	False	2017-10-10	GGR				1							ENCFF006FDF, ENCFF666SAQ	6094016	ENCODE Processing Pipeline	93a10bf39290950d81f25a84e4a14d41		https://www.encodeproject.org/files/ENCFF379YTS/@@download/ENCFF379YTS.bed.gz	hg19			released		experiment not submitted to GEO		
ENCFF965ZSK	bed narrowPeak	peaks	ENCSR147VKD	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF723ZTU	5086733	ENCODE Processing Pipeline	2c6ed487927383df49e0eafced44efb0		https://www.encodeproject.org/files/ENCFF965ZSK/@@download/ENCFF965ZSK.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF032HCI	bed narrowPeak	peaks	ENCSR353HEP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TARDBP-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF023YMB, ENCFF899VCS	5573738	ENCODE Processing Pipeline	d76d00eebebc49f8761c93cad455787a		https://www.encodeproject.org/files/ENCFF032HCI/@@download/ENCFF032HCI.bed.gz	hg19			released	low read depth			
ENCFF052CCG	bed narrowPeak	peaks	ENCSR286PCG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZBED1-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF016MFU, ENCFF023YMB, ENCFF578ISP	6399337	ENCODE Processing Pipeline	ea0184726994327edd2dadc7190bb8fe		https://www.encodeproject.org/files/ENCFF052CCG/@@download/ENCFF052CCG.bed.gz	hg19			released				
ENCFF025MTA	bed narrowPeak	peaks	ENCSR016UEH	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TARDBP-human	DNA		see document	see document		False	2016-11-08	ENCODE				1							ENCFF598WGZ, ENCFF787RYL, ENCFF991WDT	5657686	ENCODE Processing Pipeline	1332477ed89d41eeebcef99f85c146c5		https://www.encodeproject.org/files/ENCFF025MTA/@@download/ENCFF025MTA.bed.gz	hg19			released	borderline replicate concordance, low read depth			
ENCFF249NQH	bed narrowPeak	peaks	ENCSR721AHD	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF376VVJ, ENCFF460MTF	6701374	ENCODE Processing Pipeline	8df7318798834bbce0ce98192ccbd380		https://www.encodeproject.org/files/ENCFF249NQH/@@download/ENCFF249NQH.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF084ILX	bed narrowPeak	peaks	ENCSR411UYA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MTA2-human	DNA					False	2016-06-14	ENCODE				1							ENCFF063DLZ, ENCFF581ZJL	6667597	ENCODE Processing Pipeline	360bae6f96a56e295c8cf96a5d962f32		https://www.encodeproject.org/files/ENCFF084ILX/@@download/ENCFF084ILX.bed.gz	hg19			released				
ENCFF263MVV	bed narrowPeak	peaks	ENCSR408XTO	ChIP-seq	UBERON:0001150	body of pancreas	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF244RSE, ENCFF639BGL	5954022	ENCODE Processing Pipeline	c1d52c20c5dfa9e2c17b268a4a309f4a		https://www.encodeproject.org/files/ENCFF263MVV/@@download/ENCFF263MVV.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF993ZMK	bed narrowPeak	peaks	ENCSR300KUL	ChIP-seq	UBERON:0036149	suprapubic skin	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF734MVF	4865823	ENCODE Processing Pipeline	a0d59ab605d344fde3564f85bcc92357		https://www.encodeproject.org/files/ENCFF993ZMK/@@download/ENCFF993ZMK.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption			missing control alignments
ENCFF640NTC	bed narrowPeak	peaks	ENCSR704IJM	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF392TYJ	4311906	ENCODE Processing Pipeline	65048a4c70c6c1c54868134545226084		https://www.encodeproject.org/files/ENCFF640NTC/@@download/ENCFF640NTC.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF749ROX	bed narrowPeak	peaks	ENCSR428BKN	ChIP-seq	UBERON:0011907	gastrocnemius medialis	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF716USG, ENCFF941RBT	6757803	ENCODE Processing Pipeline	da994bad281aa7d2a9a58d49c59a1699		https://www.encodeproject.org/files/ENCFF749ROX/@@download/ENCFF749ROX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF969JFO	bed narrowPeak	peaks	ENCSR736ZKL	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-ZNF148-human	DNA				formaldehyde	False	2017-02-21	ENCODE				1							ENCFF182WHU, ENCFF212MCV	6816434	ENCODE Processing Pipeline	9297a582bb3420179db63f732866029e		https://www.encodeproject.org/files/ENCFF969JFO/@@download/ENCFF969JFO.bed.gz	hg19			released	missing genetic modification characterization			missing control alignments
ENCFF591HNR	bed narrowPeak	peaks	ENCSR829HTO	ChIP-seq	UBERON:0002367	prostate gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-29	ENCODE				1							ENCFF068ZJF, ENCFF234PLD	6061262	ENCODE Processing Pipeline	6efa100e6cc623afc54dcf99f03b75f8		https://www.encodeproject.org/files/ENCFF591HNR/@@download/ENCFF591HNR.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF266MOP	bed narrowPeak	peaks	ENCSR382PVA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				GTF2F1-human	DNA			SDS	formaldehyde	False	2017-02-27	ENCODE				1							ENCFF065JBC, ENCFF375WCZ	5105451	ENCODE Processing Pipeline	b4a399e5a8d27927a943d854366ed12e		https://www.encodeproject.org/files/ENCFF266MOP/@@download/ENCFF266MOP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF092GNG	bed narrowPeak	peaks	ENCSR618QYE	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF308BIP, ENCFF872MDZ	5203560	ENCODE Processing Pipeline	7b59c16851efa82e88aa0df8ed64ecdf		https://www.encodeproject.org/files/ENCFF092GNG/@@download/ENCFF092GNG.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF399TIE	bed narrowPeak	peaks	ENCSR028YEV	ChIP-seq	UBERON:0002106	spleen	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF230HKK, ENCFF569UCD	7083930	ENCODE Processing Pipeline	c902b02fece46d7fe330c058e041f453		https://www.encodeproject.org/files/ENCFF399TIE/@@download/ENCFF399TIE.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF363MKS	bed narrowPeak	peaks	ENCSR005LPI	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF062SIS, ENCFF204YUH	5172486	ENCODE Processing Pipeline	840c79f7b59445c33208261f59ed8b26		https://www.encodeproject.org/files/ENCFF363MKS/@@download/ENCFF363MKS.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF657HTU	bed narrowPeak	peaks	ENCSR790VEV	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF016BGY, ENCFF779DOP	5033900	ENCODE Processing Pipeline	b55057f4521fac98c567c3be33165252		https://www.encodeproject.org/files/ENCFF657HTU/@@download/ENCFF657HTU.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF111XHJ	bed narrowPeak	peaks	ENCSR337NQP	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ESRRA-human	DNA					False	2018-01-26	ENCODE				1							ENCFF583FAG, ENCFF877UQR	5892761	ENCODE Processing Pipeline	11545fe48811c23bdb63d0e4527d0074		https://www.encodeproject.org/files/ENCFF111XHJ/@@download/ENCFF111XHJ.bed.gz	hg19			released	borderline replicate concordance	experiment not submitted to GEO	partially characterized antibody	
ENCFF256VHD	bed narrowPeak	peaks	ENCSR960MDF	ChIP-seq	UBERON:0001496	ascending aorta	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF089ZLE, ENCFF840LTU	6076917	ENCODE Processing Pipeline	4864a2dbaf20706a0f16e60bfebca823		https://www.encodeproject.org/files/ENCFF256VHD/@@download/ENCFF256VHD.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF828HUH	bed narrowPeak	peaks	ENCSR856JJB	ChIP-seq	EFO:0007610	RWPE2	cell line	Homo sapiens				CTCF-human	DNA					False	2017-07-21	ENCODE				1							ENCFF225ESX, ENCFF240KUX, ENCFF564TQN	6890491	ENCODE Processing Pipeline	0f2ac077aab5dae5d0181d0a59da7483		https://www.encodeproject.org/files/ENCFF828HUH/@@download/ENCFF828HUH.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF039VDD	bed narrowPeak	peaks	ENCSR792IYC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BCLAF1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF264WWV, ENCFF581ZJL	5728057	ENCODE Processing Pipeline	0cca0ee2088dd951e375f9451e72b208		https://www.encodeproject.org/files/ENCFF039VDD/@@download/ENCFF039VDD.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance	experiment not submitted to GEO	partially characterized antibody	
ENCFF023UTX	bed narrowPeak	peaks	ENCSR116RGC	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF570ZQD	5068042	ENCODE Processing Pipeline	fea0552bff9a87aeebd12782368572a8		https://www.encodeproject.org/files/ENCFF023UTX/@@download/ENCFF023UTX.bed.gz	hg19			released	low read depth, antibody characterized with exemption			missing control alignments
ENCFF734XYJ	bed narrowPeak	peaks	ENCSR429CLV	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF098SJQ, ENCFF401DJS, ENCFF420OJT	6540954	ENCODE Processing Pipeline	fdb2f244a6d617aa57f75313327cd2e9		https://www.encodeproject.org/files/ENCFF734XYJ/@@download/ENCFF734XYJ.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF119UKJ	bed narrowPeak	peaks	ENCSR784VIQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NR2C1-human	DNA					False	2017-06-07	ENCODE				1							ENCFF126ECH, ENCFF901CND	5915378	ENCODE Processing Pipeline	bcb85655ff06ed19a2fc2aa516084aaf		https://www.encodeproject.org/files/ENCFF119UKJ/@@download/ENCFF119UKJ.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF399PWD	bed narrowPeak	peaks	ENCSR893WSB	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDAC2-human	DNA					False	2018-01-26	ENCODE				1							ENCFF304WKT, ENCFF581ZJL	7116658	ENCODE Processing Pipeline	45aaf01c6c66e2a1da2dd08eeffe4503		https://www.encodeproject.org/files/ENCFF399PWD/@@download/ENCFF399PWD.bed.gz	hg19			released	borderline replicate concordance	experiment not submitted to GEO	partially characterized antibody	
ENCFF875EQQ	bed narrowPeak	peaks	ENCSR476BQA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NONO-human	DNA					False	2017-02-01	ENCODE				1							ENCFF228PUZ, ENCFF449NNE	5572548	ENCODE Processing Pipeline	40fda2019f983361b3df27644ef4d7ab		https://www.encodeproject.org/files/ENCFF875EQQ/@@download/ENCFF875EQQ.bed.gz	hg19			released	borderline replicate concordance			
ENCFF945BEK	bed narrowPeak	peaks	ENCSR562NOP	ChIP-seq	EFO:0002167	DOHH2	cell line	Homo sapiens				EZH2phosphoT487-human	DNA		see document	see document		False	2017-01-31	ENCODE				1							ENCFF485TGQ, ENCFF548ADC, ENCFF815IAY	6466783	ENCODE Processing Pipeline	2ca64a8ab91602a3a67b28af44f89918		https://www.encodeproject.org/files/ENCFF945BEK/@@download/ENCFF945BEK.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths	NTR biosample		
ENCFF783CTL	bed narrowPeak	peaks	ENCSR620DUQ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CREB1-human	DNA					False	2017-09-28	ENCODE				1							ENCFF130QXF, ENCFF583FAG	6775719	ENCODE Processing Pipeline	bfd1a9f1978dd0fb81625c4d63561168		https://www.encodeproject.org/files/ENCFF783CTL/@@download/ENCFF783CTL.bed.gz	hg19			released				
ENCFF998YLT	bed narrowPeak	peaks	ENCSR027UFT	ChIP-seq	EFO:0006365	C4-2B	cell line	Homo sapiens				ZFX-human	DNA					False	2017-05-18	ENCODE				1							ENCFF704DUW, ENCFF801WHL, ENCFF923EBC	7288711	ENCODE Processing Pipeline	977a1ece93a9c9260888b2f6670b0017		https://www.encodeproject.org/files/ENCFF998YLT/@@download/ENCFF998YLT.bed.gz	hg19			released		NTR biosample		
ENCFF759LYG	bed narrowPeak	peaks	ENCSR196HOM	ChIP-seq	CL:0002231	epithelial cell of prostate	primary cell	Homo sapiens				CTCF-human	DNA					False	2017-06-23	ENCODE				1							ENCFF574AVO, ENCFF601MGR	6658556	ENCODE Processing Pipeline	6bf4ae8050845b3e67f3a7059e159a6d		https://www.encodeproject.org/files/ENCFF759LYG/@@download/ENCFF759LYG.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF011GSD	bed narrowPeak	peaks	ENCSR847XGE	ChIP-seq	EFO:0002095	22Rv1	cell line	Homo sapiens	17β-hydroxy-5α-androstan-3-one	10 nM	4 hour	CTCF-human	DNA					False	2017-06-29	ENCODE				1							ENCFF113PTE, ENCFF140MOX, ENCFF761NWZ	7009034	ENCODE Processing Pipeline	389d592272571e25cbc0a3b3aa6dead8		https://www.encodeproject.org/files/ENCFF011GSD/@@download/ENCFF011GSD.bed.gz	hg19			released	mild to moderate bottlenecking	NTR biosample		
ENCFF650KWX	bed narrowPeak	peaks	ENCSR015TKV	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				BCLAF1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF172XZA, ENCFF690ANL, ENCFF843IXX	6459142	ENCODE Processing Pipeline	d34a5afcdb811a6026d8aee7d8205db2		https://www.encodeproject.org/files/ENCFF650KWX/@@download/ENCFF650KWX.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF887ZYJ	bed narrowPeak	peaks	ENCSR248IMH	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NFRKB-human	DNA					False	2017-05-17	ENCODE				1							ENCFF401WQB, ENCFF447KVS, ENCFF823USR	6094838	ENCODE Processing Pipeline	6f4eaca3fabb58dbeafc24774a441249		https://www.encodeproject.org/files/ENCFF887ZYJ/@@download/ENCFF887ZYJ.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF956IFC	bed narrowPeak	peaks	ENCSR812FNU	ChIP-seq	CL:1001606	foreskin keratinocyte	primary cell	Homo sapiens	calcium	1.2 mM	5.5 day	CTCF-human	DNA				formaldehyde	False	2017-10-10	GGR				1							ENCFF697WPU, ENCFF877SGM	6353375	ENCODE Processing Pipeline	266359c5c10dd17de84f8ac02cbd4840		https://www.encodeproject.org/files/ENCFF956IFC/@@download/ENCFF956IFC.bed.gz	hg19			released		experiment not submitted to GEO		
ENCFF780FQB	bed narrowPeak	peaks	ENCSR460XGV	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MNT-human	DNA					False	2017-05-17	ENCODE				1							ENCFF447KVS, ENCFF554XHJ, ENCFF823USR	6517013	ENCODE Processing Pipeline	3f5be1ab94c5bb313152ebd9d77f9c8a		https://www.encodeproject.org/files/ENCFF780FQB/@@download/ENCFF780FQB.bed.gz	hg19			released				
ENCFF387NDE	bed narrowPeak	peaks	ENCSR807BGP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MTA1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF412LRS, ENCFF581ZJL	6967086	ENCODE Processing Pipeline	36aa5a16f94265a8106622b095f3da35		https://www.encodeproject.org/files/ENCFF387NDE/@@download/ENCFF387NDE.bed.gz	hg19			released	borderline replicate concordance			
ENCFF662PBM	bed narrowPeak	peaks	ENCSR528UBJ	ChIP-seq	UBERON:0008367	breast epithelium	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF214BIG	5508970	ENCODE Processing Pipeline	59ceb2705275ef86a80deae6ae72c4bb		https://www.encodeproject.org/files/ENCFF662PBM/@@download/ENCFF662PBM.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF395YWQ	bed narrowPeak	peaks	ENCSR362NWP	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZNF24-human	DNA					False	2017-06-26	ENCODE				1							ENCFF172XZA, ENCFF843IXX, ENCFF951PIU	6865411	ENCODE Processing Pipeline	1755cfb6a6cc560ae713cad3f2c0ae86		https://www.encodeproject.org/files/ENCFF395YWQ/@@download/ENCFF395YWQ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF569JWR	bed narrowPeak	peaks	ENCSR173ZVL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF592-human	DNA					False	2017-06-26	ENCODE				1							ENCFF873ZZW, ENCFF901CND	5807064	ENCODE Processing Pipeline	4dfaccae07a979933d1964cf64e81ddb		https://www.encodeproject.org/files/ENCFF569JWR/@@download/ENCFF569JWR.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF483EHQ	bed narrowPeak	peaks	ENCSR089DTY	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				CTCF-human	DNA					False	2017-06-23	ENCODE				1							ENCFF385SNU, ENCFF720JWD	5252425	ENCODE Processing Pipeline	6cb07ba566d736d39e27317f97de5023		https://www.encodeproject.org/files/ENCFF483EHQ/@@download/ENCFF483EHQ.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF245IPV	bed narrowPeak	peaks	ENCSR661XNQ	ChIP-seq	UBERON:0004550	gastroesophageal sphincter	tissue	Homo sapiens				CTCF-human	DNA					False	2017-06-23	ENCODE				1							ENCFF460DKV, ENCFF565VSK	6203883	ENCODE Processing Pipeline	486085900f1e799fbf005557f81f9503		https://www.encodeproject.org/files/ENCFF245IPV/@@download/ENCFF245IPV.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF881NRM	bed narrowPeak	peaks	ENCSR246MLJ	ChIP-seq	EFO:0002095	22Rv1	cell line	Homo sapiens				ZFX-human	DNA					False	2017-06-15	ENCODE				1							ENCFF113PTE, ENCFF761NWZ, ENCFF969MDP	7146794	ENCODE Processing Pipeline	0a9ec32727674760156f92ccc26d8b0e		https://www.encodeproject.org/files/ENCFF881NRM/@@download/ENCFF881NRM.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption	NTR biosample		
ENCFF641DSK	bed narrowPeak	peaks	ENCSR730TBC	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MNT-human	DNA					False	2017-06-07	ENCODE				1							ENCFF172XZA, ENCFF821WQW, ENCFF843IXX	7016527	ENCODE Processing Pipeline	dcff0e1646822b73b232b31bdb15533e		https://www.encodeproject.org/files/ENCFF641DSK/@@download/ENCFF641DSK.bed.gz	hg19			released				
ENCFF601WVR	bed narrowPeak	peaks	ENCSR725VFL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TCF12-human	DNA					False	2017-06-07	ENCODE				1							ENCFF455LNX, ENCFF901CND	5571610	ENCODE Processing Pipeline	b3900061f42ddea7742208c0ace9f16a		https://www.encodeproject.org/files/ENCFF601WVR/@@download/ENCFF601WVR.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF119DBB	bed narrowPeak	peaks	ENCSR608HVP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-KLF13-human	DNA					False	2016-03-02	ENCODE				1							ENCFF563OVT, ENCFF708ZXK	5808722	ENCODE Processing Pipeline	61b7ec4a83f998815e2e8b035034a85c		https://www.encodeproject.org/files/ENCFF119DBB/@@download/ENCFF119DBB.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, missing genetic modification characterization			
ENCFF930VYW	bed narrowPeak	peaks	ENCSR315NAC	ChIP-seq	EFO:0002071	LNCAP	cell line	Homo sapiens				CTCF-human	DNA					False	2017-06-29	ENCODE				1							ENCFF323QMI, ENCFF540UGI, ENCFF854RGJ	7094127	ENCODE Processing Pipeline	08c0ae92d291e5e5105db1a42cd2f62d		https://www.encodeproject.org/files/ENCFF930VYW/@@download/ENCFF930VYW.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF437EHR	bed narrowPeak	peaks	ENCSR503GVO	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				ZFX-human	DNA					False	2017-09-07	ENCODE				1							ENCFF856NHW, ENCFF939HKH, ENCFF959SRT	7173496	ENCODE Processing Pipeline	31d7c7670f8a008fd471db75b400eb57		https://www.encodeproject.org/files/ENCFF437EHR/@@download/ENCFF437EHR.bed.gz	hg19			released		NTR biosample		
ENCFF874IMP	bed narrowPeak	peaks	ENCSR839XZU	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CREM-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF500GPO, ENCFF787RYL, ENCFF991WDT	5824274	ENCODE Processing Pipeline	6027065cb694432f59cc9542acf08c01		https://www.encodeproject.org/files/ENCFF874IMP/@@download/ENCFF874IMP.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF508MRO	bed narrowPeak	peaks	ENCSR501DKS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TCF7-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF720HIA, ENCFF943IIV, ENCFF991WDT	5612436	ENCODE Processing Pipeline	9873663b99886607e58e6da699e5d349		https://www.encodeproject.org/files/ENCFF508MRO/@@download/ENCFF508MRO.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF851RZA	bed narrowPeak	peaks	ENCSR620VIC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-CEBPG-human	DNA					False	2016-06-13	ENCODE				1							ENCFF075EEP, ENCFF310DOA	6682206	ENCODE Processing Pipeline	714549be6e829c4e2ec9fc57bfc6d884		https://www.encodeproject.org/files/ENCFF851RZA/@@download/ENCFF851RZA.bed.gz	hg19			released	borderline replicate concordance, missing genetic modification characterization			
ENCFF927LSX	bed narrowPeak	peaks	ENCSR382WLL	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ELK1-human	DNA					False	2016-02-16	ENCODE				1							ENCFF157ZBY, ENCFF583FAG	5499758	ENCODE Processing Pipeline	05bea0f974f9c2d39c18beffcf55f243		https://www.encodeproject.org/files/ENCFF927LSX/@@download/ENCFF927LSX.bed.gz	hg19			released	borderline replicate concordance	duplicate lane review		
ENCFF856ZCX	bed narrowPeak	peaks	ENCSR186NVR	ChIP-seq	UBERON:0004550	gastroesophageal sphincter	tissue	Homo sapiens				CTCF-human	DNA					False	2017-06-23	ENCODE				1							ENCFF492MLX, ENCFF653KEU	6434619	ENCODE Processing Pipeline	2991024c9bb5f14ee8b65fdc0d7278af		https://www.encodeproject.org/files/ENCFF856ZCX/@@download/ENCFF856ZCX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF246HSO	bed narrowPeak	peaks	ENCSR925GDS	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF034SMD, ENCFF106RXX	6662756	ENCODE Processing Pipeline	75914ddd368c4257b7d42101e337ff94		https://www.encodeproject.org/files/ENCFF246HSO/@@download/ENCFF246HSO.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF817OVB	bed narrowPeak	peaks	ENCSR906UPC	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF515DIW	6077512	ENCODE Processing Pipeline	2fede9d02cf0ca5fc60ea7dbc30148c1		https://www.encodeproject.org/files/ENCFF817OVB/@@download/ENCFF817OVB.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF690XXK	bed narrowPeak	peaks	ENCSR047LSJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TAF15-human	DNA			SDS	formaldehyde	False	2017-02-27	ENCODE				1							ENCFF456BYT, ENCFF818HIH	5047502	ENCODE Processing Pipeline	fa771e766c74b2ac2c02538825850bed		https://www.encodeproject.org/files/ENCFF690XXK/@@download/ENCFF690XXK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity			
ENCFF739FWZ	bed narrowPeak	peaks	ENCSR360BLQ	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF677JZD	6349292	ENCODE Processing Pipeline	22d0680342d65f727917705d65ed0e92		https://www.encodeproject.org/files/ENCFF739FWZ/@@download/ENCFF739FWZ.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF495TAN	bed narrowPeak	peaks	ENCSR923WJS	ChIP-seq	UBERON:0001159	sigmoid colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF446NOX	6487954	ENCODE Processing Pipeline	423ecba64b2025257934b472c14c76ad		https://www.encodeproject.org/files/ENCFF495TAN/@@download/ENCFF495TAN.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF571CAU	bed narrowPeak	peaks	ENCSR088VUG	ChIP-seq	UBERON:0004550	gastroesophageal sphincter	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF150JKN	5928073	ENCODE Processing Pipeline	f43861ef67f10c5c21e74e201183cecb		https://www.encodeproject.org/files/ENCFF571CAU/@@download/ENCFF571CAU.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF671OVE	bed narrowPeak	peaks	ENCSR979QYJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MNT-human	DNA					False	2017-01-27	ENCODE				1							ENCFF117LCX, ENCFF160VXC	7000743	ENCODE Processing Pipeline	6128a1faa54737510c43c78ce33a8341		https://www.encodeproject.org/files/ENCFF671OVE/@@download/ENCFF671OVE.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF040LOQ	bed narrowPeak	peaks	ENCSR828NCB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				GATAD2B-human	DNA					False	2017-05-17	ENCODE				1							ENCFF699MBA, ENCFF901CND	6545854	ENCODE Processing Pipeline	e0d3f12c791753d1349de45edbfde9f7		https://www.encodeproject.org/files/ENCFF040LOQ/@@download/ENCFF040LOQ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF943NIH	bed narrowPeak	peaks	ENCSR509FWH	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				DPF2-human	DNA					False	2017-05-17	ENCODE				1							ENCFF437AZE, ENCFF901CND	6948107	ENCODE Processing Pipeline	f702ceabbaa2e142282da390c2da8676		https://www.encodeproject.org/files/ENCFF943NIH/@@download/ENCFF943NIH.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF472SCD	bed narrowPeak	peaks	ENCSR011PEI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-ZNF175-human	DNA					False	2016-06-13	ENCODE				1							ENCFF243GPO, ENCFF538HUN	6005884	ENCODE Processing Pipeline	2bab94bc6306c9d1f5743617b8c62493		https://www.encodeproject.org/files/ENCFF472SCD/@@download/ENCFF472SCD.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking, low read depth, missing genetic modification characterization			
ENCFF865JLD	bed narrowPeak	peaks	ENCSR894QWM	ChIP-seq	EFO:0005724	MM.1S	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF269HDS, ENCFF824DBS	6347524	ENCODE Processing Pipeline	93c75697dd790cd31be052533d3dbd00		https://www.encodeproject.org/files/ENCFF865JLD/@@download/ENCFF865JLD.bed.gz	hg19			released	low read length, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF491EBX	bed narrowPeak	peaks	ENCSR502NRF	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ELF1-human	DNA					False	2017-06-26	ENCODE				1							ENCFF367GNZ, ENCFF447KVS, ENCFF823USR	6750514	ENCODE Processing Pipeline	f4b3cc54b6e1478e33664fd3ebb609ec		https://www.encodeproject.org/files/ENCFF491EBX/@@download/ENCFF491EBX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF847LNA	bed narrowPeak	peaks	ENCSR706BJO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				eGFP-ZBTB11-human	DNA					False	2016-06-13	ENCODE				1							ENCFF359SKD, ENCFF434TTY	7055585	ENCODE Processing Pipeline	0db6cf378fe8914bdee0eeae2d02fc08		https://www.encodeproject.org/files/ENCFF847LNA/@@download/ENCFF847LNA.bed.gz	hg19			released	missing genetic modification characterization			
ENCFF311GKF	bed narrowPeak	peaks	ENCSR096KPA	ChIP-seq	EFO:0005723	GM23248	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-03-04	ENCODE				1							ENCFF111AMD, ENCFF394XKE, ENCFF692DPL	5869158	ENCODE Processing Pipeline	6beb95c44ba95c65859c201055626a31		https://www.encodeproject.org/files/ENCFF311GKF/@@download/ENCFF311GKF.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	insufficient read depth	
ENCFF770CIC	bed narrowPeak	peaks	ENCSR000EEG	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				RAD21-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF240KTH	4761321	ENCODE Processing Pipeline	8dbfb82d2a2a6c762ceab2ccaeff03c1		https://www.encodeproject.org/files/ENCFF770CIC/@@download/ENCFF770CIC.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF982ZRX	bed narrowPeak	peaks	ENCSR091BOQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SUZ12-human	DNA					False	2018-01-17	ENCODE				1							ENCFF468GSD, ENCFF602SNK	5550435	ENCODE Processing Pipeline	5daee905a3ddafa7c63f59aef3bca91a		https://www.encodeproject.org/files/ENCFF982ZRX/@@download/ENCFF982ZRX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	experiment not submitted to GEO	unreplicated experiment	
ENCFF727PSQ	bed narrowPeak	peaks	ENCSR278JQG	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				IKZF1-human	DNA					False	2016-06-14	ENCODE				1							ENCFF449NNE, ENCFF486FNI	6123997	ENCODE Processing Pipeline	5c8a819ec0816afec60033107aae642a		https://www.encodeproject.org/files/ENCFF727PSQ/@@download/ENCFF727PSQ.bed.gz	hg19			released	borderline replicate concordance			
ENCFF303UAB	bed narrowPeak	peaks	ENCSR000DRZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF607GOG, ENCFF892TNJ	1748719	ENCODE Processing Pipeline	b63e8c0ee9f5f7eb5feb22f98c885a56		https://www.encodeproject.org/files/ENCFF303UAB/@@download/ENCFF303UAB.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth			extremely low read depth
ENCFF697TMT	bed narrowPeak	peaks	ENCSR389BLX	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				GATAD2B-human	DNA					False	2016-10-26	ENCODE				1							ENCFF326PVE, ENCFF447KVS, ENCFF823USR	6795165	ENCODE Processing Pipeline	90199c725555873d557f11cf1b75fe36		https://www.encodeproject.org/files/ENCFF697TMT/@@download/ENCFF697TMT.bed.gz	hg19			released				
ENCFF140XPK	bed narrowPeak	peaks	ENCSR000EGE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				EP300-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF703ULA, ENCFF710NTS	5254759	ENCODE Processing Pipeline	5da407a55ac8e67282768fa2dafa3448		https://www.encodeproject.org/files/ENCFF140XPK/@@download/ENCFF140XPK.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF009PGQ	bed narrowPeak	peaks	ENCSR412CTM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SUZ12-human	DNA					False	2016-06-14	ENCODE				1							ENCFF193XPY, ENCFF335IPE	5075484	ENCODE Processing Pipeline	f52779d780056f5dbc75289ced0e3718		https://www.encodeproject.org/files/ENCFF009PGQ/@@download/ENCFF009PGQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance			
ENCFF072ERX	bed narrowPeak	peaks	ENCSR240XWM	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				LEF1-human	DNA					False	2017-04-14	ENCODE				1							ENCFF529BVI, ENCFF761PRG, ENCFF772FBN	6361672	ENCODE Processing Pipeline	a91cd3e86e942cc12b8d9c2ee427e2a0		https://www.encodeproject.org/files/ENCFF072ERX/@@download/ENCFF072ERX.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF736SWB	bed narrowPeak	peaks	ENCSR591EBL	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NBN-human	DNA					False	2016-09-20	ENCODE				1							ENCFF187GJJ, ENCFF447KVS, ENCFF823USR	6752970	ENCODE Processing Pipeline	58930d20f2e017b4e6d25187bb6a6797		https://www.encodeproject.org/files/ENCFF736SWB/@@download/ENCFF736SWB.bed.gz	hg19			released	file validation error	mismatched file status		
ENCFF803HUJ	bed narrowPeak	peaks	ENCSR000DLK	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF199MPO, ENCFF325QRE	1318856	ENCODE Processing Pipeline	8f5bf2f5b92b134ef4645a547364f639		https://www.encodeproject.org/files/ENCFF803HUJ/@@download/ENCFF803HUJ.bed.gz	hg19			released	low read length		insufficient read depth	control extremely low read depth
ENCFF131TVY	bed narrowPeak	peaks	ENCSR341VYI	ChIP-seq	CL:0000182	hepatocyte	in vitro differentiated cells	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-24	ENCODE				1							ENCFF019LID, ENCFF812MYK	5502216	ENCODE Processing Pipeline	b4632ee0e74a03f71d25d7e8005072d9		https://www.encodeproject.org/files/ENCFF131TVY/@@download/ENCFF131TVY.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment, severe bottlenecking	
ENCFF420XDI	bed narrowPeak	peaks	ENCSR522LDJ	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				HDGF-human	DNA					False	2017-04-14	ENCODE				1							ENCFF529BVI, ENCFF772FBN, ENCFF950TOD	6667865	ENCODE Processing Pipeline	9ec7ca1566919e30b2841a7725753218		https://www.encodeproject.org/files/ENCFF420XDI/@@download/ENCFF420XDI.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			
ENCFF215LEX	bed narrowPeak	peaks	ENCSR555PBN	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MAFK-human	DNA					False	2014-07-07	ENCODE				1							ENCFF086KKL, ENCFF583FAG	5904944	ENCODE Processing Pipeline	3b1deac1417cad3a3bbfa2e30cf99293		https://www.encodeproject.org/files/ENCFF215LEX/@@download/ENCFF215LEX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	experiment not submitted to GEO	partially characterized antibody	
ENCFF369GTZ	bed narrowPeak	peaks	ENCSR683CSF	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZNF207-human	DNA					False	2016-09-20	ENCODE				1							ENCFF172XZA, ENCFF843IXX, ENCFF849SYR	7087951	ENCODE Processing Pipeline	ff4d1db30a92eec13493cd4d147e5046		https://www.encodeproject.org/files/ENCFF369GTZ/@@download/ENCFF369GTZ.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF035JZF	bed narrowPeak	peaks	ENCSR103GAK	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-ZNF175-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF060NHQ	6304742	ENCODE Processing Pipeline	7431ea9ad18110b56a5e7431e0963373		https://www.encodeproject.org/files/ENCFF035JZF/@@download/ENCFF035JZF.bed.gz	hg19			released	borderline replicate concordance, missing genetic modification characterization			missing control alignments
ENCFF795PEX	bed narrowPeak	peaks	ENCSR874AFU	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				IKZF1-human	DNA					False	2016-09-20	ENCODE				1							ENCFF592WAL, ENCFF648SPM, ENCFF901CND	6957758	ENCODE Processing Pipeline	b0c8e8e73bfd433eeb683f077d853aca		https://www.encodeproject.org/files/ENCFF795PEX/@@download/ENCFF795PEX.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF116JZW	bed narrowPeak	peaks	ENCSR137ZMQ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				REST-human	DNA					False	2014-07-07	ENCODE				1							ENCFF581ZJL, ENCFF686NWE	6978919	ENCODE Processing Pipeline	cf5c9590a33d846f803d14df40f54a91		https://www.encodeproject.org/files/ENCFF116JZW/@@download/ENCFF116JZW.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF821KSJ	bed narrowPeak	peaks	ENCSR419ANE	ChIP-seq	UBERON:0001211	Peyer's patch	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF025ZGL, ENCFF888YHU	6191786	ENCODE Processing Pipeline	1f024425ec70161ea3fd9530da6147ad		https://www.encodeproject.org/files/ENCFF821KSJ/@@download/ENCFF821KSJ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF556TCV	bed narrowPeak	peaks	ENCSR545FXC	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ATF7-human	DNA					False	2016-07-08	ENCODE				1							ENCFF449NNE, ENCFF459NAB	6744246	ENCODE Processing Pipeline	5c91e4ec268e116bfae760f3b6477315		https://www.encodeproject.org/files/ENCFF556TCV/@@download/ENCFF556TCV.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF218RJK	bed narrowPeak	peaks	ENCSR563LLO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				E2F1-human	DNA					False	2016-07-08	ENCODE				1							ENCFF483UIU, ENCFF581ZJL	6233227	ENCODE Processing Pipeline	90c9ab711eba70a009b0589ea7057131		https://www.encodeproject.org/files/ENCFF218RJK/@@download/ENCFF218RJK.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF922CFN	bed narrowPeak	peaks	ENCSR636EYA	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTBP1-human	DNA					False	2016-04-21	ENCODE				1							ENCFF583FAG, ENCFF678DEO	6652068	ENCODE Processing Pipeline	022c23594bf8b149ec691c1c27b42169		https://www.encodeproject.org/files/ENCFF922CFN/@@download/ENCFF922CFN.bed.gz	hg19			released				
ENCFF433ANO	bed narrowPeak	peaks	ENCSR780BBJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZZZ3-human	DNA					False	2016-12-05	ENCODE				1							ENCFF066EHS, ENCFF834TUP	7144829	ENCODE Processing Pipeline	fe359d4ff2dce87656e7ebd6b6d138ba		https://www.encodeproject.org/files/ENCFF433ANO/@@download/ENCFF433ANO.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption			
ENCFF008XTO	bed narrowPeak	peaks	ENCSR041AXL	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				RFX1-human	DNA					False	2016-06-23	ENCODE				1							ENCFF581ZJL, ENCFF862UZN	6606736	ENCODE Processing Pipeline	f35483d19c4445bdeed1b505251a418e		https://www.encodeproject.org/files/ENCFF008XTO/@@download/ENCFF008XTO.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF593KRH	bed narrowPeak	peaks	ENCSR293QAR	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MTA2-human	DNA					False	2016-09-20	ENCODE				1							ENCFF592WAL, ENCFF901CND, ENCFF975GPP	7255853	ENCODE Processing Pipeline	18235deea7ec222cc38f7cf3a732ed11		https://www.encodeproject.org/files/ENCFF593KRH/@@download/ENCFF593KRH.bed.gz	hg19			released	file validation error, mild to moderate bottlenecking, low read depth, moderate library complexity	mismatched file status		
ENCFF482XGS	bed narrowPeak	peaks	ENCSR384LYW	ChIP-seq	CL:0000182	hepatocyte	in vitro differentiated cells	Homo sapiens				EZH2-human	DNA					False	2016-11-23	ENCODE				1							ENCFF579XSU, ENCFF812MYK, ENCFF831TJC	6898050	ENCODE Processing Pipeline	d2cec1c222fd66ebdf12467db2696c8c		https://www.encodeproject.org/files/ENCFF482XGS/@@download/ENCFF482XGS.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption	NTR biosample		
ENCFF572LJS	bed narrowPeak	peaks	ENCSR923UTX	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NONO-human	DNA			SDS	formaldehyde	False	2017-08-17	ENCODE				1							ENCFF217UCE, ENCFF701CVL, ENCFF825CNQ	5922579	ENCODE Processing Pipeline	1454a7a287c40636c34edc8d71f040e4		https://www.encodeproject.org/files/ENCFF572LJS/@@download/ENCFF572LJS.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF921NFP	bed narrowPeak	peaks	ENCSR332EYT	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				STAT1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF895RMY, ENCFF941TZZ	6110753	ENCODE Processing Pipeline	e52657fac40c5ac9a2b369de1e79ef29		https://www.encodeproject.org/files/ENCFF921NFP/@@download/ENCFF921NFP.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption			
ENCFF244PNH	bed narrowPeak	peaks	ENCSR841NDX	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ELF1-human	DNA					False	2017-06-26	ENCODE				1							ENCFF560XEW, ENCFF592WAL, ENCFF901CND	6962772	ENCODE Processing Pipeline	a597a04e19cbee928bc7ce829def9157		https://www.encodeproject.org/files/ENCFF244PNH/@@download/ENCFF244PNH.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF286IKG	bed narrowPeak	peaks	ENCSR727HME	ChIP-seq	UBERON:0004264	lower leg skin	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF007DFB, ENCFF075IXF	4762875	ENCODE Processing Pipeline	3c4f7710d70c86e7f07f5e0bf9a8294e		https://www.encodeproject.org/files/ENCFF286IKG/@@download/ENCFF286IKG.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF562GBY	bed narrowPeak	peaks	ENCSR789GVU	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				BHLHE40-human	DNA					False	2016-11-18	ENCODE				1							ENCFF095FXN, ENCFF529BVI, ENCFF772FBN	6697088	ENCODE Processing Pipeline	6f7fb53ffc5ac5a571fd5178be77b46d		https://www.encodeproject.org/files/ENCFF562GBY/@@download/ENCFF562GBY.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	duplicate lane review		
ENCFF657QUD	bed narrowPeak	peaks	ENCSR145CXH	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TARDBP-human	DNA			SDS	formaldehyde	False	2017-12-01	ENCODE				1							ENCFF135XJA, ENCFF500AAN	5724174	ENCODE Processing Pipeline	befd04f20d78959ba8db1b890bd3a422		https://www.encodeproject.org/files/ENCFF657QUD/@@download/ENCFF657QUD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance	experiment not submitted to GEO		
ENCFF569FCI	bed narrowPeak	peaks	ENCSR062HDL	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				HSF1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF583FAG, ENCFF635JVW	5472948	ENCODE Processing Pipeline	6752348e3499f5f3c9d5448f9d2a13e0		https://www.encodeproject.org/files/ENCFF569FCI/@@download/ENCFF569FCI.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF313BLC	bed narrowPeak	peaks	ENCSR101FJU	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZNF384-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF863VMN, ENCFF993IXQ	4894675	ENCODE Processing Pipeline	8f84cbba7c25553b0ad77c3c82f8db38		https://www.encodeproject.org/files/ENCFF313BLC/@@download/ENCFF313BLC.bed.gz	hg19			released	low read length			
ENCFF329QXP	bed narrowPeak	peaks	ENCSR841YWU	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				E4F1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF583FAG, ENCFF805PAZ	5909311	ENCODE Processing Pipeline	561ffac6c621f1477c7d50cd2543cd4c		https://www.encodeproject.org/files/ENCFF329QXP/@@download/ENCFF329QXP.bed.gz	hg19			released		experiment not submitted to GEO	partially characterized antibody	
ENCFF536TDH	bed narrowPeak	peaks	ENCSR785YRL	ChIP-seq	CL:0000775	neutrophil	primary cell	Homo sapiens				CTCF-human	DNA					False	2016-12-01	ENCODE				1							ENCFF087GJL, ENCFF092HKY, ENCFF365YNJ	5644080	ENCODE Processing Pipeline	05b105e77069b9e7001308767202f8e7		https://www.encodeproject.org/files/ENCFF536TDH/@@download/ENCFF536TDH.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample		
ENCFF224GWU	bed narrowPeak	peaks	ENCSR970NKQ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR2F1-human	DNA					False	2016-06-14	ENCODE				1							ENCFF056YEU, ENCFF581ZJL	6885777	ENCODE Processing Pipeline	70192d3307157e7e26c82dba98d77c9d		https://www.encodeproject.org/files/ENCFF224GWU/@@download/ENCFF224GWU.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF656XHS	bed narrowPeak	peaks	ENCSR793USK	ChIP-seq	EFO:0002847	PC-9	cell line	Homo sapiens				EZH2-human	DNA					False	2017-11-13	ENCODE				1							ENCFF567WDW, ENCFF618RNL, ENCFF753PRR	7090119	ENCODE Processing Pipeline	b2f915ba9058099b44bb9cf8e4072517		https://www.encodeproject.org/files/ENCFF656XHS/@@download/ENCFF656XHS.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption	experiment not submitted to GEO		
ENCFF734SUP	bed narrowPeak	peaks	ENCSR638QHV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ELF4-human	DNA					False	2017-01-31	ENCODE				1							ENCFF105XTZ, ENCFF581ZJL	6729307	ENCODE Processing Pipeline	74392f29101d939774a874931fce12b7		https://www.encodeproject.org/files/ENCFF734SUP/@@download/ENCFF734SUP.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF557POD	bed narrowPeak	peaks	ENCSR234VCE	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				DPF2-human	DNA					False	2016-04-22	ENCODE				1							ENCFF583FAG, ENCFF931KUQ	6357566	ENCODE Processing Pipeline	42a0cf28f4093b9795357387a02eeeed		https://www.encodeproject.org/files/ENCFF557POD/@@download/ENCFF557POD.bed.gz	hg19			released				
ENCFF595WOT	bed narrowPeak	peaks	ENCSR176EXN	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				JUN-human	DNA					False	2014-07-07	ENCODE				1							ENCFF583FAG, ENCFF931IXW	5473895	ENCODE Processing Pipeline	b391f82d53c85e2ef3dee4acadb133f6		https://www.encodeproject.org/files/ENCFF595WOT/@@download/ENCFF595WOT.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF920IJY	bed narrowPeak	peaks	ENCSR211LTF	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				EGR1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF065XRG, ENCFF581ZJL	6522057	ENCODE Processing Pipeline	5eabd6928477c3a58ca0ae21b1f17a75		https://www.encodeproject.org/files/ENCFF920IJY/@@download/ENCFF920IJY.bed.gz	hg19			released	low read depth			
ENCFF768FVV	bed narrowPeak	peaks	ENCSR934NHU	ChIP-seq	CL:0002319	neural cell	in vitro differentiated cells	Homo sapiens				MXI1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF080XQT, ENCFF456TDF, ENCFF980CFV	6686837	ENCODE Processing Pipeline	d1b971ba40165b17e58124ce9b7d7255		https://www.encodeproject.org/files/ENCFF768FVV/@@download/ENCFF768FVV.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF096VAL	bed narrowPeak	peaks	ENCSR729LGA	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				SP1-human	DNA					False	2016-09-01	ENCODE				1							ENCFF007UHY, ENCFF583FAG	6055216	ENCODE Processing Pipeline	d10dce3423158564b44ccee7081d5b39		https://www.encodeproject.org/files/ENCFF096VAL/@@download/ENCFF096VAL.bed.gz	hg19			released				
ENCFF426TDF	bed narrowPeak	peaks	ENCSR345YWJ	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				ZBTB33-human	DNA					False	2016-09-23	ENCODE				1							ENCFF654EHF, ENCFF678QLX, ENCFF991UTU	5381827	ENCODE Processing Pipeline	daf1fd78cb74d49c5226bafe1b0e4abe		https://www.encodeproject.org/files/ENCFF426TDF/@@download/ENCFF426TDF.bed.gz	hg19			released	borderline replicate concordance, low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF455ZJN	bed narrowPeak	peaks	ENCSR611JJS	ChIP-seq	EFO:0002106	A673	cell line	Homo sapiens				CTCF-human	DNA					False	2017-11-13	ENCODE				1							ENCFF042EJM, ENCFF053FUQ, ENCFF705RUU	6363815	ENCODE Processing Pipeline	112873223dadbbd97b72279adcfadf15		https://www.encodeproject.org/files/ENCFF455ZJN/@@download/ENCFF455ZJN.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF759MWN	bed narrowPeak	peaks	ENCSR869IUD	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ATF2-human	DNA					False	2016-07-08	ENCODE				1							ENCFF085AZW, ENCFF581ZJL	6464456	ENCODE Processing Pipeline	3e6b7da4081d167ce8628755eb7f42ae		https://www.encodeproject.org/files/ENCFF759MWN/@@download/ENCFF759MWN.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF567WYM	bed narrowPeak	peaks	ENCSR198ZYJ	ChIP-seq	CL:0002319	neural cell	in vitro differentiated cells	Homo sapiens				RAD21-human	DNA					False	2014-07-07	ENCODE				1							ENCFF077BZZ, ENCFF080XQT, ENCFF980CFV	6808638	ENCODE Processing Pipeline	8ddf8c10ad5bc526cf954e7831740a35		https://www.encodeproject.org/files/ENCFF567WYM/@@download/ENCFF567WYM.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF113ZZY	bed narrowPeak	peaks	ENCSR819LHG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				FOXA1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF262CJE, ENCFF506DFV, ENCFF926PMG	6362678	ENCODE Processing Pipeline	00f61c261bb370338c498caa0b167c0f		https://www.encodeproject.org/files/ENCFF113ZZY/@@download/ENCFF113ZZY.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF708ZIZ	bed narrowPeak	peaks	ENCSR125DKL	ChIP-seq	EFO:0002357	SU-DHL-6	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-11-29	ENCODE				1							ENCFF199IID, ENCFF349UGY, ENCFF408JOT	6590604	ENCODE Processing Pipeline	15e010e44a5aeebdda732146a668ae15		https://www.encodeproject.org/files/ENCFF708ZIZ/@@download/ENCFF708ZIZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF294PGV	bed narrowPeak	peaks	ENCSR408JQO	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				IRF3-human	DNA					False	2014-07-07	ENCODE				1							ENCFF288FXI, ENCFF941TZZ	5612376	ENCODE Processing Pipeline	0b23ee499ba75b482e1616b4acba89ad		https://www.encodeproject.org/files/ENCFF294PGV/@@download/ENCFF294PGV.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF589OJB	bed narrowPeak	peaks	ENCSR591DTH	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF269ZDG, ENCFF338XLV	7117810	ENCODE Processing Pipeline	e6ab79b079eb97147209daee8a2e759b		https://www.encodeproject.org/files/ENCFF589OJB/@@download/ENCFF589OJB.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment	
ENCFF373WLW	bed narrowPeak	peaks	ENCSR000BRR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				STAT5A-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF448TVU, ENCFF522HDC, ENCFF727JYL	6224554	ENCODE Processing Pipeline	63cf6cc7aeb614a2c75208157d5e59db		https://www.encodeproject.org/files/ENCFF373WLW/@@download/ENCFF373WLW.bed.gz	hg19			released	low read length, borderline replicate concordance, inconsistent platforms	biological replicates with identical biosample		
ENCFF505URD	bed narrowPeak	peaks	ENCSR613NUC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ARNT-human	DNA					False	2016-12-19	ENCODE				1							ENCFF581ZJL, ENCFF948XRU	7107880	ENCODE Processing Pipeline	daaf9e7a697b0d64edcb01c4a0f21f2a		https://www.encodeproject.org/files/ENCFF505URD/@@download/ENCFF505URD.bed.gz	hg19			released				
ENCFF578FSD	bed narrowPeak	peaks	ENCSR430YRJ	ChIP-seq	EFO:0005694	KMS-11	cell line	Homo sapiens				CTCF-human	DNA					False	2017-11-13	ENCODE				1							ENCFF289HRS, ENCFF668YCW	6174240	ENCODE Processing Pipeline	62dc1a5f5f88c297692e2532567a200b		https://www.encodeproject.org/files/ENCFF578FSD/@@download/ENCFF578FSD.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF459CAS	bed narrowPeak	peaks	ENCSR084RDK	ChIP-seq	EFO:0002167	DOHH2	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2014-07-11	ENCODE				1							ENCFF548ADC, ENCFF555IHR	5342620	ENCODE Processing Pipeline	f5df4923584165f94918c3d895af839e		https://www.encodeproject.org/files/ENCFF459CAS/@@download/ENCFF459CAS.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption	NTR biosample	poor library complexity, severe bottlenecking	
ENCFF805GLK	bed narrowPeak	peaks	ENCSR218QFN	ChIP-seq	EFO:0002074	PC-3	cell line	Homo sapiens				EZH2-human	DNA					False	2017-12-14	ENCODE				1							ENCFF112OEB, ENCFF845BWF	7288365	ENCODE Processing Pipeline	6af28e9ce041e7a432a569fc7f4b5df3		https://www.encodeproject.org/files/ENCFF805GLK/@@download/ENCFF805GLK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, antibody characterized with exemption	experiment not submitted to GEO	unreplicated experiment	
ENCFF940YUU	bed narrowPeak	peaks	ENCSR957KYB	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				BHLHE40-human	DNA					False	2016-09-01	ENCODE				1							ENCFF880YHS, ENCFF908WOK	4968280	ENCODE Processing Pipeline	d080f2ccbe78c1f590ac6e61bbf7cb42		https://www.encodeproject.org/files/ENCFF940YUU/@@download/ENCFF940YUU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	duplicate lane review		
ENCFF023VOJ	bed narrowPeak	peaks	ENCSR715CCR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				DPF2-human	DNA					False	2016-04-22	ENCODE				1							ENCFF419BCJ, ENCFF581ZJL	7181376	ENCODE Processing Pipeline	3083a486dc1b0b3129c6eff438f6bf88		https://www.encodeproject.org/files/ENCFF023VOJ/@@download/ENCFF023VOJ.bed.gz	hg19			released				
ENCFF126HBJ	bed narrowPeak	peaks	ENCSR488EES	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NFE2L2-human	DNA					False	2014-07-07	ENCODE				1							ENCFF863VMN, ENCFF876KIY	4458692	ENCODE Processing Pipeline	17a38a6848d9b81c86be2db1ef3fc780		https://www.encodeproject.org/files/ENCFF126HBJ/@@download/ENCFF126HBJ.bed.gz	hg19			released	low read length			
ENCFF742SNU	bed narrowPeak	peaks	ENCSR189YYK	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZBTB40-human	DNA					False	2016-09-20	ENCODE				1							ENCFF744LEM, ENCFF901CND	6734314	ENCODE Processing Pipeline	c3c0bbc1f7fd34c2c4379c80b20493de		https://www.encodeproject.org/files/ENCFF742SNU/@@download/ENCFF742SNU.bed.gz	hg19			released	file validation error, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity	mismatched file status		
ENCFF953EDE	bed narrowPeak	peaks	ENCSR481YWD	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				SMC3-human	DNA					False	2016-10-31	ENCODE				1							ENCFF863STQ, ENCFF975XPX	4300896	ENCODE Processing Pipeline	cf5b822eccb06180019cbe5566d2f288		https://www.encodeproject.org/files/ENCFF953EDE/@@download/ENCFF953EDE.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF269OJD	bed narrowPeak	peaks	ENCSR991ELG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SP1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF545HSY, ENCFF581ZJL	6428918	ENCODE Processing Pipeline	acb90b1069557278322f26bf973da922		https://www.encodeproject.org/files/ENCFF269OJD/@@download/ENCFF269OJD.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF983BJS	bed narrowPeak	peaks	ENCSR125NBL	ChIP-seq	NTR:0000711	neural progenitor cell	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA					False	2017-10-19	ENCODE				1							ENCFF387KXA, ENCFF748HWO, ENCFF762JSN	6641165	ENCODE Processing Pipeline	1d029aa74a6edd58f48d9d753a509270		https://www.encodeproject.org/files/ENCFF983BJS/@@download/ENCFF983BJS.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF355WZV	bed narrowPeak	peaks	ENCSR703KWN	ChIP-seq	EFO:0005724	MM.1S	cell line	Homo sapiens				EZH2-human	DNA					False	2017-12-14	ENCODE				1							ENCFF429JNW, ENCFF824DBS	5951394	ENCODE Processing Pipeline	689bcd85a94bdcbb93b8f94da9322e50		https://www.encodeproject.org/files/ENCFF355WZV/@@download/ENCFF355WZV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths	experiment not submitted to GEO		
ENCFF614ENJ	bed narrowPeak	peaks	ENCSR753GIA	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				TARDBP-human	DNA					False	2016-11-17	ENCODE				1							ENCFF040GAR, ENCFF159EUB, ENCFF760DHW	6579704	ENCODE Processing Pipeline	9465af03f82d46961a8ef03e93362fa2		https://www.encodeproject.org/files/ENCFF614ENJ/@@download/ENCFF614ENJ.bed.gz	hg19			released				
ENCFF893LMP	bed narrowPeak	peaks	ENCSR000BQF	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF725UGE, ENCFF916OWO	4034357	ENCODE Processing Pipeline	a02fa2ebee5f917703c8f1c8cfa23b2c		https://www.encodeproject.org/files/ENCFF893LMP/@@download/ENCFF893LMP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		
ENCFF834BCC	bed narrowPeak	peaks	ENCSR569XNP	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				FOS-human	DNA					False	2016-12-19	ENCODE				1							ENCFF583FAG, ENCFF689SLU	6839779	ENCODE Processing Pipeline	450cde9be37115459b7430067e0bb0f7		https://www.encodeproject.org/files/ENCFF834BCC/@@download/ENCFF834BCC.bed.gz	hg19			released		duplicate lane review		
ENCFF067FOD	bed narrowPeak	peaks	ENCSR404BPV	ChIP-seq	CL:0002319	neural cell	in vitro differentiated cells	Homo sapiens				SMC3-human	DNA					False	2014-07-07	ENCODE				1							ENCFF080XQT, ENCFF105FME, ENCFF980CFV	6991836	ENCODE Processing Pipeline	15b08a64f29cd4b9744c49798726dfa8		https://www.encodeproject.org/files/ENCFF067FOD/@@download/ENCFF067FOD.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	experiment not submitted to GEO	poor library complexity	
ENCFF772HIT	bed narrowPeak	peaks	ENCSR000BSA	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF242DVM, ENCFF831FMU	5306321	ENCODE Processing Pipeline	2d56dc8d6dd0bc4727e57c7c1d979985		https://www.encodeproject.org/files/ENCFF772HIT/@@download/ENCFF772HIT.bed.gz	hg19			released	low read depth	biological replicates with identical biosample		missing control alignments
ENCFF539MNA	bed narrowPeak	peaks	ENCSR000FCE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ETV6-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT	6192680	ENCODE Processing Pipeline	929042b07cf8f9c996d1039cf9d60363		https://www.encodeproject.org/files/ENCFF539MNA/@@download/ENCFF539MNA.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF611XPF	bed narrowPeak	peaks	ENCSR124BJR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ETV6-human	DNA					False	2014-07-07	ENCODE				1							ENCFF335IPE, ENCFF890OID	4886038	ENCODE Processing Pipeline	b3815ddeec64dda0ee78e87fa3eebd62		https://www.encodeproject.org/files/ENCFF611XPF/@@download/ENCFF611XPF.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth			
ENCFF549YDX	bed narrowPeak	peaks	ENCSR267DFA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXA1-human	DNA					False	2016-07-28	ENCODE				1							ENCFF449NNE, ENCFF540FMP	6167982	ENCODE Processing Pipeline	0ddce83637fc1bf4b9c6eeaebf3ab8b8		https://www.encodeproject.org/files/ENCFF549YDX/@@download/ENCFF549YDX.bed.gz	hg19			released				
ENCFF407UZQ	bed narrowPeak	peaks	ENCSR783QUL	ChIP-seq	EFO:0007112	Loucy	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF552AOU, ENCFF751LWI, ENCFF938OPX	5220701	ENCODE Processing Pipeline	6bc24ca663a7f8480eb8455c6c289f9a		https://www.encodeproject.org/files/ENCFF407UZQ/@@download/ENCFF407UZQ.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF513GHF	bed narrowPeak	peaks	ENCSR392SFJ	ChIP-seq	UBERON:0000995	uterus	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF037HFH, ENCFF976VAT	6543360	ENCODE Processing Pipeline	624f613eb64f5610d48fe6d1dbd7affe		https://www.encodeproject.org/files/ENCFF513GHF/@@download/ENCFF513GHF.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF804HAX	bed narrowPeak	peaks	ENCSR000BRF	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	JUND-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF242TUC, ENCFF540RWT	4277251	ENCODE Processing Pipeline	82d4f0ca4fbc2c9406b10f5587dc113f		https://www.encodeproject.org/files/ENCFF804HAX/@@download/ENCFF804HAX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF499RVM	bed narrowPeak	peaks	ENCSR673WZL	ChIP-seq	EFO:0002071	LNCAP	cell line	Homo sapiens	17β-hydroxy-5α-androstan-3-one	10 nM	4 hour	CTCF-human	DNA					False	2017-06-29	ENCODE				1							ENCFF271APY, ENCFF540UGI, ENCFF854RGJ	7197917	ENCODE Processing Pipeline	66fad398ac62fbfd8c5fab793951b147		https://www.encodeproject.org/files/ENCFF499RVM/@@download/ENCFF499RVM.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF314SAN	bed narrowPeak	peaks	ENCSR986CDX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NEUROD1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF325ZZV, ENCFF335IPE	5353439	ENCODE Processing Pipeline	a666fc7ec79b9e3fd8021d4423ecd24c		https://www.encodeproject.org/files/ENCFF314SAN/@@download/ENCFF314SAN.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF139FDW	bed narrowPeak	peaks	ENCSR297MUV	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2017-01-15	ENCODE				1							ENCFF538MGJ, ENCFF673QQK, ENCFF968BOJ	5120884	ENCODE Processing Pipeline	bc245f6d720ba44499fa9852c7d02b48		https://www.encodeproject.org/files/ENCFF139FDW/@@download/ENCFF139FDW.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption	NTR biosample		
ENCFF305DNA	bed narrowPeak	peaks	ENCSR626VUC	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ETV6-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF209SJM, ENCFF787RYL	5409592	ENCODE Processing Pipeline	93f75b21553a98bd1d29cf1e1165f03a		https://www.encodeproject.org/files/ENCFF305DNA/@@download/ENCFF305DNA.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption	mismatched file status		
ENCFF939VKQ	bed narrowPeak	peaks	ENCSR494UQJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR3C1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF298RPP, ENCFF581ZJL	6452652	ENCODE Processing Pipeline	99eb1c6a796e6f18b5c580fbceb21067		https://www.encodeproject.org/files/ENCFF939VKQ/@@download/ENCFF939VKQ.bed.gz	hg19			released	borderline replicate concordance, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF867DDR	bed narrowPeak	peaks	ENCSR000DMF	ChIP-seq	EFO:0005726	LNCaP clone FGC	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF140XGV, ENCFF776OUN	3572577	ENCODE Processing Pipeline	330781b220a5c21ec41b1910fb1ef55f		https://www.encodeproject.org/files/ENCFF867DDR/@@download/ENCFF867DDR.bed.gz	hg19			released	mild to moderate bottlenecking	biological replicates with identical biosample	control insufficient read depth, insufficient read depth	
ENCFF237AGN	bed narrowPeak	peaks	ENCSR444LIN	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TCF7-human	DNA					False	2016-08-10	ENCODE				1							ENCFF457VAD, ENCFF925QJE	4910075	ENCODE Processing Pipeline	b3f02fb185d6d7e6363c10a7e18e6500		https://www.encodeproject.org/files/ENCFF237AGN/@@download/ENCFF237AGN.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF326RDQ	bed narrowPeak	peaks	ENCSR000BIO	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF492RDK, ENCFF692IRB	3778655	ENCODE Processing Pipeline	195e3c59951c338fd2cc7df7b6dd36d6		https://www.encodeproject.org/files/ENCFF326RDQ/@@download/ENCFF326RDQ.bed.gz	hg19			released	control low read depth, low read length, low read depth	biological replicates with identical biosample		
ENCFF134UIM	bed narrowPeak	peaks	ENCSR028NUR	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF592-human	DNA					False	2016-06-14	ENCODE				1							ENCFF198QUT, ENCFF583FAG	5681608	ENCODE Processing Pipeline	e7854ed555b792a50ba5d4d7d56ece65		https://www.encodeproject.org/files/ENCFF134UIM/@@download/ENCFF134UIM.bed.gz	hg19			released	borderline replicate concordance, low read depth			
ENCFF493YRO	bed narrowPeak	peaks	ENCSR000BIQ	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				SIX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF503ZQQ	3734763	ENCODE Processing Pipeline	1bf74b6f5643a0762889de42c7498a65		https://www.encodeproject.org/files/ENCFF493YRO/@@download/ENCFF493YRO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		missing control alignments
ENCFF067UPX	bed narrowPeak	peaks	ENCSR038DJJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SMAD1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF335IPE, ENCFF589BQJ	4686830	ENCODE Processing Pipeline	953df01f5694db5b646bd916b71b2a69		https://www.encodeproject.org/files/ENCFF067UPX/@@download/ENCFF067UPX.bed.gz	hg19			released	low read length, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF075PCI	bed narrowPeak	peaks	ENCSR000BKA	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ETS1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF477EHC, ENCFF963CVB	4277244	ENCODE Processing Pipeline	e42f904d05a8e549ceaf5946f90b146c		https://www.encodeproject.org/files/ENCFF075PCI/@@download/ENCFF075PCI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		
ENCFF452NTV	bed narrowPeak	peaks	ENCSR000BIB	ChIP-seq	EFO:0002786	GM12892	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF338LXS, ENCFF671VNQ	4169085	ENCODE Processing Pipeline	ef4d0c765acd3139e669be500c3ce54d		https://www.encodeproject.org/files/ENCFF452NTV/@@download/ENCFF452NTV.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking	biological replicates with identical biosample		
ENCFF846TRX	bed narrowPeak	peaks	ENCSR207PFI	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZBED1-human	DNA					False	2016-02-05	ENCODE				1							ENCFF445QVI, ENCFF534KZJ, ENCFF927EKA	6731053	ENCODE Processing Pipeline	7268d5254a0b1fb2e2af59a0bf851ec8		https://www.encodeproject.org/files/ENCFF846TRX/@@download/ENCFF846TRX.bed.gz	hg19			released	borderline replicate concordance			
ENCFF348PXE	bed narrowPeak	peaks	ENCSR000BJK	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				GABPA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF292YHA, ENCFF782VTV, ENCFF802GPW	4800977	ENCODE Processing Pipeline	bb1d33e242331a08ebb45e75268793b4		https://www.encodeproject.org/files/ENCFF348PXE/@@download/ENCFF348PXE.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF929SGA	bed narrowPeak	peaks	ENCSR000EDO	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				CEBPZ-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF107SKX, ENCFF560JLB	4706650	ENCODE Processing Pipeline	d42a88d216a12127529d2d79002fbd92		https://www.encodeproject.org/files/ENCFF929SGA/@@download/ENCFF929SGA.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF947XIL	bed narrowPeak	peaks	ENCSR088HZI	ChIP-seq	EFO:0002357	SU-DHL-6	cell line	Homo sapiens				EZH2phosphoT487-human	DNA		see document	see document		False	2018-02-06	ENCODE				1							ENCFF349UGY, ENCFF408JOT, ENCFF617BET	6824200	ENCODE Processing Pipeline	423e5c587283524e2bfd1703cf571e12		https://www.encodeproject.org/files/ENCFF947XIL/@@download/ENCFF947XIL.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF617LWA	bed narrowPeak	peaks	ENCSR000EDS	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MAX-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF107SKX, ENCFF862AER	4994239	ENCODE Processing Pipeline	8aa8aa4ef2f55bb730811deb12821ea0		https://www.encodeproject.org/files/ENCFF617LWA/@@download/ENCFF617LWA.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF620ZIR	bed narrowPeak	peaks	ENCSR000BHP	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOSL2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF015KCD, ENCFF334MOO, ENCFF472OOV	5934827	ENCODE Processing Pipeline	c34ac632ec2a669dc3f87f1e6b604948		https://www.encodeproject.org/files/ENCFF620ZIR/@@download/ENCFF620ZIR.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample		
ENCFF812IYD	bed narrowPeak	peaks	ENCSR912NMR	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NONO-human	DNA					False	2016-06-14	ENCODE				1							ENCFF368TVX, ENCFF583FAG	5657627	ENCODE Processing Pipeline	869a5b82e321ddc4bf20075abe81d92e		https://www.encodeproject.org/files/ENCFF812IYD/@@download/ENCFF812IYD.bed.gz	hg19			released	borderline replicate concordance			
ENCFF455MUC	bed narrowPeak	peaks	ENCSR000BJD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				RXRA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF401FGJ, ENCFF958RTR	3468731	ENCODE Processing Pipeline	66e5c23d8485c0e66c34c7276e574804		https://www.encodeproject.org/files/ENCFF455MUC/@@download/ENCFF455MUC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF845YAV	bed narrowPeak	peaks	ENCSR000BPM	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	YY1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF664NJN, ENCFF864UEQ	6556130	ENCODE Processing Pipeline	79a717fc5f099cde1689cb817eef3c8f		https://www.encodeproject.org/files/ENCFF845YAV/@@download/ENCFF845YAV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		missing control alignments
ENCFF562GZU	bed narrowPeak	peaks	ENCSR000EWY	ChIP-seq	EFO:0005236	NT2/D1	cell line	Homo sapiens				ZNF274-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF205KMO, ENCFF863SME	6262776	ENCODE Processing Pipeline	e685eefb70eb7e0dad36efe49485b5d8		https://www.encodeproject.org/files/ENCFF562GZU/@@download/ENCFF562GZU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF511NBR	bed narrowPeak	peaks	ENCSR000DYC	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF296BML, ENCFF512WDI, ENCFF518QII	4845182	ENCODE Processing Pipeline	408a9aff4470bd0dda09b5399f114544		https://www.encodeproject.org/files/ENCFF511NBR/@@download/ENCFF511NBR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF039AWP	bed narrowPeak	peaks	ENCSR000EXR	ChIP-seq	CL:0000765	erythroblast	primary cell	Homo sapiens				GATA1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF462CTI, ENCFF949HSN	4232953	ENCODE Processing Pipeline	bb939532e10026a90ceb2f505c7c67e3		https://www.encodeproject.org/files/ENCFF039AWP/@@download/ENCFF039AWP.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample		
ENCFF507VHP	bed narrowPeak	peaks	ENCSR000DTL	ChIP-seq	CL:0000706	choroid plexus epithelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF519LBB, ENCFF783NTR	4243444	ENCODE Processing Pipeline	5beeef7135e9f5251327dee9b9ae1a12		https://www.encodeproject.org/files/ENCFF507VHP/@@download/ENCFF507VHP.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth			
ENCFF400FLC	bed narrowPeak	peaks	ENCSR219BXP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				DPF2-human	DNA					False	2017-11-14	ENCODE				1							ENCFF581ZJL, ENCFF814UHO	7085731	ENCODE Processing Pipeline	fb326ecec20c455e0db75b1b0834f938		https://www.encodeproject.org/files/ENCFF400FLC/@@download/ENCFF400FLC.bed.gz	hg19			released	borderline replicate concordance	experiment not submitted to GEO		
ENCFF389XPF	bed narrowPeak	peaks	ENCSR680OFU	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				EP300-human	DNA					False	2014-07-07	ENCODE				1							ENCFF092PCB, ENCFF316UXC	5299369	ENCODE Processing Pipeline	54a53e5f971224cb57b7ca10cb9f0ac7		https://www.encodeproject.org/files/ENCFF389XPF/@@download/ENCFF389XPF.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, antibody characterized with exemption	experiment not submitted to GEO		
ENCFF125VLX	bed narrowPeak	peaks	ENCSR680OFU	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				EP300-human	DNA					False	2014-07-07	ENCODE				1							ENCFF092PCB, ENCFF316UXC	5125963	ENCODE Processing Pipeline	4071c3422e701bacf8b5834edf5190d4		https://www.encodeproject.org/files/ENCFF125VLX/@@download/ENCFF125VLX.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, antibody characterized with exemption	experiment not submitted to GEO		
ENCFF734JFJ	bed narrowPeak	peaks	ENCSR000BNA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZBTB33-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF760RWX	2881795	ENCODE Processing Pipeline	3c6fbf1d9b9bb64f1619cb591ddc3eac		https://www.encodeproject.org/files/ENCFF734JFJ/@@download/ENCFF734JFJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF026WLK	bed narrowPeak	peaks	ENCSR200CUA	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				HDGF-human	DNA					False	2016-06-23	ENCODE				1							ENCFF049MPQ, ENCFF583FAG, ENCFF828KQX	6916711	ENCODE Processing Pipeline	709ae80b1f54ed141c4a37fed334ebb7		https://www.encodeproject.org/files/ENCFF026WLK/@@download/ENCFF026WLK.bed.gz	hg19			released	borderline replicate concordance			
ENCFF471EDO	bed narrowPeak	peaks	ENCSR261EDU	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MNT-human	DNA					False	2016-07-28	ENCODE				1							ENCFF207NEA, ENCFF449NNE	6397733	ENCODE Processing Pipeline	7d121d6e7631413064a897e119812a8d		https://www.encodeproject.org/files/ENCFF471EDO/@@download/ENCFF471EDO.bed.gz	hg19			released				
ENCFF815GPU	bed narrowPeak	peaks	ENCSR113GDB	ChIP-seq	EFO:0002860	SK-N-MC	cell line	Homo sapiens				EZH2-human	DNA					False	2017-12-14	ENCODE				1							ENCFF505ZSL, ENCFF708WIV	7028386	ENCODE Processing Pipeline	d6534010d793507e92522781e0492530		https://www.encodeproject.org/files/ENCFF815GPU/@@download/ENCFF815GPU.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF080QIA	bed narrowPeak	peaks	ENCSR330OEO	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				HDAC2-human	DNA					False	2017-08-12	ENCODE				1							ENCFF432IXF, ENCFF602SNK, ENCFF620EZL	5961445	ENCODE Processing Pipeline	20bff0afdb2ea318f0f997bbaf9d0d9e		https://www.encodeproject.org/files/ENCFF080QIA/@@download/ENCFF080QIA.bed.gz	hg19			released				
ENCFF205BAR	bed narrowPeak	peaks	ENCSR000EGB	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TBL1XR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF232HND, ENCFF710NTS	5205295	ENCODE Processing Pipeline	0668bcb1f596df50e9193d8ba5c90e50		https://www.encodeproject.org/files/ENCFF205BAR/@@download/ENCFF205BAR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF668CZT	bed narrowPeak	peaks	ENCSR000BIR	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				SP1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF271AEZ, ENCFF356DXM	4827069	ENCODE Processing Pipeline	bbc7011954414f04decf521a5b6dac20		https://www.encodeproject.org/files/ENCFF668CZT/@@download/ENCFF668CZT.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF322UFN	bed narrowPeak	peaks	ENCSR254YRM	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				CTCF-human	DNA					False	2017-04-14	ENCODE				1							ENCFF498EIA, ENCFF631FAS, ENCFF947OYN	4691621	ENCODE Processing Pipeline	17235ddc4779af39ef2599504b5ccb70		https://www.encodeproject.org/files/ENCFF322UFN/@@download/ENCFF322UFN.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	experiment not submitted to GEO	missing input control	missing control alignments
ENCFF015JHG	bed narrowPeak	peaks	ENCSR000DTR	ChIP-seq	CL:0002252	epithelial cell of esophagus	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF145CAZ, ENCFF999PXI	4136561	ENCODE Processing Pipeline	b722740c8432187aec3b4e6da26dbe36		https://www.encodeproject.org/files/ENCFF015JHG/@@download/ENCFF015JHG.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms		insufficient read depth	missing control alignments
ENCFF301EVY	bed narrowPeak	peaks	ENCSR899BKM	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZNF687-human	DNA					False	2016-07-28	ENCODE				1							ENCFF583FAG, ENCFF602MLF	6658442	ENCODE Processing Pipeline	e8baf65a7b4eca3efdcb5c78b6c9fe45		https://www.encodeproject.org/files/ENCFF301EVY/@@download/ENCFF301EVY.bed.gz	hg19			released				
ENCFF460AIN	bed narrowPeak	peaks	ENCSR000EFM	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				CEBPB-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF191DFR, ENCFF576ZHG, ENCFF601AUG	5820931	ENCODE Processing Pipeline	9da03b794dee6a2a7f582a91342996fa		https://www.encodeproject.org/files/ENCFF460AIN/@@download/ENCFF460AIN.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF959MXK	bed narrowPeak	peaks	ENCSR000EGC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				RCOR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF072HKU, ENCFF710NTS	5051372	ENCODE Processing Pipeline	0ad30b28ec7b893683aa702b3ec92aab		https://www.encodeproject.org/files/ENCFF959MXK/@@download/ENCFF959MXK.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF323MMZ	bed narrowPeak	peaks	ENCSR000ECF	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				RFX5-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF599MVB, ENCFF724ITL	4398850	ENCODE Processing Pipeline	d9eb88f122cfd3a49fb2c63bc6e64e1c		https://www.encodeproject.org/files/ENCFF323MMZ/@@download/ENCFF323MMZ.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF882BWU	bed narrowPeak	peaks	ENCSR513UQG	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				USF2-human	DNA					False	2017-06-15	ENCODE				1							ENCFF228QGC, ENCFF880YHS	4766514	ENCODE Processing Pipeline	9a3544f739c36347999043fb5562c30d		https://www.encodeproject.org/files/ENCFF882BWU/@@download/ENCFF882BWU.bed.gz	hg19			released	file validation error, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption	mismatched file status		
ENCFF655JXN	bed narrowPeak	peaks	ENCSR000DNM	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFYB-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF629CYS	3243986	ENCODE Processing Pipeline	0dc3d0dfd191faaf756cd14b828a8fdf		https://www.encodeproject.org/files/ENCFF655JXN/@@download/ENCFF655JXN.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF417EBM	bed narrowPeak	peaks	ENCSR000BJC	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	dexamethasone	100 nM	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF102JFM, ENCFF665XOJ	3096435	ENCODE Processing Pipeline	4b61c33658f64cef00a3973ea2771d60		https://www.encodeproject.org/files/ENCFF417EBM/@@download/ENCFF417EBM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF816UIF	bed narrowPeak	peaks	ENCSR000BJL	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF292YHA, ENCFF782VTV, ENCFF967BLL	4640270	ENCODE Processing Pipeline	239a09275391130d6fec1cb7bc0a9e9b		https://www.encodeproject.org/files/ENCFF816UIF/@@download/ENCFF816UIF.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF012KYI	bed narrowPeak	peaks	ENCSR663ZZZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MNT-human	DNA					False	2014-07-07	ENCODE				1							ENCFF049MPQ, ENCFF221NPH, ENCFF583FAG	6781218	ENCODE Processing Pipeline	cacd1d6ef9b917be0adc3681cc09c9e2		https://www.encodeproject.org/files/ENCFF012KYI/@@download/ENCFF012KYI.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF735EGA	bed narrowPeak	peaks	ENCSR742IDN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR2C1-human	DNA					False	2017-01-27	ENCODE				1							ENCFF160VXC, ENCFF965SIW	6692518	ENCODE Processing Pipeline	6a302f9366a47443547a372527ca43ee		https://www.encodeproject.org/files/ENCFF735EGA/@@download/ENCFF735EGA.bed.gz	hg19			released	file validation error, mild to moderate bottlenecking, antibody characterized with exemption	mismatched file status		
ENCFF904GCW	bed narrowPeak	peaks	ENCSR000BQR	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	bisphenol A	100 nM	1 hour	ESR1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF277EKP, ENCFF670BCP, ENCFF902HRT	3661889	ENCODE Processing Pipeline	a645018a151b9243fa311099318e11a6		https://www.encodeproject.org/files/ENCFF904GCW/@@download/ENCFF904GCW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF558ONH	bed narrowPeak	peaks	ENCSR608WPS	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2017-08-28	ENCODE				1							ENCFF245TKJ, ENCFF937EBV	5355301	ENCODE Processing Pipeline	a2c75be92a1492a2e99624038259d179		https://www.encodeproject.org/files/ENCFF558ONH/@@download/ENCFF558ONH.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		missing nih_institutional_certification
ENCFF696JKX	bed narrowPeak	peaks	ENCSR375VXU	ChIP-seq	UBERON:0001211	Peyer's patch	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF055UXI, ENCFF555CXI	6384873	ENCODE Processing Pipeline	8604eaccdc097ac0640b35650ba24f0e		https://www.encodeproject.org/files/ENCFF696JKX/@@download/ENCFF696JKX.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF878DLA	bed narrowPeak	peaks	ENCSR514VYD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NR2F1-human	DNA					False	2017-04-14	ENCODE				1							ENCFF342HIU, ENCFF901CND	6779574	ENCODE Processing Pipeline	7234d3b4a0de8c0f2e2bf90b6035ae20		https://www.encodeproject.org/files/ENCFF878DLA/@@download/ENCFF878DLA.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF409LKX	bed narrowPeak	peaks	ENCSR029IBC	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ARNT-human	DNA					False	2017-01-31	ENCODE				1							ENCFF221MEC, ENCFF449NNE	5893692	ENCODE Processing Pipeline	269b18f035b2f437d5a86ad57d2d73ba		https://www.encodeproject.org/files/ENCFF409LKX/@@download/ENCFF409LKX.bed.gz	hg19			released	borderline replicate concordance			
ENCFF827IXZ	bed narrowPeak	peaks	ENCSR000EDQ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				RCOR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF038DTA, ENCFF107SKX	5588175	ENCODE Processing Pipeline	f69a17eb084307428fc3d15a8b069dcb		https://www.encodeproject.org/files/ENCFF827IXZ/@@download/ENCFF827IXZ.bed.gz	hg19			released	low read length, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF308RFY	bed narrowPeak	peaks	ENCSR342THD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BCLAF1-human	DNA					False	2017-04-14	ENCODE				1							ENCFF816IGR, ENCFF901CND	5961135	ENCODE Processing Pipeline	81d93d6c05d0232c271be38ec82ff8fa		https://www.encodeproject.org/files/ENCFF308RFY/@@download/ENCFF308RFY.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity, antibody characterized with exemption			
ENCFF322TVZ	bed narrowPeak	peaks	ENCSR249BHQ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF592-human	DNA					False	2017-05-17	ENCODE				1							ENCFF155TVA, ENCFF160VXC	7093766	ENCODE Processing Pipeline	ab63538dc764ed73d698c6004ed4af4a		https://www.encodeproject.org/files/ENCFF322TVZ/@@download/ENCFF322TVZ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF646CMN	bed narrowPeak	peaks	ENCSR359LOD	ChIP-seq	EFO:0002074	PC-3	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-10-19	ENCODE				1							ENCFF112OEB, ENCFF186LRX, ENCFF476MIY	6095639	ENCODE Processing Pipeline	7ab32b2460247a09c348e205d542ed9a		https://www.encodeproject.org/files/ENCFF646CMN/@@download/ENCFF646CMN.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF601KTD	bed narrowPeak	peaks	ENCSR189VXS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GTF2F1-human	DNA					False	2018-01-30	ENCODE				1							ENCFF262CJE, ENCFF506DFV, ENCFF842XJL	6898463	ENCODE Processing Pipeline	3c127fea89d3f7d81af3ae4f316cd256		https://www.encodeproject.org/files/ENCFF601KTD/@@download/ENCFF601KTD.bed.gz	hg19			released		experiment not submitted to GEO	partially characterized antibody	
ENCFF333AFS	bed narrowPeak	peaks	ENCSR906PEI	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				SP1-human	DNA					False	2017-05-18	ENCODE				1							ENCFF040GAR, ENCFF180CLD, ENCFF760DHW	6612799	ENCODE Processing Pipeline	08a070c5b1ce4adbd72f9d307a919328		https://www.encodeproject.org/files/ENCFF333AFS/@@download/ENCFF333AFS.bed.gz	hg19			released				
ENCFF935FTJ	bed narrowPeak	peaks	ENCSR756ZKG	ChIP-seq	EFO:0006710	OCI-LY3	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2014-07-11	ENCODE				1							ENCFF144FLB, ENCFF574DLY, ENCFF957IJL	6335023	ENCODE Processing Pipeline	71543bcc95c3ceee1fbd1f6500c40145		https://www.encodeproject.org/files/ENCFF935FTJ/@@download/ENCFF935FTJ.bed.gz	hg19			released	low read length, low read depth, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF924ENQ	bed narrowPeak	peaks	ENCSR557RVF	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZHX1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF335IPE, ENCFF899GZH	4790813	ENCODE Processing Pipeline	1796f8c5ec325de31bd279836a44dc3e		https://www.encodeproject.org/files/ENCFF924ENQ/@@download/ENCFF924ENQ.bed.gz	hg19			released	low read length, low read depth			
ENCFF782VWT	bed narrowPeak	peaks	ENCSR046HGP	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				EZH2-human	DNA					False	2017-11-18	ENCODE				1							ENCFF098SJQ, ENCFF394JPJ, ENCFF420OJT	6454259	ENCODE Processing Pipeline	519bf4937d6fa21d96d52ddd303d57db		https://www.encodeproject.org/files/ENCFF782VWT/@@download/ENCFF782VWT.bed.gz	hg19			released	mixed run types, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF485PHV	bed narrowPeak	peaks	ENCSR000DZU	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				USF2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF270QLE, ENCFF545DZO	4013789	ENCODE Processing Pipeline	c37fe4f4f26f43a140fc952141d07512		https://www.encodeproject.org/files/ENCFF485PHV/@@download/ENCFF485PHV.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF869LKG	bed narrowPeak	peaks	ENCSR961PPA	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ATF2-human	DNA					False	2016-10-26	ENCODE				1							ENCFF579YLW, ENCFF592WAL, ENCFF901CND	6770534	ENCODE Processing Pipeline	d2fee1cbbf013603b8adb506173ad86b		https://www.encodeproject.org/files/ENCFF869LKG/@@download/ENCFF869LKG.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF516NKL	bed narrowPeak	peaks	ENCSR045YHA	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				EZH2-human	DNA					False	2017-11-10	ENCODE				1							ENCFF139WHV, ENCFF269ZDG	6366413	ENCODE Processing Pipeline	cd140be4cfe587fa8e7727b2881e4da8		https://www.encodeproject.org/files/ENCFF516NKL/@@download/ENCFF516NKL.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment	
ENCFF047WZX	bed narrowPeak	peaks	ENCSR000EUM	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF420MOQ, ENCFF947RUP	3303727	ENCODE Processing Pipeline	a7732936a2aeded2b9bfec77defe7ab5		https://www.encodeproject.org/files/ENCFF047WZX/@@download/ENCFF047WZX.bed.gz	hg19			released			control insufficient read depth, insufficient read depth, insufficient read length	
ENCFF723ESB	bed narrowPeak	peaks	ENCSR395HWC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				IKZF1-human	DNA					False	2016-04-22	ENCODE				1							ENCFF475POO, ENCFF581ZJL	6989631	ENCODE Processing Pipeline	c5a9c9206e878fe8941bc3ea139ce753		https://www.encodeproject.org/files/ENCFF723ESB/@@download/ENCFF723ESB.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF738IWJ	bed narrowPeak	peaks	ENCSR529JYA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				HCFC1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF863VMN, ENCFF871YZO	4325389	ENCODE Processing Pipeline	2eae6944463cabec0764fddb97531e99		https://www.encodeproject.org/files/ENCFF738IWJ/@@download/ENCFF738IWJ.bed.gz	hg19			released	low read length, low read depth			
ENCFF294TXO	bed narrowPeak	peaks	ENCSR353DFU	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				CTCF-human	DNA					False	2017-04-04	ENCODE				1							ENCFF386INF, ENCFF629CBG	6152257	ENCODE Processing Pipeline	3c3f3728aaf8c7ab0d4e3aa350b057dd		https://www.encodeproject.org/files/ENCFF294TXO/@@download/ENCFF294TXO.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF639ZSQ	bed narrowPeak	peaks	ENCSR000DON	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	afimoxifene	1.0 μM	36.0 hour	FOS-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF425RUE, ENCFF474MOK	5366032	ENCODE Processing Pipeline	8022af1f733528645b2cd90cb379d4d8		https://www.encodeproject.org/files/ENCFF639ZSQ/@@download/ENCFF639ZSQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample, duplicate lane review		missing control alignments
ENCFF480TTE	bed narrowPeak	peaks	ENCSR801SWX	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				TARDBP-human	DNA					False	2017-02-01	ENCODE				1							ENCFF583FAG, ENCFF822IOM	6210987	ENCODE Processing Pipeline	374e78559a34de67d23cc29e6508a582		https://www.encodeproject.org/files/ENCFF480TTE/@@download/ENCFF480TTE.bed.gz	hg19			released				
ENCFF640NJO	bed narrowPeak	peaks	ENCSR407BEZ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZHX2-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF049HWT, ENCFF162VTZ, ENCFF632RLI	5898427	ENCODE Processing Pipeline	71586927917965273b6ddd08788748b3		https://www.encodeproject.org/files/ENCFF640NJO/@@download/ENCFF640NJO.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF016QUV	bed narrowPeak	peaks	ENCSR412QBS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TARDBP-human	DNA					False	2016-04-22	ENCODE				1							ENCFF241VLD, ENCFF941TZZ	6786003	ENCODE Processing Pipeline	d41e5e922682d5852cd74c44b53512b4		https://www.encodeproject.org/files/ENCFF016QUV/@@download/ENCFF016QUV.bed.gz	hg19			released				
ENCFF468WHP	bed narrowPeak	peaks	ENCSR173AIR	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF027EKQ, ENCFF779SGY	6923657	ENCODE Processing Pipeline	c95d32d0f84b0fa3da94d6a881bbbd2c		https://www.encodeproject.org/files/ENCFF468WHP/@@download/ENCFF468WHP.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF863FFV	bed narrowPeak	peaks	ENCSR000DQD	ChIP-seq	EFO:0005725	BE2C	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF054LVG, ENCFF170UJD	4585271	ENCODE Processing Pipeline	267dfc560c68f89a60b9602a08a0dd5c		https://www.encodeproject.org/files/ENCFF863FFV/@@download/ENCFF863FFV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF438DXI	bed narrowPeak	peaks	ENCSR000DMS	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens	17β-estradiol	100 nM	45 minute	CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF602XLT, ENCFF628LRK	5404774	ENCODE Processing Pipeline	8d9826e9efce14d6f47062e66584c858		https://www.encodeproject.org/files/ENCFF438DXI/@@download/ENCFF438DXI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample		missing control alignments
ENCFF434NPI	bed narrowPeak	peaks	ENCSR391KQC	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MTA3-human	DNA					False	2016-06-23	ENCODE				1							ENCFF473JXX, ENCFF583FAG	5959233	ENCODE Processing Pipeline	351e46fb7b1dfcaff57caf3fe6d3ffa7		https://www.encodeproject.org/files/ENCFF434NPI/@@download/ENCFF434NPI.bed.gz	hg19			released	borderline replicate concordance			
ENCFF551KOG	bed narrowPeak	peaks	ENCSR000HPG	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				SMC3-human	DNA					False	2016-10-26	ENCODE				1							ENCFF140IKC, ENCFF880YHS	5219246	ENCODE Processing Pipeline	9c2746280f4a60fc37a7786596929e92		https://www.encodeproject.org/files/ENCFF551KOG/@@download/ENCFF551KOG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF618CLL	bed narrowPeak	peaks	ENCSR009MBP	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				HSF1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF426WJH, ENCFF942MNR	4392046	ENCODE Processing Pipeline	eb0e1c79aecca23f1c1ffbcabfb8c607		https://www.encodeproject.org/files/ENCFF618CLL/@@download/ENCFF618CLL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF358WEO	bed narrowPeak	peaks	ENCSR234HEM	ChIP-seq	UBERON:0002106	spleen	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF224VJS, ENCFF452PDJ	5904460	ENCODE Processing Pipeline	8fedf1fed21537f0ab034742414c07aa		https://www.encodeproject.org/files/ENCFF358WEO/@@download/ENCFF358WEO.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF511ZHC	bed narrowPeak	peaks	ENCSR318LVG	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZBTB40-human	DNA					False	2016-09-20	ENCODE				1							ENCFF447KVS, ENCFF712AJA, ENCFF823USR	7155271	ENCODE Processing Pipeline	8c5428df4a3d639d84458f15c9d9274d		https://www.encodeproject.org/files/ENCFF511ZHC/@@download/ENCFF511ZHC.bed.gz	hg19			released	file validation error, mild to moderate bottlenecking	mismatched file status		
ENCFF894EBL	bed narrowPeak	peaks	ENCSR514VAY	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				HCFC1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF370WJQ, ENCFF426WJH	4754374	ENCODE Processing Pipeline	f41e8db986ad83789c943f560b85abbf		https://www.encodeproject.org/files/ENCFF894EBL/@@download/ENCFF894EBL.bed.gz	hg19			released	low read length			
ENCFF468YQB	bed narrowPeak	peaks	ENCSR946ZLI	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-KLF13-human	DNA				formaldehyde	False	2017-11-30	ENCODE				1							ENCFF542YIP	6446867	ENCODE Processing Pipeline	f4e6540bc9c6f00a11e787faea37cc5d		https://www.encodeproject.org/files/ENCFF468YQB/@@download/ENCFF468YQB.bed.gz	hg19			released	low read depth, missing genetic modification characterization	experiment not submitted to GEO		missing control alignments
ENCFF516CRP	bed narrowPeak	peaks	ENCSR066EBK	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXA2-human	DNA					False	2016-07-08	ENCODE				1							ENCFF449NNE, ENCFF867YPG	6692903	ENCODE Processing Pipeline	4cd0006be07720f9547a251755293e61		https://www.encodeproject.org/files/ENCFF516CRP/@@download/ENCFF516CRP.bed.gz	hg19			released				
ENCFF474JRH	bed narrowPeak	peaks	ENCSR047BUZ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ATF2-human	DNA					False	2016-07-08	ENCODE				1							ENCFF449NNE, ENCFF572HWU	6300168	ENCODE Processing Pipeline	b957779de989bcd5ce86ea5e3d87b7c6		https://www.encodeproject.org/files/ENCFF474JRH/@@download/ENCFF474JRH.bed.gz	hg19			released	borderline replicate concordance			
ENCFF505NSP	bed narrowPeak	peaks	ENCSR000BKJ	ChIP-seq	EFO:0002785	GM12891	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF376UIU, ENCFF656BEN	4996117	ENCODE Processing Pipeline	51117687abf0e9a6e9234feeffb4ecc2		https://www.encodeproject.org/files/ENCFF505NSP/@@download/ENCFF505NSP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF627DPA	bed narrowPeak	peaks	ENCSR155VDK	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ZBTB11-human	DNA					False	2016-04-25	ENCODE				1							ENCFF742ATC, ENCFF853BBD	5535207	ENCODE Processing Pipeline	e4cf89185ac34a2b95c92cdd4cb684b4		https://www.encodeproject.org/files/ENCFF627DPA/@@download/ENCFF627DPA.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF698USR	bed narrowPeak	peaks	ENCSR887MXT	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				ZHX1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF316UXC, ENCFF917NVM	4565423	ENCODE Processing Pipeline	5bee42383636d4133d47309fe321a74f		https://www.encodeproject.org/files/ENCFF698USR/@@download/ENCFF698USR.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth			
ENCFF605EQP	bed narrowPeak	peaks	ENCSR000BIV	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				SRF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF714CGS	3834254	ENCODE Processing Pipeline	7ce30a006c9a6d57e54f6cb2214e3542		https://www.encodeproject.org/files/ENCFF605EQP/@@download/ENCFF605EQP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF558TFD	bed narrowPeak	peaks	ENCSR771GTF	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				SUZ12-human	DNA					False	2014-07-07	ENCODE				1							ENCFF313JJC, ENCFF863VMN	4090890	ENCODE Processing Pipeline	d725778059cebd7da466c1f2021370c8		https://www.encodeproject.org/files/ENCFF558TFD/@@download/ENCFF558TFD.bed.gz	hg19			released	low read length, low read depth			
ENCFF249ESZ	bed narrowPeak	peaks	ENCSR707IUN	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				NFE2L2-human	DNA					False	2016-08-31	ENCODE				1							ENCFF316UXC, ENCFF451LLN	4993141	ENCODE Processing Pipeline	36922ee71029e462331ad1f033edf569		https://www.encodeproject.org/files/ENCFF249ESZ/@@download/ENCFF249ESZ.bed.gz	hg19			released	low read length, low read depth			
ENCFF313GGY	bed narrowPeak	peaks	ENCSR752NDX	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZNF282-human	DNA					False	2018-01-26	ENCODE				1							ENCFF003ABO, ENCFF449NNE, ENCFF999EQI	6804060	ENCODE Processing Pipeline	9813556719a3b8f9ebd4afce29d0dc75		https://www.encodeproject.org/files/ENCFF313GGY/@@download/ENCFF313GGY.bed.gz	hg19			released	borderline replicate concordance	experiment not submitted to GEO	partially characterized antibody	
ENCFF300UJN	bed narrowPeak	peaks	ENCSR799WDT	ChIP-seq	UBERON:0001211	Peyer's patch	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF112QNF, ENCFF714MWU	6414247	ENCODE Processing Pipeline	16579d4b9d4924e23c1e50d246a8f24f		https://www.encodeproject.org/files/ENCFF300UJN/@@download/ENCFF300UJN.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF256QBB	bed narrowPeak	peaks	ENCSR000DZN	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF119SGJ, ENCFF420MOQ	3988271	ENCODE Processing Pipeline	cf3777546d0abfe725a842aadb87a1ef		https://www.encodeproject.org/files/ENCFF256QBB/@@download/ENCFF256QBB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, insufficient read depth	
ENCFF302RJE	bed narrowPeak	peaks	ENCSR223MLH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BRCA1-human	DNA					False	2017-05-18	ENCODE				1							ENCFF160VXC, ENCFF593YDQ	6620058	ENCODE Processing Pipeline	c1eca67e5d636b2e1ffce3d0369a48d8		https://www.encodeproject.org/files/ENCFF302RJE/@@download/ENCFF302RJE.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF427PNP	bed narrowPeak	peaks	ENCSR000BTF	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF027GJA, ENCFF880DIZ	5377648	ENCODE Processing Pipeline	8ead2387144ed550b5e379831425b0f0		https://www.encodeproject.org/files/ENCFF427PNP/@@download/ENCFF427PNP.bed.gz	hg19			released	low read depth	biological replicates with identical biosample	insufficient replicate concordance	
ENCFF738FKM	bed narrowPeak	peaks	ENCSR000DPG	ChIP-seq	NTR:0000478	AG04449	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF083JSC, ENCFF647YII	2224631	ENCODE Processing Pipeline	f94b8b4360fdbb9c8dbeb158af2f9890		https://www.encodeproject.org/files/ENCFF738FKM/@@download/ENCFF738FKM.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity	NTR biosample	insufficient read depth	missing control alignments
ENCFF355FJN	bed narrowPeak	peaks	ENCSR618GDK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CEBPZ-human	DNA					False	2014-07-07	ENCODE				1							ENCFF335IPE, ENCFF707DVP	4271462	ENCODE Processing Pipeline	dca743565f99bebc0a1da12f168a6062		https://www.encodeproject.org/files/ENCFF355FJN/@@download/ENCFF355FJN.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance			
ENCFF651CJJ	bed narrowPeak	peaks	ENCSR987GXT	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				CTCF-human	DNA					False	2017-10-19	ENCODE				1							ENCFF012OUS, ENCFF269ZDG, ENCFF560TNV	6681215	ENCODE Processing Pipeline	efca6c1f51e285d7447fcc830b91412d		https://www.encodeproject.org/files/ENCFF651CJJ/@@download/ENCFF651CJJ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF802MVF	bed narrowPeak	peaks	ENCSR778QLY	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				ELF4-human	DNA					False	2017-01-31	ENCODE				1							ENCFF040GAR, ENCFF833TQH	5744481	ENCODE Processing Pipeline	87dad70aa9c043d4ecd92ed563a6b90c		https://www.encodeproject.org/files/ENCFF802MVF/@@download/ENCFF802MVF.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption			
ENCFF887CGM	bed narrowPeak	peaks	ENCSR857PBV	ChIP-seq	EFO:0002095	22Rv1	cell line	Homo sapiens				CTCF-human	DNA					False	2017-06-15	ENCODE				1							ENCFF113PTE, ENCFF559SOB, ENCFF761NWZ	7126902	ENCODE Processing Pipeline	6a916111c34985eec52fd3cc0dfa49ba		https://www.encodeproject.org/files/ENCFF887CGM/@@download/ENCFF887CGM.bed.gz	hg19			released	mild to moderate bottlenecking	NTR biosample		
ENCFF783JKF	bed narrowPeak	peaks	ENCSR867WPH	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				REST-human	DNA					False	2016-06-30	ENCODE				1							ENCFF039BUJ, ENCFF235CCD, ENCFF321UJV	6565432	ENCODE Processing Pipeline	6aa5ae808742febf0230c56d9acb5167		https://www.encodeproject.org/files/ENCFF783JKF/@@download/ENCFF783JKF.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF727WJU	bed narrowPeak	peaks	ENCSR237VLT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZBTB40-human	DNA					False	2016-08-01	ENCODE				1							ENCFF581ZJL, ENCFF861YTF	7063882	ENCODE Processing Pipeline	12166be600da69a05f8b8c0a2b48599d		https://www.encodeproject.org/files/ENCFF727WJU/@@download/ENCFF727WJU.bed.gz	hg19			released				
ENCFF644PFR	bed narrowPeak	peaks	ENCSR831EIW	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				FOXM1-human	DNA					False	2017-04-14	ENCODE				1							ENCFF052TDK, ENCFF529BVI, ENCFF772FBN	6303308	ENCODE Processing Pipeline	5f57ce0648e594494bde45888303337f		https://www.encodeproject.org/files/ENCFF644PFR/@@download/ENCFF644PFR.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF121SXP	bed narrowPeak	peaks	ENCSR000BJX	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				SP1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF417XUU, ENCFF472OOV	5695202	ENCODE Processing Pipeline	eb5446d5581a3e921632b223a742a1ba		https://www.encodeproject.org/files/ENCFF121SXP/@@download/ENCFF121SXP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient replicate concordance	missing control alignments
ENCFF257RXE	bed narrowPeak	peaks	ENCSR000BIM	ChIP-seq	EFO:0002785	GM12891	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF100AQB, ENCFF864ASU	4412393	ENCODE Processing Pipeline	2fde7dc0594fe5a62bbdd81b2bbfc518		https://www.encodeproject.org/files/ENCFF257RXE/@@download/ENCFF257RXE.bed.gz	hg19			released	control low read depth, low read length, low read depth	biological replicates with identical biosample		missing control alignments
ENCFF368ICR	bed narrowPeak	peaks	ENCSR000BMX	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	GATA3-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF874VLY, ENCFF960JYT	5309367	ENCODE Processing Pipeline	e7d2fb2df81ccb4cb6419371607adb70		https://www.encodeproject.org/files/ENCFF368ICR/@@download/ENCFF368ICR.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF109JXK	bed narrowPeak	peaks	ENCSR074SFL	ChIP-seq	UBERON:0004648	esophagus muscularis mucosa	tissue	Homo sapiens				CTCF-human	DNA					False	2017-03-20	ENCODE				1							ENCFF438KPT, ENCFF580MDV	6016392	ENCODE Processing Pipeline	d25413af83de49a52cf86d95f876626e		https://www.encodeproject.org/files/ENCFF109JXK/@@download/ENCFF109JXK.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF626BVG	bed narrowPeak	peaks	ENCSR000BID	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				BHLHE40-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF346RZT, ENCFF529FSM	3758228	ENCODE Processing Pipeline	efa6e441abe311e7ddffe6e8a7adb261		https://www.encodeproject.org/files/ENCFF626BVG/@@download/ENCFF626BVG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth, poor library complexity, severe bottlenecking	missing control alignments
ENCFF474BFW	bed narrowPeak	peaks	ENCSR000BLD	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				RAD21-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF944SJF	4366278	ENCODE Processing Pipeline	4008d402db31e69859e5275661f86729		https://www.encodeproject.org/files/ENCFF474BFW/@@download/ENCFF474BFW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	biological replicates with identical biosample		missing control alignments
ENCFF434CQV	bed narrowPeak	peaks	ENCSR000DZX	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				IRF3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF205RMR, ENCFF545DZO	3616303	ENCODE Processing Pipeline	dd542aa81f9d46b5460ec319fc70bc21		https://www.encodeproject.org/files/ENCFF434CQV/@@download/ENCFF434CQV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF037BJD	bed narrowPeak	peaks	ENCSR325DER	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR3C1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF581ZJL, ENCFF844VCV	6046939	ENCODE Processing Pipeline	d2b5c4be0b5525b49291ebf01a7449b5		https://www.encodeproject.org/files/ENCFF037BJD/@@download/ENCFF037BJD.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity	experiment not submitted to GEO	partially characterized antibody	
ENCFF951XWI	bed narrowPeak	peaks	ENCSR670FDA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFATC3-human	DNA					False	2017-09-29	ENCODE				1							ENCFF410WSQ, ENCFF581ZJL	6612725	ENCODE Processing Pipeline	3524fdf624f98312e8d8eddba86a108e		https://www.encodeproject.org/files/ENCFF951XWI/@@download/ENCFF951XWI.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF782FAJ	bed narrowPeak	peaks	ENCSR024CNP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				EGR1-human	DNA					False	2017-05-17	ENCODE				1							ENCFF262CJE, ENCFF506DFV, ENCFF798EEI	6792822	ENCODE Processing Pipeline	7f92a2c22d03cbc0d8ef279014a1724a		https://www.encodeproject.org/files/ENCFF782FAJ/@@download/ENCFF782FAJ.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF686SJD	bed narrowPeak	peaks	ENCSR000BKP	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				JUND-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF255PIM, ENCFF356DXM	4137913	ENCODE Processing Pipeline	e03796a634f2dca9d97626146b10d083		https://www.encodeproject.org/files/ENCFF686SJD/@@download/ENCFF686SJD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent platforms	biological replicates with identical biosample	poor library complexity, severe bottlenecking	
ENCFF049YTC	bed narrowPeak	peaks	ENCSR711XNY	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				PKNOX1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF869BJB, ENCFF941TZZ	6575051	ENCODE Processing Pipeline	48fe60fc518d56b3898230f0ff2c8eb2		https://www.encodeproject.org/files/ENCFF049YTC/@@download/ENCFF049YTC.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF017WRM	bed narrowPeak	peaks	ENCSR126YEB	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				FOXA1-human	DNA					False	2016-07-08	ENCODE				1							ENCFF287PVI, ENCFF583FAG	6329760	ENCODE Processing Pipeline	f77ad2aefa143dbab754758f42ebc6cb		https://www.encodeproject.org/files/ENCFF017WRM/@@download/ENCFF017WRM.bed.gz	hg19			released	low read depth			
ENCFF762KYA	bed narrowPeak	peaks	ENCSR218GSN	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				ZFX-human	DNA					False	2017-07-21	ENCODE				1							ENCFF158ZFF, ENCFF577USD, ENCFF775HLS	7198375	ENCODE Processing Pipeline	3f17d6ce4249506359a13643c3fe7002		https://www.encodeproject.org/files/ENCFF762KYA/@@download/ENCFF762KYA.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample		
ENCFF974RFW	bed narrowPeak	peaks	ENCSR402IDP	ChIP-seq	EFO:0005724	MM.1S	cell line	Homo sapiens				CTCF-human	DNA					False	2016-08-11	ENCODE				1							ENCFF011CRJ, ENCFF824DBS	6536918	ENCODE Processing Pipeline	0cb1fa6b766990b698099b6a1366dd10		https://www.encodeproject.org/files/ENCFF974RFW/@@download/ENCFF974RFW.bed.gz	hg19			released	low read length, antibody characterized with exemption, mixed read lengths	NTR biosample		
ENCFF734ODE	bed narrowPeak	peaks	ENCSR776CYN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZFP36-human	DNA					False	2018-01-26	ENCODE				1							ENCFF335IPE, ENCFF698CGK	5398160	ENCODE Processing Pipeline	0785087fd5337e650d276effc250e9d1		https://www.encodeproject.org/files/ENCFF734ODE/@@download/ENCFF734ODE.bed.gz	hg19			released	low read length, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF609DTK	bed narrowPeak	peaks	ENCSR107RHZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				YBX1-human	DNA					False	2016-07-28	ENCODE				1							ENCFF581ZJL, ENCFF869CLO	5620010	ENCODE Processing Pipeline	13acb9cf6ce2e69b859c7aabf99aaa7e		https://www.encodeproject.org/files/ENCFF609DTK/@@download/ENCFF609DTK.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF656CUX	bed narrowPeak	peaks	ENCSR882ERE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZKSCAN1-human	DNA					False	2016-03-02	ENCODE				1							ENCFF142DHE, ENCFF335IPE	5509302	ENCODE Processing Pipeline	942fb93cdd4270c3101187df6db73966		https://www.encodeproject.org/files/ENCFF656CUX/@@download/ENCFF656CUX.bed.gz	hg19			released	low read length, low read depth			
ENCFF927QZZ	bed narrowPeak	peaks	ENCSR762PCG	ChIP-seq	UBERON:0002190	subcutaneous adipose tissue	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF329KGR, ENCFF982YZF	4171062	ENCODE Processing Pipeline	e6b6602f40460f8ff484ddd7ba20c247		https://www.encodeproject.org/files/ENCFF927QZZ/@@download/ENCFF927QZZ.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF984NYN	bed narrowPeak	peaks	ENCSR907BES	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2017-08-28	ENCODE				1							ENCFF214PDY, ENCFF579HSF	6358819	ENCODE Processing Pipeline	0c2b795df4e4823dabb906d6b529e05d		https://www.encodeproject.org/files/ENCFF984NYN/@@download/ENCFF984NYN.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, mismatched file status, experiment not submitted to GEO		missing nih_institutional_certification
ENCFF198CPZ	bed narrowPeak	peaks	ENCSR547LKC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GATAD2B-human	DNA					False	2017-05-17	ENCODE				1							ENCFF033PRP, ENCFF160VXC	6717709	ENCODE Processing Pipeline	f4b1a73f9cff8d1402fcf2f19e0fea73		https://www.encodeproject.org/files/ENCFF198CPZ/@@download/ENCFF198CPZ.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance			
ENCFF555PRT	bed narrowPeak	peaks	ENCSR702GMW	ChIP-seq	EFO:0002847	PC-9	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF373PZM, ENCFF567WDW, ENCFF618RNL	7067021	ENCODE Processing Pipeline	8373c7a4e4a68b272bfbd3451ddfe271		https://www.encodeproject.org/files/ENCFF555PRT/@@download/ENCFF555PRT.bed.gz	hg19			released	low read depth, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF883ZAE	bed narrowPeak	peaks	ENCSR502OEK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ELF1-human	DNA					False	2016-07-28	ENCODE				1							ENCFF357FKU, ENCFF581ZJL	6932385	ENCODE Processing Pipeline	973b8e66a7e34eae1cbfafbd7b88fd0a		https://www.encodeproject.org/files/ENCFF883ZAE/@@download/ENCFF883ZAE.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF031LVS	bed narrowPeak	peaks	ENCSR237TFX	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				CTBP1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF040GAR, ENCFF760DHW, ENCFF993THI	6741875	ENCODE Processing Pipeline	df3c5dd321034b12ce8fc8befc607450		https://www.encodeproject.org/files/ENCFF031LVS/@@download/ENCFF031LVS.bed.gz	hg19			released	borderline replicate concordance			
ENCFF329TNA	bed narrowPeak	peaks	ENCSR094WHO	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				FOXA1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF040GAR, ENCFF068ELI	5866358	ENCODE Processing Pipeline	2912a7ff38987f563340dab91a2a0257		https://www.encodeproject.org/files/ENCFF329TNA/@@download/ENCFF329TNA.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF688WOB	bed narrowPeak	peaks	ENCSR459FTB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				UBTF-human	DNA					False	2014-07-07	ENCODE				1							ENCFF370YOR, ENCFF426WJH	4317244	ENCODE Processing Pipeline	ca4086a0202c64d1ebea3c36c2a83996		https://www.encodeproject.org/files/ENCFF688WOB/@@download/ENCFF688WOB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance			
ENCFF846YPA	bed narrowPeak	peaks	ENCSR512NLO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MNT-human	DNA					False	2017-05-17	ENCODE				1							ENCFF510XHR, ENCFF581ZJL	6969714	ENCODE Processing Pipeline	62e5ebddd24974b5d6e8e6dbb6cc0480		https://www.encodeproject.org/files/ENCFF846YPA/@@download/ENCFF846YPA.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF642ZUX	bed narrowPeak	peaks	ENCSR197DJH	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				SREBF1-human	DNA					False	2016-06-14	ENCODE				1							ENCFF583FAG, ENCFF829MEE	6272080	ENCODE Processing Pipeline	68f26d51b5cf69624c9622f1f1e737ea		https://www.encodeproject.org/files/ENCFF642ZUX/@@download/ENCFF642ZUX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF932DYK	bed narrowPeak	peaks	ENCSR347NOB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CEBPZ-human	DNA					False	2016-03-02	ENCODE				1							ENCFF426WJH, ENCFF634ELX	4436318	ENCODE Processing Pipeline	d2c17667ce64ae8b302a304bc09b6b67		https://www.encodeproject.org/files/ENCFF932DYK/@@download/ENCFF932DYK.bed.gz	hg19			released	low read length, low read depth			
ENCFF491ZMR	bed narrowPeak	peaks	ENCSR184MFH	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				ZFP36-human	DNA					False	2014-07-07	ENCODE				1							ENCFF316UXC, ENCFF407ZMZ	4054862	ENCODE Processing Pipeline	973d1132b60ecc98df357eb532c91f46		https://www.encodeproject.org/files/ENCFF491ZMR/@@download/ENCFF491ZMR.bed.gz	hg19			released	low read length, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF391VQJ	bed narrowPeak	peaks	ENCSR473SUA	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				ESRRA-human	DNA					False	2014-07-07	ENCODE				1							ENCFF466OCY, ENCFF863STQ	4281301	ENCODE Processing Pipeline	fd334351cebc3c1ce7fc0f01ad9794e0		https://www.encodeproject.org/files/ENCFF391VQJ/@@download/ENCFF391VQJ.bed.gz	hg19			released	file validation error, low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	mismatched file status		
ENCFF671MPM	bed narrowPeak	peaks	ENCSR954WVZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ESRRA-human	DNA					False	2014-07-07	ENCODE				1							ENCFF049MPQ, ENCFF583FAG, ENCFF701AFL	6488737	ENCODE Processing Pipeline	9779ff42fcda6560a204a2f99b346aa1		https://www.encodeproject.org/files/ENCFF671MPM/@@download/ENCFF671MPM.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF358DXV	bed narrowPeak	peaks	ENCSR080CST	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-ZNF639-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF485MII	6896519	ENCODE Processing Pipeline	57e66ab774a87e729cc11b311c37a014		https://www.encodeproject.org/files/ENCFF358DXV/@@download/ENCFF358DXV.bed.gz	hg19			released	missing genetic modification characterization			missing control alignments
ENCFF945IDU	bed narrowPeak	peaks	ENCSR756URL	ChIP-seq	UBERON:0006920	esophagus squamous epithelium	tissue	Homo sapiens				CTCF-human	DNA					False	2017-08-28	ENCODE				1							ENCFF687UPN, ENCFF721SJQ	6219710	ENCODE Processing Pipeline	bd52af1a09149720674a17d9ebca50e6		https://www.encodeproject.org/files/ENCFF945IDU/@@download/ENCFF945IDU.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		missing nih_institutional_certification
ENCFF444PKI	bed narrowPeak	peaks	ENCSR135ANT	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				NRF1-human	DNA					False	2016-06-14	ENCODE				1							ENCFF583FAG, ENCFF687COF	5770378	ENCODE Processing Pipeline	a2ebc03941cc80f3aa2c12a4b8410b39		https://www.encodeproject.org/files/ENCFF444PKI/@@download/ENCFF444PKI.bed.gz	hg19			released				
ENCFF158PJI	bed narrowPeak	peaks	ENCSR508DQA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				FOXK2-human	DNA					False	2016-04-22	ENCODE				1							ENCFF581ZJL, ENCFF599UMI	6292302	ENCODE Processing Pipeline	5817bd2bc47a0d98ce9dbc84ff763fe4		https://www.encodeproject.org/files/ENCFF158PJI/@@download/ENCFF158PJI.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF767OVA	bed narrowPeak	peaks	ENCSR892DRK	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				REST-human	DNA					False	2016-11-23	ENCODE				1							ENCFF779HOG, ENCFF801GGG, ENCFF881DVS	6195623	ENCODE Processing Pipeline	68cf868c705e7cd7226f5b2bdda1b0a4		https://www.encodeproject.org/files/ENCFF767OVA/@@download/ENCFF767OVA.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF899PSA	bed narrowPeak	peaks	ENCSR984MDV	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-ZNF24-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF469URD	6915760	ENCODE Processing Pipeline	1d2d360bff89a4e1e947d5b6dc93a585		https://www.encodeproject.org/files/ENCFF899PSA/@@download/ENCFF899PSA.bed.gz	hg19			released	missing genetic modification characterization			missing control alignments
ENCFF039PBB	bed narrowPeak	peaks	ENCSR061DGF	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				NANOG-human	DNA					False	2016-06-30	ENCODE				1							ENCFF017YFK, ENCFF786QGA	4632809	ENCODE Processing Pipeline	c5eb36ae5ce07910b68754eeede062fa		https://www.encodeproject.org/files/ENCFF039PBB/@@download/ENCFF039PBB.bed.gz	hg19			released	borderline replicate concordance, antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF730CLD	bed narrowPeak	peaks	ENCSR862PNL	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				L3MBTL2-human	DNA					False	2016-11-21	ENCODE				1							ENCFF529BVI, ENCFF606EGM, ENCFF772FBN	7076180	ENCODE Processing Pipeline	4bb3949417e1b55a046348465c1ed5e4		https://www.encodeproject.org/files/ENCFF730CLD/@@download/ENCFF730CLD.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF225TLM	bed narrowPeak	peaks	ENCSR014YCR	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ATF7-human	DNA					False	2016-07-08	ENCODE				1							ENCFF252NHP, ENCFF941TZZ	6637467	ENCODE Processing Pipeline	56d8b699f70428bd1566f7c6c2fe4a0d		https://www.encodeproject.org/files/ENCFF225TLM/@@download/ENCFF225TLM.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF406YGF	bed narrowPeak	peaks	ENCSR486IFJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ESRRA-human	DNA					False	2014-07-07	ENCODE				1							ENCFF581ZJL, ENCFF747PCD	6755518	ENCODE Processing Pipeline	a33ae1367f5f7bff47dd2433ef6bd489		https://www.encodeproject.org/files/ENCFF406YGF/@@download/ENCFF406YGF.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF834WHV	bed narrowPeak	peaks	ENCSR171FUX	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXK2-human	DNA					False	2016-04-22	ENCODE				1							ENCFF449NNE, ENCFF523AHK	6062598	ENCODE Processing Pipeline	a2b42fd8dfab567ed71052c4fe36b56e		https://www.encodeproject.org/files/ENCFF834WHV/@@download/ENCFF834WHV.bed.gz	hg19			released				
ENCFF701JMF	bed narrowPeak	peaks	ENCSR563YDA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDGF-human	DNA					False	2016-06-13	ENCODE				1							ENCFF073BGI, ENCFF581ZJL	6933666	ENCODE Processing Pipeline	1620ca7375f85882e35e913c96ae9ec5		https://www.encodeproject.org/files/ENCFF701JMF/@@download/ENCFF701JMF.bed.gz	hg19			released				
ENCFF222PPL	bed narrowPeak	peaks	ENCSR091JXL	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HES1-human	DNA					False	2016-07-08	ENCODE				1							ENCFF581ZJL, ENCFF989OSX	6412170	ENCODE Processing Pipeline	f703f936ce9333620ca52565db1f4a11		https://www.encodeproject.org/files/ENCFF222PPL/@@download/ENCFF222PPL.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF344BWA	bed narrowPeak	peaks	ENCSR076EZB	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-KLF9-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF063SNY	7048808	ENCODE Processing Pipeline	d62bfa375b1d466e3780ccf26af0a69e		https://www.encodeproject.org/files/ENCFF344BWA/@@download/ENCFF344BWA.bed.gz	hg19			released	low read depth, missing genetic modification characterization			missing control alignments
ENCFF996USV	bed narrowPeak	peaks	ENCSR252QYR	ChIP-seq	CL:0000182	hepatocyte	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA					False	2016-11-23	ENCODE				1							ENCFF044VWD, ENCFF812MYK, ENCFF831TJC	6041227	ENCODE Processing Pipeline	454f7046e17bdacfc161100d68b14f20		https://www.encodeproject.org/files/ENCFF996USV/@@download/ENCFF996USV.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	NTR biosample	poor library complexity	
ENCFF480CCO	bed narrowPeak	peaks	ENCSR542FLV	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZBTB33-human	DNA					False	2017-11-13	ENCODE				1							ENCFF146EZL, ENCFF941TZZ	6211209	ENCODE Processing Pipeline	d621c8803b3601df8479e24f0a4b7c6b		https://www.encodeproject.org/files/ENCFF480CCO/@@download/ENCFF480CCO.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance	experiment not submitted to GEO		
ENCFF368IHM	bed narrowPeak	peaks	ENCSR429XTR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TARDBP-human	DNA			SDS	formaldehyde	False	2017-02-27	ENCODE				1							ENCFF216EBS, ENCFF508DBG	5654023	ENCODE Processing Pipeline	41b2340859901069610fca97bbe1ca32		https://www.encodeproject.org/files/ENCFF368IHM/@@download/ENCFF368IHM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF559LUB	bed narrowPeak	peaks	ENCSR236YGF	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2017-08-28	ENCODE				1							ENCFF658UTU, ENCFF788LJE	6209258	ENCODE Processing Pipeline	238f11d7842436e967073bd16144a892		https://www.encodeproject.org/files/ENCFF559LUB/@@download/ENCFF559LUB.bed.gz	hg19			released	antibody characterized with exemption	experiment not submitted to GEO, NTR biosample, mismatched file status, out of date analysis		missing nih_institutional_certification
ENCFF227KPY	bed narrowPeak	peaks	ENCSR243INX	ChIP-seq	EFO:0002847	PC-9	cell line	Homo sapiens				CTCF-human	DNA					False	2017-01-12	ENCODE				1							ENCFF420OBI, ENCFF521ZZZ, ENCFF609XOY	6427945	ENCODE Processing Pipeline	be3dae88aff168362e1ea5418de02669		https://www.encodeproject.org/files/ENCFF227KPY/@@download/ENCFF227KPY.bed.gz	hg19			released	mild to moderate bottlenecking, mixed run types, moderate library complexity, antibody characterized with exemption	NTR biosample		
ENCFF066ESG	bed narrowPeak	peaks	ENCSR201NQZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CTBP1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF581ZJL, ENCFF808HEF	7153106	ENCODE Processing Pipeline	bee251de2f81da98d55e8beebd9ee60d		https://www.encodeproject.org/files/ENCFF066ESG/@@download/ENCFF066ESG.bed.gz	hg19			released	borderline replicate concordance			
ENCFF354CCY	bed narrowPeak	peaks	ENCSR157CAU	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZKSCAN1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF791YJK, ENCFF863VMN	5151457	ENCODE Processing Pipeline	7b71ba6dd4b8df5a28140cd8a4bdce0d		https://www.encodeproject.org/files/ENCFF354CCY/@@download/ENCFF354CCY.bed.gz	hg19			released	low read length, borderline replicate concordance			
ENCFF220SFO	bed narrowPeak	peaks	ENCSR179SAO	ChIP-seq	EFO:0002106	A673	cell line	Homo sapiens				EZH2-human	DNA					False	2017-11-29	ENCODE				1							ENCFF042EJM, ENCFF705RUU, ENCFF929MTA	7145261	ENCODE Processing Pipeline	410cd1c1651f8bf957540e7acf93b177		https://www.encodeproject.org/files/ENCFF220SFO/@@download/ENCFF220SFO.bed.gz	hg19			released	borderline replicate concordance, low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF300RLB	bed narrowPeak	peaks	ENCSR681NOM	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CEBPB-human	DNA					False	2014-07-07	ENCODE				1							ENCFF426WJH, ENCFF573GQJ	3989931	ENCODE Processing Pipeline	63a953c29fe9ecd800a8669dbce70dc2		https://www.encodeproject.org/files/ENCFF300RLB/@@download/ENCFF300RLB.bed.gz	hg19			released	low read length, low read depth			
ENCFF498CHM	bed narrowPeak	peaks	ENCSR377BLZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GTF2F1-human	DNA			SDS	formaldehyde	False	2018-01-16	ENCODE				1							ENCFF177GKX, ENCFF353XLY	5439400	ENCODE Processing Pipeline	7acb46a171c05b14d2af9387c81421f3		https://www.encodeproject.org/files/ENCFF498CHM/@@download/ENCFF498CHM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF045DDN	bed narrowPeak	peaks	ENCSR859BMR	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-KLF1-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF827QKJ	7089363	ENCODE Processing Pipeline	f1a873475fa3503c07fbffeff7cfadb2		https://www.encodeproject.org/files/ENCFF045DDN/@@download/ENCFF045DDN.bed.gz	hg19			released	missing genetic modification characterization			missing control alignments
ENCFF386ILV	bed narrowPeak	peaks	ENCSR288IJC	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MAZ-human	DNA					False	2014-07-07	ENCODE				1							ENCFF049MPQ, ENCFF583FAG, ENCFF734GEN	6707725	ENCODE Processing Pipeline	5a9d61cbb45c30936e48fbbf626c5615		https://www.encodeproject.org/files/ENCFF386ILV/@@download/ENCFF386ILV.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF014VXF	bed narrowPeak	peaks	ENCSR861JUQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				FOXK2-human	DNA					False	2017-01-27	ENCODE				1							ENCFF592WAL, ENCFF794TKO, ENCFF901CND	7125011	ENCODE Processing Pipeline	2c378fb23bfd4dd50251096f46e8c02a		https://www.encodeproject.org/files/ENCFF014VXF/@@download/ENCFF014VXF.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF895NJW	bed narrowPeak	peaks	ENCSR584ATA	ChIP-seq	EFO:0006710	OCI-LY3	cell line	Homo sapiens				EZH2phosphoT487-human	DNA					False	2018-02-06	ENCODE				1							ENCFF574DLY, ENCFF933BLG	5506392	ENCODE Processing Pipeline	b52f16ff97121cecc8a753adfec856fc		https://www.encodeproject.org/files/ENCFF895NJW/@@download/ENCFF895NJW.bed.gz	hg19			released	mixed run types, low read depth, antibody characterized with exemption	biological replicates with identical biosample, NTR biosample, experiment not submitted to GEO		
ENCFF011UZZ	bed narrowPeak	peaks	ENCSR155KHM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ARNT-human	DNA					False	2016-04-21	ENCODE				1							ENCFF367QVT, ENCFF581ZJL	6897052	ENCODE Processing Pipeline	75f43cabef1cec46da521df4ee68fd85		https://www.encodeproject.org/files/ENCFF011UZZ/@@download/ENCFF011UZZ.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF391ODX	bed narrowPeak	peaks	ENCSR866QPZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ATF7-human	DNA					False	2016-07-08	ENCODE				1							ENCFF194ECV, ENCFF583FAG	6237782	ENCODE Processing Pipeline	0634a0c370f52b3fb44a0b1cc19ef991		https://www.encodeproject.org/files/ENCFF391ODX/@@download/ENCFF391ODX.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, antibody characterized with exemption			
ENCFF752PSY	bed narrowPeak	peaks	ENCSR066BZZ	ChIP-seq	CL:0000103	bipolar neuron	in vitro differentiated cells	Homo sapiens	doxycycline hyclate	0.5 μg/mL	4 day	CTCF-human	DNA					False	2016-11-24	ENCODE				1							ENCFF093OXI, ENCFF571VVW, ENCFF773HIM	6715847	ENCODE Processing Pipeline	9b478693faabb4574d0ff5fd47c56a59		https://www.encodeproject.org/files/ENCFF752PSY/@@download/ENCFF752PSY.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	NTR biosample		
ENCFF824GTA	bed narrowPeak	peaks	ENCSR101FJS	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TBL1XR1-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF241DWU, ENCFF863VMN	5279146	ENCODE Processing Pipeline	bb53b1ef60e65b9cb73ae2aeb7befbb2		https://www.encodeproject.org/files/ENCFF824GTA/@@download/ENCFF824GTA.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF471MPD	bed narrowPeak	peaks	ENCSR530XQI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				L3MBTL2-human	DNA					False	2016-06-23	ENCODE				1							ENCFF011MCR, ENCFF581ZJL	7133917	ENCODE Processing Pipeline	eac7607be827468e48cf0c599196747a		https://www.encodeproject.org/files/ENCFF471MPD/@@download/ENCFF471MPD.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF853BNC	bed narrowPeak	peaks	ENCSR825MZS	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TAF15-human	DNA			SDS	formaldehyde	False	2018-01-16	ENCODE				1							ENCFF580VRU, ENCFF759DNX, ENCFF951UMF	6178340	ENCODE Processing Pipeline	7e4ad537c954428eea973644de103769		https://www.encodeproject.org/files/ENCFF853BNC/@@download/ENCFF853BNC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF878CWL	bed narrowPeak	peaks	ENCSR131FFJ	ChIP-seq	EFO:0005723	GM23248	cell line	Homo sapiens				EZH2-human	DNA					False	2018-03-09	ENCODE				1							ENCFF111AMD, ENCFF394XKE, ENCFF659TLW	5687086	ENCODE Processing Pipeline	a2d65d75a886fbe48e31a444a2fd9610		https://www.encodeproject.org/files/ENCFF878CWL/@@download/ENCFF878CWL.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF611BUY	bed narrowPeak	peaks	ENCSR972ZBV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ATF7-human	DNA					False	2014-07-07	ENCODE				1							ENCFF581ZJL, ENCFF796HOG	7178552	ENCODE Processing Pipeline	0318f8b1097e2c3bce0291956fb04434		https://www.encodeproject.org/files/ENCFF611BUY/@@download/ENCFF611BUY.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF299COL	bed narrowPeak	peaks	ENCSR000DPP	ChIP-seq	NTR:0000479	AG09309	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF004OMB, ENCFF137BYR	3925324	ENCODE Processing Pipeline	be75fd99a795d1e80cff9e274c320e41		https://www.encodeproject.org/files/ENCFF299COL/@@download/ENCFF299COL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms	NTR biosample	control insufficient read depth, insufficient read depth	missing control alignments
ENCFF417KAW	bed narrowPeak	peaks	ENCSR240PRQ	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-10-19	ENCODE				1							ENCFF098SJQ, ENCFF420OJT, ENCFF467JND	6003450	ENCODE Processing Pipeline	682c4829a61fc9d745876d973a2cc3cf		https://www.encodeproject.org/files/ENCFF417KAW/@@download/ENCFF417KAW.bed.gz	hg19			released	low read length, mixed run types, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF938AEH	bed narrowPeak	peaks	ENCSR697CUP	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				HCFC1-human	DNA					False	2016-02-16	ENCODE				1							ENCFF409MLU, ENCFF583FAG	6619002	ENCODE Processing Pipeline	a7db975eef09f860be95d3defe5e290f		https://www.encodeproject.org/files/ENCFF938AEH/@@download/ENCFF938AEH.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF471IVB	bed narrowPeak	peaks	ENCSR439WAF	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				E4F1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF095GKP, ENCFF941TZZ	6201438	ENCODE Processing Pipeline	14c7c83fca1383b1ca696bb3b1e6943d		https://www.encodeproject.org/files/ENCFF471IVB/@@download/ENCFF471IVB.bed.gz	hg19			released	mild to moderate bottlenecking	experiment not submitted to GEO	partially characterized antibody	
ENCFF259GFJ	bed narrowPeak	peaks	ENCSR635EXI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZSCAN29-human	DNA					False	2017-11-20	ENCODE				1							ENCFF098RVJ, ENCFF581ZJL	6608166	ENCODE Processing Pipeline	be6550ae5866d12ab52518bf4a4365df		https://www.encodeproject.org/files/ENCFF259GFJ/@@download/ENCFF259GFJ.bed.gz	hg19			released		experiment not submitted to GEO		
ENCFF205PYK	bed narrowPeak	peaks	ENCSR871KYB	ChIP-seq	EFO:0007950	GM23338	induced pluripotent stem cell line	Homo sapiens				REST-human	DNA					False	2018-03-06	ENCODE				1							ENCFF931MGR, ENCFF956QBZ	4564076	ENCODE Processing Pipeline	da0cef82e0ce1a7837c392c184a983d3		https://www.encodeproject.org/files/ENCFF205PYK/@@download/ENCFF205PYK.bed.gz	hg19			released	antibody characterized with exemption	experiment not submitted to GEO	unreplicated experiment	
ENCFF226PXS	bed narrowPeak	peaks	ENCSR897ZXU	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				E2F8-human	DNA					False	2018-01-26	ENCODE				1							ENCFF583FAG, ENCFF966KGE	6030845	ENCODE Processing Pipeline	5e05072604fd7ecf5cbbaeaa3bbf5a07		https://www.encodeproject.org/files/ENCFF226PXS/@@download/ENCFF226PXS.bed.gz	hg19			released		experiment not submitted to GEO	partially characterized antibody	
ENCFF474LJV	bed narrowPeak	peaks	ENCSR520VTO	ChIP-seq	EFO:0005907	OCI-LY1	cell line	Homo sapiens				EZH2-human	DNA		see document	see document		False	2017-11-19	ENCODE				1							ENCFF265DDE, ENCFF509ZPI, ENCFF977OUD	6111088	ENCODE Processing Pipeline	1447014b2b607134590318d2a0a7d1a0		https://www.encodeproject.org/files/ENCFF474LJV/@@download/ENCFF474LJV.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF306SXM	bed narrowPeak	peaks	ENCSR664OKA	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				ELK1-human	DNA					False	2016-09-01	ENCODE				1							ENCFF422DHE, ENCFF880YHS	3733913	ENCODE Processing Pipeline	a224326c7572386905d0b2f8fbdc381f		https://www.encodeproject.org/files/ENCFF306SXM/@@download/ENCFF306SXM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	duplicate lane review		
ENCFF768KKE	bed narrowPeak	peaks	ENCSR000AHD	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF479YGR, ENCFF719RCX, ENCFF754DME	5341806	ENCODE Processing Pipeline	d74ba6964064a6af20aa766c161699f4		https://www.encodeproject.org/files/ENCFF768KKE/@@download/ENCFF768KKE.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth			
ENCFF006UUP	bed narrowPeak	peaks	ENCSR069DPL	ChIP-seq	NTR:0000711	neural progenitor cell	in vitro differentiated cells	Homo sapiens				EZH2-human	DNA					False	2017-11-16	ENCODE				1							ENCFF387KXA, ENCFF725YPX, ENCFF762JSN	7277881	ENCODE Processing Pipeline	3f58fb8da032c56fc98e1777324a5056		https://www.encodeproject.org/files/ENCFF006UUP/@@download/ENCFF006UUP.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF827ONU	bed narrowPeak	peaks	ENCSR072EUE	ChIP-seq	EFO:0005907	OCI-LY1	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-11-13	ENCODE				1							ENCFF206ISZ, ENCFF265DDE, ENCFF509ZPI	6330332	ENCODE Processing Pipeline	0addb58adbc441e8f0f1cb4d50308db0		https://www.encodeproject.org/files/ENCFF827ONU/@@download/ENCFF827ONU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF716GBZ	bed narrowPeak	peaks	ENCSR815ZDS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SREBF1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF335IPE, ENCFF592VTW	4513228	ENCODE Processing Pipeline	38f599db4f85e1edafe6c586428f50b8		https://www.encodeproject.org/files/ENCFF716GBZ/@@download/ENCFF716GBZ.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF060XZX	bed narrowPeak	peaks	ENCSR888XZK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TCF7L2-human	DNA					False	2016-07-28	ENCODE				1							ENCFF335IPE, ENCFF833DBR	4381264	ENCODE Processing Pipeline	383e6889efb44997cec370ab5d17c325		https://www.encodeproject.org/files/ENCFF060XZX/@@download/ENCFF060XZX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF041CMD	bed narrowPeak	peaks	ENCSR231ENE	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				ARID3A-human	DNA					False	2016-11-17	ENCODE				1							ENCFF049MPQ, ENCFF204XOT, ENCFF583FAG	6417161	ENCODE Processing Pipeline	2388e8251181efb72ad8fb0612e20314		https://www.encodeproject.org/files/ENCFF041CMD/@@download/ENCFF041CMD.bed.gz	hg19			released	borderline replicate concordance			
ENCFF633FJC	bed narrowPeak	peaks	ENCSR788XNX	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				RFX1-human	DNA					False	2016-06-23	ENCODE				1							ENCFF293RDA, ENCFF583FAG	6343924	ENCODE Processing Pipeline	b1116d315978a49710766d803a54c583		https://www.encodeproject.org/files/ENCFF633FJC/@@download/ENCFF633FJC.bed.gz	hg19			released	low read depth			
ENCFF943FOK	bed narrowPeak	peaks	ENCSR882ICT	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				ZNF384-human	DNA					False	2016-11-17	ENCODE				1							ENCFF040GAR, ENCFF560YXG, ENCFF760DHW	6965873	ENCODE Processing Pipeline	32c9e395a5199e54f2f4e7264ba0cd46		https://www.encodeproject.org/files/ENCFF943FOK/@@download/ENCFF943FOK.bed.gz	hg19			released				
ENCFF012TME	bed narrowPeak	peaks	ENCSR042TWZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				SNIP1-human	DNA					False	2017-06-23	ENCODE				1							ENCFF222WFW, ENCFF447KVS, ENCFF823USR	6153180	ENCODE Processing Pipeline	13d20948c87dcdc52b12601b72938cc3		https://www.encodeproject.org/files/ENCFF012TME/@@download/ENCFF012TME.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity			
ENCFF019TVN	bed narrowPeak	peaks	ENCSR205SKQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				YBX1-human	DNA					False	2016-08-24	ENCODE				1							ENCFF404VIO, ENCFF941TZZ	6167163	ENCODE Processing Pipeline	3ea79eef8b09498fa98e859900b7a667		https://www.encodeproject.org/files/ENCFF019TVN/@@download/ENCFF019TVN.bed.gz	hg19			released	file validation error, borderline replicate concordance, antibody characterized with exemption	mismatched file status		
ENCFF816GZA	bed narrowPeak	peaks	ENCSR145XQO	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				HDGF-human	DNA					False	2016-08-24	ENCODE				1							ENCFF287SKW, ENCFF330CTW, ENCFF941TZZ	7055337	ENCODE Processing Pipeline	24bd8f967eba6f9dec0cbc4183746bcc		https://www.encodeproject.org/files/ENCFF816GZA/@@download/ENCFF816GZA.bed.gz	hg19			released	file validation error, antibody characterized with exemption	mismatched file status		
ENCFF714YWI	bed narrowPeak	peaks	ENCSR124AIG	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				FOS-human	DNA					False	2016-12-19	ENCODE				1							ENCFF111WZN, ENCFF880YHS	5092773	ENCODE Processing Pipeline	940cbab842c01fec6fd2bb43df582e2d		https://www.encodeproject.org/files/ENCFF714YWI/@@download/ENCFF714YWI.bed.gz	hg19			released	low read length, low read depth	duplicate lane review		
ENCFF313WJM	bed narrowPeak	peaks	ENCSR742TMU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF282-human	DNA					False	2018-01-26	ENCODE				1							ENCFF581ZJL, ENCFF860EBI	6856971	ENCODE Processing Pipeline	a0f9ce9c8a662389415db892470f3db3		https://www.encodeproject.org/files/ENCFF313WJM/@@download/ENCFF313WJM.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	experiment not submitted to GEO	partially characterized antibody	
ENCFF121FBN	bed narrowPeak	peaks	ENCSR760UKJ	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				ARNT-human	DNA					False	2017-04-14	ENCODE				1							ENCFF529BVI, ENCFF668PAZ, ENCFF772FBN	6297910	ENCODE Processing Pipeline	3ee91ea72d401a22aed1803105b3b309		https://www.encodeproject.org/files/ENCFF121FBN/@@download/ENCFF121FBN.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF502WVO	bed narrowPeak	peaks	ENCSR565XSL	ChIP-seq	EFO:0006711	OCI-LY7	cell line	Homo sapiens				EZH2phosphoT487-human	DNA		see document	see document		False	2018-02-06	ENCODE				1							ENCFF004XDI, ENCFF602DKP, ENCFF983AFA	5704662	ENCODE Processing Pipeline	58578ac259133d6006f8943a34a9f144		https://www.encodeproject.org/files/ENCFF502WVO/@@download/ENCFF502WVO.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, mixed run types, low read depth, antibody characterized with exemption, mixed read lengths	NTR biosample, experiment not submitted to GEO		
ENCFF536CTG	bed narrowPeak	peaks	ENCSR265ARE	ChIP-seq	EFO:0007752	VCaP	cell line	Homo sapiens				CTCF-human	DNA					False	2017-07-21	ENCODE				1							ENCFF006HDB, ENCFF091BWQ, ENCFF357UZL	6924968	ENCODE Processing Pipeline	c316c423c4fe09a672d22c1bbe4350ed		https://www.encodeproject.org/files/ENCFF536CTG/@@download/ENCFF536CTG.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF409HKO	bed narrowPeak	peaks	ENCSR197ALX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDGF-human	DNA					False	2016-08-05	ENCODE				1							ENCFF581ZJL, ENCFF737QLL	7041480	ENCODE Processing Pipeline	03f4452079d0de2dd45f193dde177e9a		https://www.encodeproject.org/files/ENCFF409HKO/@@download/ENCFF409HKO.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF862QRJ	bed narrowPeak	peaks	ENCSR597VGC	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ETV6-human	DNA					False	2014-07-07	ENCODE				1							ENCFF102NUJ, ENCFF941TZZ	5524368	ENCODE Processing Pipeline	7782263881bcd6ed3afcd8274cfde3ef		https://www.encodeproject.org/files/ENCFF862QRJ/@@download/ENCFF862QRJ.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity			
ENCFF355LBT	bed narrowPeak	peaks	ENCSR780OZE	ChIP-seq	NTR:0001226	Parathyroid adenoma	tissue	Homo sapiens				CTCF-human	DNA		see document	see document		False	2017-12-08	ENCODE				1							ENCFF349CTQ, ENCFF453BFT	5107706	ENCODE Processing Pipeline	5965f62be4f7afc2c177bccaa6812360		https://www.encodeproject.org/files/ENCFF355LBT/@@download/ENCFF355LBT.bed.gz	hg19			released	low read length, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment	
ENCFF331EWI	bed narrowPeak	peaks	ENCSR557JTZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				GTF2F1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF059RII, ENCFF583FAG	6061709	ENCODE Processing Pipeline	6b5c1a30276be20896438a43bbae02db		https://www.encodeproject.org/files/ENCFF331EWI/@@download/ENCFF331EWI.bed.gz	hg19			released				
ENCFF044AVI	bed narrowPeak	peaks	ENCSR623KNM	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				ELK1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF035OKO, ENCFF863STQ	3769598	ENCODE Processing Pipeline	d0e7813cc5fb470265ea607df89a1c7c		https://www.encodeproject.org/files/ENCFF044AVI/@@download/ENCFF044AVI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	duplicate lane review		
ENCFF973BDU	bed narrowPeak	peaks	ENCSR337NWW	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				HDAC2-human	DNA					False	2016-10-14	ENCODE				1							ENCFF094VXQ, ENCFF449NNE	6388312	ENCODE Processing Pipeline	c9f95953fcd2b1daed4779f4ac49debe		https://www.encodeproject.org/files/ENCFF973BDU/@@download/ENCFF973BDU.bed.gz	hg19			released				
ENCFF411FEE	bed narrowPeak	peaks	ENCSR168SMX	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				NR2F2-human	DNA					False	2016-08-18	ENCODE				1							ENCFF641GTE, ENCFF654EHF, ENCFF991UTU	6604714	ENCODE Processing Pipeline	9f5421a40002adb4b322146e9a7d749e		https://www.encodeproject.org/files/ENCFF411FEE/@@download/ENCFF411FEE.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF045SMN	bed narrowPeak	peaks	ENCSR077DKV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CREM-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH	6212068	ENCODE Processing Pipeline	4d303f0bcffe18274deecf13520dfd59		https://www.encodeproject.org/files/ENCFF045SMN/@@download/ENCFF045SMN.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF768INF	bed narrowPeak	peaks	ENCSR364SNE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				POU5F1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF032JWA, ENCFF335IPE	4634504	ENCODE Processing Pipeline	60e806c1ceb638a3a0c87f1778337a5c		https://www.encodeproject.org/files/ENCFF768INF/@@download/ENCFF768INF.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	experiment not submitted to GEO	partially characterized antibody	
ENCFF020HWP	bed narrowPeak	peaks	ENCSR352QSB	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				RXRA-human	DNA					False	2017-12-01	ENCODE				1							ENCFF654EHF, ENCFF991UTU, ENCFF996GBL	6634671	ENCODE Processing Pipeline	0d09ae1e0cb8d35555e34cc86cf8e059		https://www.encodeproject.org/files/ENCFF020HWP/@@download/ENCFF020HWP.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF521INM	bed narrowPeak	peaks	ENCSR897JAS	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CREB1-human	DNA					False	2016-07-08	ENCODE				1							ENCFF006NUZ, ENCFF049MPQ	6861644	ENCODE Processing Pipeline	69eef2d9139100c43c30084d19211fe5		https://www.encodeproject.org/files/ENCFF521INM/@@download/ENCFF521INM.bed.gz	hg19			released				
ENCFF367XOV	bed narrowPeak	peaks	ENCSR066TET	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				RFX1-human	DNA					False	2016-06-23	ENCODE				1							ENCFF049MPQ, ENCFF583FAG, ENCFF902IUI	7008420	ENCODE Processing Pipeline	e2ce9fc675b4c8b24e51ac51d5066ae0		https://www.encodeproject.org/files/ENCFF367XOV/@@download/ENCFF367XOV.bed.gz	hg19			released	mild to moderate bottlenecking			
ENCFF779NYR	bed narrowPeak	peaks	ENCSR109ODF	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				HES1-human	DNA					False	2017-04-14	ENCODE				1							ENCFF049MPQ, ENCFF244LMD, ENCFF583FAG	6714629	ENCODE Processing Pipeline	25112968c261bdd39f067c631145dab9		https://www.encodeproject.org/files/ENCFF779NYR/@@download/ENCFF779NYR.bed.gz	hg19			released				
ENCFF950LOX	bed narrowPeak	peaks	ENCSR230ZWH	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				RAD21-human	DNA					False	2016-10-12	ENCODE				1							ENCFF359TIO, ENCFF807CUF, ENCFF821FIW	6769628	ENCODE Processing Pipeline	21664ea95b8533ac6d45884f5355a655		https://www.encodeproject.org/files/ENCFF950LOX/@@download/ENCFF950LOX.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF310CYQ	bed narrowPeak	peaks	ENCSR009TKN	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				RCOR1-human	DNA					False	2017-06-15	ENCODE				1							ENCFF650GFB, ENCFF764WTL	5739985	ENCODE Processing Pipeline	f0e8d29440d7babf6587f2fa8f009564		https://www.encodeproject.org/files/ENCFF310CYQ/@@download/ENCFF310CYQ.bed.gz	hg19			released	low read length, antibody characterized with exemption			
ENCFF469FSE	bed narrowPeak	peaks	ENCSR882ZTS	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				eGFP-ZBTB11-human	DNA				formaldehyde	False	2016-10-07	ENCODE				1							ENCFF583PRY	6657105	ENCODE Processing Pipeline	75ffa7c0093f0cc483f5d0866c69b568		https://www.encodeproject.org/files/ENCFF469FSE/@@download/ENCFF469FSE.bed.gz	hg19			released	low read depth, missing genetic modification characterization			missing control alignments
ENCFF086DEW	bed narrowPeak	peaks	ENCSR634OAQ	ChIP-seq	EFO:0001221	NCI-H929	cell line	Homo sapiens				CTCF-human	DNA					False	2017-11-29	ENCODE				1							ENCFF050WDN, ENCFF238MHO, ENCFF934QBD	6179336	ENCODE Processing Pipeline	97c599d1072e34bae8d4ead3ccbf6c97		https://www.encodeproject.org/files/ENCFF086DEW/@@download/ENCFF086DEW.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF519MIS	bed narrowPeak	peaks	ENCSR541AMF	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				CTCF-human	DNA					False	2017-11-13	ENCODE				1							ENCFF110XXU, ENCFF989ZJD, ENCFF995SUS	6828886	ENCODE Processing Pipeline	0d6b3d4ec9153dedd86eccc6fe80f475		https://www.encodeproject.org/files/ENCFF519MIS/@@download/ENCFF519MIS.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		
ENCFF030PHB	bed narrowPeak	peaks	ENCSR350ORK	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				GABPA-human	DNA					False	2016-09-09	ENCODE				1							ENCFF336QNE, ENCFF991UTU	5635996	ENCODE Processing Pipeline	1eb2c8b251cda7f036a4aa014221b88a		https://www.encodeproject.org/files/ENCFF030PHB/@@download/ENCFF030PHB.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF721KHE	bed narrowPeak	peaks	ENCSR000BQI	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				CEBPB-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF275GCD, ENCFF382BNF	4408936	ENCODE Processing Pipeline	c2ba84a109452733974208070d5e112d		https://www.encodeproject.org/files/ENCFF721KHE/@@download/ENCFF721KHE.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth, severe bottlenecking	
ENCFF891ZCM	bed narrowPeak	peaks	ENCSR000BHC	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZBTB33-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF958RTR, ENCFF963NKM	4235005	ENCODE Processing Pipeline	f22938eb636e024178ae8d1a523c9bab		https://www.encodeproject.org/files/ENCFF891ZCM/@@download/ENCFF891ZCM.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF332JOV	bed narrowPeak	peaks	ENCSR897MMC	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				JUNB-human	DNA					False	2016-06-13	ENCODE				1							ENCFF273TMW, ENCFF313NWV	5852019	ENCODE Processing Pipeline	808c26e98d7e74b9fb8bd0df63eea746		https://www.encodeproject.org/files/ENCFF332JOV/@@download/ENCFF332JOV.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption			
ENCFF524UVY	bed narrowPeak	peaks	ENCSR518WPL	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NR2F6-human	DNA					False	2016-06-13	ENCODE				1							ENCFF108FPL, ENCFF574HZP, ENCFF969DYI	6249046	ENCODE Processing Pipeline	be7e45a3892531cd835e47c75e9bd147		https://www.encodeproject.org/files/ENCFF524UVY/@@download/ENCFF524UVY.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF327WVX	bed narrowPeak	peaks	ENCSR997GPO	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				NFRKB-human	DNA					False	2016-11-17	ENCODE				1							ENCFF258YYG, ENCFF529BVI, ENCFF772FBN	6722915	ENCODE Processing Pipeline	6511f93ad87cabb1b0bea39e8dde0ea3		https://www.encodeproject.org/files/ENCFF327WVX/@@download/ENCFF327WVX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity			
ENCFF574BPV	bed narrowPeak	peaks	ENCSR000DTI	ChIP-seq	CL:0000746	cardiac muscle cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF234EAH, ENCFF599WUT	4513051	ENCODE Processing Pipeline	b1ba56e9d74ea6d4137505e05b3e4f0f		https://www.encodeproject.org/files/ENCFF574BPV/@@download/ENCFF574BPV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF113OOA	bed narrowPeak	peaks	ENCSR000DOZ	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	ethanol	0.01 percent	36.0 hour	STAT3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF153RSF, ENCFF502MJK	2989027	ENCODE Processing Pipeline	9d1607946b585c506f24c1218c08d025		https://www.encodeproject.org/files/ENCFF113OOA/@@download/ENCFF113OOA.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, missing genetic modification characterization, low read depth	biological replicates with identical biosample	insufficient read depth, severe bottlenecking	
ENCFF512TAK	bed narrowPeak	peaks	ENCSR551ZDZ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MTA2-human	DNA					False	2016-06-14	ENCODE				1							ENCFF583FAG, ENCFF828SPJ	5439904	ENCODE Processing Pipeline	ec642a5190a85614893a1b2ebc9bbeec		https://www.encodeproject.org/files/ENCFF512TAK/@@download/ENCFF512TAK.bed.gz	hg19			released	borderline replicate concordance			
ENCFF600JKB	bed narrowPeak	peaks	ENCSR000BNJ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				HNF4G-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF674MDC	5131602	ENCODE Processing Pipeline	5d104bf3b5eaf30497d4e19ebd2ade92		https://www.encodeproject.org/files/ENCFF600JKB/@@download/ENCFF600JKB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		missing control alignments
ENCFF680MAX	bed narrowPeak	peaks	ENCSR000DNC	ChIP-seq	CL:0000312	keratinocyte	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF235OMO, ENCFF455HQY, ENCFF568IYC	2565747	ENCODE Processing Pipeline	5809b16b5873fc653245eecdc613075a		https://www.encodeproject.org/files/ENCFF680MAX/@@download/ENCFF680MAX.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF436EEZ	bed narrowPeak	peaks	ENCSR189TRZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TCF12-human	DNA					False	2016-07-08	ENCODE				1							ENCFF581ZJL, ENCFF702MHE	6757441	ENCODE Processing Pipeline	43e8a65d9d33f9e5bf8e0dfaccc72e29		https://www.encodeproject.org/files/ENCFF436EEZ/@@download/ENCFF436EEZ.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF901YUN	bed narrowPeak	peaks	ENCSR000BHB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				EP300-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF234DXO, ENCFF958RTR	4351005	ENCODE Processing Pipeline	b23728d0a6808390a3eddef6eaf3e13b		https://www.encodeproject.org/files/ENCFF901YUN/@@download/ENCFF901YUN.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample	insufficient read depth, insufficient replicate concordance	
ENCFF607MDM	bed narrowPeak	peaks	ENCSR051OUX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFATC3-human	DNA					False	2018-01-26	ENCODE				1							ENCFF208FMF, ENCFF581ZJL	6879508	ENCODE Processing Pipeline	745e46fe25c71f7f3cc3aeec874591ee		https://www.encodeproject.org/files/ENCFF607MDM/@@download/ENCFF607MDM.bed.gz	hg19			released	mild to moderate bottlenecking	experiment not submitted to GEO	partially characterized antibody	
ENCFF416FBH	bed narrowPeak	peaks	ENCSR331GDC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZBTB11-human	DNA					False	2016-06-28	ENCODE				1							ENCFF144CPG, ENCFF227XXD, ENCFF454QBD	6354589	ENCODE Processing Pipeline	9838d379404171f2fb9406628afb8ef6		https://www.encodeproject.org/files/ENCFF416FBH/@@download/ENCFF416FBH.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity, antibody characterized with exemption			
ENCFF492QMD	bed narrowPeak	peaks	ENCSR000EGZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MXI1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF710NTS, ENCFF976PFK	4545903	ENCODE Processing Pipeline	0a0487aed9dc6fe659d246aa985ef4f2		https://www.encodeproject.org/files/ENCFF492QMD/@@download/ENCFF492QMD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF420LVZ	bed narrowPeak	peaks	ENCSR000DZL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF143-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF420MOQ, ENCFF780HMW	1202287	ENCODE Processing Pipeline	9a03c7827ce76a74f9da2efe2a493131		https://www.encodeproject.org/files/ENCFF420LVZ/@@download/ENCFF420LVZ.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample	control insufficient read depth, insufficient replicate concordance	
ENCFF735NAF	bed narrowPeak	peaks	ENCSR000BMG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDAC2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF223OSD, ENCFF701KUD	2621077	ENCODE Processing Pipeline	2a64b523b1acf836ce4e073673ed2e2c		https://www.encodeproject.org/files/ENCFF735NAF/@@download/ENCFF735NAF.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking	biological replicates with identical biosample	poor library complexity, severe bottlenecking	extremely low read depth
ENCFF515ZED	bed narrowPeak	peaks	ENCSR000BPF	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	TAF1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF225AWF, ENCFF864UEQ	6303636	ENCODE Processing Pipeline	9604b508b4449dfdef87a11d37edcb16		https://www.encodeproject.org/files/ENCFF515ZED/@@download/ENCFF515ZED.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance	biological replicates with identical biosample		
ENCFF327NKC	bed narrowPeak	peaks	ENCSR000BPZ	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	ZBTB33-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF226UHN, ENCFF864UEQ	5712784	ENCODE Processing Pipeline	891baaf476e37bdbaa60e7d39af1a6f4		https://www.encodeproject.org/files/ENCFF327NKC/@@download/ENCFF327NKC.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF412BGE	bed narrowPeak	peaks	ENCSR000DVI	ChIP-seq	CL:0002586	retinal pigment epithelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF178SLS, ENCFF831AXW	4375823	ENCODE Processing Pipeline	6757cdb64666a5a94b6ff783a457ba11		https://www.encodeproject.org/files/ENCFF412BGE/@@download/ENCFF412BGE.bed.gz	hg19			released	control low read depth, low read length, low read depth, inconsistent platforms			
ENCFF164IAN	bed narrowPeak	peaks	ENCSR000EBY	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				MYC-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF275SJP, ENCFF599MVB	4078586	ENCODE Processing Pipeline	5bef68690b866c5d75668ac8ea9c4461		https://www.encodeproject.org/files/ENCFF164IAN/@@download/ENCFF164IAN.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF211MMB	bed narrowPeak	peaks	ENCSR000DUM	ChIP-seq	EFO:0005710	HFF-Myc	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF060JAA, ENCFF198DHL	4437499	ENCODE Processing Pipeline	7cfbed440f61158aeef30feba19472d0		https://www.encodeproject.org/files/ENCFF211MMB/@@download/ENCFF211MMB.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking			missing control alignments
ENCFF546CXR	bed narrowPeak	peaks	ENCSR000BOZ	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF080EVD, ENCFF463UJR	4984384	ENCODE Processing Pipeline	169155a13bffa2c6c60910b7437a4829		https://www.encodeproject.org/files/ENCFF546CXR/@@download/ENCFF546CXR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF415ZQD	bed narrowPeak	peaks	ENCSR000BLS	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				RAD21-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF977AXY	5058184	ENCODE Processing Pipeline	bf0d5046b7b4d57f1e3654576af1f494		https://www.encodeproject.org/files/ENCFF415ZQD/@@download/ENCFF415ZQD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF803FZY	bed narrowPeak	peaks	ENCSR000FCC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFE2-human	DNA		see document	see document		False	2014-07-07	ENCODE				1							ENCFF103CZU, ENCFF578ISP	5583357	ENCODE Processing Pipeline	b465b7c2b84f5f8fb8b676d502b35b66		https://www.encodeproject.org/files/ENCFF803FZY/@@download/ENCFF803FZY.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF535RGW	bed narrowPeak	peaks	ENCSR000BKD	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF454STL	5341872	ENCODE Processing Pipeline	bf292408039660e5ac574d732e4902ee		https://www.encodeproject.org/files/ENCFF535RGW/@@download/ENCFF535RGW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF056RFC	bed narrowPeak	peaks	ENCSR000EUP	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				MAX-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF509ANO, ENCFF764OCO	1850944	ENCODE Processing Pipeline	52d0d1e1ab5acb6750034d8802f87d99		https://www.encodeproject.org/files/ENCFF056RFC/@@download/ENCFF056RFC.bed.gz	hg19			released	borderline replicate concordance	biological replicates with identical biosample	insufficient read length	extremely low read depth
ENCFF847FHY	bed narrowPeak	peaks	ENCSR429QPP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				FOXM1-human	DNA					False	2017-01-27	ENCODE				1							ENCFF581ZJL, ENCFF866PHS	6320438	ENCODE Processing Pipeline	2aa8318060a352cb9fc918b08c5f97b7		https://www.encodeproject.org/files/ENCFF847FHY/@@download/ENCFF847FHY.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF999RRH	bed narrowPeak	peaks	ENCSR833FWC	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				CTCF-human	DNA					False	2016-10-25	ENCODE				1							ENCFF347PVY, ENCFF791LLR	6620179	ENCODE Processing Pipeline	038ec91b4e74e9a4e0334923115eabbb		https://www.encodeproject.org/files/ENCFF999RRH/@@download/ENCFF999RRH.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF155WKH	bed narrowPeak	peaks	ENCSR996DUT	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				JUN-human	DNA					False	2014-07-07	ENCODE				1							ENCFF416AFC, ENCFF863STQ	4436264	ENCODE Processing Pipeline	fde6209238af978fbcf2595e0e0d151f		https://www.encodeproject.org/files/ENCFF155WKH/@@download/ENCFF155WKH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, antibody characterized with exemption			
ENCFF017OSU	bed narrowPeak	peaks	ENCSR000BNQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BCL3-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF032GHF, ENCFF963CVB	5216391	ENCODE Processing Pipeline	5746764b38acb3c4e39b1660aad372a7		https://www.encodeproject.org/files/ENCFF017OSU/@@download/ENCFF017OSU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF713DFK	bed narrowPeak	peaks	ENCSR731LHZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				E4F1-human	DNA					False	2018-01-26	ENCODE				1							ENCFF581ZJL, ENCFF924KFO	6995781	ENCODE Processing Pipeline	7ac0da1320eb4d89fc2a472ee1b731e8		https://www.encodeproject.org/files/ENCFF713DFK/@@download/ENCFF713DFK.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	experiment not submitted to GEO, out of date analysis	partially characterized antibody	
ENCFF471HFA	bed narrowPeak	peaks	ENCSR000BLB	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF102JFM, ENCFF279XQE	3936542	ENCODE Processing Pipeline	48ba54da133e20845e8b851440f51c27		https://www.encodeproject.org/files/ENCFF471HFA/@@download/ENCFF471HFA.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF943DQA	bed narrowPeak	peaks	ENCSR038RXU	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				eGFP-GABPA-human	DNA					False	2016-06-13	ENCODE				1							ENCFF513LAW, ENCFF862PGC	5600429	ENCODE Processing Pipeline	a65d91c6b7d634fbc7c41b44caf5c752		https://www.encodeproject.org/files/ENCFF943DQA/@@download/ENCFF943DQA.bed.gz	hg19			released	control low read depth, low read depth, missing genetic modification characterization			
ENCFF274KQN	bed narrowPeak	peaks	ENCSR475SOC	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				eGFP-ELF1-human	DNA					False	2016-06-13	ENCODE				1							ENCFF275QSN, ENCFF708IMW	6425003	ENCODE Processing Pipeline	134bd6befc0c6c86a15c1fa9a116b1ca		https://www.encodeproject.org/files/ENCFF274KQN/@@download/ENCFF274KQN.bed.gz	hg19			released	missing genetic modification characterization			
ENCFF054TZW	bed narrowPeak	peaks	ENCSR000DZZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TBP-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF498BXQ, ENCFF545DZO	4520409	ENCODE Processing Pipeline	def22d49fd1bea246ad3a6729ac518c9		https://www.encodeproject.org/files/ENCFF054TZW/@@download/ENCFF054TZW.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF566UPM	bed narrowPeak	peaks	ENCSR484DDO	ChIP-seq	UBERON:0001150	body of pancreas	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF106EBG, ENCFF877TJY	5615141	ENCODE Processing Pipeline	e03992ef808a39698d072763307d482a		https://www.encodeproject.org/files/ENCFF566UPM/@@download/ENCFF566UPM.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF988BKX	bed narrowPeak	peaks	ENCSR000BMN	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF044MEQ, ENCFF647PGL	3447852	ENCODE Processing Pipeline	e23cbea553f3d4f38788cfd9a7e5777b		https://www.encodeproject.org/files/ENCFF988BKX/@@download/ENCFF988BKX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF729AWY	bed narrowPeak	peaks	ENCSR000DSU	ChIP-seq	CL:0002606	astrocyte of the spinal cord	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF644FRD, ENCFF686TPQ	4174778	ENCODE Processing Pipeline	ace2ec52cf2dfa4692feb164ebf7958a		https://www.encodeproject.org/files/ENCFF729AWY/@@download/ENCFF729AWY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms			
ENCFF714FTS	bed narrowPeak	peaks	ENCSR000EGW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SMC3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF359UWD, ENCFF710NTS	3707352	ENCODE Processing Pipeline	0a5fdaca0482075d611610ccfc931034		https://www.encodeproject.org/files/ENCFF714FTS/@@download/ENCFF714FTS.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF618WVP	bed narrowPeak	peaks	ENCSR000DKN	ChIP-seq	EFO:0002782	H54	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF424BXF, ENCFF440WDV	5442002	ENCODE Processing Pipeline	df187c63a8ffb1ad9e723b1aa0a518ad		https://www.encodeproject.org/files/ENCFF618WVP/@@download/ENCFF618WVP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample		
ENCFF383NCL	bed narrowPeak	peaks	ENCSR430TEE	ChIP-seq	UBERON:0004264	lower leg skin	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF553WEE, ENCFF773QXS	4852087	ENCODE Processing Pipeline	88ab6ea26eedfdb4b74aabdcc2816b3e		https://www.encodeproject.org/files/ENCFF383NCL/@@download/ENCFF383NCL.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF972PDN	bed narrowPeak	peaks	ENCSR000BGE	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SRF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF187ZGJ, ENCFF416BIN, ENCFF818ZLY	4984004	ENCODE Processing Pipeline	96eceb07f8556ee2b0b3adf000ed21c5		https://www.encodeproject.org/files/ENCFF972PDN/@@download/ENCFF972PDN.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF890UER	bed narrowPeak	peaks	ENCSR000EDY	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				BRCA1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF100HQM, ENCFF107SKX	4498189	ENCODE Processing Pipeline	0c7c651eacc8d99e9bf02c9351327825		https://www.encodeproject.org/files/ENCFF890UER/@@download/ENCFF890UER.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF997MQT	bed narrowPeak	peaks	ENCSR000BMO	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXA1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF346RZT, ENCFF587IJL	5132126	ENCODE Processing Pipeline	5ca2e6d07e1b6f5a6600f2c6724c35d7		https://www.encodeproject.org/files/ENCFF997MQT/@@download/ENCFF997MQT.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF423FMQ	bed narrowPeak	peaks	ENCSR000EUL	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NR2C2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF289RZG, ENCFF420MOQ	4062549	ENCODE Processing Pipeline	0db29d195cd81743099c7368d530b510		https://www.encodeproject.org/files/ENCFF423FMQ/@@download/ENCFF423FMQ.bed.gz	hg19			released	borderline replicate concordance, low read depth		control insufficient read depth, insufficient read length	
ENCFF049FHU	bed narrowPeak	peaks	ENCSR000DWN	ChIP-seq	EFO:0002798	NB4	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF010VRA, ENCFF522BQD	4293374	ENCODE Processing Pipeline	edcc1b894b2997953c0901cfac670f49		https://www.encodeproject.org/files/ENCFF049FHU/@@download/ENCFF049FHU.bed.gz	hg19			released	low read length, low read depth			
ENCFF951TLZ	bed narrowPeak	peaks	ENCSR000BKB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MEF2A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF651UZJ, ENCFF963CVB	3978804	ENCODE Processing Pipeline	331ed73930e4199b54d6e1ee1cfaac72		https://www.encodeproject.org/files/ENCFF951TLZ/@@download/ENCFF951TLZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF549YBI	bed narrowPeak	peaks	ENCSR000BJG	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TCF12-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF455VKD, ENCFF472OOV	4308309	ENCODE Processing Pipeline	20a9468b3b2846e2aad3ced78d6492ce		https://www.encodeproject.org/files/ENCFF549YBI/@@download/ENCFF549YBI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient replicate concordance	
ENCFF657PRI	bed narrowPeak	peaks	ENCSR000DMO	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF468DTD, ENCFF602XLT	5506321	ENCODE Processing Pipeline	8f5896746d6ba3fface5a84081aac73d		https://www.encodeproject.org/files/ENCFF657PRI/@@download/ENCFF657PRI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	poor library complexity	
ENCFF886HLJ	bed narrowPeak	peaks	ENCSR000EFH	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF039HBE, ENCFF191DFR, ENCFF601AUG	5774824	ENCODE Processing Pipeline	4225baa13e5ecc5237a91792904b6ead		https://www.encodeproject.org/files/ENCFF886HLJ/@@download/ENCFF886HLJ.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF445XBY	bed narrowPeak	peaks	ENCSR000DRR	ChIP-seq	EFO:0001161	GM12874	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF044UKM, ENCFF331ASK	2213661	ENCODE Processing Pipeline	1adacb413dab633ea043a244efc1c721		https://www.encodeproject.org/files/ENCFF445XBY/@@download/ENCFF445XBY.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity		insufficient read depth	
ENCFF557TKJ	bed narrowPeak	peaks	ENCSR000BJE	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SIX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF060XMV, ENCFF958RTR	3926265	ENCODE Processing Pipeline	050cc271a271744bf736fd530aad10d0		https://www.encodeproject.org/files/ENCFF557TKJ/@@download/ENCFF557TKJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	severe bottlenecking	
ENCFF357WXQ	bed narrowPeak	peaks	ENCSR000ARE	ChIP-seq	CL:0002327	mammary epithelial cell	primary cell	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF062WDT, ENCFF355LBA, ENCFF903ATW	6636227	ENCODE Processing Pipeline	47d1c1776d43491eead30f8b588a0318		https://www.encodeproject.org/files/ENCFF357WXQ/@@download/ENCFF357WXQ.bed.gz	hg19			released	low read length, borderline replicate concordance, inconsistent platforms			
ENCFF675GZY	bed narrowPeak	peaks	ENCSR000EFO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CUX1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF353HYR, ENCFF710NTS	4975729	ENCODE Processing Pipeline	fdd0e953af4503ea9b37a6a43e52ce4c		https://www.encodeproject.org/files/ENCFF675GZY/@@download/ENCFF675GZY.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		missing control alignments
ENCFF565JQY	bed narrowPeak	peaks	ENCSR000BHD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				PAX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF032WUR, ENCFF837IOW, ENCFF917NZU	4541244	ENCODE Processing Pipeline	2b0974ffd44803847aca1d83fa6607fd		https://www.encodeproject.org/files/ENCFF565JQY/@@download/ENCFF565JQY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF247OWV	bed narrowPeak	peaks	ENCSR000BPS	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	ATF3-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF214OIG, ENCFF864UEQ	6100074	ENCODE Processing Pipeline	5746dd037249b5a268b02ecb52543883		https://www.encodeproject.org/files/ENCFF247OWV/@@download/ENCFF247OWV.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF851EOI	bed narrowPeak	peaks	ENCSR000BOX	ChIP-seq	EFO:0005234	PFSK-1	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF041XFO, ENCFF523END	4897265	ENCODE Processing Pipeline	f8533364cceb83c5cbf853228bd08260		https://www.encodeproject.org/files/ENCFF851EOI/@@download/ENCFF851EOI.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample		missing control alignments
ENCFF925WYW	bed narrowPeak	peaks	ENCSR000BQO	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	FOSL2-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF864UEQ, ENCFF983PHR	5774604	ENCODE Processing Pipeline	7b1cb45dd16f7fbfe612b1b25fdab223		https://www.encodeproject.org/files/ENCFF925WYW/@@download/ENCFF925WYW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample		missing control alignments
ENCFF792BHA	bed narrowPeak	peaks	ENCSR000BQP	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	REST-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF158ZUT, ENCFF864UEQ	6317626	ENCODE Processing Pipeline	6601f4134aebaa475a1a9a0736510c47		https://www.encodeproject.org/files/ENCFF792BHA/@@download/ENCFF792BHA.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample		
ENCFF873CLE	bed narrowPeak	peaks	ENCSR000FAU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		6.0 hour	STAT1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF457SCP, ENCFF998GMZ	2276128	ENCODE Processing Pipeline	41c577d36fc12da6bd7db479b80ba431		https://www.encodeproject.org/files/ENCFF873CLE/@@download/ENCFF873CLE.bed.gz	hg19			released	control low read depth, borderline replicate concordance	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF607IFK	bed narrowPeak	peaks	ENCSR000BIY	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	estradiol	10 nM	1 hour	ESR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF277EKP, ENCFF312WJL, ENCFF902HRT	4314834	ENCODE Processing Pipeline	1c7696a434ceb7f729b43c8829d54da5		https://www.encodeproject.org/files/ENCFF607IFK/@@download/ENCFF607IFK.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF591IMY	bed narrowPeak	peaks	ENCSR000BRD	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	FOXA1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF336HSE, ENCFF540RWT	4548314	ENCODE Processing Pipeline	798f793a84f1e3af58a15813a23217b0		https://www.encodeproject.org/files/ENCFF591IMY/@@download/ENCFF591IMY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF702WPJ	bed narrowPeak	peaks	ENCSR000BIP	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				BCL11A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF756YAE	3568604	ENCODE Processing Pipeline	71929a7a0a5c589ffb5ea443f2a8db03		https://www.encodeproject.org/files/ENCFF702WPJ/@@download/ENCFF702WPJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF487OYC	bed narrowPeak	peaks	ENCSR000BIE	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF249IWE, ENCFF346RZT	4558024	ENCODE Processing Pipeline	e6182e7855053208ac2899d09d72a51b		https://www.encodeproject.org/files/ENCFF487OYC/@@download/ENCFF487OYC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		missing control alignments
ENCFF620MYW	bed narrowPeak	peaks	ENCSR000EDW	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				SMC3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF034NHE, ENCFF107SKX	4762614	ENCODE Processing Pipeline	e6558f5adf0ae6e46c38fc48cd8e2ba7		https://www.encodeproject.org/files/ENCFF620MYW/@@download/ENCFF620MYW.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF909EYB	bed narrowPeak	peaks	ENCSR000DZJ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BHLHE40-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF758YOO	4529276	ENCODE Processing Pipeline	6afa95a3f0616f7314b161ca4616b275		https://www.encodeproject.org/files/ENCFF909EYB/@@download/ENCFF909EYB.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	duplicate lane review, biological replicates with identical biosample		
ENCFF670YGF	bed narrowPeak	peaks	ENCSR000EFU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ELK1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF526XKG, ENCFF710NTS	4642099	ENCODE Processing Pipeline	24a9177cb658f07a69141642ad4c3cf1		https://www.encodeproject.org/files/ENCFF670YGF/@@download/ENCFF670YGF.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	duplicate lane review, biological replicates with identical biosample		
ENCFF935ZZG	bed narrowPeak	peaks	ENCSR000EHG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				USF2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF710NTS, ENCFF851ZZA	4131199	ENCODE Processing Pipeline	6fc0d16772ba997c26d354f701fbefce		https://www.encodeproject.org/files/ENCFF935ZZG/@@download/ENCFF935ZZG.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF001XRE	bed narrowPeak	peaks	ENCSR000DUH	ChIP-seq	CL:1001608	foreskin fibroblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF001HNZ	718569	John Stamatoyannopoulos, UW	aacb1925e2474e71d34ee1b580cb620c		https://www.encodeproject.org/files/ENCFF001XRE/@@download/ENCFF001XRE.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity			
ENCFF002DCY	bed narrowPeak	optimal idr thresholded peaks	ENCSR000DUH	ChIP-seq	CL:1001608	foreskin fibroblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF001HNZ	680211	ENCODE Consortium Analysis Working Group	e3c022ea9f7be7acf4d1ea7ccf3b03e6		https://www.encodeproject.org/files/ENCFF002DCY/@@download/ENCFF002DCY.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity			
ENCFF017PXX	bed narrowPeak	peaks	ENCSR000DUH	ChIP-seq	CL:1001608	foreskin fibroblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF357OBP, ENCFF863WTF	3710075	ENCODE Processing Pipeline	1729cdd7966de8407ccc6a0f14a7c604		https://www.encodeproject.org/files/ENCFF017PXX/@@download/ENCFF017PXX.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity			
ENCFF227YDJ	bed narrowPeak	peaks	ENCSR000EDZ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF211KFP	5428595	ENCODE Processing Pipeline	2e18da9b55e25b5f4de4c72d10681cc9		https://www.encodeproject.org/files/ENCFF227YDJ/@@download/ENCFF227YDJ.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF562ZXJ	bed narrowPeak	peaks	ENCSR000BGF	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF259SJI, ENCFF416BIN, ENCFF818ZLY	4668469	ENCODE Processing Pipeline	ebde3d9c6eff4885283b7b709f7f18d5		https://www.encodeproject.org/files/ENCFF562ZXJ/@@download/ENCFF562ZXJ.bed.gz	hg19			released	low read length, low read depth, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF510UIU	bed narrowPeak	peaks	ENCSR000BMY	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				RAD21-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF311CJK, ENCFF963CVB	3261181	ENCODE Processing Pipeline	cf4faead6c6f80b199f1a699ec3d60c0		https://www.encodeproject.org/files/ENCFF510UIU/@@download/ENCFF510UIU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF469IRK	bed narrowPeak	peaks	ENCSR000EEL	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TBP-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF082FBL, ENCFF107SKX	5135482	ENCODE Processing Pipeline	a37810152484723f62e1ff25a439db4c		https://www.encodeproject.org/files/ENCFF469IRK/@@download/ENCFF469IRK.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF711NWL	bed narrowPeak	peaks	ENCSR000EGR	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFYA-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ	2689320	ENCODE Processing Pipeline	4c85eb9984b66a7cc5fcda6d28d945d0		https://www.encodeproject.org/files/ENCFF711NWL/@@download/ENCFF711NWL.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	insufficient read depth, insufficient read length	extremely low read depth
ENCFF479ZWB	bed narrowPeak	peaks	ENCSR000EVX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF274-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF826BOX	5855561	ENCODE Processing Pipeline	edd9eb1c92b6ea69c50d79c78e91dcc7		https://www.encodeproject.org/files/ENCFF479ZWB/@@download/ENCFF479ZWB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		
ENCFF971SGR	bed narrowPeak	peaks	ENCSR000EGP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF143-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF347FTA, ENCFF710NTS	5103569	ENCODE Processing Pipeline	db8c61fb2f09825b33c89d66fc02a24a		https://www.encodeproject.org/files/ENCFF971SGR/@@download/ENCFF971SGR.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF927WFK	bed narrowPeak	peaks	ENCSR000DYQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ESRRA-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF267FMB, ENCFF378YAW, ENCFF384RBC	4742873	ENCODE Processing Pipeline	dec30187d31bd754807fc4bf02bebd8d		https://www.encodeproject.org/files/ENCFF927WFK/@@download/ENCFF927WFK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF245IKC	bed narrowPeak	peaks	ENCSR000DOP	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	afimoxifene	1.0 μM	12.0 hour	FOS-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF028RMR, ENCFF425RUE	5868487	ENCODE Processing Pipeline	8052012c41491919ea968fdd32b5b5c7		https://www.encodeproject.org/files/ENCFF245IKC/@@download/ENCFF245IKC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity, missing genetic modification characterization	biological replicates with identical biosample, duplicate lane review		
ENCFF001USQ	bed narrowPeak	peaks	ENCSR000DLG	ChIP-seq	EFO:0005352	GM20000	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1237271	Vishwanath Iyer, UTA	77b2e33066eabb4c798a3872b8a72c11		https://www.encodeproject.org/files/ENCFF001USQ/@@download/ENCFF001USQ.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking	biological replicates with identical biosample, missing derived_from	insufficient read depth	missing control alignments
ENCFF128FLJ	bed narrowPeak	peaks	ENCSR000DLG	ChIP-seq	EFO:0005352	GM20000	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF314ZWW, ENCFF583JRS	3202670	ENCODE Processing Pipeline	6b23ef5f49d5867875852f50eb8c9c2c		https://www.encodeproject.org/files/ENCFF128FLJ/@@download/ENCFF128FLJ.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF001UTR	bed narrowPeak	peaks	ENCSR000DML	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1201586	Vishwanath Iyer, UTA	44b518e1404ae5f3b5ab8c9aeafaca71		https://www.encodeproject.org/files/ENCFF001UTR/@@download/ENCFF001UTR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample, missing derived_from		
ENCFF317AIN	bed narrowPeak	peaks	ENCSR000EFN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HCFC1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF042SFT, ENCFF710NTS	4992350	ENCODE Processing Pipeline	9fe7d779b69b121ed7b469075d758d9e		https://www.encodeproject.org/files/ENCFF317AIN/@@download/ENCFF317AIN.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF701OSU	bed narrowPeak	peaks	ENCSR000BMH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF189XLI, ENCFF701KUD	2427491	ENCODE Processing Pipeline	ecadcaf2b4c40e427cd5818e778ecdad		https://www.encodeproject.org/files/ENCFF701OSU/@@download/ENCFF701OSU.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth, insufficient replicate concordance	
ENCFF304RUP	bed narrowPeak	peaks	ENCSR000EEA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				RFX5-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF212ITE	4869264	ENCODE Processing Pipeline	77f7c98cc30fb528074854e7ee61e981		https://www.encodeproject.org/files/ENCFF304RUP/@@download/ENCFF304RUP.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		missing control alignments
ENCFF808TOF	bed narrowPeak	peaks	ENCSR000DMJ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF525AMA, ENCFF602XLT	5897919	ENCODE Processing Pipeline	1bcf0fd9c15dd5d5bf653b17de022d59		https://www.encodeproject.org/files/ENCFF808TOF/@@download/ENCFF808TOF.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF664LLB	bed narrowPeak	peaks	ENCSR000BLL	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	ESR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF002HVX, ENCFF960JYT	4118885	ENCODE Processing Pipeline	214ffc454a6936c248f2e3f08437b859		https://www.encodeproject.org/files/ENCFF664LLB/@@download/ENCFF664LLB.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample	insufficient replicate concordance	
ENCFF319WWO	bed narrowPeak	peaks	ENCSR000EFP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF384-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF447POJ, ENCFF710NTS	4912704	ENCODE Processing Pipeline	3a6b86cbec7a587932391516e814c285		https://www.encodeproject.org/files/ENCFF319WWO/@@download/ENCFF319WWO.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF259PLY	bed narrowPeak	peaks	ENCSR000EXH	ChIP-seq	EFO:0005236	NT2/D1	cell line	Homo sapiens				SUZ12-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF205KMO, ENCFF928FQV	4762382	ENCODE Processing Pipeline	3def866451a27f2be8ce01fa5397caa0		https://www.encodeproject.org/files/ENCFF259PLY/@@download/ENCFF259PLY.bed.gz	hg19			released		biological replicates with identical biosample	insufficient read depth, insufficient read length	extremely low read depth
ENCFF333CPM	bed narrowPeak	peaks	ENCSR000DNN	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFYA-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF282HGE, ENCFF545DZO	51982	ENCODE Processing Pipeline	bc68e65a7b622a6d8503502a6f6859f5		https://www.encodeproject.org/files/ENCFF333CPM/@@download/ENCFF333CPM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF001UTY	bed narrowPeak	peaks	ENCSR000DND	ChIP-seq	UBERON:0001264	pancreas	tissue	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1163615	Vishwanath Iyer, UTA	3e9e9a4015fdbb07ab56b493fb6a354a		https://www.encodeproject.org/files/ENCFF001UTY/@@download/ENCFF001UTY.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking	missing derived_from		extremely low read depth, missing control alignments
ENCFF329BNL	bed narrowPeak	peaks	ENCSR000DND	ChIP-seq	UBERON:0001264	pancreas	tissue	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF781XST, ENCFF877UTE	1068829	ENCODE Processing Pipeline	c2c71e56feccb082ef8ac1070f3896ce		https://www.encodeproject.org/files/ENCFF329BNL/@@download/ENCFF329BNL.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking			extremely low read depth, missing control alignments
ENCFF213JJM	bed narrowPeak	peaks	ENCSR000DVA	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF138KCG, ENCFF501JGN	4259970	ENCODE Processing Pipeline	b164abad0ce02171120a2a3e0b3e4963		https://www.encodeproject.org/files/ENCFF213JJM/@@download/ENCFF213JJM.bed.gz	hg19			released	control low read depth, low read length, low read depth, inconsistent platforms			
ENCFF291WLP	bed narrowPeak	peaks	ENCSR000BKE	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ATF3-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF346RZT, ENCFF906RQV	4513802	ENCODE Processing Pipeline	8617fa61d30c6d6d4cd9fdb8a1ebc790		https://www.encodeproject.org/files/ENCFF291WLP/@@download/ENCFF291WLP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF482QCD	bed narrowPeak	peaks	ENCSR000BMT	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				NANOG-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF015LGN, ENCFF356DXM	3821978	ENCODE Processing Pipeline	8d71600478030b25b1fc13ff209c056d		https://www.encodeproject.org/files/ENCFF482QCD/@@download/ENCFF482QCD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms	biological replicates with identical biosample	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF338LQY	bed narrowPeak	peaks	ENCSR000BNS	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				FOSL1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF325QSH, ENCFF356DXM	2942610	ENCODE Processing Pipeline	d15ee169871f726922412f6da18c4d90		https://www.encodeproject.org/files/ENCFF338LQY/@@download/ENCFF338LQY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF310RCE	bed narrowPeak	peaks	ENCSR000DNI	ChIP-seq	UBERON:0002106	spleen	tissue	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF211IRJ, ENCFF737EOY	3764862	ENCODE Processing Pipeline	14542614543bec9e38353480665df435		https://www.encodeproject.org/files/ENCFF310RCE/@@download/ENCFF310RCE.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, moderate library complexity		control insufficient read depth, insufficient read depth	missing control alignments
ENCFF833VKG	bed narrowPeak	peaks	ENCSR000DNQ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZZZ3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF159LJP, ENCFF420MOQ	3538496	ENCODE Processing Pipeline	403f4af056e826f159402b5e36b35478		https://www.encodeproject.org/files/ENCFF833VKG/@@download/ENCFF833VKG.bed.gz	hg19			released	low read depth	biological replicates with identical biosample	control insufficient read depth, insufficient read length	
ENCFF599NQC	bed narrowPeak	peaks	ENCSR000BQK	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ATF2-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF221PEC, ENCFF508HCX	6265334	ENCODE Processing Pipeline	53716309948af71654d84b0b6d0e153d		https://www.encodeproject.org/files/ENCFF599NQC/@@download/ENCFF599NQC.bed.gz	hg19			released	low read length, inconsistent platforms	biological replicates with identical biosample		
ENCFF691LNH	bed narrowPeak	peaks	ENCSR000DPB	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	afimoxifene	1.0 μM	36.0 hour	STAT3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF397CHN, ENCFF502MJK	4470367	ENCODE Processing Pipeline	a072a308f03845167dc53186d0bc537a		https://www.encodeproject.org/files/ENCFF691LNH/@@download/ENCFF691LNH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF542DWV	bed narrowPeak	peaks	ENCSR000EDP	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ARID3A-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF107SKX, ENCFF298ULI	5401411	ENCODE Processing Pipeline	61b99754c0340358135249fe7d27b24b		https://www.encodeproject.org/files/ENCFF542DWV/@@download/ENCFF542DWV.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF537TSK	bed narrowPeak	peaks	ENCSR000DNA	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF020BND, ENCFF939MPS	5297898	ENCODE Processing Pipeline	6863296bfc38b4b4b59c9e04a0b38a0d		https://www.encodeproject.org/files/ENCFF537TSK/@@download/ENCFF537TSK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample		
ENCFF622NKF	bed narrowPeak	peaks	ENCSR000ECA	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				JUN-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF599MVB, ENCFF964HQE	4172041	ENCODE Processing Pipeline	42940b150816af7fe5619431c3f037bb		https://www.encodeproject.org/files/ENCFF622NKF/@@download/ENCFF622NKF.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF019JVF	bed narrowPeak	peaks	ENCSR000ECD	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				USF2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF599MVB, ENCFF971NYX	4469634	ENCODE Processing Pipeline	a5cb3c39a172f56aba04526695360eb3		https://www.encodeproject.org/files/ENCFF019JVF/@@download/ENCFF019JVF.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF001XTJ	bed narrowPeak	peaks	ENCSR000DWY	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF001HVT	722598	John Stamatoyannopoulos, UW	48a51fbc5d3c55523a17188b1c0125b3		https://www.encodeproject.org/files/ENCFF001XTJ/@@download/ENCFF001XTJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF002DDO	bed narrowPeak	optimal idr thresholded peaks	ENCSR000DWY	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF001HVT	711922	ENCODE Consortium Analysis Working Group	bc64fef4c49c1c68c531c03381fb685f		https://www.encodeproject.org/files/ENCFF002DDO/@@download/ENCFF002DDO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF181KEB	bed narrowPeak	peaks	ENCSR000DWY	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF225KSP, ENCFF621QAX	4849642	ENCODE Processing Pipeline	46f31a8b0d77d9c6158a8180e8cb041c		https://www.encodeproject.org/files/ENCFF181KEB/@@download/ENCFF181KEB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF967ZPP	bed narrowPeak	peaks	ENCSR000BHO	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF456OEK	5134541	ENCODE Processing Pipeline	bb2e02bddc20ea7fbc4c4947d3876f65		https://www.encodeproject.org/files/ENCFF967ZPP/@@download/ENCFF967ZPP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF974XPG	bed narrowPeak	peaks	ENCSR000DZF	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MAX-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF386FSS, ENCFF545DZO	4461832	ENCODE Processing Pipeline	e97387490d6752ecb997268acf9feaf9		https://www.encodeproject.org/files/ENCFF974XPG/@@download/ENCFF974XPG.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF025STW	bed narrowPeak	peaks	ENCSR000DPV	ChIP-seq	NTR:0000481	AG10803	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF060TFC, ENCFF450ZYV	4354501	ENCODE Processing Pipeline	da71cb4928d1a417b225bbeb64269fa9		https://www.encodeproject.org/files/ENCFF025STW/@@download/ENCFF025STW.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms	NTR biosample		
ENCFF864QJF	bed narrowPeak	peaks	ENCSR000EEH	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				NRF1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF180OPA	4206872	ENCODE Processing Pipeline	526e76f6fb517d1064424ac7cbfeb193		https://www.encodeproject.org/files/ENCFF864QJF/@@download/ENCFF864QJF.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF723VGS	bed narrowPeak	peaks	ENCSR000EUJ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				IKZF1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF361LSB, ENCFF420MOQ	4593904	ENCODE Processing Pipeline	8e1ed270dfa1f118707f73a3211c49e7		https://www.encodeproject.org/files/ENCFF723VGS/@@download/ENCFF723VGS.bed.gz	hg19			released	low read length, low read depth		control insufficient read depth	
ENCFF556HBG	bed narrowPeak	peaks	ENCSR000EWE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF274-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF232PMQ	3877075	ENCODE Processing Pipeline	7b1aef55c64986987534c8007ecdb9d7		https://www.encodeproject.org/files/ENCFF556HBG/@@download/ENCFF556HBG.bed.gz	hg19			released		biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF821INE	bed narrowPeak	peaks	ENCSR618ICR	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				RCOR1-human	DNA					False	2014-07-07	ENCODE				1							ENCFF215VRH, ENCFF863STQ	4382596	ENCODE Processing Pipeline	56971f40c755782b168da0a901ae5951		https://www.encodeproject.org/files/ENCFF821INE/@@download/ENCFF821INE.bed.gz	hg19			released	file validation error, low read length, low read depth, antibody characterized with exemption	mismatched file status		
ENCFF846NCI	bed narrowPeak	peaks	ENCSR000BLY	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens	all-trans-retinoic acid	6 μM	48 hour	RAD21-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF108EFL, ENCFF628QPJ	5162873	ENCODE Processing Pipeline	472a4291cdc2556eac9bb183aedca1eb		https://www.encodeproject.org/files/ENCFF846NCI/@@download/ENCFF846NCI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF246ZRW	bed narrowPeak	peaks	ENCSR000DZP	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SMC3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF415OZI, ENCFF545DZO	4420736	ENCODE Processing Pipeline	7b5ac62f88b531789ba07c59c81d94fb		https://www.encodeproject.org/files/ENCFF246ZRW/@@download/ENCFF246ZRW.bed.gz	hg19			released	low read length, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF352YTI	bed narrowPeak	peaks	ENCSR000BIW	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				GABPA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF133HNA, ENCFF356DXM	5466768	ENCODE Processing Pipeline	73685a6b59b4efffd6bf7ca56e436d7d		https://www.encodeproject.org/files/ENCFF352YTI/@@download/ENCFF352YTI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF344RYC	bed narrowPeak	peaks	ENCSR000AMF	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF391MCN, ENCFF727XHW	4828262	ENCODE Processing Pipeline	f462d7d540b5e27927b91e95e5f6803b		https://www.encodeproject.org/files/ENCFF344RYC/@@download/ENCFF344RYC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms			
ENCFF481EBP	bed narrowPeak	peaks	ENCSR000BMF	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens	all-trans-retinoic acid	6 μM	48 hour	USF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF108EFL, ENCFF755XST	4144183	ENCODE Processing Pipeline	6e0e715127161479dd410fa92e2928ea		https://www.encodeproject.org/files/ENCFF481EBP/@@download/ENCFF481EBP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF008AIJ	bed narrowPeak	peaks	ENCSR000BLZ	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens	all-trans-retinoic acid	6 μM	48 hour	YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF108EFL, ENCFF770MRP	5207050	ENCODE Processing Pipeline	4cda13b5e2648b6a4693dea2848d69f6		https://www.encodeproject.org/files/ENCFF008AIJ/@@download/ENCFF008AIJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF558HCQ	bed narrowPeak	peaks	ENCSR000BHT	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF044MEQ, ENCFF654DIS	3913119	ENCODE Processing Pipeline	62240f1162f1f1d0eb4f3b039ece7872		https://www.encodeproject.org/files/ENCFF558HCQ/@@download/ENCFF558HCQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF206BMO	bed narrowPeak	peaks	ENCSR000EHE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CEBPB-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF059XPJ, ENCFF710NTS	5056575	ENCODE Processing Pipeline	b4656163d89caf96eaf4861a3a13b877		https://www.encodeproject.org/files/ENCFF206BMO/@@download/ENCFF206BMO.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF220GLK	bed narrowPeak	peaks	ENCSR000EHC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GTF2F1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF698GEX, ENCFF710NTS	4742038	ENCODE Processing Pipeline	eed575974928ae29e2b021dd1f635577		https://www.encodeproject.org/files/ENCFF220GLK/@@download/ENCFF220GLK.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF829NXG	bed narrowPeak	peaks	ENCSR000EZX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		6.0 hour	JUN-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF573AFD, ENCFF998GMZ	2294461	ENCODE Processing Pipeline	3fe26a31a072923e0bb45a0d9b66931c		https://www.encodeproject.org/files/ENCFF829NXG/@@download/ENCFF829NXG.bed.gz	hg19			released	control low read depth	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF159IRT	bed narrowPeak	peaks	ENCSR000EGN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF710NTS, ENCFF904GCT	4828402	ENCODE Processing Pipeline	1aadafa6f0c66521cb34dd178f33868b		https://www.encodeproject.org/files/ENCFF159IRT/@@download/ENCFF159IRT.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF792VDM	bed narrowPeak	peaks	ENCSR572DUJ	ChIP-seq	UBERON:0001150	body of pancreas	tissue	Homo sapiens				CTCF-human	DNA					False	2017-08-28	ENCODE				1							ENCFF723SME, ENCFF959YHF	5873759	ENCODE Processing Pipeline	66c3988d5eb739b8b18b92b3b1f66dfd		https://www.encodeproject.org/files/ENCFF792VDM/@@download/ENCFF792VDM.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO		missing nih_institutional_certification
ENCFF636JXY	bed narrowPeak	peaks	ENCSR331HPA	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				GABPA-human	DNA					False	2014-06-30	ENCODE				1							ENCFF249FIH, ENCFF513ZBH, ENCFF777FIV	4461664	ENCODE Processing Pipeline	0c3f577bd1e330c847c578dcd8a09790		https://www.encodeproject.org/files/ENCFF636JXY/@@download/ENCFF636JXY.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth, inconsistent platforms, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF256FUR	bed narrowPeak	peaks	ENCSR000BMI	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SRF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF941CFE, ENCFF963CVB	4078871	ENCODE Processing Pipeline	81e563b52b45fdedd7c92dcf39ed7fc2		https://www.encodeproject.org/files/ENCFF256FUR/@@download/ENCFF256FUR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF283VJO	bed narrowPeak	peaks	ENCSR000BJA	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				EGR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF998VOK	4029175	ENCODE Processing Pipeline	5fc856fc251562390858d357d9cc087c		https://www.encodeproject.org/files/ENCFF283VJO/@@download/ENCFF283VJO.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample		
ENCFF168LBA	bed narrowPeak	peaks	ENCSR945NFL	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				USF2-human	DNA					False	2017-06-15	ENCODE				1							ENCFF459ELU, ENCFF650GFB	155206	ENCODE Processing Pipeline	a1853dc6335971ecb9914bc9c75b3622		https://www.encodeproject.org/files/ENCFF168LBA/@@download/ENCFF168LBA.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, antibody characterized with exemption			
ENCFF257FNC	bed narrowPeak	peaks	ENCSR000EGH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		30.0 minute	JUN-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF650MOB, ENCFF943CTI	3403440	ENCODE Processing Pipeline	c7c78f86b4257bf45fb74f8d62b94c06		https://www.encodeproject.org/files/ENCFF257FNC/@@download/ENCFF257FNC.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF001USF	bed narrowPeak	peaks	ENCSR000DKR	ChIP-seq	EFO:0005335	GM10266	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1318235	Vishwanath Iyer, UTA	a3a7daa60e6440de140376f4e7603835		https://www.encodeproject.org/files/ENCFF001USF/@@download/ENCFF001USF.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	missing derived_from, biological replicates with identical biosample	control insufficient read depth	missing control alignments
ENCFF327KKL	bed narrowPeak	peaks	ENCSR000DKR	ChIP-seq	EFO:0005335	GM10266	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF297IQJ, ENCFF719PSV	3660347	ENCODE Processing Pipeline	37d1306101f90abfb34886cf38a6fe60		https://www.encodeproject.org/files/ENCFF327KKL/@@download/ENCFF327KKL.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	control insufficient read depth	missing control alignments
ENCFF485KEP	bed narrowPeak	peaks	ENCSR000DOS	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	ethanol	0.01 percent	36.0 hour	MYC-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF339PKZ, ENCFF425RUE	5268373	ENCODE Processing Pipeline	6a09194a187e1463c470842e3a88a254		https://www.encodeproject.org/files/ENCFF485KEP/@@download/ENCFF485KEP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization	biological replicates with identical biosample		
ENCFF483ENA	bed narrowPeak	peaks	ENCSR720USO	ChIP-seq	UBERON:0002367	prostate gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-29	ENCODE				1							ENCFF225TLR, ENCFF942GWO	6460385	ENCODE Processing Pipeline	49e4b91ad490e293a8051bd802f597fc		https://www.encodeproject.org/files/ENCFF483ENA/@@download/ENCFF483ENA.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF686GYI	bed narrowPeak	peaks	ENCSR000ECB	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				TBP-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF599MVB, ENCFF937OBB	5363076	ENCODE Processing Pipeline	61a0cea731b6e63dd21f5e200465a16f		https://www.encodeproject.org/files/ENCFF686GYI/@@download/ENCFF686GYI.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF378JGJ	bed narrowPeak	peaks	ENCSR000EFY	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ARID3A-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF710NTS, ENCFF992ORW	5188832	ENCODE Processing Pipeline	98ce87791b953d6bb2d7f3af8c7c40b1		https://www.encodeproject.org/files/ENCFF378JGJ/@@download/ENCFF378JGJ.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF641GOK	bed narrowPeak	peaks	ENCSR000DXW	ChIP-seq	EFO:0005715	WERI-Rb-1	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF171VRI, ENCFF627YEZ	3380690	ENCODE Processing Pipeline	18c82b43513367dfcefb9a9627bf4994		https://www.encodeproject.org/files/ENCFF641GOK/@@download/ENCFF641GOK.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms		insufficient read depth	
ENCFF447CBR	bed narrowPeak	peaks	ENCSR000BIT	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				TCF12-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF944UGX	4256875	ENCODE Processing Pipeline	43a6bd90f2e0ce6d0488f8de3e1fda68		https://www.encodeproject.org/files/ENCFF447CBR/@@download/ENCFF447CBR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF536OEM	bed narrowPeak	peaks	ENCSR027HML	ChIP-seq	EFO:0006711	OCI-LY7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2014-07-11	ENCODE				1							ENCFF004XDI, ENCFF602DKP, ENCFF654OKM	6456581	ENCODE Processing Pipeline	67ca50ace187082751a8ac217c988297		https://www.encodeproject.org/files/ENCFF536OEM/@@download/ENCFF536OEM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity, mixed read lengths, antibody characterized with exemption	NTR biosample		
ENCFF354QYP	bed narrowPeak	peaks	ENCSR000EBX	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				BRCA1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF599MVB, ENCFF932MOL	4293581	ENCODE Processing Pipeline	a70946a63d3206418cf9a01c98969c2b		https://www.encodeproject.org/files/ENCFF354QYP/@@download/ENCFF354QYP.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF572VXK	bed narrowPeak	peaks	ENCSR115SMW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				PKNOX1-human	DNA					False	2016-06-14	ENCODE				1							ENCFF394VWK, ENCFF581ZJL	7033899	ENCODE Processing Pipeline	c0d6060bab366f6158b69de0f02afd5e		https://www.encodeproject.org/files/ENCFF572VXK/@@download/ENCFF572VXK.bed.gz	hg19			released				
ENCFF493VQC	bed narrowPeak	peaks	ENCSR000DQI	ChIP-seq	EFO:0002779	BJ	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF217JMI, ENCFF706WFS	3972671	ENCODE Processing Pipeline	334898a666f4ce14ce56d36b98258185		https://www.encodeproject.org/files/ENCFF493VQC/@@download/ENCFF493VQC.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth		insufficient read depth	
ENCFF591DYQ	bed narrowPeak	peaks	ENCSR000BJZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BCLAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF276KQJ, ENCFF837IOW	5992434	ENCODE Processing Pipeline	29b8364052c75dd971eea56750045f7b		https://www.encodeproject.org/files/ENCFF591DYQ/@@download/ENCFF591DYQ.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF343NOG	bed narrowPeak	peaks	ENCSR261VAS	ChIP-seq	CL:0000192	smooth muscle cell	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA					False	2017-12-03	ENCODE				1							ENCFF346LNS, ENCFF696UZI, ENCFF989OXT	3990576	ENCODE Processing Pipeline	9b0c6551da559fef334e85b3300d89b5		https://www.encodeproject.org/files/ENCFF343NOG/@@download/ENCFF343NOG.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF107CCL	bed narrowPeak	peaks	ENCSR000EGD	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BACH1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF710NTS, ENCFF751ATX	4278578	ENCODE Processing Pipeline	b256805c9fc102b8db586279a1c74419		https://www.encodeproject.org/files/ENCFF107CCL/@@download/ENCFF107CCL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF005RNW	bed narrowPeak	peaks	ENCSR000DPY	ChIP-seq	CL:0002547	fibroblast of the aortic adventitia	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF772BCU, ENCFF972ATQ	2238862	ENCODE Processing Pipeline	5b3497b5bd24d11f6712be57a28178c5		https://www.encodeproject.org/files/ENCFF005RNW/@@download/ENCFF005RNW.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms		insufficient read depth	
ENCFF616DKI	bed narrowPeak	peaks	ENCSR000BKC	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				ATF3-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF266SYC, ENCFF356DXM	3722292	ENCODE Processing Pipeline	b23cad7158e5e40098e9c7d27a184636		https://www.encodeproject.org/files/ENCFF616DKI/@@download/ENCFF616DKI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF958APN	bed narrowPeak	peaks	ENCSR000EFF	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				MAZ-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF191DFR, ENCFF601AUG, ENCFF865LAP	4594619	ENCODE Processing Pipeline	fb453334f324d7b5fbd73fa3e3285a75		https://www.encodeproject.org/files/ENCFF958APN/@@download/ENCFF958APN.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF318RHH	bed narrowPeak	peaks	ENCSR000DZV	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				STAT3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF416FSY, ENCFF545DZO	4125263	ENCODE Processing Pipeline	5e9262a0cb34be36eda68e27d952dc6e		https://www.encodeproject.org/files/ENCFF318RHH/@@download/ENCFF318RHH.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF084VMV	bed narrowPeak	peaks	ENCSR000ALA	ChIP-seq	CL:0002618	endothelial cell of umbilical vein	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF039WIG, ENCFF735DEG	3946334	ENCODE Processing Pipeline	e9baaf031d262ea751d5c643caaea098		https://www.encodeproject.org/files/ENCFF084VMV/@@download/ENCFF084VMV.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, moderate library complexity		insufficient read depth	
ENCFF737TLI	bed narrowPeak	peaks	ENCSR000DRU	ChIP-seq	EFO:0001162	GM12875	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF182XEA, ENCFF913KQZ	3247552	ENCODE Processing Pipeline	e700f729e1a480aacaccfa7ace1dd918		https://www.encodeproject.org/files/ENCFF737TLI/@@download/ENCFF737TLI.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth	
ENCFF974PTU	bed narrowPeak	peaks	ENCSR000BQS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF549FFR, ENCFF812HUT, ENCFF958RTR	4725395	ENCODE Processing Pipeline	1e04b973d8c86d59b1cbb44967b2f31a		https://www.encodeproject.org/files/ENCFF974PTU/@@download/ENCFF974PTU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF039PUW	bed narrowPeak	peaks	ENCSR027FSZ	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF080TZU, ENCFF622IZB	6776523	ENCODE Processing Pipeline	7f3d79db32c87814cfd1f8f89aece011		https://www.encodeproject.org/files/ENCFF039PUW/@@download/ENCFF039PUW.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF001XST	bed narrowPeak	peaks	ENCSR000DWE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF001HTC	862203	John Stamatoyannopoulos, UW	e8332ac71efe7497fe88b557ce628c9c		https://www.encodeproject.org/files/ENCFF001XST/@@download/ENCFF001XST.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms		insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF304FFB	bed narrowPeak	peaks	ENCSR000DZB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ELK1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF164TSL, ENCFF545DZO	4310528	ENCODE Processing Pipeline	702bb44e799b0f61b777af58d1f4cf64		https://www.encodeproject.org/files/ENCFF304FFB/@@download/ENCFF304FFB.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	duplicate lane review, biological replicates with identical biosample		
ENCFF767MET	bed narrowPeak	peaks	ENCSR000BNI	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXA2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF771TCH	4392167	ENCODE Processing Pipeline	395f72d1643b1534682328210707a4da		https://www.encodeproject.org/files/ENCFF767MET/@@download/ENCFF767MET.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample	insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking	
ENCFF713KSL	bed narrowPeak	peaks	ENCSR000BKS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF278YTL, ENCFF750MIM	2290084	ENCODE Processing Pipeline	af1c4a7aa3b4d0dfc348d3685a0b7c8b		https://www.encodeproject.org/files/ENCFF713KSL/@@download/ENCFF713KSL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, severe bottlenecking	extremely low read depth, missing control alignments
ENCFF474KGT	bed narrowPeak	peaks	ENCSR000AOA	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF385UZW, ENCFF451SVK, ENCFF474UIC	5658490	ENCODE Processing Pipeline	ce82950f0f188ee5cb89e908c11c76ea		https://www.encodeproject.org/files/ENCFF474KGT/@@download/ENCFF474KGT.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity			
ENCFF270RLY	bed narrowPeak	peaks	ENCSR000DZD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				EP300-human	DNA					False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF258NYC, ENCFF545DZO	4424277	ENCODE Processing Pipeline	bc7a9f5c798d838ca235739f1184e385		https://www.encodeproject.org/files/ENCFF270RLY/@@download/ENCFF270RLY.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent platforms, inconsistent target of control experiment			
ENCFF191NQS	bed narrowPeak	peaks	ENCSR000DYY	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				E2F4-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF597JXK	3873486	ENCODE Processing Pipeline	0554fc80e5ff413de68ad8b01bde8c66		https://www.encodeproject.org/files/ENCFF191NQS/@@download/ENCFF191NQS.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF864PVD	bed narrowPeak	peaks	ENCSR000BNP	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF180NKF, ENCFF958RTR, ENCFF963CVB	5535261	ENCODE Processing Pipeline	90807ae650d4013601096acbb16706a4		https://www.encodeproject.org/files/ENCFF864PVD/@@download/ENCFF864PVD.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF001XRK	bed narrowPeak	peaks	ENCSR000DUP	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF001HOV	514150	John Stamatoyannopoulos, UW	f951ec040d109e841c247acfdf835241		https://www.encodeproject.org/files/ENCFF001XRK/@@download/ENCFF001XRK.bed.gz	hg19			released	control low read depth, low read length, inconsistent platforms		insufficient read depth	
ENCFF002DDA	bed narrowPeak	optimal idr thresholded peaks	ENCSR000DUP	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF001HOV	375499	ENCODE Consortium Analysis Working Group	2bc274678f574d811003c25e47864252		https://www.encodeproject.org/files/ENCFF002DDA/@@download/ENCFF002DDA.bed.gz	hg19			released	control low read depth, low read length, inconsistent platforms		insufficient read depth	
ENCFF600CVY	bed narrowPeak	peaks	ENCSR000DUP	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF340ENP, ENCFF945XQT	2203007	ENCODE Processing Pipeline	71b6784ff98db8e9717b8eaf7cd71d5e		https://www.encodeproject.org/files/ENCFF600CVY/@@download/ENCFF600CVY.bed.gz	hg19			released	control low read depth, low read length, inconsistent platforms		insufficient read depth	
ENCFF263ZIY	bed narrowPeak	peaks	ENCSR000DUB	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF111FGZ, ENCFF122HJS	1727029	ENCODE Processing Pipeline	9907af9e5ad7594d5220fd9863fde372		https://www.encodeproject.org/files/ENCFF263ZIY/@@download/ENCFF263ZIY.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth	extremely low read depth, missing control alignments
ENCFF875YOA	bed narrowPeak	peaks	ENCSR000BMZ	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ELF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF081HCC, ENCFF346RZT	4956830	ENCODE Processing Pipeline	ac0997f671ddfa3fc9478e5f5a0ff674		https://www.encodeproject.org/files/ENCFF875YOA/@@download/ENCFF875YOA.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF357NBU	bed narrowPeak	peaks	ENCSR000EGS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		30.0 minute	MYC-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF287WTN, ENCFF309ANN	4223795	ENCODE Processing Pipeline	69a2a9af103dd227176648e42edaee29		https://www.encodeproject.org/files/ENCFF357NBU/@@download/ENCFF357NBU.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample	control insufficient read depth	
ENCFF858HDY	bed narrowPeak	peaks	ENCSR000DRB	ChIP-seq	EFO:0005337	GM12864	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF418PTV, ENCFF437XQZ	2866804	ENCODE Processing Pipeline	1805a6e56d8ac8d00e55976f1a24100c		https://www.encodeproject.org/files/ENCFF858HDY/@@download/ENCFF858HDY.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth	missing raw data in replicate	insufficient read depth	missing control alignments
ENCFF555GZI	bed narrowPeak	peaks	ENCSR000DKZ	ChIP-seq	EFO:0005345	GM13976	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF248LUV, ENCFF841TPD	3319531	ENCODE Processing Pipeline	f88c303dbbe59fba376fdc23b7668774		https://www.encodeproject.org/files/ENCFF555GZI/@@download/ENCFF555GZI.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance	biological replicates with identical biosample	insufficient read depth	control extremely low read depth, missing control alignments
ENCFF981IPY	bed narrowPeak	peaks	ENCSR000DZG	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				EP300-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF331KEV, ENCFF420MOQ	4488501	ENCODE Processing Pipeline	068912a3f4e79bb4e1af6fe5b56c1127		https://www.encodeproject.org/files/ENCFF981IPY/@@download/ENCFF981IPY.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample	control insufficient read depth, insufficient replicate concordance	
ENCFF565QFG	bed narrowPeak	peaks	ENCSR000BRA	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	CREB1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF692IRB, ENCFF891DUU	3586932	ENCODE Processing Pipeline	41358c3f0008d638324617e527486188		https://www.encodeproject.org/files/ENCFF565QFG/@@download/ENCFF565QFG.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity			
ENCFF578MYY	bed narrowPeak	peaks	ENCSR000EEE	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				CEBPB-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF867DTO	4975123	ENCODE Processing Pipeline	dd00434db40aa109c103280531fc37c1		https://www.encodeproject.org/files/ENCFF578MYY/@@download/ENCFF578MYY.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF508ZEB	bed narrowPeak	peaks	ENCSR000EDV	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				EP300-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF608WKP	5092416	ENCODE Processing Pipeline	5cf274f882dd9c0850301639ad1440b3		https://www.encodeproject.org/files/ENCFF508ZEB/@@download/ENCFF508ZEB.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF355REI	bed narrowPeak	peaks	ENCSR000BQD	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	bisphenol A	100.0 nM	30.0 minute	ESR1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF002HVX, ENCFF334WOO, ENCFF698QEQ	4007596	ENCODE Processing Pipeline	64f27625caa57837f4b95f7cc920d940		https://www.encodeproject.org/files/ENCFF355REI/@@download/ENCFF355REI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF667IBC	bed narrowPeak	peaks	ENCSR233FAG	ChIP-seq	EFO:0001184	HEK293T	cell line	Homo sapiens				PKNOX1-human	DNA					False	2016-11-17	ENCODE				1							ENCFF040GAR, ENCFF255FOB, ENCFF760DHW	6941686	ENCODE Processing Pipeline	6604b384938ac22340c895fcb8df7079		https://www.encodeproject.org/files/ENCFF667IBC/@@download/ENCFF667IBC.bed.gz	hg19			released				
ENCFF711VHK	bed narrowPeak	peaks	ENCSR000DZI	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MXI1-human	DNA					False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF387QOE, ENCFF545DZO	4587819	ENCODE Processing Pipeline	c85d0aa485fd67cd66b762d7c70136fa		https://www.encodeproject.org/files/ENCFF711VHK/@@download/ENCFF711VHK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, inconsistent target of control experiment			
ENCFF019FNI	bed narrowPeak	peaks	ENCSR000BRN	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFIC-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF508HCX, ENCFF930KIJ	6488664	ENCODE Processing Pipeline	f4ce1c0a9218c31ee5091bc8bf3803fc		https://www.encodeproject.org/files/ENCFF019FNI/@@download/ENCFF019FNI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	biological replicates with identical biosample		
ENCFF610GLP	bed narrowPeak	peaks	ENCSR000DUX	ChIP-seq	CL:0002557	fibroblast of pulmonary artery	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF327YGC, ENCFF470KVA	4675468	ENCODE Processing Pipeline	da53e8f4957c778f8467e4f97692440a		https://www.encodeproject.org/files/ENCFF610GLP/@@download/ENCFF610GLP.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms			missing control alignments
ENCFF806MDV	bed narrowPeak	peaks	ENCSR000BJO	ChIP-seq	EFO:0002713	Panc1	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF134TNE, ENCFF248GJG, ENCFF990BKO	5086558	ENCODE Processing Pipeline	ab4d30bdecb62c12c23fa55a734700c8		https://www.encodeproject.org/files/ENCFF806MDV/@@download/ENCFF806MDV.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF380BKK	bed narrowPeak	peaks	ENCSR000BMC	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				HDAC2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF266XYT, ENCFF346RZT	5697661	ENCODE Processing Pipeline	9a884461cd8092870ab313c7e55ddc32		https://www.encodeproject.org/files/ENCFF380BKK/@@download/ENCFF380BKK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		
ENCFF536YVV	bed narrowPeak	peaks	ENCSR000EGO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				RFX5-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF710NTS, ENCFF868YCY	4405762	ENCODE Processing Pipeline	2353777e3b8f76d67d0bf9af71a94f3d		https://www.encodeproject.org/files/ENCFF536YVV/@@download/ENCFF536YVV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF001USE	bed narrowPeak	peaks	ENCSR000DKP	ChIP-seq	EFO:0005334	GM10248	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1381266	Vishwanath Iyer, UTA	285966ae09ce968994fae18e23a07669		https://www.encodeproject.org/files/ENCFF001USE/@@download/ENCFF001USE.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	missing derived_from, biological replicates with identical biosample	insufficient read depth	control extremely low read depth, missing control alignments
ENCFF251JON	bed narrowPeak	peaks	ENCSR000DKP	ChIP-seq	EFO:0005334	GM10248	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF384QVL, ENCFF531PKS	3572878	ENCODE Processing Pipeline	6936922484264644e8d91f08d0c8ad1d		https://www.encodeproject.org/files/ENCFF251JON/@@download/ENCFF251JON.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	control extremely low read depth, missing control alignments
ENCFF281ONW	bed narrowPeak	peaks	ENCSR000EWM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GATA1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF461UBM	1358195	ENCODE Processing Pipeline	99965bf4d8aaec0d25e61565757d4476		https://www.encodeproject.org/files/ENCFF281ONW/@@download/ENCFF281ONW.bed.gz	hg19			released	borderline replicate concordance	biological replicates with identical biosample	insufficient read depth, insufficient read length	extremely low read depth
ENCFF224GZD	bed narrowPeak	peaks	ENCSR000EZD	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF406ZWO, ENCFF814FCQ	1535754	ENCODE Processing Pipeline	a7c295748685ddbdf57c4aca4091794c		https://www.encodeproject.org/files/ENCFF224GZD/@@download/ENCFF224GZD.bed.gz	hg19			released	control low read depth, borderline replicate concordance, inconsistent platforms	biological replicates with identical biosample	insufficient read depth, insufficient read length	extremely low read depth
ENCFF731JIX	bed narrowPeak	peaks	ENCSR000BPT	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	ELF1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF860JJU, ENCFF864UEQ	5607155	ENCODE Processing Pipeline	a6371774fda1b790b6b7e613e84b6a18		https://www.encodeproject.org/files/ENCFF731JIX/@@download/ENCFF731JIX.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF976NKK	bed narrowPeak	peaks	ENCSR000BNO	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	CTCF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF266NHV, ENCFF960JYT	4626514	ENCODE Processing Pipeline	fab28693e6e55f38de5c28abf82d891e		https://www.encodeproject.org/files/ENCFF976NKK/@@download/ENCFF976NKK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF830ZWP	bed narrowPeak	peaks	ENCSR000EIB	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF089TJI, ENCFF167WNW, ENCFF666ZPP	5161145	ENCODE Processing Pipeline	db81a0b6127cddbbd67d7fc367ccb2cf		https://www.encodeproject.org/files/ENCFF830ZWP/@@download/ENCFF830ZWP.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF595QHF	bed narrowPeak	peaks	ENCSR000EGM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF487UYG, ENCFF710NTS	4688230	ENCODE Processing Pipeline	be40a763bd65492b830c3cf768a541ad		https://www.encodeproject.org/files/ENCFF595QHF/@@download/ENCFF595QHF.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF092FFG	bed narrowPeak	peaks	ENCSR000EEB	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF126OVJ	5716680	ENCODE Processing Pipeline	8d889c076bae1bef1cc6daa795e883d4		https://www.encodeproject.org/files/ENCFF092FFG/@@download/ENCFF092FFG.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF246GJS	bed narrowPeak	peaks	ENCSR525YFS	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZBTB40-human	DNA					False	2016-08-01	ENCODE				1							ENCFF449NNE, ENCFF560SBN	6036616	ENCODE Processing Pipeline	32f13d6823312b0678e67970d377f590		https://www.encodeproject.org/files/ENCFF246GJS/@@download/ENCFF246GJS.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF861NLK	bed narrowPeak	peaks	ENCSR000DTF	ChIP-seq	CL:0002548	cardiac fibroblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF419FEJ, ENCFF661ZEZ	4247467	ENCODE Processing Pipeline	f2002e90a4db1e594fac6262f148c6e4		https://www.encodeproject.org/files/ENCFF861NLK/@@download/ENCFF861NLK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms			
ENCFF051FKL	bed narrowPeak	peaks	ENCSR000EWN	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZNF263-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF362BFL	3582959	ENCODE Processing Pipeline	d37e6204205236600c1cd7fc27b279c0		https://www.encodeproject.org/files/ENCFF051FKL/@@download/ENCFF051FKL.bed.gz	hg19			released		biological replicates with identical biosample	insufficient read length	extremely low read depth
ENCFF222CSK	bed narrowPeak	peaks	ENCSR000EVW	ChIP-seq	CL:0002618	endothelial cell of umbilical vein	primary cell	Homo sapiens				GATA2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF269ZZO, ENCFF379GUA	5545148	ENCODE Processing Pipeline	9e77f17dc7009f11ffe7875a5e005196		https://www.encodeproject.org/files/ENCFF222CSK/@@download/ENCFF222CSK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF998WPB	bed narrowPeak	peaks	ENCSR000BPU	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	ETS1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF455WGF, ENCFF864UEQ	6000076	ENCODE Processing Pipeline	b8d07bfaec10e7802d33075a25fbd008		https://www.encodeproject.org/files/ENCFF998WPB/@@download/ENCFF998WPB.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample		
ENCFF142SVH	bed narrowPeak	peaks	ENCSR000AUE	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	100 nM	1 hour	CTCF-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF289PMY, ENCFF631JUR, ENCFF698OND	5855036	ENCODE Processing Pipeline	8541b4c839db43ae7c053eefceb4139e		https://www.encodeproject.org/files/ENCFF142SVH/@@download/ENCFF142SVH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF194IYQ	bed narrowPeak	peaks	ENCSR000BHJ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				PAX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF032WUR, ENCFF228QWW, ENCFF958RTR	3798265	ENCODE Processing Pipeline	fc8a1fe849827f33e155bfdfc02a37f0		https://www.encodeproject.org/files/ENCFF194IYQ/@@download/ENCFF194IYQ.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF701HCP	bed narrowPeak	peaks	ENCSR000BJW	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				RXRA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF615AON	3777708	ENCODE Processing Pipeline	a5bbc5dcb6e31d9607641f443d4d7084		https://www.encodeproject.org/files/ENCFF701HCP/@@download/ENCFF701HCP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF710XFQ	bed narrowPeak	peaks	ENCSR000DYI	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				CEBPB-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF296BML, ENCFF512WDI, ENCFF940YYO	5309170	ENCODE Processing Pipeline	54d39b84761cf7691a278da6724e3ac0		https://www.encodeproject.org/files/ENCFF710XFQ/@@download/ENCFF710XFQ.bed.gz	hg19			released	low read length, low read depth, inconsistent platforms, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF860WKG	bed narrowPeak	peaks	ENCSR000EHY	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				RFX5-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF089TJI, ENCFF588TSB, ENCFF666ZPP	4816074	ENCODE Processing Pipeline	7cc8a27661ac10afd22f18914a6e9f71		https://www.encodeproject.org/files/ENCFF860WKG/@@download/ENCFF860WKG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF088SYH	bed narrowPeak	peaks	ENCSR972LYL	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF158YVQ, ENCFF664ITJ	6629904	ENCODE Processing Pipeline	6561cc38e9ca79c1de0d331b5f8fce18		https://www.encodeproject.org/files/ENCFF088SYH/@@download/ENCFF088SYH.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF342EJU	bed narrowPeak	peaks	ENCSR000EWH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR2C2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF396QHD	1846008	ENCODE Processing Pipeline	2204adb7de4c87af2ca746cd3217546a		https://www.encodeproject.org/files/ENCFF342EJU/@@download/ENCFF342EJU.bed.gz	hg19			released		biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF137BQM	bed narrowPeak	peaks	ENCSR521IID	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				MAX-human	DNA					False	2016-06-30	ENCODE				1							ENCFF549RWC, ENCFF871NUZ	6011079	ENCODE Processing Pipeline	b9092bedf104651ae59cc5e1c6395e59		https://www.encodeproject.org/files/ENCFF137BQM/@@download/ENCFF137BQM.bed.gz	hg19			released	antibody characterized with exemption	biological replicates with identical biosample		
ENCFF174YEU	bed narrowPeak	peaks	ENCSR000DQW	ChIP-seq	EFO:0002783	GM06990	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF131LGY, ENCFF451AFR	3018489	ENCODE Processing Pipeline	050555ae2686fc4c4dc35428f1149d66		https://www.encodeproject.org/files/ENCFF174YEU/@@download/ENCFF174YEU.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms		insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF396UAX	bed narrowPeak	peaks	ENCSR000BQQ	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	TCF12-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF681PEE, ENCFF864UEQ	5996856	ENCODE Processing Pipeline	2abacd5b770dec797ae8c3f10802b033		https://www.encodeproject.org/files/ENCFF396UAX/@@download/ENCFF396UAX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		
ENCFF001UTH	bed narrowPeak	peaks	ENCSR000DME	ChIP-seq	EFO:0005726	LNCaP clone FGC	cell line	Homo sapiens	17β-hydroxy-17-methylestra-4,9,11-trien-3-one	1 nM	12 hour	CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1	1							1265974	Vishwanath Iyer, UTA	f8f3b52f1d1a700e914ecf1756f6cea7		https://www.encodeproject.org/files/ENCFF001UTH/@@download/ENCFF001UTH.bed.gz	hg19			released		biological replicates with identical biosample, missing derived_from		
ENCFF502LWJ	bed narrowPeak	peaks	ENCSR085IXF	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				SP1-human	DNA					False	2018-02-08	ENCODE				1							ENCFF180TKR, ENCFF200LFK, ENCFF321UJV	6332253	ENCODE Processing Pipeline	1b4696ff790ef79b25a9eb0f2485d387		https://www.encodeproject.org/files/ENCFF502LWJ/@@download/ENCFF502LWJ.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample, experiment not submitted to GEO		
ENCFF570JVX	bed narrowPeak	peaks	ENCSR000EGQ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFYB-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ	1050923	ENCODE Processing Pipeline	ca2172ab129944366ef6e528a0d83bcf		https://www.encodeproject.org/files/ENCFF570JVX/@@download/ENCFF570JVX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read length	extremely low read depth
ENCFF325IOO	bed narrowPeak	peaks	ENCSR265PFQ	ChIP-seq	UBERON:0001150	body of pancreas	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-29	ENCODE				1							ENCFF435OCU, ENCFF508CNG	6480989	ENCODE Processing Pipeline	d1c0ba9640cf006ade1f4b49893ae397		https://www.encodeproject.org/files/ENCFF325IOO/@@download/ENCFF325IOO.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF189KUR	bed narrowPeak	peaks	ENCSR480LIS	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				ATF3-human	DNA					False	2016-03-31	ENCODE				1							ENCFF321UJV, ENCFF978VQG	5470428	ENCODE Processing Pipeline	e9d497a192b45edf404a0686e4045169		https://www.encodeproject.org/files/ENCFF189KUR/@@download/ENCFF189KUR.bed.gz	hg19			released	low read depth, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF789TQP	bed narrowPeak	peaks	ENCSR000DZO	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NRF1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF229PFV, ENCFF545DZO	903479	ENCODE Processing Pipeline	ac6d0a60a78a1be58526956c957270ac		https://www.encodeproject.org/files/ENCFF789TQP/@@download/ENCFF789TQP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF647DHT	bed narrowPeak	peaks	ENCSR000BTK	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				GABPA-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF839FNS, ENCFF880DIZ	5076666	ENCODE Processing Pipeline	1bc765088eadfbe7b154cd6d59757a55		https://www.encodeproject.org/files/ENCFF647DHT/@@download/ENCFF647DHT.bed.gz	hg19			released	low read depth	biological replicates with identical biosample		
ENCFF407JBN	bed narrowPeak	peaks	ENCSR016BMM	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				TAF1-human	DNA					False	2016-06-30	ENCODE				1							ENCFF359TIO, ENCFF509HEN	5965134	ENCODE Processing Pipeline	27452cd06f2a29eb47a384396a5eea1e		https://www.encodeproject.org/files/ENCFF407JBN/@@download/ENCFF407JBN.bed.gz	hg19			released	mild to moderate bottlenecking, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF211BEL	bed narrowPeak	peaks	ENCSR000EBP	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				GTF2F1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF211HZM, ENCFF599MVB	4970402	ENCODE Processing Pipeline	e2bb22eb97f2e1a74fb4cdb2b7e3c270		https://www.encodeproject.org/files/ENCFF211BEL/@@download/ENCFF211BEL.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF046PLS	bed narrowPeak	peaks	ENCSR000BHA	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BCL11A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF197DUH, ENCFF958RTR	4572072	ENCODE Processing Pipeline	a49f776dcecfc81d1074693be4a16e5e		https://www.encodeproject.org/files/ENCFF046PLS/@@download/ENCFF046PLS.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF464UMR	bed narrowPeak	peaks	ENCSR000BQH	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	BCL3-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF788NMA, ENCFF864UEQ	6366838	ENCODE Processing Pipeline	e2926302ad89a29921a7102fffba1dbb		https://www.encodeproject.org/files/ENCFF464UMR/@@download/ENCFF464UMR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF988DJT	bed narrowPeak	peaks	ENCSR000DTO	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF052OHY, ENCFF289VTR	4046478	ENCODE Processing Pipeline	841040790c05ee2cf51325df54a9716d		https://www.encodeproject.org/files/ENCFF988DJT/@@download/ENCFF988DJT.bed.gz	hg19			released	control low read depth, low read length, low read depth			
ENCFF985GJY	bed narrowPeak	peaks	ENCSR000BHS	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				GABPA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF044MEQ, ENCFF820GCU	3898821	ENCODE Processing Pipeline	160a39955ee9d582777a912c33db6628		https://www.encodeproject.org/files/ENCFF985GJY/@@download/ENCFF985GJY.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF316GUJ	bed narrowPeak	peaks	ENCSR000BGM	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				USF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF472OOV, ENCFF523DNB	4140152	ENCODE Processing Pipeline	61ce2d1eaafd5cd80daec838734efe7b		https://www.encodeproject.org/files/ENCFF316GUJ/@@download/ENCFF316GUJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		
ENCFF555YAB	bed narrowPeak	peaks	ENCSR080XEY	ChIP-seq	UBERON:0002107	liver	tissue	Homo sapiens				FOXA2-human	DNA					False	2016-06-30	ENCODE				1							ENCFF359TIO, ENCFF460ORU	4994489	ENCODE Processing Pipeline	c37fc9bf8e4fcbe2205e5a2f3a31c539		https://www.encodeproject.org/files/ENCFF555YAB/@@download/ENCFF555YAB.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity, antibody characterized with exemption	biological replicates with identical biosample		
ENCFF814CGS	bed narrowPeak	peaks	ENCSR000BGZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TCF12-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF208RHL, ENCFF958RTR	4455185	ENCODE Processing Pipeline	782d288d4ded497bdcde03c923300814		https://www.encodeproject.org/files/ENCFF814CGS/@@download/ENCFF814CGS.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF785UNT	bed narrowPeak	peaks	ENCSR000BJS	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	genistein	100 nM	1 hour	ESR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF002HVX, ENCFF191RAG, ENCFF698QEQ	4613574	ENCODE Processing Pipeline	f2a2b44392d274b5d780315d6e5b37b8		https://www.encodeproject.org/files/ENCFF785UNT/@@download/ENCFF785UNT.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF528DMI	bed narrowPeak	peaks	ENCSR000DPS	ChIP-seq	NTR:0000480	AG09319	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF696BBG, ENCFF812WDD	4401073	ENCODE Processing Pipeline	820fbed7097a8adba626db1c162985ef		https://www.encodeproject.org/files/ENCFF528DMI/@@download/ENCFF528DMI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	NTR biosample		
ENCFF055UFA	bed narrowPeak	peaks	ENCSR000BHG	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	5 nM	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF285CTQ, ENCFF492RDK	4168468	ENCODE Processing Pipeline	0615a01d2769911bebbc5591f4e1beac		https://www.encodeproject.org/files/ENCFF055UFA/@@download/ENCFF055UFA.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF087MNA	bed narrowPeak	peaks	ENCSR000EFV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MAX-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF710NTS, ENCFF938QJA	5449286	ENCODE Processing Pipeline	4556722732e40deaaae36ab6421f2466		https://www.encodeproject.org/files/ENCFF087MNA/@@download/ENCFF087MNA.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF108QPP	bed narrowPeak	peaks	ENCSR549WAU	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				CTCF-human	DNA					False	2016-07-11	ENCODE				1							ENCFF209DDU, ENCFF753TRQ	5531553	ENCODE Processing Pipeline	fef8b2498bbc711a8215c421eb56bea4		https://www.encodeproject.org/files/ENCFF108QPP/@@download/ENCFF108QPP.bed.gz	hg19			released	control low read depth, antibody characterized with exemption			
ENCFF797GOG	bed narrowPeak	peaks	ENCSR573WYW	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF585RLR	5281716	ENCODE Processing Pipeline	6aa06e44d0d1f05ae1e789f397450794		https://www.encodeproject.org/files/ENCFF797GOG/@@download/ENCFF797GOG.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF628ZZL	bed narrowPeak	peaks	ENCSR000DZW	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				RFX5-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF110OHA, ENCFF276QQY, ENCFF545DZO	3842869	ENCODE Processing Pipeline	3de0644af2684ccabf3006cced7086dd		https://www.encodeproject.org/files/ENCFF628ZZL/@@download/ENCFF628ZZL.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF224GWF	bed narrowPeak	peaks	ENCSR000BNT	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF346RZT, ENCFF925FRM	4818281	ENCODE Processing Pipeline	c31a6a7181a1bd4c06f07cbba3a96d5c		https://www.encodeproject.org/files/ENCFF224GWF/@@download/ENCFF224GWF.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth, insufficient replicate concordance	
ENCFF536YJT	bed narrowPeak	peaks	ENCSR000BNR	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				HDAC2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF101PTT, ENCFF356DXM	4194122	ENCODE Processing Pipeline	e12b8b3c9acc5a466cbdefcdaa72a1e3		https://www.encodeproject.org/files/ENCFF536YJT/@@download/ENCFF536YJT.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample		
ENCFF955NAK	bed narrowPeak	peaks	ENCSR000DZY	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				NFE2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF420MOQ, ENCFF570FPY	5479	ENCODE Processing Pipeline	b1936af0d64b4ab0da80648a0919ba88		https://www.encodeproject.org/files/ENCFF955NAK/@@download/ENCFF955NAK.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample	control insufficient read depth	
ENCFF902CAT	bed narrowPeak	peaks	ENCSR000EBW	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				ZNF143-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF138HXG, ENCFF599MVB	5160091	ENCODE Processing Pipeline	ad3aaa9c1dc132c5833b11faf7921238		https://www.encodeproject.org/files/ENCFF902CAT/@@download/ENCFF902CAT.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF976ZDJ	bed narrowPeak	peaks	ENCSR000BHU	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				RXRA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF472OOV, ENCFF881TVG	4715135	ENCODE Processing Pipeline	d285161d03f747e315842948f5b89f3d		https://www.encodeproject.org/files/ENCFF976ZDJ/@@download/ENCFF976ZDJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient replicate concordance	missing control alignments
ENCFF658PRB	bed narrowPeak	peaks	ENCSR000DYB	ChIP-seq	EFO:0001260	WI38	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF681UDE, ENCFF720CUU	3859097	ENCODE Processing Pipeline	7e18aacfd30ad12f732a1a305f7f28a3		https://www.encodeproject.org/files/ENCFF658PRB/@@download/ENCFF658PRB.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking		insufficient read depth	
ENCFF695SDJ	bed narrowPeak	peaks	ENCSR000FAV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		30.0 minute	STAT1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF650MOB, ENCFF764OHG	2226729	ENCODE Processing Pipeline	e5fa53b68f9680bfff30fcb11a3997e2		https://www.encodeproject.org/files/ENCFF695SDJ/@@download/ENCFF695SDJ.bed.gz	hg19			released	control low read depth	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF570BGF	bed narrowPeak	peaks	ENCSR000EGA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TBL1XR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF676WXJ, ENCFF710NTS	5126978	ENCODE Processing Pipeline	3dbc54e6e80b80390a000d4502766d78		https://www.encodeproject.org/files/ENCFF570BGF/@@download/ENCFF570BGF.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF652LUF	bed narrowPeak	peaks	ENCSR000BQN	ChIP-seq	EFO:0005234	PFSK-1	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF041XFO, ENCFF741GJT	1938123	ENCODE Processing Pipeline	d57001c9cefaa2309b6101ad50938784		https://www.encodeproject.org/files/ENCFF652LUF/@@download/ENCFF652LUF.bed.gz	hg19			released	control low read depth, low read length, borderline replicate concordance	biological replicates with identical biosample	insufficient read depth	
ENCFF113DAW	bed narrowPeak	peaks	ENCSR000AOO	ChIP-seq	CL:0000127	astrocyte	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF191SLR, ENCFF350LQZ, ENCFF717LQB	2926748	ENCODE Processing Pipeline	e4f9f3a12e9ca2ddc1ff6d8b828d1ff7		https://www.encodeproject.org/files/ENCFF113DAW/@@download/ENCFF113DAW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity	NTR biosample	insufficient read depth	
ENCFF001XNE	bed narrowPeak	peaks	ENCSR000DQY	ChIP-seq	EFO:0005353	GM12801	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF001HBB	348426	John Stamatoyannopoulos, UW	0937a2f281cf29fb441eb5ebd93fb187		https://www.encodeproject.org/files/ENCFF001XNE/@@download/ENCFF001XNE.bed.gz	hg19			released	control low read depth	inconsistent mapped reads lengths	insufficient read length	extremely low read depth
ENCFF002DCF	bed narrowPeak	optimal idr thresholded peaks	ENCSR000DQY	ChIP-seq	EFO:0005353	GM12801	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF001HBB	54731	ENCODE Consortium Analysis Working Group	596392705bd0e7954538494d7f40be01		https://www.encodeproject.org/files/ENCFF002DCF/@@download/ENCFF002DCF.bed.gz	hg19			released	control low read depth	inconsistent mapped reads lengths	insufficient read length	extremely low read depth
ENCFF978PVD	bed narrowPeak	peaks	ENCSR000DQY	ChIP-seq	EFO:0005353	GM12801	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF277HVR, ENCFF719YWQ	1065559	ENCODE Processing Pipeline	8081abaedd896f40b8d1005cae14d10c		https://www.encodeproject.org/files/ENCFF978PVD/@@download/ENCFF978PVD.bed.gz	hg19			released	control low read depth	inconsistent mapped reads lengths	insufficient read length	extremely low read depth
ENCFF221BNG	bed narrowPeak	peaks	ENCSR000EVU	ChIP-seq	CL:0002618	endothelial cell of umbilical vein	primary cell	Homo sapiens				FOS-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF379GUA, ENCFF601TQG	4326814	ENCODE Processing Pipeline	05f70fab58f708b8a00ab08b76fafae1		https://www.encodeproject.org/files/ENCFF221BNG/@@download/ENCFF221BNG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample, duplicate lane review	insufficient read depth	
ENCFF157CCV	bed narrowPeak	peaks	ENCSR000BLE	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				FOXA1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF074KQO, ENCFF334MOO, ENCFF346RZT	5711586	ENCODE Processing Pipeline	59d72d95c35bacf00f7f0b1a0cdfb2d7		https://www.encodeproject.org/files/ENCFF157CCV/@@download/ENCFF157CCV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF451WEI	bed narrowPeak	peaks	ENCSR000BIZ	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	ESR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF277EKP, ENCFF279XQE	4065145	ENCODE Processing Pipeline	d00e3137be38bb46c7bd1a1e9ff01750		https://www.encodeproject.org/files/ENCFF451WEI/@@download/ENCFF451WEI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF433NME	bed narrowPeak	peaks	ENCSR000BIU	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				USF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF319RMX, ENCFF356DXM	4147598	ENCODE Processing Pipeline	8b2e89d72faad863a6227d04785d7ebf		https://www.encodeproject.org/files/ENCFF433NME/@@download/ENCFF433NME.bed.gz	hg19			released	low read length, low read depth	biological replicates with identical biosample		
ENCFF973ZCY	bed narrowPeak	peaks	ENCSR000BQA	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				ZBTB7A-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF382BNF, ENCFF710MZA	4248723	ENCODE Processing Pipeline	d2d3bbbc4cb7e5e3e6bbb5b17306c535		https://www.encodeproject.org/files/ENCFF973ZCY/@@download/ENCFF973ZCY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF674BPH	bed narrowPeak	peaks	ENCSR000BKH	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BCLAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF144FIS, ENCFF750MIM	755262	ENCODE Processing Pipeline	0dd0eeeb0b8df3d7fc9612b201349848		https://www.encodeproject.org/files/ENCFF674BPH/@@download/ENCFF674BPH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, mixed read lengths	biological replicates with identical biosample	control insufficient read depth	
ENCFF630PWI	bed narrowPeak	peaks	ENCSR000DYZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TBL1XR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF581YGH	4523214	ENCODE Processing Pipeline	d588aa903bae23565f688e60e4433892		https://www.encodeproject.org/files/ENCFF630PWI/@@download/ENCFF630PWI.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF947WYS	bed narrowPeak	peaks	ENCSR000EHJ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		6.0 hour	STAT1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF331ARQ, ENCFF972AUH	1865185	ENCODE Processing Pipeline	448a218d0b8b82117f2a236becd6d1c4		https://www.encodeproject.org/files/ENCFF947WYS/@@download/ENCFF947WYS.bed.gz	hg19			released	control low read depth, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF547PLM	bed narrowPeak	peaks	ENCSR000ECC	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				NRF1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF563ODJ, ENCFF599MVB	3842919	ENCODE Processing Pipeline	8a6974cded2ec2a82d697875422697da		https://www.encodeproject.org/files/ENCFF547PLM/@@download/ENCFF547PLM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF379HMO	bed narrowPeak	peaks	ENCSR000ARO	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF208SHP, ENCFF250VFW, ENCFF517CBX	5060726	ENCODE Processing Pipeline	a7a9bbf95498a766108e4e19e4588e0f		https://www.encodeproject.org/files/ENCFF379HMO/@@download/ENCFF379HMO.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking			missing control alignments
ENCFF156VOX	bed narrowPeak	peaks	ENCSR000DYV	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF950RDW	4127787	ENCODE Processing Pipeline	5fb4ad72b7d1e5259ddfb37a52de0c4a		https://www.encodeproject.org/files/ENCFF156VOX/@@download/ENCFF156VOX.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample, inconsistent mapped reads lengths		
ENCFF502RRE	bed narrowPeak	peaks	ENCSR251OVJ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				SMAD5-human	DNA					False	2016-02-02	ENCODE				1							ENCFF840IOC, ENCFF927EKA	5696563	ENCODE Processing Pipeline	32f2bd9019aab85b93463fbbde3fa570		https://www.encodeproject.org/files/ENCFF502RRE/@@download/ENCFF502RRE.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF648NVD	bed narrowPeak	peaks	ENCSR996ESX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NFRKB-human	DNA					False	2018-01-26	ENCODE				1							ENCFF581ZJL, ENCFF719VRZ	6216410	ENCODE Processing Pipeline	87ad634f7b226f042012f921a2cbbf20		https://www.encodeproject.org/files/ENCFF648NVD/@@download/ENCFF648NVD.bed.gz	hg19			released	mild to moderate bottlenecking, low read depth	experiment not submitted to GEO	partially characterized antibody	
ENCFF477EJA	bed narrowPeak	peaks	ENCSR761RDB	ChIP-seq	UBERON:0001157	transverse colon	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF534JTX	5364675	ENCODE Processing Pipeline	160bcee42e6ba15647b39857e8fdb60c		https://www.encodeproject.org/files/ENCFF477EJA/@@download/ENCFF477EJA.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF073TAO	bed narrowPeak	peaks	ENCSR779NON	ChIP-seq	UBERON:0010414	omental fat pad	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF012SRD	5908314	ENCODE Processing Pipeline	9f48faafd5fc62fa7eb8cb62d40b4acb		https://www.encodeproject.org/files/ENCFF073TAO/@@download/ENCFF073TAO.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF245JXB	bed narrowPeak	peaks	ENCSR450BLH	ChIP-seq	UBERON:0002369	adrenal gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF259DRG, ENCFF837NJP	7170562	ENCODE Processing Pipeline	a44cb707f8b90ef0f032ad67b19427dd		https://www.encodeproject.org/files/ENCFF245JXB/@@download/ENCFF245JXB.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF400JWL	bed narrowPeak	peaks	ENCSR000BMV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				FOSL1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF750MIM, ENCFF846HET	3916390	ENCODE Processing Pipeline	486a998417a0cec22b14892410863eb3		https://www.encodeproject.org/files/ENCFF400JWL/@@download/ENCFF400JWL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	
ENCFF093WNM	bed narrowPeak	peaks	ENCSR000DZS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				BRCA1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF080UUC, ENCFF110OHA, ENCFF545DZO	35610	ENCODE Processing Pipeline	a5a9f0712ebc4d0f98401a4fc751fbe4		https://www.encodeproject.org/files/ENCFF093WNM/@@download/ENCFF093WNM.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient replicate concordance	
ENCFF162CMX	bed narrowPeak	peaks	ENCSR000EZU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		6.0 hour	MYC-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF331ARQ, ENCFF786FUF	2638510	ENCODE Processing Pipeline	f5b08c1bb672d0c431f41530b2bea7fe		https://www.encodeproject.org/files/ENCFF162CMX/@@download/ENCFF162CMX.bed.gz	hg19			released	control low read depth, borderline replicate concordance, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF542XFE	bed narrowPeak	peaks	ENCSR000DSZ	ChIP-seq	CL:0002603	astrocyte of the cerebellum	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF188FPI, ENCFF935VDG	4274351	ENCODE Processing Pipeline	4e17e26fd1b6a5c426615f1e6b8b4972		https://www.encodeproject.org/files/ENCFF542XFE/@@download/ENCFF542XFE.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity		insufficient read depth	missing control alignments
ENCFF070OIO	bed narrowPeak	peaks	ENCSR000EFI	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF191DFR, ENCFF601AUG, ENCFF847VPR	4526183	ENCODE Processing Pipeline	5e6f91d553784df46f528446508d89e0		https://www.encodeproject.org/files/ENCFF070OIO/@@download/ENCFF070OIO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		missing control alignments
ENCFF371ZTN	bed narrowPeak	peaks	ENCSR000ATS	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				SUZ12-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF162SNW, ENCFF727XHW, ENCFF850EIY	7297537	ENCODE Processing Pipeline	ac165fa23d62749776220e355048b68c		https://www.encodeproject.org/files/ENCFF371ZTN/@@download/ENCFF371ZTN.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths, moderate library complexity	inconsistent mapped reads lengths		
ENCFF290QTC	bed narrowPeak	peaks	ENCSR000DWQ	ChIP-seq	CL:1001608	foreskin fibroblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF162IBF, ENCFF987CLO	4172588	ENCODE Processing Pipeline	c83f9d4b944561148e95b446b35f20b5		https://www.encodeproject.org/files/ENCFF290QTC/@@download/ENCFF290QTC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			missing control alignments
ENCFF232MQQ	bed narrowPeak	peaks	ENCSR000DVQ	ChIP-seq	CL:0002558	fibroblast of villous mesenchyme	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF569PMD, ENCFF807YUN	4278177	ENCODE Processing Pipeline	e54e5a4b72715fa2cc2debc8c420f6fe		https://www.encodeproject.org/files/ENCFF232MQQ/@@download/ENCFF232MQQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth		insufficient read depth	
ENCFF280XEL	bed narrowPeak	peaks	ENCSR000BLP	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MAX-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF701KUD, ENCFF825FLR	5191119	ENCODE Processing Pipeline	e509edea4142432ef5a6bd1bb6fcb50b		https://www.encodeproject.org/files/ENCFF280XEL/@@download/ENCFF280XEL.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth	biological replicates with identical biosample		
ENCFF277KXQ	bed narrowPeak	peaks	ENCSR000BLF	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				HNF4A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF346RZT, ENCFF479RIQ	2869150	ENCODE Processing Pipeline	9d8580ba0249475bc978a9694b61ede8		https://www.encodeproject.org/files/ENCFF277KXQ/@@download/ENCFF277KXQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF517GFP	bed narrowPeak	peaks	ENCSR000FAZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon alpha		30.0 minute	MYC-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF650MOB, ENCFF929JOF	3101096	ENCODE Processing Pipeline	e2be7bd7967e11d555813e58abd60384		https://www.encodeproject.org/files/ENCFF517GFP/@@download/ENCFF517GFP.bed.gz	hg19			released	control low read depth, borderline replicate concordance	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF052OWI	bed narrowPeak	peaks	ENCSR000EZW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		6.0 hour	JUN-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF331ARQ, ENCFF691WRY	2438263	ENCODE Processing Pipeline	8e39fba942c4a657192a5716e9c84702		https://www.encodeproject.org/files/ENCFF052OWI/@@download/ENCFF052OWI.bed.gz	hg19			released	control low read depth, borderline replicate concordance, mixed read lengths	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF943NWC	bed narrowPeak	peaks	ENCSR000BGA	ChIP-seq	EFO:0005234	PFSK-1	cell line	Homo sapiens				FOXP2-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF294SLK, ENCFF320MKV	4381800	ENCODE Processing Pipeline	ff709f8932822e4c965020216e08c271		https://www.encodeproject.org/files/ENCFF943NWC/@@download/ENCFF943NWC.bed.gz	hg19			released	control low read depth, borderline replicate concordance, inconsistent platforms	biological replicates with identical biosample	insufficient read depth	extremely low read depth, extremely low read length
ENCFF838ZHL	bed narrowPeak	peaks	ENCSR000BRL	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	SIX5-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF218ESX, ENCFF864UEQ	5980557	ENCODE Processing Pipeline	a169d3a0d116ac4d0fc13d4112e1f1ce		https://www.encodeproject.org/files/ENCFF838ZHL/@@download/ENCFF838ZHL.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF493TPH	bed narrowPeak	peaks	ENCSR000BJH	ChIP-seq	EFO:0002785	GM12891	cell line	Homo sapiens				PAX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF376UIU, ENCFF755PSY	2982299	ENCODE Processing Pipeline	c7574401499458a16387560a781d573c		https://www.encodeproject.org/files/ENCFF493TPH/@@download/ENCFF493TPH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth, severe bottlenecking	
ENCFF645FWE	bed narrowPeak	peaks	ENCSR000DWH	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF340AIJ, ENCFF860VSM	4848814	ENCODE Processing Pipeline	c0f9e12349771232e46952409185fd6a		https://www.encodeproject.org/files/ENCFF645FWE/@@download/ENCFF645FWE.bed.gz	hg19			released	low read length, low read depth			
ENCFF542MFI	bed narrowPeak	peaks	ENCSR000BQE	ChIP-seq	EFO:0005718	Ishikawa	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	CTCF-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF279XQE, ENCFF477SJG	4000778	ENCODE Processing Pipeline	d6e6bfd129d3f8acce8ab9083367880e		https://www.encodeproject.org/files/ENCFF542MFI/@@download/ENCFF542MFI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF585NXD	bed narrowPeak	peaks	ENCSR000EHK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		30.0 minute	STAT1-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF287WTN, ENCFF739PBB	2492541	ENCODE Processing Pipeline	fa09b91df9b9e0ad5cd4892b4d9449f9		https://www.encodeproject.org/files/ENCFF585NXD/@@download/ENCFF585NXD.bed.gz	hg19			released	mixed read lengths	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, insufficient replicate concordance, insufficient read length	
ENCFF767PWR	bed narrowPeak	peaks	ENCSR584GHV	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				NFE2L2-human	DNA					False	2014-07-07	ENCODE				1							ENCFF123GAA, ENCFF863STQ	4890176	ENCODE Processing Pipeline	ca6a707d4723826b6a0a599ed69c3325		https://www.encodeproject.org/files/ENCFF767PWR/@@download/ENCFF767PWR.bed.gz	hg19			released	low read length, borderline replicate concordance			
ENCFF745GHM	bed narrowPeak	peaks	ENCSR046INL	ChIP-seq	UBERON:0000473	testis	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF991CXG	5150204	ENCODE Processing Pipeline	38ed709911e0f7a34d5f0bd3aea6834d		https://www.encodeproject.org/files/ENCFF745GHM/@@download/ENCFF745GHM.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF338SNH	bed narrowPeak	peaks	ENCSR000EBZ	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				JUND-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF437UHI, ENCFF599MVB	5302704	ENCODE Processing Pipeline	d3cd21bd45637001a6a246301c7291c1		https://www.encodeproject.org/files/ENCFF338SNH/@@download/ENCFF338SNH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF711IWR	bed narrowPeak	peaks	ENCSR000EZT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens	interferon gamma		30.0 minute	JUN-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF287WTN, ENCFF978GBP	2129248	ENCODE Processing Pipeline	6544a6b0ba76e1f622f6e2ca2b5b305d		https://www.encodeproject.org/files/ENCFF711IWR/@@download/ENCFF711IWR.bed.gz	hg19			released	mild to moderate bottlenecking, mixed read lengths	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, insufficient read length	
ENCFF935KIG	bed narrowPeak	peaks	ENCSR000BHM	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF687USK	3407756	ENCODE Processing Pipeline	7b58f1bde9908c70d4575c07b2ce1c31		https://www.encodeproject.org/files/ENCFF935KIG/@@download/ENCFF935KIG.bed.gz	hg19			released	low read length, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF323HOG	bed narrowPeak	peaks	ENCSR000BGK	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF334MOO, ENCFF776GGM	4434879	ENCODE Processing Pipeline	65a64cbb6c73d2ce7a1dec80ebbfa186		https://www.encodeproject.org/files/ENCFF323HOG/@@download/ENCFF323HOG.bed.gz	hg19			released	control low read depth, low read length, low read depth, borderline replicate concordance	biological replicates with identical biosample		missing control alignments
ENCFF938NIP	bed narrowPeak	peaks	ENCSR964BKO	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF288DHW, ENCFF894GZN	6788148	ENCODE Processing Pipeline	881e4ad73aa8cb3ea20276d0f000d439		https://www.encodeproject.org/files/ENCFF938NIP/@@download/ENCFF938NIP.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF320LNM	bed narrowPeak	peaks	ENCSR000DYD	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF292MAD, ENCFF296BML, ENCFF512WDI	4801539	ENCODE Processing Pipeline	3cf14959a446c6703ff85a94b0c19eae		https://www.encodeproject.org/files/ENCFF320LNM/@@download/ENCFF320LNM.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent platforms, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF740XZM	bed narrowPeak	peaks	ENCSR000BRK	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TEAD4-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF386SKS, ENCFF522HDC	6214545	ENCODE Processing Pipeline	b15faa2477afa58c67eb3d8a2425d543		https://www.encodeproject.org/files/ENCFF740XZM/@@download/ENCFF740XZM.bed.gz	hg19			released	low read length, inconsistent platforms	biological replicates with identical biosample		
ENCFF178CPV	bed narrowPeak	peaks	ENCSR000ARD	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF232FPZ, ENCFF624TPS, ENCFF689FFZ	3611423	ENCODE Processing Pipeline	aa57a289d0f83c5406354f8f0fbef9cf		https://www.encodeproject.org/files/ENCFF178CPV/@@download/ENCFF178CPV.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, borderline replicate concordance, inconsistent platforms		control insufficient read depth, insufficient read depth	
ENCFF083HDR	bed narrowPeak	peaks	ENCSR000BGI	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				USF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF281OFW, ENCFF416BIN, ENCFF818ZLY	4469694	ENCODE Processing Pipeline	03ef3cbb3fb149e90b9b0bd0f99b3e77		https://www.encodeproject.org/files/ENCFF083HDR/@@download/ENCFF083HDR.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths	biological replicates with identical biosample	insufficient read depth	extremely low read length
ENCFF506XWQ	bed narrowPeak	peaks	ENCSR684NJD	ChIP-seq	UBERON:0000945	stomach	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF983YSM	6431186	ENCODE Processing Pipeline	987169f530e84dbad71415b43f57d6fc		https://www.encodeproject.org/files/ENCFF506XWQ/@@download/ENCFF506XWQ.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF596KVH	bed narrowPeak	peaks	ENCSR000EFS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				JUN-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF703KIU, ENCFF710NTS	4250099	ENCODE Processing Pipeline	25bcfe841e4379e12213ec46fd0af751		https://www.encodeproject.org/files/ENCFF596KVH/@@download/ENCFF596KVH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF263ADC	bed narrowPeak	peaks	ENCSR000EFJ	ChIP-seq	EFO:0001196	IMR-90	cell line	Homo sapiens				RAD21-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF191DFR, ENCFF279TIW, ENCFF601AUG	5262024	ENCODE Processing Pipeline	6a22bc02bdba44937419fc7fe2baf9e6		https://www.encodeproject.org/files/ENCFF263ADC/@@download/ENCFF263ADC.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF450XID	bed narrowPeak	peaks	ENCSR606TNN	ChIP-seq	UBERON:0000996	vagina	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF197PVC, ENCFF662LAZ	6170994	ENCODE Processing Pipeline	b1a430c00c8370217dc3d85c7b14bc81		https://www.encodeproject.org/files/ENCFF450XID/@@download/ENCFF450XID.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF425BCQ	bed narrowPeak	peaks	ENCSR000DTW	ChIP-seq	EFO:0001182	HEK293	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF020GGX, ENCFF986XGP	3434760	ENCODE Processing Pipeline	10a066425c1f4c4901f1e63c66a31b81		https://www.encodeproject.org/files/ENCFF425BCQ/@@download/ENCFF425BCQ.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth			extremely low read depth
ENCFF976ZTX	bed narrowPeak	peaks	ENCSR000EFW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				UBTF-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF498SAC, ENCFF732TLR, ENCFF832GXU	5026248	ENCODE Processing Pipeline	e1c449a8b60fd62bdb4142bad0d04618		https://www.encodeproject.org/files/ENCFF976ZTX/@@download/ENCFF976ZTX.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF626GCR	bed narrowPeak	peaks	ENCSR000BGS	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF305OWM, ENCFF958RTR	4217685	ENCODE Processing Pipeline	713f7c15938a74780918c02c698d614e		https://www.encodeproject.org/files/ENCFF626GCR/@@download/ENCFF626GCR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		
ENCFF318UXE	bed narrowPeak	peaks	ENCSR000BLI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				E2F6-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF032EXY, ENCFF701KUD	2363535	ENCODE Processing Pipeline	adc1ffb997c20bbb67d594a28cededba		https://www.encodeproject.org/files/ENCFF318UXE/@@download/ENCFF318UXE.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth	biological replicates with identical biosample	insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF820XSG	bed narrowPeak	peaks	ENCSR000BLX	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens	all-trans-retinoic acid	6 μM	48 hour	CTCF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF108EFL, ENCFF587REM	3409067	ENCODE Processing Pipeline	5d8b401c22832a544d749ac4071014be		https://www.encodeproject.org/files/ENCFF820XSG/@@download/ENCFF820XSG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF608RBZ	bed narrowPeak	peaks	ENCSR000BKU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				YY1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF750MIM, ENCFF974OCA	3450296	ENCODE Processing Pipeline	3f12a4be35f1c4062bfcc2b1a3d8e56e		https://www.encodeproject.org/files/ENCFF608RBZ/@@download/ENCFF608RBZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, insufficient replicate concordance	extremely low read depth
ENCFF120OKL	bed narrowPeak	peaks	ENCSR000BLU	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				TAF7-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF748LJL	4445050	ENCODE Processing Pipeline	d6a9ced05b3809dde3a36c8b2649333f		https://www.encodeproject.org/files/ENCFF120OKL/@@download/ENCFF120OKL.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, low read depth	biological replicates with identical biosample		
ENCFF738UPC	bed narrowPeak	peaks	ENCSR000BKT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				USF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF528NQV, ENCFF750MIM	4056488	ENCODE Processing Pipeline	78a14c1120d15e8f3b0da0e358904143		https://www.encodeproject.org/files/ENCFF738UPC/@@download/ENCFF738UPC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, poor library complexity, severe bottlenecking	extremely low read depth
ENCFF072BMK	bed narrowPeak	peaks	ENCSR000EGX	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF433CEB, ENCFF710NTS	5075327	ENCODE Processing Pipeline	baca76bc8dd54ade1118dfe4cbaefb37		https://www.encodeproject.org/files/ENCFF072BMK/@@download/ENCFF072BMK.bed.gz	hg19			released	low read length, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF371JLL	bed narrowPeak	peaks	ENCSR663WAR	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				REST-human	DNA					False	2017-01-08	ENCODE				1							ENCFF243MTV, ENCFF277NVQ, ENCFF727XHW	6668538	ENCODE Processing Pipeline	1712aedc81671a652253f9eab6e6709f		https://www.encodeproject.org/files/ENCFF371JLL/@@download/ENCFF371JLL.bed.gz	hg19			released	low read length, low read depth, antibody characterized with exemption, mixed read lengths			
ENCFF875HXY	bed narrowPeak	peaks	ENCSR000BMD	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ELF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF649QHV, ENCFF701KUD	1602818	ENCODE Processing Pipeline	81ba7eff0351c58785226e55900ea318		https://www.encodeproject.org/files/ENCFF875HXY/@@download/ENCFF875HXY.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking	biological replicates with identical biosample	poor library complexity, insufficient replicate concordance, severe bottlenecking	extremely low read depth
ENCFF255EDE	bed narrowPeak	peaks	ENCSR203QEB	ChIP-seq	EFO:0002713	Panc1	cell line	Homo sapiens				CTCF-human	DNA					False	2017-07-21	ENCODE				1							ENCFF393CEV, ENCFF938FXZ	7008257	ENCODE Processing Pipeline	5b9c43e51c405a24c14ff682f59f7664		https://www.encodeproject.org/files/ENCFF255EDE/@@download/ENCFF255EDE.bed.gz	hg19			released	mild to moderate bottlenecking	NTR biosample		
ENCFF489ZRF	bed narrowPeak	peaks	ENCSR000DZC	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				RCOR1-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF106HCF, ENCFF110OHA, ENCFF545DZO	4595594	ENCODE Processing Pipeline	bbdc5bffc038217e3744e5405b4d1ceb		https://www.encodeproject.org/files/ENCFF489ZRF/@@download/ENCFF489ZRF.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF965BIL	bed narrowPeak	peaks	ENCSR000ARH	ChIP-seq	CL:0000515	skeletal muscle myoblast	primary cell	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF003XTF, ENCFF208RCO, ENCFF543GAK	4607297	ENCODE Processing Pipeline	0db6f3a2ecbf24296eff6f7f8c6e67c2		https://www.encodeproject.org/files/ENCFF965BIL/@@download/ENCFF965BIL.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms			
ENCFF967EHX	bed narrowPeak	peaks	ENCSR000DYP	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				ZNF384-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF110OHA, ENCFF463YMY, ENCFF545DZO	4220480	ENCODE Processing Pipeline	a87b9a89e23b58761891171cd2a7972f		https://www.encodeproject.org/files/ENCFF967EHX/@@download/ENCFF967EHX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF860SHD	bed narrowPeak	peaks	ENCSR635XLM	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF108NWA	4668753	ENCODE Processing Pipeline	dbb1280f1b1472f7675aa6b8c62d2b1f		https://www.encodeproject.org/files/ENCFF860SHD/@@download/ENCFF860SHD.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF104VHX	bed narrowPeak	peaks	ENCSR970UZD	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF262AKB, ENCFF751PAR	6703589	ENCODE Processing Pipeline	39a6843c915a672793f7e5e5bb96a704		https://www.encodeproject.org/files/ENCFF104VHX/@@download/ENCFF104VHX.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF336VRJ	bed narrowPeak	peaks	ENCSR000DLB	ChIP-seq	EFO:0005346	GM13977	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF075LLZ, ENCFF085RVS	3514521	ENCODE Processing Pipeline	1c0b9cf2b391dac91f5c84942cb675da		https://www.encodeproject.org/files/ENCFF336VRJ/@@download/ENCFF336VRJ.bed.gz	hg19			released	control low read depth, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF585OAO	bed narrowPeak	peaks	ENCSR000ASE	ChIP-seq	CL:0002551	fibroblast of dermis	primary cell	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF005RXL, ENCFF138XPE, ENCFF530XPP	5268005	ENCODE Processing Pipeline	b3856c6679fc00a1712e3de42b8620f5		https://www.encodeproject.org/files/ENCFF585OAO/@@download/ENCFF585OAO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth	
ENCFF781THQ	bed narrowPeak	peaks	ENCSR000EIC	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF089TJI, ENCFF666ZPP, ENCFF898GKX	4888991	ENCODE Processing Pipeline	61add53be443cca89b2fa618eb62f339		https://www.encodeproject.org/files/ENCFF781THQ/@@download/ENCFF781THQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF200SPQ	bed narrowPeak	peaks	ENCSR000BIJ	ChIP-seq	EFO:0002785	GM12891	cell line	Homo sapiens				SPI1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF450BQJ, ENCFF864ASU	4645128	ENCODE Processing Pipeline	a29d03a40452416dadcf358281a9ed38		https://www.encodeproject.org/files/ENCFF200SPQ/@@download/ENCFF200SPQ.bed.gz	hg19			released	control low read depth, low read length, low read depth	biological replicates with identical biosample		
ENCFF543QRY	bed narrowPeak	peaks	ENCSR000BOT	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF382BNF, ENCFF547MVS	4619504	ENCODE Processing Pipeline	67f14e74605a970c000141095c24671f		https://www.encodeproject.org/files/ENCFF543QRY/@@download/ENCFF543QRY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		
ENCFF114UVX	bed narrowPeak	peaks	ENCSR843ZUP	ChIP-seq	CL:0002319	neural cell	in vitro differentiated cells	Homo sapiens				EP300-human	DNA					False	2014-07-07	ENCODE				1							ENCFF080XQT, ENCFF204KUW, ENCFF980CFV	6893043	ENCODE Processing Pipeline	c568990afad79c1d261d67889408c4f8		https://www.encodeproject.org/files/ENCFF114UVX/@@download/ENCFF114UVX.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF070BNL	bed narrowPeak	peaks	ENCSR000BNM	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TAF7-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF335FQW, ENCFF750MIM	96930	ENCODE Processing Pipeline	85c6f61e40a3843197f460a194cf9805		https://www.encodeproject.org/files/ENCFF070BNL/@@download/ENCFF070BNL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	
ENCFF622MTR	bed narrowPeak	peaks	ENCSR000APM	ChIP-seq	CL:0002551	fibroblast of dermis	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF005RXL, ENCFF138XPE, ENCFF888NSJ	2587546	ENCODE Processing Pipeline	4997657dc1df0656efb6e59a94f8b6a0		https://www.encodeproject.org/files/ENCFF622MTR/@@download/ENCFF622MTR.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	NTR biosample	insufficient read depth, severe bottlenecking	missing control alignments
ENCFF427OVX	bed narrowPeak	peaks	ENCSR000ATC	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF162NDI, ENCFF385UZW, ENCFF451SVK	7129465	ENCODE Processing Pipeline	3db874c77069df603d5724689104ce58		https://www.encodeproject.org/files/ENCFF427OVX/@@download/ENCFF427OVX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, inconsistent platforms			
ENCFF770MLZ	bed narrowPeak	peaks	ENCSR000EYB	ChIP-seq	EFO:0002717	SH-SY5Y	cell line	Homo sapiens				GATA2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF610BER, ENCFF826FNF	5575113	ENCODE Processing Pipeline	25f99e416f6c1f21581078ff0309cab0		https://www.encodeproject.org/files/ENCFF770MLZ/@@download/ENCFF770MLZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF756FVQ	bed narrowPeak	peaks	ENCSR000AVB	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				HDAC2-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF243MTV, ENCFF461HDT, ENCFF727XHW	6346222	ENCODE Processing Pipeline	a79923dae73edffa84562971f7d18b53		https://www.encodeproject.org/files/ENCFF756FVQ/@@download/ENCFF756FVQ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity			
ENCFF722MDG	bed narrowPeak	peaks	ENCSR000BNH	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF356DXM, ENCFF639ACF	4367319	ENCODE Processing Pipeline	ca9c0b3ee19459d7e0f10bc791e8b4e9		https://www.encodeproject.org/files/ENCFF722MDG/@@download/ENCFF722MDG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms, moderate library complexity	biological replicates with identical biosample		missing control alignments
ENCFF504CYN	bed narrowPeak	peaks	ENCSR713SXF	ChIP-seq	CL:0000746	cardiac muscle cell	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA					False	2017-11-13	ENCODE				1							ENCFF348ECW, ENCFF491GAC	5385312	ENCODE Processing Pipeline	ae0d017aa58e276fc61fa7374ba22f93		https://www.encodeproject.org/files/ENCFF504CYN/@@download/ENCFF504CYN.bed.gz	hg19			released	antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment	
ENCFF511ZEU	bed narrowPeak	peaks	ENCSR000BNE	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				EGR1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF052PXH, ENCFF750MIM	4238268	ENCODE Processing Pipeline	3d1d035ab43db38b2cad069a26cc2e8b		https://www.encodeproject.org/files/ENCFF511ZEU/@@download/ENCFF511ZEU.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	
ENCFF238OBY	bed narrowPeak	peaks	ENCSR000EUI	ChIP-seq	EFO:0005333	GM08714	cell line	Homo sapiens				ZNF274-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF295UCD, ENCFF650DWC	5522621	ENCODE Processing Pipeline	b58467a5c13936b07fd31b5fda9924ce		https://www.encodeproject.org/files/ENCFF238OBY/@@download/ENCFF238OBY.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF339XPB	bed narrowPeak	peaks	ENCSR000APF	ChIP-seq	CL:0000062	osteoblast	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF010EZQ, ENCFF196FGA, ENCFF233ITE	1690215	ENCODE Processing Pipeline	6c1d1d16dc53a4a51bd93db713ae9e71		https://www.encodeproject.org/files/ENCFF339XPB/@@download/ENCFF339XPB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	NTR biosample		extremely low read depth
ENCFF202BTH	bed narrowPeak	peaks	ENCSR000DMH	ChIP-seq	UBERON:0002048	lung	tissue	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF882SRJ, ENCFF896LIL	1250139	ENCODE Processing Pipeline	7eae5414e76070f87f5e76fe0d4984de		https://www.encodeproject.org/files/ENCFF202BTH/@@download/ENCFF202BTH.bed.gz	hg19			released	mild to moderate bottlenecking			control extremely low read depth, extremely low read depth
ENCFF853XFI	bed narrowPeak	peaks	ENCSR000DMR	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF602XLT, ENCFF823CUE	5398649	ENCODE Processing Pipeline	e1d166f3632183ab863b5f6a928269f3		https://www.encodeproject.org/files/ENCFF853XFI/@@download/ENCFF853XFI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample		
ENCFF571KJQ	bed narrowPeak	peaks	ENCSR307PFP	ChIP-seq	UBERON:0001150	body of pancreas	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF473HRH, ENCFF847NEY	7148874	ENCODE Processing Pipeline	0b1bee6b8255bda8362d44ac6f64c8f3		https://www.encodeproject.org/files/ENCFF571KJQ/@@download/ENCFF571KJQ.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF153LKX	bed narrowPeak	peaks	ENCSR000DMQ	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF124PFW, ENCFF602XLT	5556239	ENCODE Processing Pipeline	30524c665b93a993af908e1be828450c		https://www.encodeproject.org/files/ENCFF153LKX/@@download/ENCFF153LKX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF875UKZ	bed narrowPeak	peaks	ENCSR000BHE	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	500 pM	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF492RDK, ENCFF922TWG	4188656	ENCODE Processing Pipeline	7863ba2f2b8289828e96371ed1b5ed25		https://www.encodeproject.org/files/ENCFF875UKZ/@@download/ENCFF875UKZ.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF622IDZ	bed narrowPeak	peaks	ENCSR000BRS	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				NR2F2-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF522HDC, ENCFF717CDL	6199883	ENCODE Processing Pipeline	774fddafb4755bcf348c1ddbf015a7a7		https://www.encodeproject.org/files/ENCFF622IDZ/@@download/ENCFF622IDZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms	biological replicates with identical biosample		
ENCFF222LZR	bed narrowPeak	peaks	ENCSR000DTA	ChIP-seq	CL:2000044	brain microvascular endothelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF092GCH, ENCFF778CXN	4671117	ENCODE Processing Pipeline	c0d8191b3470523ba74e80141ecd67e9		https://www.encodeproject.org/files/ENCFF222LZR/@@download/ENCFF222LZR.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth			missing control alignments
ENCFF755LJZ	bed narrowPeak	peaks	ENCSR000EGI	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MAFF-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF160TSK, ENCFF710NTS	4579891	ENCODE Processing Pipeline	9bed18f9f50fe4fe253a79d9ac223fdd		https://www.encodeproject.org/files/ENCFF755LJZ/@@download/ENCFF755LJZ.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF447AUB	bed narrowPeak	peaks	ENCSR000DXD	ChIP-seq	CL:0002306	epithelial cell of proximal tubule	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF296JDR, ENCFF634UTF	4548581	ENCODE Processing Pipeline	d36a83fab519ffb7689f6387ce332a72		https://www.encodeproject.org/files/ENCFF447AUB/@@download/ENCFF447AUB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth			
ENCFF434LJJ	bed narrowPeak	peaks	ENCSR000DMM	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens				MYC-human	DNA		see document	see document		False	2012-08-27	ENCODE				1							ENCFF503BOT, ENCFF602XLT	5811613	ENCODE Processing Pipeline	1382c5b118a1d9af944efe50a9d027df		https://www.encodeproject.org/files/ENCFF434LJJ/@@download/ENCFF434LJJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	poor library complexity	
ENCFF656HTA	bed narrowPeak	peaks	ENCSR000ECE	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				RAD21-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF361FUX, ENCFF599MVB	4701422	ENCODE Processing Pipeline	cc99f3fb940e69afed4dbd187e7f1706		https://www.encodeproject.org/files/ENCFF656HTA/@@download/ENCFF656HTA.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF001UTK	bed narrowPeak	peaks	ENCSR000DMP	ChIP-seq	EFO:0001203	MCF-7	cell line	Homo sapiens	17β-estradiol	100 nM	45 minute	MYC-human	DNA		see document	see document		False	2011-03-17	ENCODE				1	1							385865	Vishwanath Iyer, UTA	bea123167eb09018fddc1f18affb7aa9		https://www.encodeproject.org/files/ENCFF001UTK/@@download/ENCFF001UTK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking	biological replicates with identical biosample, missing derived_from		
ENCFF099KUG	bed narrowPeak	peaks	ENCSR000DOT	ChIP-seq	EFO:0001200	MCF 10A	cell line	Homo sapiens	ethanol	0.01 percent	36.0 hour	FOS-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF079OBK, ENCFF425RUE	5634046	ENCODE Processing Pipeline	be521fd5b10c13fdad79b6360b7a41a4		https://www.encodeproject.org/files/ENCFF099KUG/@@download/ENCFF099KUG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, missing genetic modification characterization	duplicate lane review, biological replicates with identical biosample		
ENCFF999FLX	bed narrowPeak	peaks	ENCSR000BJN	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				TAF1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF292YHA, ENCFF388UBE, ENCFF782VTV	5560828	ENCODE Processing Pipeline	0fc07fb8e80a7b3c915d2f8e7daafab8		https://www.encodeproject.org/files/ENCFF999FLX/@@download/ENCFF999FLX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF435JAM	bed narrowPeak	peaks	ENCSR469POZ	ChIP-seq	UBERON:0001323	tibial nerve	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-08	ENCODE				1							ENCFF900VZW, ENCFF975GAM	6914692	ENCODE Processing Pipeline	e833e9698dc5df2dabd14273a537c736		https://www.encodeproject.org/files/ENCFF435JAM/@@download/ENCFF435JAM.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF621KLV	bed narrowPeak	peaks	ENCSR000BMW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				REST-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF294HHJ, ENCFF750MIM	2505082	ENCODE Processing Pipeline	ed746289c113d26f59115ce9fd2bf3fc		https://www.encodeproject.org/files/ENCFF621KLV/@@download/ENCFF621KLV.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF924YJI	bed narrowPeak	peaks	ENCSR000DUS	ChIP-seq	CL:0002327	mammary epithelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF268MTM, ENCFF620RYQ	3732065	ENCODE Processing Pipeline	ff075a5e7ab0ae978f67ef3324dac57e		https://www.encodeproject.org/files/ENCFF924YJI/@@download/ENCFF924YJI.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, inconsistent platforms			
ENCFF521MOS	bed narrowPeak	peaks	ENCSR000BNW	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SIX5-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF037BXU, ENCFF235CSW, ENCFF750MIM	4142355	ENCODE Processing Pipeline	585df9f882884542d2162608818d81f2		https://www.encodeproject.org/files/ENCFF521MOS/@@download/ENCFF521MOS.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	insufficient read depth	
ENCFF706QLS	bed narrowPeak	peaks	ENCSR000AKB	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF232FPZ, ENCFF389RQC, ENCFF624TPS	2436987	ENCODE Processing Pipeline	989f9f01a47be649827afbe7613f9e79		https://www.encodeproject.org/files/ENCFF706QLS/@@download/ENCFF706QLS.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, low read depth, mixed read lengths		control insufficient read depth, insufficient read depth	
ENCFF380UJY	bed narrowPeak	peaks	ENCSR000DRP	ChIP-seq	EFO:0001160	GM12873	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF471JZR, ENCFF968YYG	2610991	ENCODE Processing Pipeline	7c3b8151075c83a5570662febe59cd2a		https://www.encodeproject.org/files/ENCFF380UJY/@@download/ENCFF380UJY.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, moderate library complexity	missing raw data in replicate	insufficient read depth	missing control alignments
ENCFF940PJA	bed narrowPeak	peaks	ENCSR000EUQ	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				SUZ12-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF295PYU, ENCFF509ANO	4523991	ENCODE Processing Pipeline	7c7f44776efc18b3cd0702090a53d0f0		https://www.encodeproject.org/files/ENCFF940PJA/@@download/ENCFF940PJA.bed.gz	hg19			released	borderline replicate concordance, low read depth	biological replicates with identical biosample	insufficient read depth, insufficient read length	
ENCFF772NOR	bed narrowPeak	peaks	ENCSR000BQZ	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				STAT5A-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF508HCX, ENCFF892ZFJ	6796170	ENCODE Processing Pipeline	d2c09786f4febb2bd8af1b893b845f09		https://www.encodeproject.org/files/ENCFF772NOR/@@download/ENCFF772NOR.bed.gz	hg19			released	low read length, inconsistent platforms	biological replicates with identical biosample		
ENCFF450FYB	bed narrowPeak	peaks	ENCSR000DQN	ChIP-seq	EFO:0001099	Caco-2	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF054SRM, ENCFF610PHZ	3540401	ENCODE Processing Pipeline	a6f63c9f563d046e48146a95d85ce651		https://www.encodeproject.org/files/ENCFF450FYB/@@download/ENCFF450FYB.bed.gz	hg19			released	moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth		insufficient read depth, severe bottlenecking	
ENCFF496UYK	bed narrowPeak	peaks	ENCSR000BRH	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				MTA3-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF420JTZ, ENCFF508HCX	6892196	ENCODE Processing Pipeline	6249aeafbda77ae037a51105225000bc		https://www.encodeproject.org/files/ENCFF496UYK/@@download/ENCFF496UYK.bed.gz	hg19			released	low read length, borderline replicate concordance, inconsistent platforms	biological replicates with identical biosample		
ENCFF287WRJ	bed narrowPeak	peaks	ENCSR000EXL	ChIP-seq	EFO:0002713	Panc1	cell line	Homo sapiens				TCF7L2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF022SZB, ENCFF703KFY	5325369	ENCODE Processing Pipeline	aec98923b01bcecffa09d803dffb3ec5		https://www.encodeproject.org/files/ENCFF287WRJ/@@download/ENCFF287WRJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms	biological replicates with identical biosample		
ENCFF833TSX	bed narrowPeak	peaks	ENCSR492ZIW	ChIP-seq	UBERON:0002046	thyroid gland	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF334HAL, ENCFF899IHZ	6509134	ENCODE Processing Pipeline	e3812333d1f49ced5c48f4d37d476541		https://www.encodeproject.org/files/ENCFF833TSX/@@download/ENCFF833TSX.bed.gz	hg19			released	low read depth, antibody characterized with exemption			
ENCFF692UFO	bed narrowPeak	peaks	ENCSR000AUC	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				SUZ12-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF062OKC, ENCFF574XYY	3725047	ENCODE Processing Pipeline	0ddcc3900c596eb90ac5d29d5f721899		https://www.encodeproject.org/files/ENCFF692UFO/@@download/ENCFF692UFO.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, mixed read lengths	missing raw data in replicate	insufficient read depth, poor library complexity, insufficient replicate concordance, severe bottlenecking	
ENCFF484KKN	bed narrowPeak	peaks	ENCSR336PTS	ChIP-seq	NTR:0001226	Parathyroid adenoma	tissue	Homo sapiens				CTCF-human	DNA					False	2017-12-08	ENCODE				1							ENCFF273CUH, ENCFF638AQQ	5835324	ENCODE Processing Pipeline	ad4498a66795a909cdf6783ec83e7f56		https://www.encodeproject.org/files/ENCFF484KKN/@@download/ENCFF484KKN.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	NTR biosample, experiment not submitted to GEO	unreplicated experiment	
ENCFF900WDP	bed narrowPeak	peaks	ENCSR822CEA	ChIP-seq	CL:0002319	neural cell	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA					False	2014-07-07	ENCODE				1							ENCFF080XQT, ENCFF380JLB, ENCFF980CFV	6748695	ENCODE Processing Pipeline	dfdfe4f30e1f0cbf721b7e1793fa82c0		https://www.encodeproject.org/files/ENCFF900WDP/@@download/ENCFF900WDP.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption	experiment not submitted to GEO	poor library complexity, severe bottlenecking	
ENCFF927YRG	bed narrowPeak	peaks	ENCSR000BKQ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ETS1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF006UXO, ENCFF750MIM	4623186	ENCODE Processing Pipeline	da847f33f2805400c0bc537204cf5d79		https://www.encodeproject.org/files/ENCFF927YRG/@@download/ENCFF927YRG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample	control insufficient read depth	
ENCFF545FAT	bed narrowPeak	peaks	ENCSR000EHA	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				TBP-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF495MQP, ENCFF498SAC, ENCFF732TLR	5201909	ENCODE Processing Pipeline	f778df33398231bdd16946eadc00a734		https://www.encodeproject.org/files/ENCFF545FAT/@@download/ENCFF545FAT.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF253DCO	bed narrowPeak	peaks	ENCSR000EFT	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GATA1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF498SAC, ENCFF732TLR, ENCFF942NUX	4597558	ENCODE Processing Pipeline	83ffe6ced3b82d7ee59333110e1fea74		https://www.encodeproject.org/files/ENCFF253DCO/@@download/ENCFF253DCO.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF276DPB	bed narrowPeak	peaks	ENCSR000BLO	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GABPA-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF538JCZ, ENCFF750MIM	2554768	ENCODE Processing Pipeline	713c6ee524388deaf65c14f0ec838440		https://www.encodeproject.org/files/ENCFF276DPB/@@download/ENCFF276DPB.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, moderate library complexity	biological replicates with identical biosample	control insufficient read depth, insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF761ORT	bed narrowPeak	peaks	ENCSR696LQU	ChIP-seq	UBERON:0000992	ovary	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF834AOC	6235660	ENCODE Processing Pipeline	6aade674d7b187f48fb318dd92c2767c		https://www.encodeproject.org/files/ENCFF761ORT/@@download/ENCFF761ORT.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF872LIM	bed narrowPeak	peaks	ENCSR770IWO	ChIP-seq	UBERON:0002369	adrenal gland	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF570ZSH, ENCFF891NAK	6375548	ENCODE Processing Pipeline	098ff0d0ac500604d6bb35c8ef775399		https://www.encodeproject.org/files/ENCFF872LIM/@@download/ENCFF872LIM.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF918SQN	bed narrowPeak	peaks	ENCSR000BJT	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF579FIX, ENCFF686SSI	4127101	ENCODE Processing Pipeline	e703e83a6128f3b4ba73324c275be6e3		https://www.encodeproject.org/files/ENCFF918SQN/@@download/ENCFF918SQN.bed.gz	hg19			released	control low read depth, low read length, low read depth	biological replicates with identical biosample	insufficient read depth	
ENCFF507ZLI	bed narrowPeak	peaks	ENCSR000EFZ	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				UBTF-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF002THP, ENCFF498SAC, ENCFF732TLR	5173454	ENCODE Processing Pipeline	8f6f2b56cbac1449b28960c1e518cc38		https://www.encodeproject.org/files/ENCFF507ZLI/@@download/ENCFF507ZLI.bed.gz	hg19			released	low read length, low read depth, moderate library complexity, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF004UUL	bed narrowPeak	peaks	ENCSR000ANS	ChIP-seq	CL:0002372	myotube	in vitro differentiated cells	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF276SUL, ENCFF559IIB, ENCFF900ZEG	3342896	ENCODE Processing Pipeline	bad9ba2a20281ae90ef47badcf4affeb		https://www.encodeproject.org/files/ENCFF004UUL/@@download/ENCFF004UUL.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	NTR biosample	insufficient read depth	missing control alignments
ENCFF839MBM	bed narrowPeak	peaks	ENCSR000MMZ	ChIP-seq	UBERON:0008952	upper lobe of left lung	tissue	Homo sapiens				EP300-human	DNA		see document		formaldehyde	False	2017-06-15	ENCODE				1							ENCFF944EAM	6340677	ENCODE Processing Pipeline	7d50f66aa8886055b0e47d6c02d2352c		https://www.encodeproject.org/files/ENCFF839MBM/@@download/ENCFF839MBM.bed.gz	hg19			released	antibody characterized with exemption			missing control alignments
ENCFF077KRK	bed narrowPeak	peaks	ENCSR000EGV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				BHLHE40-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF710NTS, ENCFF823NIQ	5501529	ENCODE Processing Pipeline	1e02c94c7e82b16b361f512039fdb43a		https://www.encodeproject.org/files/ENCFF077KRK/@@download/ENCFF077KRK.bed.gz	hg19			released	low read length, inconsistent target of control experiment	duplicate lane review, biological replicates with identical biosample		
ENCFF096GLZ	bed narrowPeak	peaks	ENCSR000DPF	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-01-17	ENCODE				1							ENCFF076ZNH, ENCFF251TYG	1064010	ENCODE Processing Pipeline	baeab40cacbef5a56d321a1785ca47c7		https://www.encodeproject.org/files/ENCFF096GLZ/@@download/ENCFF096GLZ.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, control low read depth, low read depth		poor library complexity, severe bottlenecking	extremely low read depth
ENCFF514HVB	bed narrowPeak	peaks	ENCSR000BSK	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF078LPR, ENCFF436ZGI, ENCFF839BYC	5706459	ENCODE Processing Pipeline	c5c1523860d58e101f935ddd201f7736		https://www.encodeproject.org/files/ENCFF514HVB/@@download/ENCFF514HVB.bed.gz	hg19			released		biological replicates with identical biosample		missing control alignments
ENCFF233XEO	bed narrowPeak	peaks	ENCSR000AQG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				HDAC2-human	DNA		see document	see document		False	2012-03-06	ENCODE				1							ENCFF574XYY, ENCFF979MVK	4369803	ENCODE Processing Pipeline	c93be7987719bacc0e44acae6a84097b		https://www.encodeproject.org/files/ENCFF233XEO/@@download/ENCFF233XEO.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, low read length, mild to moderate bottlenecking, inconsistent platforms, control low read depth, low read depth			
ENCFF123SPG	bed narrowPeak	peaks	ENCSR000ECK	ChIP-seq	EFO:0002791	HeLa-S3	cell line	Homo sapiens				MAFK-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF405VXR, ENCFF469INX	5685175	ENCODE Processing Pipeline	8d86ae5c11dc6fe954a9bda697b56b7e		https://www.encodeproject.org/files/ENCFF123SPG/@@download/ENCFF123SPG.bed.gz	hg19			released	low read length, borderline replicate concordance, low read depth, inconsistent target of control experiment	biological replicates with identical biosample, inconsistent mapped reads lengths		
ENCFF499CWW	bed narrowPeak	peaks	ENCSR000AUZ	ChIP-seq	CL:0000236	B cell	primary cell	Homo sapiens				EZH2-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF248YTS, ENCFF724KQS	5207894	ENCODE Processing Pipeline	b923450f64e0d248502de4512fd8b528		https://www.encodeproject.org/files/ENCFF499CWW/@@download/ENCFF499CWW.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity		poor library complexity, severe bottlenecking	extremely low read depth
ENCFF670PLH	bed narrowPeak	peaks	ENCSR000BUW	ChIP-seq	EFO:0002793	HL-60	cell line	Homo sapiens				SPI1-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF407WPP, ENCFF822WIL, ENCFF880DIZ	5580846	ENCODE Processing Pipeline	808c31c7fb40747e64618122e7ca6bbc		https://www.encodeproject.org/files/ENCFF670PLH/@@download/ENCFF670PLH.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth	biological replicates with identical biosample		
ENCFF003CWL	bed narrowPeak	peaks	ENCSR000EEC	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MAFF-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF848DMA	5252403	ENCODE Processing Pipeline	137fd7e28a92f48cf8613e70f19d9350		https://www.encodeproject.org/files/ENCFF003CWL/@@download/ENCFF003CWL.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF716IBZ	bed narrowPeak	peaks	ENCSR000EEI	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				JUND-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF371NBL	5109965	ENCODE Processing Pipeline	0499c1bd1214452c6e422672dbb66a18		https://www.encodeproject.org/files/ENCFF716IBZ/@@download/ENCFF716IBZ.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF359EWI	bed narrowPeak	peaks	ENCSR000DXQ	ChIP-seq	EFO:0003072	SK-N-SH	cell line	Homo sapiens	all-trans-retinoic acid	6 μM	48 hour	CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF328BRW, ENCFF998ZWT	2661982	ENCODE Processing Pipeline	0c8d8b15f79694ccea73ca291bcbd773		https://www.encodeproject.org/files/ENCFF359EWI/@@download/ENCFF359EWI.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth	
ENCFF075ZQI	bed narrowPeak	peaks	ENCSR000BPE	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	ethanol	0.02 percent	1 hour	SP1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF309RPK, ENCFF864UEQ	6285587	ENCODE Processing Pipeline	338ed28b922bdea7611995424e4cd1af		https://www.encodeproject.org/files/ENCFF075ZQI/@@download/ENCFF075ZQI.bed.gz	hg19			released	low read length	biological replicates with identical biosample		
ENCFF307TQZ	bed narrowPeak	peaks	ENCSR000BNV	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				MEF2A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF700OGN, ENCFF750MIM	128509	ENCODE Processing Pipeline	29ba80eee0d97892a5028bf68567ac0b		https://www.encodeproject.org/files/ENCFF307TQZ/@@download/ENCFF307TQZ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	missing control alignments
ENCFF380YEP	bed narrowPeak	peaks	ENCSR000BKK	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				EP300-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF060WKJ, ENCFF356DXM	3832278	ENCODE Processing Pipeline	3c2e59e388ffc27591fefb08cbf09b45		https://www.encodeproject.org/files/ENCFF380YEP/@@download/ENCFF380YEP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance	biological replicates with identical biosample		
ENCFF953BDX	bed narrowPeak	peaks	ENCSR000BPX	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	100 nM	1 hour	FOXA1-human	DNA		see document	see document		False	2012-02-29	ENCODE				1							ENCFF288LFN, ENCFF336HSE, ENCFF879AJU	4385160	ENCODE Processing Pipeline	8bf42a4751560997619f11832667ba1f		https://www.encodeproject.org/files/ENCFF953BDX/@@download/ENCFF953BDX.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF090XCI	bed narrowPeak	peaks	ENCSR000DUU	ChIP-seq	CL:0002555	fibroblast of mammary gland	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF318TMO, ENCFF628PKL	2393589	ENCODE Processing Pipeline	1e2e1827152f9524fa34f6dc40eb8e63		https://www.encodeproject.org/files/ENCFF090XCI/@@download/ENCFF090XCI.bed.gz	hg19			released	low read length, low read depth, inconsistent platforms		control insufficient read depth, insufficient read depth	
ENCFF784FBR	bed narrowPeak	peaks	ENCSR000EUN	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				ZNF274-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF123NKL, ENCFF509ANO	1025365	ENCODE Processing Pipeline	9c425ec8d5a70be9f50709f48982add5		https://www.encodeproject.org/files/ENCFF784FBR/@@download/ENCFF784FBR.bed.gz	hg19			released	low read length, borderline replicate concordance	biological replicates with identical biosample		extremely low read depth
ENCFF412YTK	bed narrowPeak	peaks	ENCSR000BME	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ZBTB7A-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF750MIM, ENCFF859KGS	4043931	ENCODE Processing Pipeline	d6b3c6ecd2f902f4c5f59525622b62da		https://www.encodeproject.org/files/ENCFF412YTK/@@download/ENCFF412YTK.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	
ENCFF061TTI	bed narrowPeak	peaks	ENCSR000EWG	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				GATA2-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF051ZZR, ENCFF990JRT	4134004	ENCODE Processing Pipeline	460d8efe582bd8ac3d839aaaa1cb871e		https://www.encodeproject.org/files/ENCFF061TTI/@@download/ENCFF061TTI.bed.gz	hg19			released		biological replicates with identical biosample	insufficient read depth, insufficient replicate concordance, insufficient read length	
ENCFF485ZSI	bed narrowPeak	peaks	ENCSR000AUV	ChIP-seq	CL:0000236	B cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF248YTS, ENCFF520GVQ	5468945	ENCODE Processing Pipeline	e8a1f5c43574d77028d65bead41854c9		https://www.encodeproject.org/files/ENCFF485ZSI/@@download/ENCFF485ZSI.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	missing raw data in replicate		missing control alignments
ENCFF097DFJ	bed narrowPeak	peaks	ENCSR000ATN	ChIP-seq	CL:0001054	CD14-positive monocyte	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF572RFU, ENCFF730IJS, ENCFF853XVP	2633014	ENCODE Processing Pipeline	ac010eb0b01e37f4288fdbe332b30fa6		https://www.encodeproject.org/files/ENCFF097DFJ/@@download/ENCFF097DFJ.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity		insufficient read depth	
ENCFF480FHG	bed narrowPeak	peaks	ENCSR000AUQ	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				EP300-human	DNA		see document	see document		False	2012-08-06	ENCODE				1							ENCFF727XHW, ENCFF832OFG	4055087	ENCODE Processing Pipeline	9b475cd500f3586135d391fc2a278313		https://www.encodeproject.org/files/ENCFF480FHG/@@download/ENCFF480FHG.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, inconsistent platforms			
ENCFF649WCV	bed narrowPeak	peaks	ENCSR981CID	ChIP-seq	UBERON:0000473	testis	tissue	Homo sapiens				CTCF-human	DNA					False	2017-01-30	ENCODE				1							ENCFF029BUR, ENCFF576YJV	5941629	ENCODE Processing Pipeline	030c1c00e909666d29987d7f17faa26c		https://www.encodeproject.org/files/ENCFF649WCV/@@download/ENCFF649WCV.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption			
ENCFF444ZJW	bed narrowPeak	peaks	ENCSR000DVH	ChIP-seq	CL:0002518	kidney epithelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF213ZXO, ENCFF370MLP	2184424	ENCODE Processing Pipeline	e1c31d15c3d4b204e1c3dbc6c6351d53		https://www.encodeproject.org/files/ENCFF444ZJW/@@download/ENCFF444ZJW.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth, poor library complexity, severe bottlenecking	
ENCFF919QSI	bed narrowPeak	peaks	ENCSR000EDT	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				BHLHE40-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF107SKX, ENCFF256CVD	5078437	ENCODE Processing Pipeline	4c01119470290b7b1b4610347ffd4918		https://www.encodeproject.org/files/ENCFF919QSI/@@download/ENCFF919QSI.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	duplicate lane review, biological replicates with identical biosample		
ENCFF237NQY	bed narrowPeak	peaks	ENCSR493APD	ChIP-seq	UBERON:0000992	ovary	tissue	Homo sapiens				CTCF-human	DNA					False	2016-12-13	ENCODE				1							ENCFF792NXA, ENCFF947XNG	6388761	ENCODE Processing Pipeline	47941d70f95744de2f455d8fed7735ef		https://www.encodeproject.org/files/ENCFF237NQY/@@download/ENCFF237NQY.bed.gz	hg19			released	antibody characterized with exemption			
ENCFF579SVE	bed narrowPeak	peaks	ENCSR000ANO	ChIP-seq	CL:0002553	fibroblast of lung	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-02-10	ENCODE				1							ENCFF208SHP, ENCFF211UGH, ENCFF250VFW	3874222	ENCODE Processing Pipeline	31eaaf5802f05cec71cf2321a2ddbcfb		https://www.encodeproject.org/files/ENCFF579SVE/@@download/ENCFF579SVE.bed.gz	hg19			released	control low read depth, low read length, low read depth, mild to moderate bottlenecking, borderline replicate concordance		poor library complexity, severe bottlenecking	extremely low read depth, missing control alignments
ENCFF453SOO	bed narrowPeak	peaks	ENCSR000DXI	ChIP-seq	CL:0002328	bronchial epithelial cell	primary cell	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF727MWW, ENCFF863LNN	1882219	ENCODE Processing Pipeline	9c8669e6872848a21b9b0c96662e1955		https://www.encodeproject.org/files/ENCFF453SOO/@@download/ENCFF453SOO.bed.gz	hg19			released	control low read depth, low read length, mild to moderate bottlenecking, inconsistent platforms, moderate library complexity		insufficient read depth, severe bottlenecking	extremely low read depth
ENCFF185AVK	bed narrowPeak	peaks	ENCSR000BHF	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	50 nM	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF492RDK, ENCFF500MOX	4595006	ENCODE Processing Pipeline	a9bb763fae506572bd205f2466ddda1e		https://www.encodeproject.org/files/ENCFF185AVK/@@download/ENCFF185AVK.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample		
ENCFF121QUN	bed narrowPeak	peaks	ENCSR000DPM	ChIP-seq	EFO:0006270	AG04450	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2011-03-17	ENCODE				1							ENCFF316KUR, ENCFF864XXG	4166313	ENCODE Processing Pipeline	52a2e3ee1050673d3f3449527d0d40ad		https://www.encodeproject.org/files/ENCFF121QUN/@@download/ENCFF121QUN.bed.gz	hg19			released	control low read depth, low read length, low read depth, inconsistent platforms			
ENCFF671DTY	bed narrowPeak	peaks	ENCSR000EBS	ChIP-seq	EFO:0003042	H1-hESC	stem cell	Homo sapiens				MAFK-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF590SUW, ENCFF599MVB	4652035	ENCODE Processing Pipeline	369e2d41cec1c265a2179f6de18d7515		https://www.encodeproject.org/files/ENCFF671DTY/@@download/ENCFF671DTY.bed.gz	hg19			released	file validation error, low read length, mild to moderate bottlenecking, low read depth, inconsistent target of control experiment	biological replicates with identical biosample, mismatched file status		
ENCFF601TVP	bed narrowPeak	peaks	ENCSR000EXZ	ChIP-seq	EFO:0002717	SH-SY5Y	cell line	Homo sapiens				GATA3-human	DNA		see document	see document		False	2011-10-29	ENCODE				1							ENCFF610BER, ENCFF673XHO	5912551	ENCODE Processing Pipeline	ea1611741594dfc77aba448abcf46d25		https://www.encodeproject.org/files/ENCFF601TVP/@@download/ENCFF601TVP.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, moderate library complexity	biological replicates with identical biosample		
ENCFF526YXC	bed narrowPeak	peaks	ENCSR000BKY	ChIP-seq	EFO:0001247	T47D	cell line	Homo sapiens	dimethyl sulfoxide	0.02 percent	1 hour	FOXA1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF185XXN, ENCFF960JYT	4813020	ENCODE Processing Pipeline	de933f76118b9bf70b5e7569dfc291c9		https://www.encodeproject.org/files/ENCFF526YXC/@@download/ENCFF526YXC.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF969CUT	bed narrowPeak	peaks	ENCSR000EDN	ChIP-seq	EFO:0001187	HepG2	cell line	Homo sapiens				MAZ-human	DNA		see document	see document		False	2012-05-14	ENCODE				1							ENCFF107SKX, ENCFF693CAN	5328984	ENCODE Processing Pipeline	c37c04dcf9abd8d974cc46f824cba538		https://www.encodeproject.org/files/ENCFF969CUT/@@download/ENCFF969CUT.bed.gz	hg19			released	borderline replicate concordance, moderate library complexity, inconsistent target of control experiment, low read length, mild to moderate bottlenecking, low read depth	biological replicates with identical biosample		
ENCFF253OOR	bed narrowPeak	peaks	ENCSR000DYR	ChIP-seq	EFO:0002784	GM12878	cell line	Homo sapiens				CUX1-human	DNA		see document	see document		False	2012-08-20	ENCODE				1							ENCFF110OHA, ENCFF545DZO, ENCFF546JQP	186581	ENCODE Processing Pipeline	c051a2082c2cebef6f097c085ba97220		https://www.encodeproject.org/files/ENCFF253OOR/@@download/ENCFF253OOR.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient replicate concordance	
ENCFF021NMZ	bed narrowPeak	peaks	ENCSR000BSE	ChIP-seq	EFO:0002824	HCT116	cell line	Homo sapiens				CTCF-human	DNA		see document	see document		False	2012-09-10	ENCODE				1							ENCFF296CPJ, ENCFF831FMU	2565552	ENCODE Processing Pipeline	98f67bb8cf3d192bc3750f98903272a1		https://www.encodeproject.org/files/ENCFF021NMZ/@@download/ENCFF021NMZ.bed.gz	hg19			released	mild to moderate bottlenecking, borderline replicate concordance, low read depth, moderate library complexity	biological replicates with identical biosample	insufficient read depth	missing control alignments
ENCFF033RSK	bed narrowPeak	peaks	ENCSR000BJR	ChIP-seq	EFO:0001086	A549	cell line	Homo sapiens	dexamethasone	100 nM	1 hour	NR3C1-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF579FIX, ENCFF642SKG, ENCFF901AZD	3506599	ENCODE Processing Pipeline	d1ed86c6b4b54e36d8892c9e10e5d188		https://www.encodeproject.org/files/ENCFF033RSK/@@download/ENCFF033RSK.bed.gz	hg19			released	low read length, low read depth, inconsistent target of control experiment	biological replicates with identical biosample	insufficient read depth	
ENCFF015HEH	bed narrowPeak	peaks	ENCSR000BNU	ChIP-seq	EFO:0002067	K562	cell line	Homo sapiens				ATF3-human	DNA		see document	see document		False	2011-07-18	ENCODE				1							ENCFF747HGM, ENCFF750MIM	4316404	ENCODE Processing Pipeline	8207f76f290825f56931668fde6dc792		https://www.encodeproject.org/files/ENCFF015HEH/@@download/ENCFF015HEH.bed.gz	hg19			released	low read length, mild to moderate bottlenecking, low read depth, borderline replicate concordance, moderate library complexity	biological replicates with identical biosample	control insufficient read depth	
ENCFF354MGW	bed narrowPeak	peaks	ENCSR798NVH	ChIP-seq	UBERON:0000995	uterus	tissue	Homo sapiens				CTCF-human	DNA					False	2016-11-07	ENCODE				1							ENCFF123STP, ENCFF584NWF	6501029	ENCODE Processing Pipeline	6b428241ad0dc646a3bfb9cd576c1e36		https://www.encodeproject.org/files/ENCFF354MGW/@@download/ENCFF354MGW.bed.gz	hg19			released	mild to moderate bottlenecking, moderate library complexity, antibody characterized with exemption