============================================== 2018-06-06 18:43:45 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_FRT82B_cic_wingdisc_ChIP-nexus_2-GSM2545312/aligned.25mers.unique.bam --out Dme_FRT82B_cic_wingdisc_ChIP-nexus_2-GSM2545312/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:44:20 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_FRT82B_cic_wingdisc_ChIP-nexus_1-GSM2545311/aligned.25mers.unique.bam --out Dme_FRT82B_cic_wingdisc_ChIP-nexus_1-GSM2545311/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:45:08 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_FRT82B_SD_wingdisc_ChIP-nexus_2-GSM2545314/aligned.25mers.unique.bam --out Dme_FRT82B_SD_wingdisc_ChIP-nexus_2-GSM2545314/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:45:20 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_FRT82B_SD_wingdisc_ChIP-nexus_1-GSM2545313/aligned.25mers.unique.bam --out Dme_FRT82B_SD_wingdisc_ChIP-nexus_1-GSM2545313/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:46:05 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wtscic_cic_wingdisc_ChIP-nexus_1-GSM2545315/aligned.25mers.unique.bam --out Dme_wtscic_cic_wingdisc_ChIP-nexus_1-GSM2545315/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:46:09 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wtscic_cic_wingdisc_ChIP-nexus_1-GSM2545315/aligned.25mers.unique.bam --out Dme_wtscic_cic_wingdisc_ChIP-nexus_1-GSM2545315/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:50:07 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wts_SD_wingdisc_ChIP-nexus_1-GSM2545322/aligned.25mers.unique.bam --out Dme_wts_SD_wingdisc_ChIP-nexus_1-GSM2545322/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:50:34 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wts_cic_wingdisc_ChIP-nexus_1-GSM2545320/aligned.25mers.unique.bam --out Dme_wts_cic_wingdisc_ChIP-nexus_1-GSM2545320/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:50:44 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wtscic_SD_wingdisc_ChIP-nexus_2-GSM2545318/aligned.25mers.unique.bam --out Dme_wtscic_SD_wingdisc_ChIP-nexus_2-GSM2545318/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:50:46 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wts_cic_wingdisc_ChIP-nexus_2-GSM2545321/aligned.25mers.unique.bam --out Dme_wts_cic_wingdisc_ChIP-nexus_2-GSM2545321/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:51:10 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wtscic_SD_wingdisc_ChIP-nexus_1-GSM2545317/aligned.25mers.unique.bam --out Dme_wtscic_SD_wingdisc_ChIP-nexus_1-GSM2545317/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:51:46 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wtscic_SD_wingdisc_ChIP-nexus_3-GSM2545319/aligned.25mers.unique.bam --out Dme_wtscic_SD_wingdisc_ChIP-nexus_3-GSM2545319/aligned.25mers.unique.GPS ============================================== 2018-06-06 18:51:48 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Dme_wts_SD_wingdisc_ChIP-nexus_2-GSM2545323/aligned.25mers.unique.bam --out Dme_wts_SD_wingdisc_ChIP-nexus_2-GSM2545323/aligned.25mers.unique.GPS Original read count stats: _IP Bases: 15116318 HitCounts: 1.8325366E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 61 reads. The genome is segmented into 211963 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 161 Insignificant: 9 Filtered: 27 Finish binding event prediction: 4.9m Running with 4 threads ... --------------------------- Events discovered Significant: 161 Insignificant: 9 Filtered: 27 Finish binding event prediction: 3.5m Original read count stats: _IP Bases: 17043256 HitCounts: 2.4083922E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 69 reads. The genome is segmented into 213520 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 16859838 HitCounts: 2.1516178E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 76 reads. The genome is segmented into 211773 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 229 Insignificant: 8 Filtered: 17 Finish binding event prediction: 5.2m Running with 4 threads ... --------------------------- Events discovered Significant: 229 Insignificant: 8 Filtered: 17 Finish binding event prediction: 3.7m --------------------------- Events discovered Significant: 4930 Insignificant: 18 Filtered: 1123 Finish binding event prediction: 7.4m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 12528 Insignificant: 1681 Filtered: 8 Finish binding event prediction: 4.9m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 21027090 HitCounts: 3.6021037E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 112 reads. The genome is segmented into 209741 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 21134211 HitCounts: 3.1619009E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 102 reads. The genome is segmented into 211659 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 6760 Insignificant: 56 Filtered: 1566 Finish binding event prediction: 8.4m Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 20732264 HitCounts: 2.6263008E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 81 reads. The genome is segmented into 211713 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 5785 Insignificant: 26 Filtered: 1261 Finish binding event prediction: 8.5m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 199 Insignificant: 6 Filtered: 19 Finish binding event prediction: 6.7m Running with 4 threads ... --------------------------- Events discovered Significant: 19568 Insignificant: 3169 Filtered: 21 Finish binding event prediction: 7.7m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 14129 Insignificant: 1747 Filtered: 9 Finish binding event prediction: 6.4m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 199 Insignificant: 6 Filtered: 19 Finish binding event prediction: 5.1m Original read count stats: _IP Bases: 23304999 HitCounts: 3.1369128E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 93 reads. The genome is segmented into 209413 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 378 Insignificant: 6 Filtered: 96 Finish binding event prediction: 6.4m Running with 4 threads ... --------------------------- Events discovered Significant: 378 Insignificant: 6 Filtered: 96 Finish binding event prediction: 5.6m Original read count stats: _IP Bases: 27364621 HitCounts: 3.8868312E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 126 reads. The genome is segmented into 208863 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 5758 Insignificant: 38 Filtered: 1347 Finish binding event prediction: 10.5m Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 30270611 HitCounts: 4.7793232E7 Original read count stats: _IP Bases: 28672930 HitCounts: 4.4526533E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 149 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 139 reads. The genome is segmented into 207868 regions for analysis. Running with 4 threads ... The genome is segmented into 209120 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 14369 Insignificant: 2076 Filtered: 10 Finish binding event prediction: 8.7m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 30854446 HitCounts: 4.3946829E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 138 reads. The genome is segmented into 210538 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 5134 Insignificant: 31 Filtered: 1285 Finish binding event prediction: 10.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6120 Insignificant: 33 Filtered: 1443 Finish binding event prediction: 10.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 14877 Insignificant: 2100 Filtered: 8 Finish binding event prediction: 7.9m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 14896 Insignificant: 2409 Filtered: 17 Finish binding event prediction: 8.5m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 4455 Insignificant: 14 Filtered: 1110 Finish binding event prediction: 10.9m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 11168 Insignificant: 1180 Filtered: 5 Finish binding event prediction: 7.9m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 39072824 HitCounts: 5.2980183E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 159 reads. The genome is segmented into 209562 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 39072824 HitCounts: 5.2980183E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 159 reads. The genome is segmented into 209562 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 158 Insignificant: 2 Filtered: 25 Finish binding event prediction: 15.6m Running with 4 threads ... --------------------------- Events discovered Significant: 158 Insignificant: 2 Filtered: 25 Finish binding event prediction: 15.9m Running with 4 threads ... --------------------------- Events discovered Significant: 158 Insignificant: 2 Filtered: 25 Finish binding event prediction: 14.1m --------------------------- Events discovered Significant: 158 Insignificant: 2 Filtered: 25 Finish binding event prediction: 13.8m