INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-MHS-Rep3-GSM2601074/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 0.824986219406 s
Creating peak regions... Creating peak regions took 0.128782987595 s
Estimating background... Estimating background took 0.121173143387 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.36378312111 s
Creating peak regions... Creating peak regions took 0.2371571064 s
Estimating background... Estimating background took 0.11062002182 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 0.968593835831 s
Creating peak regions... Creating peak regions took 0.14976811409 s
Estimating background... Estimating background took 0.114464044571 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 2.1299290657 s
Creating peak regions... Creating peak regions took 0.375767946243 s
Estimating background... Estimating background took 0.110781908035 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 0.664255857468 s
Creating peak regions... Creating peak regions took 0.142168045044 s
Estimating background... Estimating background took 0.109917879105 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0379750728607 s
Creating peak regions... Creating peak regions took 0.0202341079712 s
Estimating background... Estimating background took 0.112784147263 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.46029520035 s
Creating peak regions... Creating peak regions took 0.169691085815 s
Estimating background... Estimating background took 0.109470844269 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 0.889148950577 s
Creating peak regions... Creating peak regions took 0.124356985092 s
Estimating background... Estimating background took 0.111058950424 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 2.87790894508 s
Creating peak regions... Creating peak regions took 0.302325963974 s
Estimating background... Estimating background took 0.11324596405 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.2128880024 s
Creating peak regions... Creating peak regions took 0.23418879509 s
Estimating background... Estimating background took 0.112302064896 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.18294882774 s
Creating peak regions... Creating peak regions took 0.189103126526 s
Estimating background... Estimating background took 0.109544038773 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.38377404213 s
Creating peak regions... Creating peak regions took 0.17221903801 s
Estimating background... Estimating background took 0.109956979752 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.99228310585 s
Creating peak regions... Creating peak regions took 0.270138978958 s
Estimating background... Estimating background took 0.212989091873 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.93291592598 s
Creating peak regions... Creating peak regions took 0.262531995773 s
Estimating background... Estimating background took 0.116287231445 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 2.12448000908 s
Creating peak regions... Creating peak regions took 0.233496904373 s
Estimating background... Estimating background took 0.113511800766 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 2.73347401619 s
Creating peak regions... Creating peak regions took 0.430129051208 s
Estimating background... Estimating background took 0.114952087402 s


Processing Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam
Reading in data... Reading data took 1.95000004768 s
Creating peak regions... Creating peak regions took 0.26979804039 s
Estimating background... Estimating background took 0.115083932877 s