INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-MHS-Rep2-GSM2601073/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.253480195999 s
Creating peak regions... Creating peak regions took 0.242580890656 s
Estimating background... Estimating background took 1.19865608215 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.227213859558 s
Creating peak regions... Creating peak regions took 0.495854139328 s
Estimating background... Estimating background took 2.6269068718 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.170000076294 s
Creating peak regions... Creating peak regions took 0.324286937714 s
Estimating background... Estimating background took 1.42274093628 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.738821029663 s
Creating peak regions... Creating peak regions took 1.01169013977 s
Estimating background... Estimating background took 4.24732899666 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.193146944046 s
Creating peak regions... Creating peak regions took 0.382154941559 s
Estimating background... Estimating background took 1.72755813599 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.173239946365 s
Creating peak regions... Creating peak regions took 0.194334983826 s
Estimating background... Estimating background took 1.12892699242 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.198246002197 s
Creating peak regions... Creating peak regions took 0.349040985107 s
Estimating background... Estimating background took 2.14248490334 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.121289014816 s
Creating peak regions... Creating peak regions took 0.270200014114 s
Estimating background... Estimating background took 1.12143182755 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.612027168274 s
Creating peak regions... Creating peak regions took 0.8001101017 s
Estimating background... Estimating background took 3.76578998566 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.249777078629 s
Creating peak regions... Creating peak regions took 0.530201196671 s
Estimating background... Estimating background took 2.16507196426 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.179039955139 s
Creating peak regions... Creating peak regions took 0.435528039932 s
Estimating background... Estimating background took 2.53213906288 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.313498020172 s
Creating peak regions... Creating peak regions took 0.618000984192 s
Estimating background... Estimating background took 2.32648611069 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.580112934113 s
Creating peak regions... Creating peak regions took 0.921908140182 s
Estimating background... Estimating background took 3.36131596565 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.415303945541 s
Creating peak regions... Creating peak regions took 0.786427974701 s
Estimating background... Estimating background took 2.93904399872 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.381561040878 s
Creating peak regions... Creating peak regions took 0.88175702095 s
Estimating background... Estimating background took 2.45507693291 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.694526195526 s
Creating peak regions... Creating peak regions took 0.771806001663 s
Estimating background... Estimating background took 3.23539495468 s


Processing Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam
Reading in data... Reading data took 0.20783495903 s
Creating peak regions... Creating peak regions took 0.533285140991 s
Estimating background... Estimating background took 2.87202787399 s