INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-MHS-Rep1-GSM2601072/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.328310966492 s
Creating peak regions... Creating peak regions took 0.207855939865 s
Estimating background... Estimating background took 0.242645025253 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.663658857346 s
Creating peak regions... Creating peak regions took 0.351918935776 s
Estimating background... Estimating background took 0.315195083618 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.353894948959 s
Creating peak regions... Creating peak regions took 0.204243898392 s
Estimating background... Estimating background took 0.900680780411 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 1.20728707314 s
Creating peak regions... Creating peak regions took 0.817832946777 s
Estimating background... Estimating background took 0.520947933197 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.230610847473 s
Creating peak regions... Creating peak regions took 0.208071947098 s
Estimating background... Estimating background took 0.213084936142 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0228431224823 s
Creating peak regions... Creating peak regions took 0.0532031059265 s
Estimating background... Estimating background took 0.110208034515 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.378690958023 s
Creating peak regions... Creating peak regions took 0.199064016342 s
Estimating background... Estimating background took 0.220324993134 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.212924003601 s
Creating peak regions... Creating peak regions took 0.108438014984 s
Estimating background... Estimating background took 0.110326051712 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.689488887787 s
Creating peak regions... Creating peak regions took 0.654098033905 s
Estimating background... Estimating background took 0.434581041336 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.265912771225 s
Creating peak regions... Creating peak regions took 0.186398029327 s
Estimating background... Estimating background took 0.111464977264 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.705900907516 s
Creating peak regions... Creating peak regions took 0.334557056427 s
Estimating background... Estimating background took 0.316084861755 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.296158790588 s
Creating peak regions... Creating peak regions took 0.216536045074 s
Estimating background... Estimating background took 0.211845159531 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.583474159241 s
Creating peak regions... Creating peak regions took 0.360163927078 s
Estimating background... Estimating background took 0.526000022888 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.728960990906 s
Creating peak regions... Creating peak regions took 0.384393930435 s
Estimating background... Estimating background took 0.417640924454 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.619801044464 s
Creating peak regions... Creating peak regions took 0.339326858521 s
Estimating background... Estimating background took 0.316373109818 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.986577033997 s
Creating peak regions... Creating peak regions took 0.436701059341 s
Estimating background... Estimating background took 0.417863845825 s


Processing Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam
Reading in data... Reading data took 0.53139591217 s
Creating peak regions... Creating peak regions took 0.325777053833 s
Estimating background... Estimating background took 0.415436029434 s