INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS9-Rep1-GSM2601081/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.709682941437 s
Creating peak regions... Creating peak regions took 0.23458981514 s
Estimating background... Estimating background took 0.124308824539 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.971330881119 s
Creating peak regions... Creating peak regions took 0.2336769104 s
Estimating background... Estimating background took 0.111350059509 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.397852182388 s
Creating peak regions... Creating peak regions took 0.104022979736 s
Estimating background... Estimating background took 0.116569042206 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.93050408363 s
Creating peak regions... Creating peak regions took 0.527865171432 s
Estimating background... Estimating background took 0.110090017319 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.510643959045 s
Creating peak regions... Creating peak regions took 0.134825944901 s
Estimating background... Estimating background took 0.111393928528 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0590789318085 s
Creating peak regions... Creating peak regions took 0.020809173584 s
Estimating background... Estimating background took 0.109487056732 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.59268283844 s
Creating peak regions... Creating peak regions took 0.155241012573 s
Estimating background... Estimating background took 0.107614040375 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.539322137833 s
Creating peak regions... Creating peak regions took 0.125099182129 s
Estimating background... Estimating background took 0.111404895782 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.31659507751 s
Creating peak regions... Creating peak regions took 0.287245035172 s
Estimating background... Estimating background took 0.113008975983 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.608212947845 s
Creating peak regions... Creating peak regions took 0.142957925797 s
Estimating background... Estimating background took 0.108957052231 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.751488924026 s
Creating peak regions... Creating peak regions took 0.184313058853 s
Estimating background... Estimating background took 0.110099077225 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.6622569561 s
Creating peak regions... Creating peak regions took 0.173921108246 s
Estimating background... Estimating background took 0.11003112793 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.29704499245 s
Creating peak regions... Creating peak regions took 0.270114183426 s
Estimating background... Estimating background took 0.212108850479 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.51471304893 s
Creating peak regions... Creating peak regions took 0.454742193222 s
Estimating background... Estimating background took 0.112042188644 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.29103899002 s
Creating peak regions... Creating peak regions took 0.2351770401 s
Estimating background... Estimating background took 0.110841035843 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 1.06343913078 s
Creating peak regions... Creating peak regions took 0.266502141953 s
Estimating background... Estimating background took 0.115779161453 s


Processing Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam
Reading in data... Reading data took 0.915999889374 s
Creating peak regions... Creating peak regions took 0.238368988037 s
Estimating background... Estimating background took 0.115797996521 s