INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS6-Rep3-GSM2601080/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.598145961761 s
Creating peak regions... Creating peak regions took 0.117305994034 s
Estimating background... Estimating background took 0.125988960266 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.829571962357 s
Creating peak regions... Creating peak regions took 0.270998001099 s
Estimating background... Estimating background took 0.111996889114 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.253717899323 s
Creating peak regions... Creating peak regions took 0.0893411636353 s
Estimating background... Estimating background took 0.108132123947 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 1.77038216591 s
Creating peak regions... Creating peak regions took 0.434984922409 s
Estimating background... Estimating background took 0.110094070435 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.50680398941 s
Creating peak regions... Creating peak regions took 0.176859855652 s
Estimating background... Estimating background took 0.111191034317 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0267429351807 s
Creating peak regions... Creating peak regions took 0.024472951889 s
Estimating background... Estimating background took 0.122238874435 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.611982107162 s
Creating peak regions... Creating peak regions took 0.16806602478 s
Estimating background... Estimating background took 0.2114610672 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.186532020569 s
Creating peak regions... Creating peak regions took 0.0741429328918 s
Estimating background... Estimating background took 0.115303993225 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.841231107712 s
Creating peak regions... Creating peak regions took 0.260668992996 s
Estimating background... Estimating background took 0.216676950455 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.556371212006 s
Creating peak regions... Creating peak regions took 0.290818929672 s
Estimating background... Estimating background took 0.112908124924 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.845806837082 s
Creating peak regions... Creating peak regions took 0.271815061569 s
Estimating background... Estimating background took 0.113050937653 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.734580993652 s
Creating peak regions... Creating peak regions took 0.267174959183 s
Estimating background... Estimating background took 0.112737894058 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 1.07436084747 s
Creating peak regions... Creating peak regions took 0.257834911346 s
Estimating background... Estimating background took 0.850857019424 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.989867925644 s
Creating peak regions... Creating peak regions took 0.316141843796 s
Estimating background... Estimating background took 0.112212896347 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.458745956421 s
Creating peak regions... Creating peak regions took 0.226052045822 s
Estimating background... Estimating background took 0.112121105194 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 1.08611989021 s
Creating peak regions... Creating peak regions took 0.330492019653 s
Estimating background... Estimating background took 0.109838008881 s


Processing Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam
Reading in data... Reading data took 0.6516020298 s
Creating peak regions... Creating peak regions took 0.282613992691 s
Estimating background... Estimating background took 0.116774082184 s