INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS6-Rep1-GSM2601078/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.41118311882 s
Creating peak regions... Creating peak regions took 0.100266933441 s
Estimating background... Estimating background took 0.362161874771 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.257363080978 s
Creating peak regions... Creating peak regions took 0.295526027679 s
Estimating background... Estimating background took 0.628123044968 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.139221906662 s
Creating peak regions... Creating peak regions took 0.130236148834 s
Estimating background... Estimating background took 0.324476957321 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.472312927246 s
Creating peak regions... Creating peak regions took 0.50958108902 s
Estimating background... Estimating background took 1.04446983337 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.124221801758 s
Creating peak regions... Creating peak regions took 0.121810913086 s
Estimating background... Estimating background took 0.417801856995 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0175919532776 s
Creating peak regions... Creating peak regions took 0.0684280395508 s
Estimating background... Estimating background took 0.111075878143 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.251315116882 s
Creating peak regions... Creating peak regions took 0.195630073547 s
Estimating background... Estimating background took 0.524218082428 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0978209972382 s
Creating peak regions... Creating peak regions took 0.10104393959 s
Estimating background... Estimating background took 0.316842079163 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.476733207703 s
Creating peak regions... Creating peak regions took 0.380454063416 s
Estimating background... Estimating background took 0.939224004745 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.172867059708 s
Creating peak regions... Creating peak regions took 0.183318853378 s
Estimating background... Estimating background took 0.423533916473 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.238343000412 s
Creating peak regions... Creating peak regions took 0.25263094902 s
Estimating background... Estimating background took 0.628052949905 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.270146131516 s
Creating peak regions... Creating peak regions took 0.239128112793 s
Estimating background... Estimating background took 0.425122022629 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.313746213913 s
Creating peak regions... Creating peak regions took 0.287747859955 s
Estimating background... Estimating background took 0.859781980515 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.343202114105 s
Creating peak regions... Creating peak regions took 0.318139076233 s
Estimating background... Estimating background took 0.736866950989 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.24543595314 s
Creating peak regions... Creating peak regions took 0.302939891815 s
Estimating background... Estimating background took 0.630400180817 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.377879142761 s
Creating peak regions... Creating peak regions took 0.38026881218 s
Estimating background... Estimating background took 0.840737104416 s


Processing Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam
Reading in data... Reading data took 0.317305088043 s
Creating peak regions... Creating peak regions took 0.337162017822 s
Estimating background... Estimating background took 0.832391023636 s