INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS3-Rep3-GSM2601077/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0643999576569 s
Creating peak regions... Creating peak regions took 0.0767920017242 s
Estimating background... Estimating background took 0.170587778091 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0824401378632 s
Creating peak regions... Creating peak regions took 0.221854925156 s
Estimating background... Estimating background took 0.119696855545 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0182840824127 s
Creating peak regions... Creating peak regions took 0.0922651290894 s
Estimating background... Estimating background took 0.119212150574 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0405130386353 s
Creating peak regions... Creating peak regions took 0.379122972488 s
Estimating background... Estimating background took 0.120407104492 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.00892186164856 s
Creating peak regions... Creating peak regions took 0.101943969727 s
Estimating background... Estimating background took 0.120170116425 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... 

Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.032881975174 s
Creating peak regions... Creating peak regions took 0.144572973251 s
Estimating background... Estimating background took 0.122197151184 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0519270896912 s
Creating peak regions... Creating peak regions took 0.0827548503876 s
Estimating background... Estimating background took 0.1209461689 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0334529876709 s
Creating peak regions... Creating peak regions took 0.279442071915 s
Estimating background... Estimating background took 0.121775150299 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0220260620117 s
Creating peak regions... Creating peak regions took 0.151911020279 s
Estimating background... Estimating background took 0.121445894241 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.00981998443604 s
Creating peak regions... Creating peak regions took 0.170027971268 s
Estimating background... Estimating background took 0.123320102692 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0219640731812 s
Creating peak regions... Creating peak regions took 0.17067193985 s
Estimating background... Estimating background took 0.121335029602 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.078241109848 s
Creating peak regions... Creating peak regions took 0.267479896545 s
Estimating background... Estimating background took 0.121709823608 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0441009998322 s
Creating peak regions... Creating peak regions took 0.232918977737 s
Estimating background... Estimating background took 0.121787071228 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0210130214691 s
Creating peak regions... Creating peak regions took 0.185871124268 s
Estimating background... Estimating background took 0.12286400795 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.019593000412 s
Creating peak regions... Creating peak regions took 0.261849164963 s
Estimating background... Estimating background took 0.121996879578 s


Processing Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0323219299316 s
Creating peak regions... Creating peak regions took 0.246005058289 s
Estimating background... Estimating background took 0.121788024902 s