INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS3-Rep2-GSM2601076/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.139533042908 s
Creating peak regions... Creating peak regions took 0.0964941978455 s
Estimating background... Estimating background took 0.236543893814 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0939111709595 s
Creating peak regions... Creating peak regions took 0.234462022781 s
Estimating background... Estimating background took 0.823293924332 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0724198818207 s
Creating peak regions... Creating peak regions took 0.118993997574 s
Estimating background... Estimating background took 0.416047096252 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.273974895477 s
Creating peak regions... Creating peak regions took 0.587620019913 s
Estimating background... Estimating background took 1.64951395988 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.17650604248 s
Creating peak regions... Creating peak regions took 0.192974805832 s
Estimating background... Estimating background took 0.518928050995 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0947999954224 s
Creating peak regions... Creating peak regions took 0.0848829746246 s
Estimating background... Estimating background took 0.627239942551 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.132762908936 s
Creating peak regions... Creating peak regions took 0.21336889267 s
Estimating background... Estimating background took 0.617306947708 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0570919513702 s
Creating peak regions... Creating peak regions took 0.10665512085 s
Estimating background... Estimating background took 0.315308094025 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.334185123444 s
Creating peak regions... Creating peak regions took 0.428205013275 s
Estimating background... Estimating background took 1.43975114822 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0902009010315 s
Creating peak regions... Creating peak regions took 0.241373062134 s
Estimating background... Estimating background took 0.627418041229 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.12948679924 s
Creating peak regions... Creating peak regions took 0.277719974518 s
Estimating background... Estimating background took 0.72055888176 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.131531000137 s
Creating peak regions... Creating peak regions took 0.24799323082 s
Estimating background... Estimating background took 0.618620872498 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.217826128006 s
Creating peak regions... Creating peak regions took 0.45175409317 s
Estimating background... Estimating background took 1.12615585327 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.235028982162 s
Creating peak regions... Creating peak regions took 0.390496015549 s
Estimating background... Estimating background took 0.919464111328 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.10943198204 s
Creating peak regions... Creating peak regions took 0.29892206192 s
Estimating background... Estimating background took 0.723244905472 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.161136865616 s
Creating peak regions... Creating peak regions took 0.34280705452 s
Estimating background... Estimating background took 2.27164888382 s


Processing Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam
Reading in data... Reading data took 0.215939998627 s
Creating peak regions... Creating peak regions took 0.419924020767 s
Estimating background... Estimating background took 1.03105092049 s