INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist=None, center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/sacCer3/sacCer3.chrom.sizes', e4='PeakXus', fastq='Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='Hsf1-HS12-Rep1-GSM2601082/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.277141809464 s
Creating peak regions... Creating peak regions took 0.106761932373 s
Estimating background... Estimating background took 0.164710998535 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.335732936859 s
Creating peak regions... Creating peak regions took 0.227763175964 s
Estimating background... Estimating background took 0.109631061554 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.17293381691 s
Creating peak regions... Creating peak regions took 0.078369140625 s
Estimating background... Estimating background took 0.122297048569 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.854677915573 s
Creating peak regions... Creating peak regions took 0.50984787941 s
Estimating background... Estimating background took 0.109562158585 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.179290056229 s
Creating peak regions... Creating peak regions took 0.107203960419 s
Estimating background... Estimating background took 0.109401941299 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.0217339992523 s
Creating peak regions... Creating peak regions took 0.0259728431702 s
Estimating background... Estimating background took 0.122210979462 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.287141084671 s
Creating peak regions... Creating peak regions took 0.189352989197 s
Estimating background... Estimating background took 0.110897064209 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.116052150726 s
Creating peak regions... Creating peak regions took 0.0724620819092 s
Estimating background... Estimating background took 0.122550010681 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.605659008026 s
Creating peak regions... Creating peak regions took 0.373584985733 s
Estimating background... Estimating background took 0.111404895782 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.213350057602 s
Creating peak regions... Creating peak regions took 0.141753911972 s
Estimating background... Estimating background took 0.108837127686 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.345484972 s
Creating peak regions... Creating peak regions took 0.196827888489 s
Estimating background... Estimating background took 0.112357854843 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.228980064392 s
Creating peak regions... Creating peak regions took 0.169486045837 s
Estimating background... Estimating background took 0.123940944672 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.398614883423 s
Creating peak regions... Creating peak regions took 0.253485918045 s
Estimating background... Estimating background took 0.110925197601 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.339688777924 s
Creating peak regions... Creating peak regions took 0.249274969101 s
Estimating background... Estimating background took 0.111174821854 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.363979101181 s
Creating peak regions... Creating peak regions took 0.21409702301 s
Estimating background... Estimating background took 0.112228155136 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.4473528862 s
Creating peak regions... Creating peak regions took 0.290127038956 s
Estimating background... Estimating background took 0.113595962524 s


Processing Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam
Reading in data... Reading data took 0.356291055679 s
Creating peak regions... Creating peak regions took 0.253071069717 s
Estimating background... Estimating background took 0.113305091858 s