============================================== 2018-06-06 18:42:50 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.bam --out Hsf1-HS3-Rep3-GSM2601077/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 444 HitCounts: 61022.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 1 reads. The genome is segmented into 8 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 7 Insignificant: 5 Filtered: 0 Finish binding event prediction: 1.0s Running with 4 threads ... --------------------------- Events discovered Significant: 7 Insignificant: 5 Filtered: 0 Finish binding event prediction: 1.0s ============================================== 2018-06-06 18:42:56 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.bam --out Hsf1-MHS-Rep2-GSM2601073/aligned.36mers.unique.GPS ============================================== 2018-06-06 18:42:56 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.bam --out Hsf1-HS6-Rep2-GSM2601079/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 57420 HitCounts: 111733.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads. The genome is segmented into 1762 regions for analysis. Original read count stats: Running with 4 threads ... _IP Bases: 507197 HitCounts: 697747.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 32 reads. ============================================== 2018-06-06 18:42:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.bam --out Hsf1-HS6-Rep1-GSM2601078/aligned.36mers.unique.GPS The genome is segmented into 21258 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:42:58 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.bam --out Hsf1-MHS-Rep1-GSM2601072/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 177432 HitCounts: 889743.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 18 reads. The genome is segmented into 18250 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 74012 HitCounts: 1345928.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 9 reads. The genome is segmented into 6580 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:43:01 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.bam --out Hsf1-HS6-Rep3-GSM2601080/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 6839 HitCounts: 2167784.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 114 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:43:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.bam --out Hsf1-HS12-Rep1-GSM2601082/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 2718 HitCounts: 1140172.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. The genome is segmented into 175 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:43:03 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.bam --out Hsf1-HS15-Rep1-GSM2601083/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 8436 HitCounts: 2730499.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 6 reads. The genome is segmented into 140 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 102 Insignificant: 8 Filtered: 3 Finish binding event prediction: 2.2s Running with 4 threads ... --------------------------- Events discovered Significant: 102 Insignificant: 8 Filtered: 3 Finish binding event prediction: 1.0s --------------------------- Events discovered Significant: 85 Insignificant: 1 Filtered: 6 Finish binding event prediction: 5.1s Running with 4 threads ... ============================================== 2018-06-06 18:43:07 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.bam --out Hsf1-HS3-Rep1-GSM2601075/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 57155 HitCounts: 1351718.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 10 reads. The genome is segmented into 2371 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 18:43:09 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.bam --out Hsf1-HS3-Rep2-GSM2601076/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 243793 HitCounts: 483324.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 23 reads. The genome is segmented into 18911 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 85 Insignificant: 1 Filtered: 6 Finish binding event prediction: 6.0s ============================================== 2018-06-06 18:43:17 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.bam --out Hsf1-HS9-Rep1-GSM2601081/aligned.36mers.unique.GPS ============================================== 2018-06-06 18:43:18 Original read count stats: Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.bam --out Hsf1-MHS-Rep3-GSM2601074/aligned.36mers.unique.GPS _IP Bases: 19375 HitCounts: 3383741.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 852 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 11684 HitCounts: 4918788.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 727 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 158 Insignificant: 33 Filtered: 7 Finish binding event prediction: 3.1s Running with 4 threads ... --------------------------- Events discovered Significant: 158 Insignificant: 33 Filtered: 7 Finish binding event prediction: 2.0s --------------------------- Events discovered Significant: 162 Insignificant: 0 Filtered: 8 Finish binding event prediction: 20.1s Running with 4 threads ... --------------------------- Events discovered Significant: 121 Insignificant: 13 Filtered: 8 Finish binding event prediction: 7.1s Running with 4 threads ... --------------------------- Events discovered Significant: 121 Insignificant: 13 Filtered: 8 Finish binding event prediction: 6.0s --------------------------- Events discovered Significant: 162 Insignificant: 0 Filtered: 8 Finish binding event prediction: 23.1s --------------------------- Events discovered Significant: 193 Insignificant: 0 Filtered: 1 Finish binding event prediction: 55.3s Running with 4 threads ... --------------------------- Events discovered Significant: 232 Insignificant: 1 Filtered: 4 Finish binding event prediction: 47.1s Running with 4 threads ... --------------------------- Events discovered Significant: 193 Insignificant: 0 Filtered: 1 Finish binding event prediction: 5.0s --------------------------- Events discovered Significant: 420 Insignificant: 0 Filtered: 7 Finish binding event prediction: 1.1m Running with 4 threads ... --------------------------- Events discovered Significant: 543 Insignificant: 36 Filtered: 18 Finish binding event prediction: 1.0m Refine read distribution from 194 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 438 Insignificant: 30 Filtered: 23 Finish binding event prediction: 1.3m Running with 4 threads ... --------------------------- Events discovered Significant: 232 Insignificant: 1 Filtered: 4 Finish binding event prediction: 26.0s --------------------------- Events discovered Significant: 420 Insignificant: 0 Filtered: 7 Finish binding event prediction: 20.1s --------------------------- Events discovered Significant: 438 Insignificant: 30 Filtered: 23 Finish binding event prediction: 9.1s --------------------------- Events discovered Significant: 445 Insignificant: 108 Filtered: 4 Finish binding event prediction: 20.1s --------------------------- Events discovered Significant: 380 Insignificant: 13 Filtered: 7 Finish binding event prediction: 1.8m Running with 4 threads ... --------------------------- Events discovered Significant: 380 Insignificant: 13 Filtered: 7 Finish binding event prediction: 8.1s