INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg19/wgEncodeHg19ConsensusSignalArtifactRegions.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg19/female.hg19.chrom.sizes', e4='PeakXus', fastq='H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='H3K27ac-ChIP-exo-GSM2212053/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 14.0284800529 s
Creating peak regions... Creating peak regions took 70.3335149288 s
Estimating background... Estimating background took 148.129553795 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 11.504472971 s
Creating peak regions... Creating peak regions took 67.0811600685 s
Estimating background... Estimating background took 116.839287043 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 11.1375658512 s
Creating peak regions... Creating peak regions took 54.7517001629 s
Estimating background... Estimating background took 115.435878038 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 6.87908887863 s
Creating peak regions... Creating peak regions took 58.18435812 s
Estimating background... Estimating background took 65.1172719002 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 7.48475003242 s
Creating peak regions... Creating peak regions took 46.9984519482 s
Estimating background... Estimating background took 81.2178449631 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 8.23991703987 s
Creating peak regions... Creating peak regions took 44.8569190502 s
Estimating background... Estimating background took 88.7309410572 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 8.77470803261 s
Creating peak regions... Creating peak regions took 46.9070980549 s
Estimating background... Estimating background took 83.7507741451 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 7.36641001701 s
Creating peak regions... Creating peak regions took 44.8554570675 s
Estimating background... Estimating background took 68.8129310608 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 6.09325695038 s
Creating peak regions... Creating peak regions took 38.2670199871 s
Estimating background... Estimating background took 66.940623045 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 10.0906360149 s
Creating peak regions... Creating peak regions took 42.9198851585 s
Estimating background... Estimating background took 98.5519020557 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 9.64675498009 s
Creating peak regions... Creating peak regions took 39.0132648945 s
Estimating background... Estimating background took 103.467983961 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 9.7482521534 s
Creating peak regions... Creating peak regions took 42.4306299686 s
Estimating background... Estimating background took 99.422604084 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 3.76797389984 s
Creating peak regions... Creating peak regions took 32.6024980545 s
Estimating background... Estimating background took 32.1306388378 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 6.56052494049 s
Creating peak regions... Creating peak regions took 35.9692499638 s
Estimating background... Estimating background took 62.9776790142 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 6.32870292664 s
Creating peak regions... Creating peak regions took 34.7192790508 s
Estimating background... Estimating background took 61.9889919758 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 5.52882194519 s
Creating peak regions... Creating peak regions took 28.2500228882 s
Estimating background... Estimating background took 51.6311290264 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 10.0852031708 s
Creating peak regions... Creating peak regions took 27.724148035 s
Estimating background... Estimating background took 103.219540834 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 3.11761403084 s
Creating peak regions... Creating peak regions took 24.9869267941 s
Estimating background... Estimating background took 29.5980291367 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 7.71699810028 s
Creating peak regions... Creating peak regions took 20.3797650337 s
Estimating background... Estimating background took 78.3940620422 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 4.62371587753 s
Creating peak regions... Creating peak regions took 17.9811890125 s
Estimating background... Estimating background took 41.0178079605 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 3.04221487045 s
Creating peak regions... Creating peak regions took 13.690518856 s
Estimating background... Estimating background took 26.9589858055 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 3.68889808655 s
Creating peak regions... Creating peak regions took 16.7311050892 s
Estimating background... Estimating background took 35.2493169308 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 4.87337994576 s
Creating peak regions... Creating peak regions took 41.9484689236 s
Estimating background... Estimating background took 44.1624801159 s


Processing H3K27ac-ChIP-exo-GSM2212053/aligned.36mers.unique.bam
Reading in data... Reading data took 0.393729925156 s
Creating peak regions... Creating peak regions took 0.269959926605 s
Estimating background... Estimating background took 0.787198066711 s