INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF85-SRR5197261.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF85-SRR5197261/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.92595005035 s
Creating peak regions... Creating peak regions took 76.1151571274 s
Estimating background... Estimating background took 24.5160021782 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.89075493813 s
Creating peak regions... Creating peak regions took 38.7913000584 s
Estimating background... Estimating background took 10.5024089813 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.92485284805 s
Creating peak regions... Creating peak regions took 41.270483017 s
Estimating background... Estimating background took 10.2407031059 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF85-SRR5197261.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF85-SRR5197261/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.9199860096 s
Creating peak regions... Creating peak regions took 75.6461651325 s
Estimating background... Estimating background took 23.9832131863 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.81837201118 s
Creating peak regions... Creating peak regions took 38.9879209995 s
Estimating background... Estimating background took 9.97880911827 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.94005513191 s
Creating peak regions... Creating peak regions took 41.5897209644 s
Estimating background... Estimating background took 10.1751861572 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.11079001427 s
Creating peak regions... Creating peak regions took 38.7393290997 s
Estimating background... Estimating background took 10.0969882011 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.63784694672 s
Creating peak regions... Creating peak regions took 34.728386879 s
Estimating background... Estimating background took 9.12388086319 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.35137295723 s
Creating peak regions... Creating peak regions took 30.3480799198 s
Estimating background... Estimating background took 6.76980686188 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.45700597763 s
Creating peak regions... Creating peak regions took 29.3964178562 s
Estimating background... Estimating background took 7.98307299614 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.27316713333 s
Creating peak regions... Creating peak regions took 25.8455071449 s
Estimating background... Estimating background took 7.2969288826 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.76701402664 s
Creating peak regions... Creating peak regions took 25.8238999844 s
Estimating background... Estimating background took 9.03170704842 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.20574307442 s
Creating peak regions... Creating peak regions took 22.8381140232 s
Estimating background... Estimating background took 5.22525477409 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.04239320755 s
Creating peak regions... Creating peak regions took 17.9223921299 s
Estimating background... Estimating background took 6.19642496109 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.25326800346 s
Creating peak regions... Creating peak regions took 74.679142952 s
Estimating background... Estimating background took 15.8139610291 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.954946041107 s
Creating peak regions... Creating peak regions took 18.8590660095 s
Estimating background... Estimating background took 5.55505084991 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.576575040817 s
Creating peak regions... Creating peak regions took 14.5272011757 s
Estimating background... Estimating background took 3.59067177773 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.827570915222 s
Creating peak regions... Creating peak regions took 14.6169161797 s
Estimating background... Estimating background took 5.84095907211 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.69843006134 s
Creating peak regions... Creating peak regions took 61.1539311409 s
Estimating background... Estimating background took 12.8835039139 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.10184597969 s
Creating peak regions... Creating peak regions took 54.9474310875 s
Estimating background... Estimating background took 9.83970308304 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.45483207703 s
Creating peak regions... Creating peak regions took 51.9416561127 s
Estimating background... Estimating background took 12.627393961 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.81347513199 s
Creating peak regions... Creating peak regions took 53.0267469883 s
Estimating background... Estimating background took 13.6306760311 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.29857897758 s
Creating peak regions... Creating peak regions took 46.5667359829 s
Estimating background... Estimating background took 12.2776858807 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.94733095169 s
Creating peak regions... Creating peak regions took 42.0742328167 s
Estimating background... Estimating background took 9.3352971077 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.77502012253 s
Creating peak regions... Creating peak regions took 39.2512748241 s
Estimating background... Estimating background took 9.53649616241 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0797340869904 s
Creating peak regions... Creating peak regions took 0.157890081406 s
Estimating background... Estimating background took 1.10923695564 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.23177504539 s
Creating peak regions... Creating peak regions took 44.7476890087 s
Estimating background... Estimating background took 12.6578581333 s


Processing ZNF85-SRR5197261.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0870540142059 s
Creating peak regions... Creating peak regions took 14.3395268917 s
Estimating background... Estimating background took 0.59738612175 s