INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF8-SRR5197266.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF8-SRR5197266/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 7.39250612259 s
Creating peak regions... Creating peak regions took 74.6748850346 s
Estimating background... Estimating background took 71.0317180157 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.96080803871 s
Creating peak regions... Creating peak regions took 39.8207969666 s
Estimating background... Estimating background took 28.6420099735 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.6353969574 s
Creating peak regions... Creating peak regions took 36.8079471588 s
Estimating background... Estimating background took 26.906236887 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF8-SRR5197266.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF8-SRR5197266/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.90553379059 s
Creating peak regions... Creating peak regions took 69.358809948 s
Estimating background... Estimating background took 64.3796198368 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.50542116165 s
Creating peak regions... Creating peak regions took 37.2398200035 s
Estimating background... Estimating background took 27.1841630936 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.46682095528 s
Creating peak regions... Creating peak regions took 36.7836408615 s
Estimating background... Estimating background took 27.9383718967 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.67705488205 s
Creating peak regions... Creating peak regions took 35.0944070816 s
Estimating background... Estimating background took 29.5185010433 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.08699297905 s
Creating peak regions... Creating peak regions took 31.5760819912 s
Estimating background... Estimating background took 28.6443901062 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.56812405586 s
Creating peak regions... Creating peak regions took 28.8396420479 s
Estimating background... Estimating background took 18.2994959354 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.3498840332 s
Creating peak regions... Creating peak regions took 27.3238830566 s
Estimating background... Estimating background took 21.2102470398 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.26988315582 s
Creating peak regions... Creating peak regions took 25.0171010494 s
Estimating background... Estimating background took 19.8606469631 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.2675409317 s
Creating peak regions... Creating peak regions took 24.0551848412 s
Estimating background... Estimating background took 27.32914114 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.85458493233 s
Creating peak regions... Creating peak regions took 22.3803009987 s
Estimating background... Estimating background took 13.4694218636 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.88805007935 s
Creating peak regions... Creating peak regions took 16.0014529228 s
Estimating background... Estimating background took 16.9905819893 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.87544322014 s
Creating peak regions... Creating peak regions took 65.9252400398 s
Estimating background... Estimating background took 47.0078020096 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.00551009178 s
Creating peak regions... Creating peak regions took 19.6654369831 s
Estimating background... Estimating background took 17.7108180523 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.27208089828 s
Creating peak regions... Creating peak regions took 12.9959890842 s
Estimating background... Estimating background took 8.56966710091 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.4832379818 s
Creating peak regions... Creating peak regions took 14.2583549023 s
Estimating background... Estimating background took 16.3888678551 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.47509789467 s
Creating peak regions... Creating peak regions took 53.5489029884 s
Estimating background... Estimating background took 34.8233861923 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.18264508247 s
Creating peak regions... Creating peak regions took 51.5170590878 s
Estimating background... Estimating background took 26.6336421967 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.3808119297 s
Creating peak regions... Creating peak regions took 49.4093608856 s
Estimating background... Estimating background took 34.7933030128 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.83454489708 s
Creating peak regions... Creating peak regions took 48.7324810028 s
Estimating background... Estimating background took 38.7932448387 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.41493082047 s
Creating peak regions... Creating peak regions took 43.0011351109 s
Estimating background... Estimating background took 34.563352108 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.13541817665 s
Creating peak regions... Creating peak regions took 38.5819790363 s
Estimating background... Estimating background took 23.4855918884 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.73803400993 s
Creating peak regions... Creating peak regions took 36.2044270039 s
Estimating background... Estimating background took 23.4700648785 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.127871990204 s
Creating peak regions... Creating peak regions took 0.204302072525 s
Estimating background... Estimating background took 0.538486003876 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.95197105408 s
Creating peak regions... Creating peak regions took 41.5716660023 s
Estimating background... Estimating background took 35.2749729156 s


Processing ZNF8-SRR5197266.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.261907100677 s
Creating peak regions... Creating peak regions took 14.1768190861 s
Estimating background... Estimating background took 0.769922018051 s