INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZNF7-SRR5197253.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF7-SRR5197253/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.11918401718 s
Creating peak regions... Creating peak regions took 78.7677910328 s
Estimating background... Estimating background took 43.5870959759 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.09990310669 s
Creating peak regions... Creating peak regions took 41.6775009632 s
Estimating background... Estimating background took 17.7160661221 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.02607917786 s
Creating peak regions... Creating peak regions took 39.405436039 s
Estimating background... Estimating background took 16.4124038219 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZNF7-SRR5197253.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZNF7-SRR5197253/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.43451404572 s
Creating peak regions... Creating peak regions took 68.4517869949 s
Estimating background... Estimating background took 35.5533349514 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.18987202644 s
Creating peak regions... Creating peak regions took 33.0533659458 s
Estimating background... Estimating background took 14.5959470272 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.24584388733 s
Creating peak regions... Creating peak regions took 32.8099689484 s
Estimating background... Estimating background took 14.8267500401 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.40427303314 s
Creating peak regions... Creating peak regions took 35.7346651554 s
Estimating background... Estimating background took 15.7243819237 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.00637507439 s
Creating peak regions... Creating peak regions took 26.9869031906 s
Estimating background... Estimating background took 13.9082980156 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.75401806831 s
Creating peak regions... Creating peak regions took 30.579636097 s
Estimating background... Estimating background took 11.8584830761 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.92031383514 s
Creating peak regions... Creating peak regions took 27.9937279224 s
Estimating background... Estimating background took 14.0715379715 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.92874622345 s
Creating peak regions... Creating peak regions took 25.1603600979 s
Estimating background... Estimating background took 11.6417639256 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.19864583015 s
Creating peak regions... Creating peak regions took 26.0932581425 s
Estimating background... Estimating background took 14.9341421127 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.48122382164 s
Creating peak regions... Creating peak regions took 22.810074091 s
Estimating background... Estimating background took 9.19449996948 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.46650409698 s
Creating peak regions... Creating peak regions took 18.3498189449 s
Estimating background... Estimating background took 9.69987297058 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.71246600151 s
Creating peak regions... Creating peak regions took 76.4575910568 s
Estimating background... Estimating background took 28.9915750027 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.55050611496 s
Creating peak regions... Creating peak regions took 20.0649240017 s
Estimating background... Estimating background took 9.34714698792 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.923738002777 s
Creating peak regions... Creating peak regions took 14.3107728958 s
Estimating background... Estimating background took 5.80295705795 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.14048099518 s
Creating peak regions... Creating peak regions took 15.4280769825 s
Estimating background... Estimating background took 8.96117901802 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.61418795586 s
Creating peak regions... Creating peak regions took 59.2462210655 s
Estimating background... Estimating background took 22.59091115 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.26677179337 s
Creating peak regions... Creating peak regions took 52.7037909031 s
Estimating background... Estimating background took 17.5076220036 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.34654307365 s
Creating peak regions... Creating peak regions took 53.5585951805 s
Estimating background... Estimating background took 21.3592028618 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.55795502663 s
Creating peak regions... Creating peak regions took 48.8013410568 s
Estimating background... Estimating background took 22.6275367737 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.5597448349 s
Creating peak regions... Creating peak regions took 47.6296138763 s
Estimating background... Estimating background took 21.3731000423 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.80117082596 s
Creating peak regions... Creating peak regions took 41.879224062 s
Estimating background... Estimating background took 15.0317461491 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.82604885101 s
Creating peak regions... Creating peak regions took 43.4017379284 s
Estimating background... Estimating background took 15.7721741199 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.101719141006 s
Creating peak regions... Creating peak regions took 0.204602003098 s
Estimating background... Estimating background took 0.649395942688 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.63292503357 s
Creating peak regions... Creating peak regions took 50.0186059475 s
Estimating background... Estimating background took 23.9119200706 s


Processing ZNF7-SRR5197253.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.192826032639 s
Creating peak regions... Creating peak regions took 16.1208238602 s
Estimating background... Estimating background took 0.688261032104 s