INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIM2_1-SRR5197045/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.60878705978 s
Creating peak regions... Creating peak regions took 61.6511728764 s
Estimating background... Estimating background took 34.5987830162 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.30056095123 s
Creating peak regions... Creating peak regions took 33.9498870373 s
Estimating background... Estimating background took 14.2018129826 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.20037889481 s
Creating peak regions... Creating peak regions took 32.7264988422 s
Estimating background... Estimating background took 13.6122710705 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIM2_1-SRR5197045/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.56534194946 s
Creating peak regions... Creating peak regions took 70.5408799648 s
Estimating background... Estimating background took 37.0505299568 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.64137601852 s
Creating peak regions... Creating peak regions took 37.2188689709 s
Estimating background... Estimating background took 15.5097131729 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.90342879295 s
Creating peak regions... Creating peak regions took 37.4991569519 s
Estimating background... Estimating background took 15.3851680756 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.64978408813 s
Creating peak regions... Creating peak regions took 40.0029549599 s
Estimating background... Estimating background took 16.4399092197 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.39140915871 s
Creating peak regions... Creating peak regions took 32.0181059837 s
Estimating background... Estimating background took 15.326280117 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.02320480347 s
Creating peak regions... Creating peak regions took 29.4755570889 s
Estimating background... Estimating background took 10.7141160965 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.8879430294 s
Creating peak regions... Creating peak regions took 27.7861349583 s
Estimating background... Estimating background took 11.8738250732 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.11837697029 s
Creating peak regions... Creating peak regions took 25.2013440132 s
Estimating background... Estimating background took 11.7844879627 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.33975696564 s
Creating peak regions... Creating peak regions took 25.5315852165 s
Estimating background... Estimating background took 14.8084380627 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.44366884232 s
Creating peak regions... Creating peak regions took 22.3468708992 s
Estimating background... Estimating background took 7.76991295815 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.74155282974 s
Creating peak regions... Creating peak regions took 18.1257281303 s
Estimating background... Estimating background took 10.281899929 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.43246388435 s
Creating peak regions... Creating peak regions took 68.8024611473 s
Estimating background... Estimating background took 25.6636600494 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.53108882904 s
Creating peak regions... Creating peak regions took 19.3826749325 s
Estimating background... Estimating background took 9.70075702667 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.880367994308 s
Creating peak regions... Creating peak regions took 14.0410740376 s
Estimating background... Estimating background took 5.07774090767 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.27038598061 s
Creating peak regions... Creating peak regions took 15.4787459373 s
Estimating background... Estimating background took 9.40453410149 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.86129188538 s
Creating peak regions... Creating peak regions took 58.9192569256 s
Estimating background... Estimating background took 20.7506790161 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.15118098259 s
Creating peak regions... Creating peak regions took 52.3720622063 s
Estimating background... Estimating background took 15.1726658344 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.45378780365 s
Creating peak regions... Creating peak regions took 50.5343999863 s
Estimating background... Estimating background took 19.4904170036 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.82312202454 s
Creating peak regions... Creating peak regions took 48.7604999542 s
Estimating background... Estimating background took 22.2382481098 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.54217004776 s
Creating peak regions... Creating peak regions took 43.5162949562 s
Estimating background... Estimating background took 19.7519309521 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.90866613388 s
Creating peak regions... Creating peak regions took 40.9684500694 s
Estimating background... Estimating background took 13.6264898777 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.50584197044 s
Creating peak regions... Creating peak regions took 38.2698829174 s
Estimating background... Estimating background took 14.094837904 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0930259227753 s
Creating peak regions... Creating peak regions took 0.143491029739 s
Estimating background... Estimating background took 0.711647033691 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.32635116577 s
Creating peak regions... Creating peak regions took 43.870661974 s
Estimating background... Estimating background took 18.8341858387 s


Processing ZIM2_1-SRR5197045.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.136691093445 s
Creating peak regions... Creating peak regions took 14.5231900215 s
Estimating background... Estimating background took 0.607735872269 s