==============================================
2018-06-06 14:43:54
Options:
--min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ERalpha_ChIP-exo_replicate_2-GSM2994889/aligned.36mers.unique.bam --out ERalpha_ChIP-exo_replicate_2-GSM2994889/aligned.36mers.unique.GPS 

==============================================
2018-06-06 14:43:58
Options:
--min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt FoxA1_ChIP-exo_replicate_2-GSM2994891/aligned.36mers.unique.bam --out FoxA1_ChIP-exo_replicate_2-GSM2994891/aligned.36mers.unique.GPS 

==============================================
2018-06-06 14:43:58
Options:
--min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ERalpha_ChIP-exo_replicate_1-GSM2994888/aligned.36mers.unique.bam --out ERalpha_ChIP-exo_replicate_1-GSM2994888/aligned.36mers.unique.GPS 

Original read count stats:
_IP  	Bases: 9758456	HitCounts: 1.5675521E7

At Poisson p-value 1.0e-03, in a 301bp window, expect 6 reads.


==============================================
2018-06-06 14:44:22
Options:
--min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt FoxA1_ChIP-exo_replicate_1-GSM2994890/aligned.36mers.unique.bam --out FoxA1_ChIP-exo_replicate_1-GSM2994890/aligned.36mers.unique.GPS 

The genome is segmented into 552243 regions for analysis.

Running with 4 threads ...


==============================================
2018-06-06 14:44:26
Options:
--min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt CTCF_ChIP-exo_replicate_1-GSM2994892/aligned.36mers.unique.bam --out CTCF_ChIP-exo_replicate_1-GSM2994892/aligned.36mers.unique.GPS 

Original read count stats:
_IP  	Bases: 13697296	HitCounts: 1.7798168E7

At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads.


Original read count stats:
_IP  	Bases: 12090893	HitCounts: 1.7618721E7

The genome is segmented into 1062833 regions for analysis.

At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads.


Running with 4 threads ...


The genome is segmented into 682457 regions for analysis.

Running with 4 threads ...


Original read count stats:
_IP  	Bases: 18339829	HitCounts: 2.1176604E7

At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads.


Original read count stats:
_IP  	Bases: 17318560	HitCounts: 2.1590553E7

The genome is segmented into 1583852 regions for analysis.

At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads.


Running with 4 threads ...


The genome is segmented into 1117978 regions for analysis.

Running with 4 threads ...

---------------------------
Events discovered 
Significant:	15714
Insignificant:	1240
Filtered:	3810

Finish binding event prediction: 2.9m

Refine read distribution from 2000 binding events. 

---------------------------
Events discovered 
Significant:	28843
Insignificant:	1137
Filtered:	1688

Finish binding event prediction: 3.0m

Refine read distribution from 2000 binding events. 


Running with 4 threads ...


Running with 4 threads ...

---------------------------
Events discovered 
Significant:	21404
Insignificant:	1275
Filtered:	5293

Finish binding event prediction: 3.5m

Refine read distribution from 2000 binding events. 


Running with 4 threads ...

---------------------------
Events discovered 
Significant:	24360
Insignificant:	7160
Filtered:	112

Finish binding event prediction: 1.3m

Refine read distribution from 2000 binding events. 

---------------------------
Events discovered 
Significant:	29210
Insignificant:	13772
Filtered:	46

Finish binding event prediction: 1.6m

Refine read distribution from 2000 binding events. 

---------------------------
Events discovered 
Significant:	40400
Insignificant:	854
Filtered:	2787

Finish binding event prediction: 5.1m

Refine read distribution from 2000 binding events. 


Running with 4 threads ...

---------------------------
Events discovered 
Significant:	84843
Insignificant:	719
Filtered:	12472

Finish binding event prediction: 5.1m

Refine read distribution from 2000 binding events. 


Running with 4 threads ...

---------------------------
Events discovered 
Significant:	41078
Insignificant:	15135
Filtered:	24

Finish binding event prediction: 2.2m

Refine read distribution from 2000 binding events. 

---------------------------
Events discovered 
Significant:	36425
Insignificant:	6088
Filtered:	112

Finish binding event prediction: 1.9m

Refine read distribution from 2000 binding events. 

---------------------------
Events discovered 
Significant:	74606
Insignificant:	6999
Filtered:	79

Finish binding event prediction: 2.0m

Refine read distribution from 2000 binding events.