python /oak/stanford/groups/akundaje/marinovg/programs/PeakXus/src/PeakXus.py Brachyury-GSM1327309/aligned.36mers.unique.bam Brachyury-GSM1327309/peakXus/ /oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes --blacklist /oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed