INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_Myc-GSM1606989/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_Myc-GSM1606989/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_Myc-GSM1606989/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 15.9968249798 s Creating peak regions... Creating peak regions took 44.4243431091 s Estimating background... Estimating background took 99.1050400734 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 18.0552949905 s Creating peak regions... Creating peak regions took 52.7197480202 s Estimating background... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_Myc-GSM1606989/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 91.5029489994 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 15.2473320961 s Creating peak regions... Reading data took 14.8517489433 s Creating peak regions... Creating peak regions took 45.3276979923 s Estimating background... Creating peak regions took 52.627920866 s Estimating background... Estimating background took 96.6254448891 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 91.7282259464 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 16.5916638374 s Creating peak regions... Reading data took 17.8010919094 s Creating peak regions... Creating peak regions took 48.5569992065 s Estimating background... Creating peak regions took 49.1666939259 s Estimating background... Estimating background took 92.2826340199 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 88.029941082 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 14.7697880268 s Creating peak regions... Reading data took 17.9028229713 s Creating peak regions... Creating peak regions took 43.2832398415 s Estimating background... Creating peak regions took 57.542702198 s Estimating background... Estimating background took 84.6891019344 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 15.1755149364 s Creating peak regions... Estimating background took 86.2815799713 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 13.2791678905 s Creating peak regions... Creating peak regions took 49.7085988522 s Estimating background... Creating peak regions took 38.9467880726 s Estimating background... Estimating background took 81.1962947845 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 77.8875339031 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 15.3835740089 s Creating peak regions... Reading data took 15.4967131615 s Creating peak regions... Creating peak regions took 49.211660862 s Estimating background... Creating peak regions took 48.0917100906 s Estimating background... Estimating background took 78.5524599552 s Estimating background took 83.3999090195 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 14.0726921558 s Creating peak regions... Reading data took 13.0677609444 s Creating peak regions... Creating peak regions took 40.4026930332 s Estimating background... Creating peak regions took 41.4572219849 s Estimating background... Estimating background took 69.0519628525 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 71.7705581188 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 12.3867211342 s Creating peak regions... Reading data took 12.7012000084 s Creating peak regions... Creating peak regions took 36.2859141827 s Estimating background... Creating peak regions took 41.4634110928 s Estimating background... Estimating background took 70.4281840324 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 9.16768598557 s Creating peak regions... Estimating background took 77.0261499882 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 12.872726202 s Creating peak regions... Creating peak regions took 25.4686238766 s Estimating background... Creating peak regions took 38.9590129852 s Estimating background... Estimating background took 47.4863731861 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 25.2462830544 s Creating peak regions... Estimating background took 66.3019969463 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 12.1012730598 s Creating peak regions... Creating peak regions took 35.1337218285 s Estimating background... Creating peak regions took 80.2382891178 s Estimating background... Estimating background took 68.9964439869 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 9.71496295929 s Creating peak regions... Creating peak regions took 26.5898251534 s Estimating background... Estimating background took 46.1290640831 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 155.95648098 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.365674972534 s Creating peak regions... Creating peak regions took 0.755865097046 s Estimating background... Estimating background took 0.330165863037 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0848779678345 s Creating peak regions... Creating peak regions took 0.301066875458 s Estimating background... Estimating background took 0.325918912888 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0553321838379 s Creating peak regions... Creating peak regions took 0.216784000397 s Estimating background... Estimating background took 0.352041959763 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0659210681915 s Creating peak regions... Creating peak regions took 0.340448141098 s Estimating background... Estimating background took 0.38293504715 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 24.5554881096 s Creating peak regions... Reading data took 33.4264190197 s Creating peak regions... Creating peak regions took 69.4644300938 s Estimating background... Creating peak regions took 81.8502929211 s Estimating background... Estimating background took 136.42988801 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.683372974396 s Creating peak regions... Creating peak regions took 0.888015985489 s Estimating background... Estimating background took 0.388362884521 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0659258365631 s Creating peak regions... Creating peak regions took 0.412721157074 s Estimating background... Estimating background took 0.397388935089 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0868060588837 s Creating peak regions... Creating peak regions took 0.238717079163 s Estimating background... Estimating background took 0.394895076752 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0814418792725 s Creating peak regions... Creating peak regions took 0.332523822784 s Estimating background... Estimating background took 0.41601395607 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 26.4788291454 s Creating peak regions... Estimating background took 143.003350019 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 23.4506411552 s Creating peak regions... Creating peak regions took 69.2674849033 s Estimating background... Creating peak regions took 73.4561970234 s Estimating background... Estimating background took 122.817811966 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 21.756716013 s Creating peak regions... Estimating background took 124.859807968 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 25.6983690262 s Creating peak regions... Creating peak regions took 60.8919250965 s Estimating background... Creating peak regions took 72.1424319744 s Estimating background... Estimating background took 109.986388922 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 20.4193530083 s Creating peak regions... Estimating background took 122.874576092 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 1.45655989647 s Creating peak regions... Creating peak regions took 0.732439994812 s Estimating background... Estimating background took 0.403094053268 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0576219558716 s Creating peak regions... Creating peak regions took 0.246601819992 s Estimating background... Estimating background took 0.407284975052 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.103411912918 s Creating peak regions... Creating peak regions took 0.0534272193909 s Estimating background... Estimating background took 0.386757135391 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0579741001129 s Creating peak regions... Creating peak regions took 0.00297498703003 s Estimating background... Estimating background took 0.398396968842 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Creating peak regions took 57.579638958 s Estimating background... Reading data took 25.8379721642 s Creating peak regions... Creating peak regions took 67.3697719574 s Estimating background... Estimating background took 107.924528122 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.871180057526 s Creating peak regions... Creating peak regions took 0.497292995453 s Estimating background... Estimating background took 0.339807987213 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0527291297913 s Creating peak regions... Creating peak regions took 0.203572034836 s Estimating background... Estimating background took 0.390149116516 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0920541286469 s Creating peak regions... Creating peak regions took 0.0471639633179 s Estimating background... Estimating background took 0.416792154312 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0507299900055 s Creating peak regions... Creating peak regions took 0.00307893753052 s Estimating background... Estimating background took 0.366552114487 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 19.5275480747 s Creating peak regions... Creating peak regions took 57.8582959175 s Estimating background... Estimating background took 118.335175037 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 2.52486491203 s Creating peak regions... Creating peak regions took 0.810527086258 s Estimating background... Estimating background took 0.413902044296 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.079038143158 s Creating peak regions... Creating peak regions took 0.323556900024 s Estimating background... Estimating background took 0.403704881668 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0778260231018 s Creating peak regions... Creating peak regions took 0.316462039948 s Estimating background... Estimating background took 0.388493061066 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0613238811493 s Creating peak regions... Creating peak regions took 1.19962215424 s Estimating background... Estimating background took 0.390735149384 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 26.0051829815 s Creating peak regions... Estimating background took 102.66910696 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 1.1405441761 s Creating peak regions... Creating peak regions took 0.777778148651 s Estimating background... Estimating background took 0.429907083511 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0798211097717 s Creating peak regions... Creating peak regions took 0.288073062897 s Estimating background... Estimating background took 0.382178068161 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0545089244843 s Creating peak regions... Creating peak regions took 0.301515102386 s Estimating background... Estimating background took 0.371417045593 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0586669445038 s Creating peak regions... Creating peak regions took 1.0494799614 s Estimating background... Estimating background took 0.364208936691 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Creating peak regions took 67.6343071461 s Estimating background... Reading data took 19.3226139545 s Creating peak regions... Creating peak regions took 56.2527890205 s Estimating background... Estimating background took 121.089925051 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 25.1195590496 s Creating peak regions... Estimating background took 103.377012014 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 17.145622015 s Creating peak regions... Creating peak regions took 68.3745100498 s Estimating background... Creating peak regions took 57.1931920052 s Estimating background... Estimating background took 96.2295100689 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 20.916079998 s Creating peak regions... Estimating background took 93.1222300529 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 20.0567038059 s Creating peak regions... Creating peak regions took 61.3555011749 s Estimating background... Creating peak regions took 55.9172620773 s Estimating background... Estimating background took 102.78520298 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 89.032613039 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 21.3694620132 s Creating peak regions... Reading data took 17.3519349098 s Creating peak regions... Creating peak regions took 48.6543998718 s Estimating background... Creating peak regions took 62.6124200821 s Estimating background... Estimating background took 93.8127419949 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 1.23070502281 s Creating peak regions... Creating peak regions took 0.28665304184 s Estimating background... Estimating background took 0.832572937012 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0716609954834 s Creating peak regions... Creating peak regions took 0.0691719055176 s Estimating background... Estimating background took 0.416635990143 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0821058750153 s Creating peak regions... Creating peak regions took 0.0663280487061 s Estimating background... Estimating background took 0.395102977753 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0854518413544 s Creating peak regions... Creating peak regions took 0.0795719623566 s Estimating background... Estimating background took 0.394622802734 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0861699581146 s Creating peak regions... Creating peak regions took 0.10079407692 s Estimating background... Estimating background took 0.39873790741 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0938520431519 s Creating peak regions... Creating peak regions took 0.0945620536804 s Estimating background... Estimating background took 0.388596057892 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0887858867645 s Creating peak regions... Creating peak regions took 0.083153963089 s Estimating background... Estimating background took 0.39562702179 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0755250453949 s Creating peak regions... Creating peak regions took 0.0591640472412 s Estimating background... Estimating background took 0.383630990982 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0817620754242 s Creating peak regions... Creating peak regions took 0.047208070755 s Estimating background... Estimating background took 0.397485971451 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0875129699707 s Creating peak regions... Creating peak regions took 0.0781848430634 s Estimating background... Estimating background took 0.392590045929 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0633950233459 s Creating peak regions... Creating peak regions took 0.125756025314 s Estimating background... Estimating background took 0.394060850143 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.059152841568 s Creating peak regions... Creating peak regions took 0.0783569812775 s Estimating background... Estimating background took 0.398129940033 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0578801631927 s Creating peak regions... Creating peak regions took 0.0348889827728 s Estimating background... Estimating background took 0.396539926529 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.136710882187 s Creating peak regions... Creating peak regions took 0.0749640464783 s Estimating background... Estimating background took 0.611569881439 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0617480278015 s Creating peak regions... Creating peak regions took 0.0669479370117 s Estimating background... Estimating background took 0.397969961166 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0645751953125 s Creating peak regions... Creating peak regions took 0.0722651481628 s Estimating background... Estimating background took 0.3863530159 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.73849606514 s Creating peak regions... Creating peak regions took 0.0275211334229 s Estimating background... Estimating background took 0.718575954437 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.140682220459 s Creating peak regions... Creating peak regions took 0.0475971698761 s Estimating background... Estimating background took 0.502851963043 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.280761003494 s Creating peak regions... Creating peak regions took 0.0355620384216 s Estimating background... Estimating background took 0.604022026062 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.121258020401 s Creating peak regions... Creating peak regions took 0.0926840305328 s Estimating background... Estimating background took 0.502398014069 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0841479301453 s Creating peak regions... Creating peak regions took 0.0727519989014 s Estimating background... Estimating background took 0.412540912628 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.100126981735 s Creating peak regions... Creating peak regions took 0.048033952713 s Estimating background... Estimating background took 0.499938011169 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.475463867188 s Creating peak regions... Creating peak regions took 0.184633016586 s Estimating background... Estimating background took 1.24836587906 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Estimating background took 103.895610094 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 1.12234282494 s Creating peak regions... Creating peak regions took 0.27615904808 s Estimating background... Estimating background took 0.781918048859 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0711550712585 s Creating peak regions... Creating peak regions took 0.0747320652008 s Estimating background... Estimating background took 0.482058048248 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0569550991058 s Creating peak regions... Creating peak regions took 0.0589411258698 s Estimating background... Estimating background took 0.374362945557 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0579710006714 s Creating peak regions... Creating peak regions took 0.0782370567322 s Estimating background... Estimating background took 0.367462873459 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0855739116669 s Creating peak regions... Creating peak regions took 0.105234146118 s Estimating background... Estimating background took 0.36822104454 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0730209350586 s Creating peak regions... Creating peak regions took 0.115676879883 s Estimating background... Estimating background took 0.391986131668 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0713739395142 s Creating peak regions... Creating peak regions took 0.064847946167 s Estimating background... Estimating background took 0.370606899261 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0950241088867 s Creating peak regions... Creating peak regions took 0.0637829303741 s Estimating background... Estimating background took 0.35341501236 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0783469676971 s Creating peak regions... Creating peak regions took 0.0476608276367 s Estimating background... Estimating background took 0.368044137955 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0619301795959 s Creating peak regions... Creating peak regions took 0.0760059356689 s Estimating background... Estimating background took 0.375317811966 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0873670578003 s Creating peak regions... Creating peak regions took 0.136105060577 s Estimating background... Estimating background took 0.37432217598 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0839331150055 s Creating peak regions... Creating peak regions took 0.0782279968262 s Estimating background... Estimating background took 0.3651471138 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.057245016098 s Creating peak regions... Creating peak regions took 0.0379228591919 s Estimating background... Estimating background took 0.368994951248 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.137849092484 s Creating peak regions... Creating peak regions took 0.0799078941345 s Estimating background... Estimating background took 0.596112012863 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0675959587097 s Creating peak regions... Creating peak regions took 0.0789449214935 s Estimating background... Estimating background took 0.405352830887 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0902180671692 s Creating peak regions... Creating peak regions took 0.082720041275 s Estimating background... Estimating background took 0.408962011337 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.899678945541 s Creating peak regions... Creating peak regions took 0.0362429618835 s Estimating background... Estimating background took 0.693340063095 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 16.1617760658 s Creating peak regions... Reading data took 0.123823165894 s Creating peak regions... Creating peak regions took 0.0494830608368 s Estimating background... Estimating background took 0.460901975632 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.285624027252 s Creating peak regions... Creating peak regions took 0.0376031398773 s Estimating background... Estimating background took 0.598342180252 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.102403879166 s Creating peak regions... Creating peak regions took 0.0983481407166 s Estimating background... Estimating background took 0.514331102371 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.0889348983765 s Creating peak regions... Creating peak regions took 0.09818983078 s Estimating background... Estimating background took 0.419651031494 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.14253115654 s Creating peak regions... Creating peak regions took 0.0568299293518 s Estimating background... Estimating background took 0.517368078232 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.481510877609 s Creating peak regions... Creating peak regions took 0.211241960526 s Estimating background... Estimating background took 1.34547591209 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 16.3668439388 s Creating peak regions... Creating peak regions took 59.7431118488 s Estimating background... Creating peak regions took 62.4777858257 s Estimating background... Estimating background took 69.8125708103 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.840656995773 s Creating peak regions... Creating peak regions took 0.696721076965 s Estimating background... Estimating background took 0.494569063187 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.310997009277 s Creating peak regions... Estimating background took 77.3041918278 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.809598922729 s Creating peak regions... Creating peak regions took 0.578750133514 s Estimating background... Estimating background took 0.46296787262 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Reading data took 0.284529924393 s Creating peak regions... Creating peak regions took 32.8904359341 s Estimating background... Estimating background took 0.581324100494 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Creating peak regions took 27.0880820751 s Estimating background... Estimating background took 0.706403017044 s Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data... Processing control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam Reading in data...