INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_E2f3-GSM1606988/alignments.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_E2f3-GSM1606988/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_E2f3-GSM1606988/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 15.9776639938 s Creating peak regions... Creating peak regions took 54.124215126 s Estimating background... Estimating background took 242.04084301 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.5367689133 s Creating peak regions... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/mm10.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/mm10/mm10.chrom.sizes', e4='PeakXus', fastq='control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='control_crypts_E2f3-GSM1606988/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 17.3898379803 s Creating peak regions... Creating peak regions took 60.6083660126 s Estimating background... Creating peak regions took 56.4816868305 s Estimating background... Estimating background took 205.525763988 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 16.9946761131 s Creating peak regions... Estimating background took 210.54477191 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 17.7064540386 s Creating peak regions... Creating peak regions took 59.598072052 s Estimating background... Creating peak regions took 57.9806330204 s Estimating background... Estimating background took 190.533894062 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Estimating background took 183.693710089 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 21.6366920471 s Creating peak regions... Reading data took 17.2404558659 s Creating peak regions... Creating peak regions took 53.5481390953 s Estimating background... Creating peak regions took 70.8066289425 s Estimating background... Estimating background took 182.936466932 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 17.1718199253 s Creating peak regions... Estimating background took 213.370872974 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 19.0769999027 s Creating peak regions... Creating peak regions took 61.1087470055 s Estimating background... Creating peak regions took 72.0624201298 s Estimating background... Estimating background took 199.131193876 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 21.893597126 s Creating peak regions... Estimating background took 196.875912905 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 17.1175541878 s Creating peak regions... Creating peak regions took 67.5222830772 s Estimating background... Creating peak regions took 56.034181118 s Estimating background... Estimating background took 193.949986935 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 16.330906868 s Creating peak regions... Estimating background took 184.183104038 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 19.0362970829 s Creating peak regions... Creating peak regions took 53.6570420265 s Estimating background... Creating peak regions took 63.7717101574 s Estimating background... Estimating background took 165.171666861 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 13.8594090939 s Creating peak regions... Estimating background took 181.221811056 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 49.3813688755 s Estimating background... Reading data took 14.4100780487 s Creating peak regions... Creating peak regions took 53.0322499275 s Estimating background... Estimating background took 155.683689117 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 12.3555450439 s Creating peak regions... Creating peak regions took 42.7871940136 s Estimating background... Estimating background took 160.102688074 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 15.965790987 s Creating peak regions... Creating peak regions took 51.5853631496 s Estimating background... Estimating background took 134.819764137 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 12.0212669373 s Creating peak regions... Creating peak regions took 40.9672210217 s Estimating background... Estimating background took 160.526459932 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 9.33520197868 s Creating peak regions... Creating peak regions took 31.3387069702 s Estimating background... Estimating background took 137.824408054 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 8.73298120499 s Creating peak regions... Creating peak regions took 28.5688707829 s Estimating background... Estimating background took 105.145987034 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 33.5820980072 s Creating peak regions... Estimating background took 96.1872551441 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 26.5926308632 s Creating peak regions... Creating peak regions took 104.20138216 s Estimating background... Creating peak regions took 85.3778438568 s Estimating background... Estimating background took 304.034024 s Estimating background took 359.501445055 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.59127497673 s Creating peak regions... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 0.766118049622 s Estimating background... Reading data took 0.65691781044 s Creating peak regions... Estimating background took 0.436746120453 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0913870334625 s Creating peak regions... Creating peak regions took 0.371299028397 s Estimating background... Creating peak regions took 0.989197015762 s Estimating background... Estimating background took 0.545800924301 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0653488636017 s Creating peak regions... Creating peak regions took 0.256880044937 s Estimating background... Estimating background took 0.365998029709 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.095312833786 s Creating peak regions... Estimating background took 0.435465812683 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 0.357726097107 s Estimating background... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0670599937439 s Creating peak regions... Creating peak regions took 0.324476957321 s Estimating background... Estimating background took 0.463982820511 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0726580619812 s Creating peak regions... Estimating background took 0.425307035446 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 0.249078035355 s Estimating background... Estimating background took 0.40810418129 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0694329738617 s Creating peak regions... Creating peak regions took 0.350827932358 s Estimating background... Estimating background took 0.414937019348 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 30.0930960178 s Creating peak regions... Reading data took 36.3401548862 s Creating peak regions... Creating peak regions took 79.8632051945 s Estimating background... Creating peak regions took 116.62142086 s Estimating background... Estimating background took 266.59763813 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 29.8526601791 s Creating peak regions... Estimating background took 314.273761988 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 78.4153490067 s Estimating background... Reading data took 29.7431638241 s Creating peak regions... Creating peak regions took 96.0572800636 s Estimating background... Estimating background took 247.388391018 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 22.1825759411 s Creating peak regions... Creating peak regions took 71.095664978 s Estimating background... Estimating background took 301.309553862 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 31.2706139088 s Creating peak regions... Creating peak regions took 78.0658080578 s Estimating background... Estimating background took 215.670264006 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 4.12216901779 s Creating peak regions... Creating peak regions took 1.05678200722 s Estimating background... Estimating background took 0.686766862869 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0607759952545 s Creating peak regions... Creating peak regions took 0.0457708835602 s Estimating background... Estimating background took 0.475918054581 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0559060573578 s Creating peak regions... Creating peak regions took 0.00427007675171 s Estimating background... Estimating background took 0.481245040894 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 24.5348329544 s Creating peak regions... Creating peak regions took 73.9930579662 s Estimating background... Estimating background took 250.760334969 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.02003097534 s Creating peak regions... Creating peak regions took 0.399739980698 s Estimating background... Estimating background took 0.742336988449 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0617890357971 s Creating peak regions... Creating peak regions took 0.0479068756104 s Estimating background... Estimating background took 0.461006164551 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0574650764465 s Creating peak regions... Creating peak regions took 0.00406384468079 s Estimating background... Estimating background took 0.433950901031 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 28.1458070278 s Creating peak regions... Estimating background took 211.163532019 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.17228603363 s Creating peak regions... Creating peak regions took 0.354336977005 s Estimating background... Estimating background took 0.471095085144 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0760109424591 s Creating peak regions... Creating peak regions took 0.295147180557 s Estimating background... Estimating background took 0.503504037857 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0823340415955 s Creating peak regions... Creating peak regions took 0.288053035736 s Estimating background... Estimating background took 0.434970855713 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0672359466553 s Creating peak regions... Creating peak regions took 1.17769002914 s Estimating background... Estimating background took 0.459731817245 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Creating peak regions took 79.5891170502 s Estimating background... Reading data took 24.123762846 s Creating peak regions... Creating peak regions took 73.3204660416 s Estimating background... Estimating background took 245.655107975 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 3.761302948 s Creating peak regions... Creating peak regions took 0.762232065201 s Estimating background... Estimating background took 0.44811296463 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0743210315704 s Creating peak regions... Creating peak regions took 0.281043052673 s Estimating background... Estimating background took 0.449604988098 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0773370265961 s Creating peak regions... Creating peak regions took 0.284981012344 s Estimating background... Estimating background took 0.427367925644 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0639750957489 s Creating peak regions... Creating peak regions took 1.37238717079 s Estimating background... Estimating background took 0.446158885956 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 28.8228740692 s Creating peak regions... Estimating background took 226.921968937 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.1702899933 s Creating peak regions... Creating peak regions took 82.6007530689 s Estimating background... Creating peak regions took 63.8415420055 s Estimating background... Estimating background took 182.027173996 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.5177788734 s Creating peak regions... Estimating background took 279.821232796 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 20.9580769539 s Creating peak regions... Creating peak regions took 62.0669460297 s Estimating background... Creating peak regions took 73.413973093 s Estimating background... Estimating background took 181.548414946 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.8650970459 s Creating peak regions... Creating peak regions took 59.4195480347 s Estimating background... Estimating background took 209.795860052 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 23.2791349888 s Creating peak regions... Creating peak regions took 71.2596139908 s Estimating background... Estimating background took 175.665425062 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.13211393356 s Creating peak regions... Creating peak regions took 0.284040212631 s Estimating background... Estimating background took 0.961194038391 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.101062059402 s Creating peak regions... Creating peak regions took 0.0826120376587 s Estimating background... Estimating background took 0.53262591362 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0880641937256 s Creating peak regions... Creating peak regions took 0.0568079948425 s Estimating background... Estimating background took 0.464404821396 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.068864107132 s Creating peak regions... Creating peak regions took 0.0739939212799 s Estimating background... Estimating background took 0.490461111069 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0624401569366 s Creating peak regions... Creating peak regions took 0.0894601345062 s Estimating background... Estimating background took 0.48465681076 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0711460113525 s Creating peak regions... Creating peak regions took 0.0739569664001 s Estimating background... Estimating background took 0.46253991127 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0571510791779 s Creating peak regions... Creating peak regions took 0.0525391101837 s Estimating background... Estimating background took 0.45427107811 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.100180149078 s Creating peak regions... Creating peak regions took 0.0624849796295 s Estimating background... Estimating background took 0.570864915848 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.086483001709 s Creating peak regions... Creating peak regions took 0.0574750900269 s Estimating background... Estimating background took 0.477619171143 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0671739578247 s Creating peak regions... Creating peak regions took 0.0690679550171 s Estimating background... Estimating background took 0.447160005569 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0941951274872 s Creating peak regions... Creating peak regions took 0.125059127808 s Estimating background... Estimating background took 0.448395013809 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0645570755005 s Creating peak regions... Creating peak regions took 0.0730559825897 s Estimating background... Estimating background took 0.46622300148 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0619428157806 s Creating peak regions... Creating peak regions took 0.0624849796295 s Estimating background... Estimating background took 0.457827091217 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.20339512825 s Creating peak regions... Creating peak regions took 0.0759019851685 s Estimating background... Estimating background took 0.776098012924 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0915679931641 s Creating peak regions... Creating peak regions took 0.076541185379 s Estimating background... Estimating background took 0.466112136841 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0879168510437 s Creating peak regions... Creating peak regions took 0.0698850154877 s Estimating background... Estimating background took 0.464895963669 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.36159110069 s Creating peak regions... Creating peak regions took 0.0335309505463 s Estimating background... Estimating background took 0.962179899216 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.171933889389 s Creating peak regions... Creating peak regions took 0.0488238334656 s Estimating background... Estimating background took 0.549774885178 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.347850084305 s Creating peak regions... Creating peak regions took 0.0324540138245 s Estimating background... Estimating background took 0.671061992645 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.141891002655 s Creating peak regions... Creating peak regions took 0.0967829227448 s Estimating background... Estimating background took 0.555358886719 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0889391899109 s Creating peak regions... Creating peak regions took 0.0818998813629 s Estimating background... Estimating background took 0.437689065933 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.150448799133 s Creating peak regions... Creating peak regions took 0.0425469875336 s Estimating background... Estimating background took 0.516071081161 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.553462028503 s Creating peak regions... Creating peak regions took 0.21658205986 s Estimating background... Estimating background took 1.51145386696 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.4166121483 s Creating peak regions... Creating peak regions took 66.5397210121 s Estimating background... Estimating background took 225.076543093 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 24.3269507885 s Creating peak regions... Estimating background took 153.623405933 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.01101589203 s Creating peak regions... Creating peak regions took 0.600068092346 s Estimating background... Creating peak regions took 70.2669909 s Estimating background took 0.872198104858 s Estimating background... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.418999910355 s Creating peak regions... Creating peak regions took 24.5993590355 s Estimating background... Estimating background took 1.25398802757 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Estimating background took 199.25069499 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.00538897514 s Creating peak regions... Creating peak regions took 0.388738155365 s Estimating background... Estimating background took 0.934843063354 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0949280261993 s Creating peak regions... Creating peak regions took 0.0750598907471 s Estimating background... Estimating background took 0.524682998657 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0614619255066 s Creating peak regions... Creating peak regions took 0.0518260002136 s Estimating background... Estimating background took 0.424335002899 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0509901046753 s Creating peak regions... Creating peak regions took 0.0516970157623 s Estimating background... Estimating background took 0.388236999512 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.084450006485 s Creating peak regions... Creating peak regions took 0.0848021507263 s Estimating background... Estimating background took 0.412752866745 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0962820053101 s Creating peak regions... Creating peak regions took 0.0777781009674 s Estimating background... Estimating background took 0.576074838638 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.088714838028 s Creating peak regions... Creating peak regions took 0.0568668842316 s Estimating background... Estimating background took 0.431698083878 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0709400177002 s Creating peak regions... Creating peak regions took 0.0534989833832 s Estimating background... Estimating background took 0.495601892471 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0835831165314 s Creating peak regions... Creating peak regions took 0.0527670383453 s Estimating background... Estimating background took 0.417129039764 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0619328022003 s Creating peak regions... Creating peak regions took 0.062390089035 s Estimating background... Estimating background took 0.395331859589 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0914721488953 s Creating peak regions... Creating peak regions took 0.116578102112 s Estimating background... Estimating background took 0.391735076904 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.058963060379 s Creating peak regions... Creating peak regions took 0.0651090145111 s Estimating background... Estimating background took 0.41854596138 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0917918682098 s Creating peak regions... Creating peak regions took 0.0727639198303 s Estimating background... Estimating background took 0.425956964493 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.172333955765 s Creating peak regions... Creating peak regions took 0.0697069168091 s Estimating background... Estimating background took 0.722529888153 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0629229545593 s Creating peak regions... Creating peak regions took 0.0671281814575 s Estimating background... Estimating background took 0.414496898651 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.085706949234 s Creating peak regions... Creating peak regions took 0.0659210681915 s Estimating background... Estimating background took 0.415124177933 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 1.27432703972 s Creating peak regions... Creating peak regions took 0.0321910381317 s Estimating background... Estimating background took 0.90958404541 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.16562795639 s Creating peak regions... Creating peak regions took 0.0459020137787 s Estimating background... Estimating background took 0.513795852661 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.397208929062 s Creating peak regions... Creating peak regions took 0.0356001853943 s Estimating background... Estimating background took 0.59373998642 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.112003087997 s Creating peak regions... Creating peak regions took 0.0904269218445 s Estimating background... Estimating background took 0.49371099472 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.0823061466217 s Creating peak regions... Creating peak regions took 0.0564839839935 s Estimating background... Estimating background took 0.418071985245 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.147494792938 s Creating peak regions... Creating peak regions took 0.0410289764404 s Estimating background... Estimating background took 0.495444059372 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.482296943665 s Creating peak regions... Creating peak regions took 0.156591892242 s Estimating background... Estimating background took 1.41341090202 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 18.1637480259 s Creating peak regions... Creating peak regions took 67.8661291599 s Estimating background... Estimating background took 157.571978092 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.901226043701 s Creating peak regions... Creating peak regions took 0.565416812897 s Estimating background... Estimating background took 0.79734992981 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Reading data took 0.394042015076 s Creating peak regions... Creating peak regions took 24.0656709671 s Estimating background... Estimating background took 1.01191186905 s Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data... Processing control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam Reading in data...