============================================== 2018-06-06 16:27:12 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Tbx5_WT_CM-GSM2054329/aligned.36mers.unique.bam --out Tbx5_WT_CM-GSM2054329/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:28:14 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_NKO_CP-GSM2054337/aligned.36mers.unique.bam --out Gata4_NKO_CP-GSM2054337/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:28:19 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_WT_CM-GSM2054331/aligned.36mers.unique.bam --out Gata4_WT_CM-GSM2054331/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:28:24 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_DKO_CM-GSM2054341/aligned.36mers.unique.bam --out Gata4_DKO_CM-GSM2054341/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:28:36 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Tbx5_NKO_CP-GSM2054336/aligned.36mers.unique.bam --out Tbx5_NKO_CP-GSM2054336/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:30:52 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Tbx5_WT_CP-GSM2054326/aligned.36mers.unique.bam --out Tbx5_WT_CP-GSM2054326/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:31:04 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Nkx2-5_WT_CM-GSM2054330/aligned.36mers.unique.bam --out Nkx2-5_WT_CM-GSM2054330/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 18473861 HitCounts: 9.9919769E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 9 reads. The genome is segmented into 1971524 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 31524462 HitCounts: 7.6092949E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. The genome is segmented into 3323630 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 33285449 HitCounts: 1.0969021E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 13 reads. The genome is segmented into 3271113 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 14334 Insignificant: 503 Filtered: 2652 Finish binding event prediction: 2.8m Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 40371361 HitCounts: 9.7606388E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 15 reads. The genome is segmented into 3846345 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 46249291 HitCounts: 1.00014527E8 Original read count stats: _IP Bases: 31139630 HitCounts: 1.16112435E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 16 reads. The genome is segmented into 3690843 regions for analysis. The genome is segmented into 3472184 regions for analysis. Running with 4 threads ... Running with 4 threads ... ============================================== 2018-06-06 16:36:20 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_WT_CP-GSM2054328/aligned.36mers.unique.bam --out Gata4_WT_CP-GSM2054328/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:36:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_NKO_CM-GSM2054339/aligned.36mers.unique.bam --out Gata4_NKO_CM-GSM2054339/aligned.36mers.unique.GPS --------------------------- Events discovered Significant: 21982 Insignificant: 11385 Filtered: 83 Finish binding event prediction: 2.2m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 43652 Insignificant: 494 Filtered: 7026 Finish binding event prediction: 6.1m Refine read distribution from 2000 binding events. Running with 4 threads ... ============================================== 2018-06-06 16:39:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_TKO_CM-GSM2054335/aligned.36mers.unique.bam --out Gata4_TKO_CM-GSM2054335/aligned.36mers.unique.GPS --------------------------- Events discovered Significant: 18714 Insignificant: 425 Filtered: 1932 Finish binding event prediction: 3.5m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 33090 Insignificant: 458 Filtered: 6127 Finish binding event prediction: 6.2m Refine read distribution from 2000 binding events. Running with 4 threads ... Original read count stats: _IP Bases: 59965482 HitCounts: 1.22022433E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 21 reads. The genome is segmented into 3933530 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 10957449 HitCounts: 1.38059813E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. --------------------------- Events discovered Significant: 28241 Insignificant: 484 Filtered: 2809 Finish binding event prediction: 6.1m Refine read distribution from 2000 binding events. The genome is segmented into 700888 regions for analysis. Running with 4 threads ... Running with 4 threads ... --------------------------- Events discovered Significant: 20977 Insignificant: 7599 Filtered: 34 Finish binding event prediction: 2.6m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 36968240 HitCounts: 1.29131013E8 --------------------------- Events discovered Significant: 53661 Insignificant: 10309 Filtered: 53 Finish binding event prediction: 4.1m Refine read distribution from 2000 binding events. ============================================== 2018-06-06 16:42:47 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Nkx2-5_WT_CP-GSM2054327/aligned.36mers.unique.bam --out Nkx2-5_WT_CP-GSM2054327/aligned.36mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. --------------------------- Events discovered Significant: 43792 Insignificant: 5815 Filtered: 73 Finish binding event prediction: 2.9m Refine read distribution from 2000 binding events. The genome is segmented into 3561015 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 49887801 HitCounts: 1.29979242E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. The genome is segmented into 4021306 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 30350 Insignificant: 3789 Filtered: 58 Finish binding event prediction: 3.8m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 39065 Insignificant: 599 Filtered: 7815 Finish binding event prediction: 9.3m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 36073 Insignificant: 886 Filtered: 3342 Finish binding event prediction: 4.0m Running with 4 threads ... Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 41714 Insignificant: 12408 Filtered: 104 Finish binding event prediction: 1.4m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 35390265 HitCounts: 1.40843106E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. The genome is segmented into 3194189 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 32851 Insignificant: 482 Filtered: 5154 Finish binding event prediction: 7.1m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 71374 Insignificant: 13712 Filtered: 37 Finish binding event prediction: 6.0m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 29547 Insignificant: 388 Filtered: 5073 Finish binding event prediction: 8.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 43605 Insignificant: 6456 Filtered: 48 Finish binding event prediction: 4.4m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 70622 Insignificant: 999 Filtered: 16448 Finish binding event prediction: 16.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 43390 Insignificant: 5046 Filtered: 39 Finish binding event prediction: 5.5m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 93056 Insignificant: 6654 Filtered: 62 Finish binding event prediction: 10.5m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 92263 Insignificant: 663 Filtered: 7396 Finish binding event prediction: 42.1m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 42346 Insignificant: 1927 Filtered: 336 Finish binding event prediction: 10.6m Refine read distribution from 2000 binding events. ============================================== 2018-06-07 06:19:53 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_TKO_CP-GSM2054333/aligned.36mers.unique.bam --out Gata4_TKO_CP-GSM2054333/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 12655330 HitCounts: 1.35123972E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads. The genome is segmented into 759221 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 53007 Insignificant: 677 Filtered: 3491 Finish binding event prediction: 5.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 51183 Insignificant: 10432 Filtered: 148 Finish binding event prediction: 2.1m Refine read distribution from 2000 binding events. ============================================== 2018-06-07 11:20:47 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Gata4_TKO_CP-GSM2054333/aligned.36mers.unique.bam --out Gata4_TKO_CP-GSM2054333/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 12655330 HitCounts: 1.35123972E8 At Poisson p-value 1.0e-03, in a 301bp window, expect 8 reads. The genome is segmented into 759221 regions for analysis. Running with 5 threads ... --------------------------- Events discovered Significant: 53007 Insignificant: 677 Filtered: 3491 Finish binding event prediction: 4.9m Refine read distribution from 2000 binding events. Running with 5 threads ... --------------------------- Events discovered Significant: 51186 Insignificant: 10432 Filtered: 148 Finish binding event prediction: 1.7m Refine read distribution from 2000 binding events.