============================================== 2018-06-06 13:24:55 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadX_pH5.5_1-GSM1622467/GSM424491.30mers.unique.bam --out GadX_pH5.5_1-GSM1622467/GSM424491.30mers.unique.GPS ============================================== 2018-06-06 13:24:56 ============================================== 2018-06-06 13:24:56 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RpoS_pH5.5_2-GSM1633278/GSM424494.30mers.unique.bam --out RpoS_pH5.5_2-GSM1633278/GSM424494.30mers.unique.GPS Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadE_pH5.5_2-GSM1622464/GSM442537.30mers.unique.bam --out GadE_pH5.5_2-GSM1622464/GSM442537.30mers.unique.GPS ============================================== 2018-06-06 13:24:56 Original read count stats: _IP Bases: 915673 HitCounts: 2286373.0 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadE_pH5.5_1-GSM1622463/GSM424491.30mers.unique.bam --out GadE_pH5.5_1-GSM1622463/GSM424491.30mers.unique.GPS ============================================== 2018-06-06 13:24:56 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadW_pH5.5_2-GSM1622466/GSM424494.30mers.unique.bam --out GadW_pH5.5_2-GSM1622466/GSM424494.30mers.unique.GPS Original read count stats: _IP Bases: 1350637 HitCounts: 5311317.0 Original read count stats: _IP Bases: 1540168 HitCounts: 2275613.0 ============================================== 2018-06-06 13:24:57 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadX_pH5.5_2-GSM1622468/GSM442537.30mers.unique.bam --out GadX_pH5.5_2-GSM1622468/GSM442537.30mers.unique.GPS Original read count stats: _IP Bases: 1642165 HitCounts: 2492080.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 153 reads. Original read count stats: _IP Bases: 658522 HitCounts: 2510520.0 Original read count stats: _IP Bases: 1122297 HitCounts: 2511920.0 ============================================== 2018-06-06 13:24:57 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt GadW_pH5.5_1-GSM1622465/GSM424492.30mers.unique.bam --out GadW_pH5.5_1-GSM1622465/GSM424492.30mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 120 reads. The genome is segmented into 8222 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 202 reads. The genome is segmented into 8245 regions for analysis. Original read count stats: _IP Bases: 879568 HitCounts: 2869017.0 Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 219 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 174 reads. The genome is segmented into 8142 regions for analysis. Running with 4 threads ... The genome is segmented into 8098 regions for analysis. At Poisson p-value 1.0e-03, in a 301bp window, expect 351 reads. The genome is segmented into 8104 regions for analysis. At Poisson p-value 1.0e-03, in a 301bp window, expect 149 reads. Running with 4 threads ... Running with 4 threads ... The genome is segmented into 8158 regions for analysis. Running with 4 threads ... The genome is segmented into 8377 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 13:25:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RpoS_pH5.5_1-GSM1633277/GSM424492.30mers.unique.bam --out RpoS_pH5.5_1-GSM1633277/GSM424492.30mers.unique.GPS Original read count stats: _IP Bases: 1293514 HitCounts: 5525434.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 315 reads. The genome is segmented into 8341 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 33 Insignificant: 0 Filtered: 11 Finish binding event prediction: 57.1s Running with 4 threads ... --------------------------- Events discovered Significant: 115 Insignificant: 5 Filtered: 18 Finish binding event prediction: 1.3m Running with 4 threads ... --------------------------- Events discovered Significant: 33 Insignificant: 0 Filtered: 11 Finish binding event prediction: 22.9s --------------------------- Events discovered Significant: 48 Insignificant: 1 Filtered: 16 Finish binding event prediction: 1.5m Running with 4 threads ... --------------------------- Events discovered Significant: 60 Insignificant: 0 Filtered: 19 Finish binding event prediction: 1.5m Running with 4 threads ... --------------------------- Events discovered Significant: 80 Insignificant: 2 Filtered: 13 Finish binding event prediction: 1.7m Running with 4 threads ... --------------------------- Events discovered Significant: 115 Insignificant: 5 Filtered: 18 Finish binding event prediction: 25.1s --------------------------- Events discovered Significant: 48 Insignificant: 1 Filtered: 16 Finish binding event prediction: 15.1s --------------------------- Events discovered Significant: 4 Insignificant: 0 Filtered: 1 Finish binding event prediction: 1.8m Running with 4 threads ... --------------------------- Events discovered Significant: 3 Insignificant: 0 Filtered: 1 Finish binding event prediction: 2.0m Running with 4 threads ... --------------------------- Events discovered Significant: 60 Insignificant: 0 Filtered: 19 Finish binding event prediction: 28.3s --------------------------- Events discovered Significant: 80 Insignificant: 2 Filtered: 13 Finish binding event prediction: 21.1s --------------------------- Events discovered Significant: 4 Insignificant: 0 Filtered: 1 Finish binding event prediction: 34.1s --------------------------- Events discovered Significant: 265 Insignificant: 0 Filtered: 74 Finish binding event prediction: 2.3m Running with 4 threads ... --------------------------- Events discovered Significant: 3 Insignificant: 0 Filtered: 1 Finish binding event prediction: 38.1s --------------------------- Events discovered Significant: 265 Insignificant: 0 Filtered: 74 Finish binding event prediction: 20.1s