============================================== 2018-06-06 12:52:35 ============================================== 2018-06-06 12:52:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.bam --f BED --out Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.GPS Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.bam --f BED --out Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.GPS Original read count stats: _IP Bases: 447954 HitCounts: 505641.0 Original read count stats: _IP Bases: 470860 HitCounts: 508432.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 58 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 59 reads. The genome is segmented into 8277 regions for analysis. Running with 8 threads ... The genome is segmented into 8217 regions for analysis. Running with 8 threads ... ============================================== 2018-06-06 12:52:47 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.bam --f BED --out Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.GPS ============================================== 2018-06-06 12:52:47 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.bam --f BED --out Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.GPS Original read count stats: _IP Bases: 1844624 HitCounts: 2538060.0 Original read count stats: _IP Bases: 2193616 HitCounts: 3160541.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 283 reads. The genome is segmented into 8010 regions for analysis. Running with 8 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 228 reads. The genome is segmented into 8053 regions for analysis. Running with 8 threads ... ============================================== 2018-06-06 12:53:29 ============================================== 2018-06-06 12:53:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.bam --f BED --out Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.GPS Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.bam --f BED --out Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.GPS Original read count stats: _IP Bases: 470860 HitCounts: 508432.0 Original read count stats: _IP Bases: 447954 HitCounts: 505641.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 59 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 58 reads. The genome is segmented into 8217 regions for analysis. The genome is segmented into 8277 regions for analysis. Running with 4 threads ... Running with 4 threads ... ============================================== 2018-06-06 12:53:34 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.bam --f BED --out Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.GPS Original read count stats: _IP Bases: 1844624 HitCounts: 2538060.0 ============================================== 2018-06-06 12:53:35 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.bam --f BED --out Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.GPS Original read count stats: _IP Bases: 2193616 HitCounts: 3160541.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 228 reads. The genome is segmented into 8053 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 283 reads. The genome is segmented into 8010 regions for analysis. Running with 4 threads ... No valid binding event was found. Running with 4 threads ... No valid binding event was found. --------------------------- Events discovered Significant: 17 Insignificant: 0 Filtered: 5 Finish binding event prediction: 1.5m Running with 4 threads ... --------------------------- Events discovered Significant: 17 Insignificant: 0 Filtered: 5 Finish binding event prediction: 7.1s No valid binding event was found. Running with 4 threads ... No valid binding event was found. --------------------------- Events discovered Significant: 13 Insignificant: 0 Filtered: 4 Finish binding event prediction: 2.6m Running with 4 threads ... --------------------------- Events discovered Significant: 13 Insignificant: 0 Filtered: 4 Finish binding event prediction: 30.1s ============================================== 2018-06-06 13:04:09 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.bam --f BED --out Fur_with_Fe_2-ChIP-exo-GSM1326336/GSM442537.30mers.unique.GPS ============================================== 2018-06-06 13:04:09 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.bam --f BED --out Fur_with_DPD_2-ChIP-exo-GSM1326338/GSM424494.30mers.unique.GPS Original read count stats: _IP Bases: 447954 HitCounts: 505641.0 Original read count stats: _IP Bases: 470860 HitCounts: 508432.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 58 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 59 reads. The genome is segmented into 8277 regions for analysis. Running with 4 threads ... The genome is segmented into 8217 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 13:04:14 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.bam --f BED --out Fur_with_Fe_1-ChIP-exo-GSM1326335/GSM424491.30mers.unique.GPS Original read count stats: _IP Bases: 1844624 HitCounts: 2538060.0 ============================================== 2018-06-06 13:04:16 Options: --min 10 --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.bam --f BED --out Fur_with_DPD_1-ChIP-exo-GSM1326337/GSM424492.30mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 228 reads. Original read count stats: _IP Bases: 2193616 HitCounts: 3160541.0 The genome is segmented into 8053 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 283 reads. The genome is segmented into 8010 regions for analysis. Running with 4 threads ... No valid binding event was found. Running with 4 threads ... No valid binding event was found. --------------------------- Events discovered Significant: 17 Insignificant: 0 Filtered: 5 Finish binding event prediction: 1.3m Refine read distribution from 14 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 32 Insignificant: 0 Filtered: 0 Finish binding event prediction: 6.1s Refine read distribution from 28 binding events. No valid binding event was found. Running with 4 threads ... No valid binding event was found. --------------------------- Events discovered Significant: 13 Insignificant: 0 Filtered: 4 Finish binding event prediction: 3.2m Refine read distribution from 9 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 32 Insignificant: 0 Filtered: 0 Finish binding event prediction: 7.1s Refine read distribution from 28 binding events.