ENCFF001ULJ bed broadPeak peaks ENCSR000BLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRF-human ENCAB000ALE DNA see document see document False 2011-07-18 ENCODE 1 1 87568 Richard Myers, HAIB e602cafa0de928c4460de7049b3e5920 https://www.encodeproject.org/files/ENCFF001ULJ/@@download/ENCFF001ULJ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF001ULK bed broadPeak peaks ENCSR000BLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRF-human ENCAB000ALE DNA see document see document False 2011-07-18 ENCODE 2 1 33663 Richard Myers, HAIB c5f8ad23c60dd69bebf8a57349178118 https://www.encodeproject.org/files/ENCFF001ULK/@@download/ENCFF001ULK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth, severe bottlenecking ENCFF001VRL bed narrowPeak peaks ENCSR000DJX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-JUND-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1330450 Kevin White, UChicago 97c915f0ad3c41a65bf4d61458d07c9b https://www.encodeproject.org/files/ENCFF001VRL/@@download/ENCFF001VRL.bed.gz hg19 archived missing genetic modification characterization, low read depth, low read length missing derived_from ENCFF001UMF bed broadPeak peaks ENCSR000BKF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human ENCAB000AML DNA see document see document False 2011-07-18 ENCODE 1 1 160079 Richard Myers, HAIB d2048fc1ee2efded3b6b7e6cd3f1ce43 https://www.encodeproject.org/files/ENCFF001UMF/@@download/ENCFF001UMF.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001UMG bed broadPeak peaks ENCSR000BKF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human ENCAB000AML DNA see document see document False 2011-07-18 ENCODE 2 1 187196 Richard Myers, HAIB 46c375ad08192c162a48b9954ddfe3c9 https://www.encodeproject.org/files/ENCFF001UMG/@@download/ENCFF001UMG.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001UTC bed narrowPeak peaks ENCSR000DLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2011-03-17 ENCODE 687895 Vishwanath Iyer, UTA 286efa162c05702c48d2945e6062b946 https://www.encodeproject.org/files/ENCFF001UTC/@@download/ENCFF001UTC.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF001VRH bed narrowPeak peaks ENCSR000DKB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOS-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 489269 Kevin White, UChicago 2a6280868b59db45c28f4bd94ab6c9da https://www.encodeproject.org/files/ENCFF001VRH/@@download/ENCFF001VRH.bed.gz hg19 archived missing genetic modification characterization, low read depth, low read length missing derived_from ENCFF001UKV bed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human ENCAB000AKF DNA see document see document False 2011-07-18 ENCODE 1 1 790097 Richard Myers, HAIB 43594cd9473d6b3fdf24716a7218233d https://www.encodeproject.org/files/ENCFF001UKV/@@download/ENCFF001UKV.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001UKW bed broadPeak peaks ENCSR000BGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SPI1-human ENCAB000AKF DNA see document see document False 2011-07-18 ENCODE 2 1 369502 Richard Myers, HAIB b5883a071bb3179666ea345d29afd42e https://www.encodeproject.org/files/ENCFF001UKW/@@download/ENCFF001UKW.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001UKB bed broadPeak peaks ENCSR000BKM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGW DNA see document see document False 2011-07-18 ENCODE 1 1 442690 Richard Myers, HAIB 225185918723bead1dda3a122d6a3f9e https://www.encodeproject.org/files/ENCFF001UKB/@@download/ENCFF001UKB.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001UKC bed broadPeak peaks ENCSR000BKM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGW DNA see document see document False 2011-07-18 ENCODE 2 1 100100 Richard Myers, HAIB bad8ed68969025f83130e7a22950fbb6 https://www.encodeproject.org/files/ENCFF001UKC/@@download/ENCFF001UKC.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF001VOA bed narrowPeak peaks ENCSR000EHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000AJI DNA see document see document False 2011-10-29 ENCODE 153955 Michael Snyder, Stanford 133a4cc0e03b29a4e74f205c43065d81 https://www.encodeproject.org/files/ENCFF001VOA/@@download/ENCFF001VOA.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001ULF bed broadPeak peaks ENCSR000BKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000AKY DNA see document see document False 2011-07-18 ENCODE 1 1 31705 Richard Myers, HAIB 29393027b3b5b914b11b96034fa3dba0 https://www.encodeproject.org/files/ENCFF001ULF/@@download/ENCFF001ULF.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001ULG bed broadPeak peaks ENCSR000BKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000AKY DNA see document see document False 2011-07-18 ENCODE 2 1 90215 Richard Myers, HAIB ad851c73824ddfb8893b9f571c95c898 https://www.encodeproject.org/files/ENCFF001ULG/@@download/ENCFF001ULG.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001VRK bed narrowPeak peaks ENCSR000DJY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-JUNB-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 729683 Kevin White, UChicago 171e5b65d57537390e9e55accafb9afb https://www.encodeproject.org/files/ENCFF001VRK/@@download/ENCFF001VRK.bed.gz hg19 archived missing genetic modification characterization, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity missing derived_from insufficient read depth, severe bottlenecking ENCFF001VOB bed narrowPeak peaks ENCSR000EGY ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human ENCAB000AJN DNA see document see document False 2011-10-29 ENCODE 325346 Michael Snyder, Stanford 882d3a365a7eb97c3e086b11f094aa3a https://www.encodeproject.org/files/ENCFF001VOB/@@download/ENCFF001VOB.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from extremely low read depth ENCFF001UJI bed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human ENCAB000AFN DNA see document see document False 2012-09-10 ENCODE 1 1 114887 Richard Myers, HAIB e6bdf4296b24f043e3551037f7218c64 https://www.encodeproject.org/files/ENCFF001UJI/@@download/ENCFF001UJI.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001UJJ bed broadPeak peaks ENCSR000BSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB1-human ENCAB000AFN DNA see document see document False 2012-09-10 ENCODE 2 1 91869 Richard Myers, HAIB 53b3fcfde7c54c7df5b41bac49ef48a2 https://www.encodeproject.org/files/ENCFF001UJJ/@@download/ENCFF001UJJ.bed.gz hg19 released inconsistent platforms biological replicates with identical biosample, missing derived_from ENCFF001VMJ bed narrowPeak peaks ENCSR000EHD ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHD2-human ENCAB000AFG DNA see document see document False 2011-10-29 ENCODE 612152 Michael Snyder, Stanford 5b5757e2837959b2d31e866c7b1c9474 https://www.encodeproject.org/files/ENCFF001VMJ/@@download/ENCFF001VMJ.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001UKX bed broadPeak peaks ENCSR000BKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human ENCAB000AKG DNA see document see document False 2011-07-18 ENCODE 1 1 578351 Richard Myers, HAIB 59855e37b44e6bfa17dfb8419a9ebb13 https://www.encodeproject.org/files/ENCFF001UKX/@@download/ENCFF001UKX.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UKY bed broadPeak peaks ENCSR000BKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human ENCAB000AKG DNA see document see document False 2011-07-18 ENCODE 2 1 699758 Richard Myers, HAIB 42ae11ba2a9c020742d6b1d328664fd3 https://www.encodeproject.org/files/ENCFF001UKY/@@download/ENCFF001UKY.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001VNU bed narrowPeak peaks ENCSR000EFX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAZ-human ENCAB000AIM DNA see document see document False 2012-05-14 ENCODE 1390144 Michael Snyder, Stanford 571e908772418b3339c3915fa8b881da https://www.encodeproject.org/files/ENCFF001VNU/@@download/ENCFF001VNU.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001UTF bed narrowPeak peaks ENCSR000DLY ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-03-17 ENCODE 2943334 Vishwanath Iyer, UTA cce54edb5e2bd0631db9d67b6025055e https://www.encodeproject.org/files/ENCFF001UTF/@@download/ENCFF001UTF.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF001VMX bed narrowPeak peaks ENCSR000EGG ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human ENCAB000AFK DNA see document see document False 2012-05-14 ENCODE 1957921 Michael Snyder, Stanford 1efe7c07cb88530f416b34924fde2d3c https://www.encodeproject.org/files/ENCFF001VMX/@@download/ENCFF001VMX.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001VPQ bed narrowPeak peaks ENCSR000EFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human ENCAB000AMQ DNA see document see document False 2012-08-20 ENCODE 862896 Michael Snyder, Stanford 19d2b7ddc8ef34d60def3494ebc4311e https://www.encodeproject.org/files/ENCFF001VPQ/@@download/ENCFF001VPQ.bed.gz hg19 archived low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001UTE bed narrowPeak peaks ENCSR000DMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2012-08-27 ENCODE 1504839 Vishwanath Iyer, UTA 984abaf5e5a6fa22237906bc107644ac https://www.encodeproject.org/files/ENCFF001UTE/@@download/ENCFF001UTE.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF001VLZ bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human ENCAB000AEA DNA see document see document False 2012-05-14 ENCODE 429763 Michael Snyder, Stanford 42895329fc8db2bc4549f005a13e4d72 https://www.encodeproject.org/files/ENCFF001VLZ/@@download/ENCFF001VLZ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF107CCL bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human ENCAB000AEA DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF751ATX 4278578 ENCODE Processing Pipeline b256805c9fc102b8db586279a1c74419 https://www.encodeproject.org/files/ENCFF107CCL/@@download/ENCFF107CCL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF276CQA bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human ENCAB000AEA DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF710NTS, ENCFF751ATX, ENCFF866OHV 5238136 ENCODE Processing Pipeline c3e066aff3729d33b326745168c36d54 https://www.encodeproject.org/files/ENCFF276CQA/@@download/ENCFF276CQA.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF091TOR bed narrowPeak peaks ENCSR000EGD ChIP-seq EFO:0002067 K562 cell line Homo sapiens BACH1-human ENCAB000AEA DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF866OHV 4520836 ENCODE Processing Pipeline 5e14d520c61c7a53b23765785084f5de https://www.encodeproject.org/files/ENCFF091TOR/@@download/ENCFF091TOR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF183FOU bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2017-04-14 ENCODE 2 ENCFF666KPK, ENCFF929HAN 7199777 ENCODE Processing Pipeline bad146c1707938eeacedc3cfa7174b29 https://www.encodeproject.org/files/ENCFF183FOU/@@download/ENCFF183FOU.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF880AEL bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2017-04-14 ENCODE 1, 2 ENCFF309ASH, ENCFF666KPK, ENCFF929HAN 7310147 ENCODE Processing Pipeline 4ca0318ae43ad207a919bf225255991b https://www.encodeproject.org/files/ENCFF880AEL/@@download/ENCFF880AEL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF335AYY bed narrowPeak peaks ENCSR490LWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2017-04-14 ENCODE 1 ENCFF309ASH, ENCFF666KPK 7134776 ENCODE Processing Pipeline 7003592965f9b217550bb6548c2dd4f1 https://www.encodeproject.org/files/ENCFF335AYY/@@download/ENCFF335AYY.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF406YGF bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6755518 ENCODE Processing Pipeline a33ae1367f5f7bff47dd2433ef6bd489 https://www.encodeproject.org/files/ENCFF406YGF/@@download/ENCFF406YGF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF106AUG bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 7204811 ENCODE Processing Pipeline 7712c24501609fb0624096c2ac30e2d1 https://www.encodeproject.org/files/ENCFF106AUG/@@download/ENCFF106AUG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF619KMH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6785961 ENCODE Processing Pipeline 490afc63a5af3a432f36dcda78a69445 https://www.encodeproject.org/files/ENCFF619KMH/@@download/ENCFF619KMH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF313UKE bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF747PCD 6812372 ENCODE Processing Pipeline 85ba7f28c130cc201d5bef20fda3226d https://www.encodeproject.org/files/ENCFF313UKE/@@download/ENCFF313UKE.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF122FWH bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF558XOV 6858089 ENCODE Processing Pipeline 9cd613d51d776b7ba4ac1c3f13831780 https://www.encodeproject.org/files/ENCFF122FWH/@@download/ENCFF122FWH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF240NFK bed narrowPeak peaks ENCSR486IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ESRRA-human ENCAB000AGE DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF558XOV, ENCFF581ZJL, ENCFF747PCD 7214480 ENCODE Processing Pipeline 511fdf36f68b74570878b1c8145fa532 https://www.encodeproject.org/files/ENCFF240NFK/@@download/ENCFF240NFK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF001VMV bed narrowPeak peaks ENCSR000FAG ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 79114 Sherman Weissman, Yale 17c3632f80445408b56fef214358cd6a https://www.encodeproject.org/files/ENCFF001VMV/@@download/ENCFF001VMV.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF347OPC bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human ENCAB793TME DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF662JKA 6464701 ENCODE Processing Pipeline f86de4c42db0714237a30fc9780fad85 https://www.encodeproject.org/files/ENCFF347OPC/@@download/ENCFF347OPC.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF048BXR bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human ENCAB793TME DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF139XLL, ENCFF581ZJL, ENCFF662JKA 7122321 ENCODE Processing Pipeline 90d0b0bde2c91fd0e4f211762ca4d2cd https://www.encodeproject.org/files/ENCFF048BXR/@@download/ENCFF048BXR.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF605EKW bed narrowPeak peaks ENCSR119ULQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA4-human ENCAB793TME DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF139XLL 6259856 ENCODE Processing Pipeline 71de1c7e0910843bf3eee383285b2c79 https://www.encodeproject.org/files/ENCFF605EKW/@@download/ENCFF605EKW.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF568CWO bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human ENCAB728YTO DNA False 2017-11-08 ENCODE 3 ENCFF171NJW, ENCFF173TQI 6811528 ENCODE Processing Pipeline 394c2889bba7b199b817b99f453007ad https://www.encodeproject.org/files/ENCFF568CWO/@@download/ENCFF568CWO.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF531FSD bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human ENCAB728YTO DNA False 2017-11-08 ENCODE 4 ENCFF171NJW, ENCFF675RQO 6707104 ENCODE Processing Pipeline a7ea640e0c700fecb19d3643ff22f845 https://www.encodeproject.org/files/ENCFF531FSD/@@download/ENCFF531FSD.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF349KFP bed narrowPeak peaks ENCSR189YMA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-VEZF1-human ENCAB728YTO DNA False 2017-11-08 ENCODE 3, 4 ENCFF171NJW, ENCFF173TQI, ENCFF675RQO 7099164 ENCODE Processing Pipeline 2d7be435e63707931b45a1add736ed39 https://www.encodeproject.org/files/ENCFF349KFP/@@download/ENCFF349KFP.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF101SDV bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB311QPT DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF167RGS, ENCFF581ZJL, ENCFF689KTQ 7178040 ENCODE Processing Pipeline 0de4c28ddb2b43817cc84236be2e66a4 https://www.encodeproject.org/files/ENCFF101SDV/@@download/ENCFF101SDV.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF524RDY bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB311QPT DNA False 2016-06-14 ENCODE 1 ENCFF167RGS, ENCFF581ZJL 6933055 ENCODE Processing Pipeline 1c3305645ee0244fa7084996518070cd https://www.encodeproject.org/files/ENCFF524RDY/@@download/ENCFF524RDY.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF333ULN bed narrowPeak peaks ENCSR004GKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB311QPT DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF689KTQ 7069411 ENCODE Processing Pipeline 038820ec11df6d6781de8da33e8ea384 https://www.encodeproject.org/files/ENCFF333ULN/@@download/ENCFF333ULN.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF658SVX bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human ENCAB298WVV DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF203ABU, ENCFF705ZEH 5319820 ENCODE Processing Pipeline 27097323d9c4e72c0cfc64ffabfee66d https://www.encodeproject.org/files/ENCFF658SVX/@@download/ENCFF658SVX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF948OFI bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human ENCAB298WVV DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF222PVF, ENCFF477SGV 5295909 ENCODE Processing Pipeline edab1ed4566b4314cc23b829e56f8d33 https://www.encodeproject.org/files/ENCFF948OFI/@@download/ENCFF948OFI.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF473NOQ bed narrowPeak peaks ENCSR690GUG ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF1-human ENCAB298WVV DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF203ABU, ENCFF222PVF, ENCFF477SGV, ENCFF705ZEH 6716591 ENCODE Processing Pipeline 48a613334fcd7390397d1898e33b8ca9 https://www.encodeproject.org/files/ENCFF473NOQ/@@download/ENCFF473NOQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF091SVZ bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human ENCAB255TQH DNA False 2017-09-28 ENCODE 2 ENCFF152YRC, ENCFF262CJE, ENCFF506DFV 6856226 ENCODE Processing Pipeline 4e7a4ded12661478c26f98ae7f2cf478 https://www.encodeproject.org/files/ENCFF091SVZ/@@download/ENCFF091SVZ.bed.gz hg19 released missing control alignments ENCFF618ORM bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human ENCAB255TQH DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 6695600 ENCODE Processing Pipeline fd82e2ffab70d020916fc31f1e944d4d https://www.encodeproject.org/files/ENCFF618ORM/@@download/ENCFF618ORM.bed.gz hg19 released missing control alignments ENCFF797ZNP bed narrowPeak peaks ENCSR160QYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2A-human ENCAB255TQH DNA False 2017-09-28 ENCODE 1, 2 ENCFF152YRC, ENCFF262CJE, ENCFF279CMU, ENCFF506DFV 7251282 ENCODE Processing Pipeline c8b487a5b3ee95432156f38f33682a29 https://www.encodeproject.org/files/ENCFF797ZNP/@@download/ENCFF797ZNP.bed.gz hg19 released missing control alignments ENCFF001SYU bed broadPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human ENCAB000AEU DNA see document see document False 2012-08-06 ENCODE 407277 Bradley Bernstein, Broad b420e272f8f4d93943a941c44f90905f https://www.encodeproject.org/files/ENCFF001SYU/@@download/ENCFF001SYU.bed.gz hg19 archived control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing derived_from ENCFF305PBB bed narrowPeak peaks ENCSR000ATT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREBBP-human ENCAB000AEU DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF998RRV 4040715 ENCODE Processing Pipeline 7fab496ccb08db39f132bd14491389ff https://www.encodeproject.org/files/ENCFF305PBB/@@download/ENCFF305PBB.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length ENCFF001SZB bed broadPeak peaks ENCSR000AKO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AXY DNA see document see document False 2011-02-10 ENCODE 1323565 Bradley Bernstein, Broad 905a8320cd3c7e37a4244360f8e34306 https://www.encodeproject.org/files/ENCFF001SZB/@@download/ENCFF001SZB.bed.gz hg19 released mixed read lengths, control low read depth, inconsistent platforms, mild to moderate bottlenecking, low read length missing derived_from insufficient read depth ENCFF001TAC bed broadPeak peaks ENCSR000AUA ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA see document see document False 2012-08-06 ENCODE 407818 Bradley Bernstein, Broad 748b00b82b947f366e0c275d730203a4 https://www.encodeproject.org/files/ENCFF001TAC/@@download/ENCFF001TAC.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length missing raw data in replicate, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF001VOV bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 22633 Michael Snyder, Stanford 486e77ed088efb5ef805a0510c9b024b https://www.encodeproject.org/files/ENCFF001VOV/@@download/ENCFF001VOV.bed.gz hg19 archived mixed read lengths biological replicates with identical biosample, missing derived_from insufficient replicate concordance, insufficient read length, control insufficient read depth, insufficient read depth ENCFF763YXP bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF440UUU 2052776 ENCODE Processing Pipeline 291f711da6540d9f17763904a9aa0e40 https://www.encodeproject.org/files/ENCFF763YXP/@@download/ENCFF763YXP.bed.gz hg19 released mixed read lengths biological replicates with identical biosample insufficient replicate concordance, insufficient read length, control insufficient read depth, insufficient read depth ENCFF956SIV bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF440UUU, ENCFF739PBB 158227 ENCODE Processing Pipeline ecad71f4993868d696e98ca101678310 https://www.encodeproject.org/files/ENCFF956SIV/@@download/ENCFF956SIV.bed.gz hg19 released mixed read lengths biological replicates with identical biosample insufficient replicate concordance, insufficient read length, control insufficient read depth, insufficient read depth ENCFF585NXD bed narrowPeak peaks ENCSR000EHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF739PBB 2492541 ENCODE Processing Pipeline fa09b91df9b9e0ad5cd4892b4d9449f9 https://www.encodeproject.org/files/ENCFF585NXD/@@download/ENCFF585NXD.bed.gz hg19 released mixed read lengths biological replicates with identical biosample insufficient replicate concordance, insufficient read length, control insufficient read depth, insufficient read depth ENCFF001UJE bed broadPeak peaks ENCSR000BRQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2012-02-29 ENCODE 1 1 451843 Richard Myers, HAIB e7dceda33860c95b624e20d4dd2ef1a2 https://www.encodeproject.org/files/ENCFF001UJE/@@download/ENCFF001UJE.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from extremely low read depth ENCFF001UJF bed broadPeak peaks ENCSR000BRQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2012-02-29 ENCODE 2 1 203262 Richard Myers, HAIB a079e6273be430fa84aebff44799dd3e https://www.encodeproject.org/files/ENCFF001UJF/@@download/ENCFF001UJF.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from extremely low read depth ENCFF001VOQ bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2011-10-29 ENCODE 59113 Peggy Farnham, USC 53b97f9d370e39582467b6d40f7512e7 https://www.encodeproject.org/files/ENCFF001VOQ/@@download/ENCFF001VOQ.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF463JJS bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF247BJO 5345657 ENCODE Processing Pipeline 3431b39818c317d9293ded2e754c7f64 https://www.encodeproject.org/files/ENCFF463JJS/@@download/ENCFF463JJS.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF269JVH bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF210CIB 3458692 ENCODE Processing Pipeline a8f02fb68b875e901a7c8caea5dd4008 https://www.encodeproject.org/files/ENCFF269JVH/@@download/ENCFF269JVH.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF445HEP bed narrowPeak peaks ENCSR000EWI ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF210CIB, ENCFF247BJO 5768659 ENCODE Processing Pipeline 936c0f9544eb861a2629a69dacdac214 https://www.encodeproject.org/files/ENCFF445HEP/@@download/ENCFF445HEP.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF420MBN bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB060JJI DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH 7005846 ENCODE Processing Pipeline 9105af60d97e15745da580d902c1dbe1 https://www.encodeproject.org/files/ENCFF420MBN/@@download/ENCFF420MBN.bed.gz hg19 released missing control alignments ENCFF980UAQ bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB060JJI DNA False 2016-04-21 ENCODE 3 ENCFF581ZJL, ENCFF967XYK 6886863 ENCODE Processing Pipeline 4451bcb37eb9571933343a709a60e8de https://www.encodeproject.org/files/ENCFF980UAQ/@@download/ENCFF980UAQ.bed.gz hg19 released missing control alignments ENCFF186JNG bed narrowPeak peaks ENCSR385AHH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB060JJI DNA False 2016-04-21 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF951UTH, ENCFF967XYK 7260274 ENCODE Processing Pipeline 86c6856a23182b2bae130377bc710876 https://www.encodeproject.org/files/ENCFF186JNG/@@download/ENCFF186JNG.bed.gz hg19 released missing control alignments ENCFF763UFC bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human ENCAB461XEH DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF367UIT 7147888 ENCODE Processing Pipeline 50903e83e12dbeb447c95ecffa403841 https://www.encodeproject.org/files/ENCFF763UFC/@@download/ENCFF763UFC.bed.gz hg19 released ENCFF279NYK bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human ENCAB461XEH DNA False 2016-09-01 ENCODE 1 ENCFF367HYB, ENCFF581ZJL 7069487 ENCODE Processing Pipeline b61f8701b5f98bac19965b927a3da8d4 https://www.encodeproject.org/files/ENCFF279NYK/@@download/ENCFF279NYK.bed.gz hg19 released ENCFF636VOC bed narrowPeak peaks ENCSR808AKZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCOR-human ENCAB461XEH DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF367HYB, ENCFF367UIT, ENCFF581ZJL 7198879 ENCODE Processing Pipeline fe4dadc48f6e8f5c198831a8a6a8eb47 https://www.encodeproject.org/files/ENCFF636VOC/@@download/ENCFF636VOC.bed.gz hg19 released ENCFF286BGV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB658SAJ DNA False 2016-10-31 ENCODE 1 ENCFF425DVG, ENCFF581ZJL 6176129 ENCODE Processing Pipeline c9a3e2a7d340aab9c112f48ab6fb8c0c https://www.encodeproject.org/files/ENCFF286BGV/@@download/ENCFF286BGV.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF191CDX bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB658SAJ DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF366IHT, ENCFF425DVG, ENCFF581ZJL 7039698 ENCODE Processing Pipeline 40bc967ea9077eb3884225f23973c5b5 https://www.encodeproject.org/files/ENCFF191CDX/@@download/ENCFF191CDX.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF010VLV bed narrowPeak peaks ENCSR038RGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB658SAJ DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF366IHT 6282170 ENCODE Processing Pipeline eafd607c9835055ae6d129e2c51038f4 https://www.encodeproject.org/files/ENCFF010VLV/@@download/ENCFF010VLV.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF903FBL bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF139MVO, ENCFF284BJY, ENCFF356LRY 7079020 ENCODE Processing Pipeline 5adc0944ca4d0fb5a20e8c6463262515 https://www.encodeproject.org/files/ENCFF903FBL/@@download/ENCFF903FBL.bed.gz hg19 released missing genetic modification characterization ENCFF233FOV bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF139MVO, ENCFF284BJY 6429901 ENCODE Processing Pipeline 17babe61f65b3c87ed973fd946ef985d https://www.encodeproject.org/files/ENCFF233FOV/@@download/ENCFF233FOV.bed.gz hg19 released missing genetic modification characterization ENCFF188UYW bed narrowPeak peaks ENCSR737UST ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF139MVO, ENCFF356LRY 6563813 ENCODE Processing Pipeline 152f4cc7ab9826b2bd18f6611a240141 https://www.encodeproject.org/files/ENCFF188UYW/@@download/ENCFF188UYW.bed.gz hg19 released missing genetic modification characterization ENCFF001ULP bed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human ENCAB000ALN DNA see document see document False 2011-07-18 ENCODE 1 1 35779 Richard Myers, HAIB 0ac5cef0b3bc1b0497ea21e7eb8da507 https://www.encodeproject.org/files/ENCFF001ULP/@@download/ENCFF001ULP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001ULQ bed broadPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human ENCAB000ALN DNA see document see document False 2011-07-18 ENCODE 2 1 40467 Richard Myers, HAIB f79b1ab3b2c7b388a852daf0bac68a81 https://www.encodeproject.org/files/ENCFF001ULQ/@@download/ENCFF001ULQ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF070BNL bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human ENCAB000ALN DNA see document see document False 2011-07-18 ENCODE 1 ENCFF335FQW, ENCFF750MIM 96930 ENCODE Processing Pipeline 85c6f61e40a3843197f460a194cf9805 https://www.encodeproject.org/files/ENCFF070BNL/@@download/ENCFF070BNL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF611EGN bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human ENCAB000ALN DNA see document see document False 2011-07-18 ENCODE 2 ENCFF085YNW, ENCFF750MIM 199621 ENCODE Processing Pipeline 1185acb76f195bd1bc72cceeba189253 https://www.encodeproject.org/files/ENCFF611EGN/@@download/ENCFF611EGN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF271GZS bed narrowPeak peaks ENCSR000BNM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF7-human ENCAB000ALN DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF085YNW, ENCFF335FQW, ENCFF750MIM 4757767 ENCODE Processing Pipeline acaa0efc85fefc9cb1fab6f3fbe41280 https://www.encodeproject.org/files/ENCFF271GZS/@@download/ENCFF271GZS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF057VLD bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB870XRH DNA False 2017-11-14 ENCODE 2 ENCFF160VXC, ENCFF502AYE, ENCFF834TUP 6954033 ENCODE Processing Pipeline ede7f808e6c666a30bbc245591fb017f https://www.encodeproject.org/files/ENCFF057VLD/@@download/ENCFF057VLD.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO ENCFF529YAS bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB870XRH DNA False 2017-11-14 ENCODE 2, 3 ENCFF160VXC, ENCFF497YCG, ENCFF502AYE, ENCFF834TUP 7196022 ENCODE Processing Pipeline 45a9078258541a3eece74e8c63912fda https://www.encodeproject.org/files/ENCFF529YAS/@@download/ENCFF529YAS.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO ENCFF242KBX bed narrowPeak peaks ENCSR660RNO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB870XRH DNA False 2017-11-14 ENCODE 3 ENCFF160VXC, ENCFF497YCG 6376227 ENCODE Processing Pipeline fedd267cb3d639ea64d80d7e452d586c https://www.encodeproject.org/files/ENCFF242KBX/@@download/ENCFF242KBX.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO ENCFF707CDO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human ENCAB373DVF DNA False 2016-08-01 ENCODE 2 ENCFF051LWI, ENCFF295CQL 7127888 ENCODE Processing Pipeline 4dcaba83d4d91c73c9e927c32207b2d4 https://www.encodeproject.org/files/ENCFF707CDO/@@download/ENCFF707CDO.bed.gz hg19 released ENCFF361LXO bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human ENCAB373DVF DNA False 2016-08-01 ENCODE 1, 2 ENCFF051LWI, ENCFF295CQL, ENCFF581ZJL, ENCFF861YTF 7247839 ENCODE Processing Pipeline 7a23ac37a95706e8f7e5a1fa01ae85c0 https://www.encodeproject.org/files/ENCFF361LXO/@@download/ENCFF361LXO.bed.gz hg19 released ENCFF727WJU bed narrowPeak peaks ENCSR237VLT ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB40-human ENCAB373DVF DNA False 2016-08-01 ENCODE 1 ENCFF581ZJL, ENCFF861YTF 7063882 ENCODE Processing Pipeline 12166be600da69a05f8b8c0a2b48599d https://www.encodeproject.org/files/ENCFF727WJU/@@download/ENCFF727WJU.bed.gz hg19 released ENCFF127MAS bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB440APL DNA False 2016-07-28 ENCODE 1, 2 ENCFF030VNO, ENCFF051LWI, ENCFF293FTN, ENCFF581ZJL 7248174 ENCODE Processing Pipeline efa71e3f661982c3607f80b53f2dfe80 https://www.encodeproject.org/files/ENCFF127MAS/@@download/ENCFF127MAS.bed.gz hg19 released ENCFF856IOQ bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB440APL DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF293FTN 7007064 ENCODE Processing Pipeline ae25957c3193462c602438160b8c2ba7 https://www.encodeproject.org/files/ENCFF856IOQ/@@download/ENCFF856IOQ.bed.gz hg19 released ENCFF816EGL bed narrowPeak peaks ENCSR907MZR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB440APL DNA False 2016-07-28 ENCODE 1 ENCFF030VNO, ENCFF581ZJL 7132065 ENCODE Processing Pipeline 0680be1dc095e0e4b488f230d0f6608d https://www.encodeproject.org/files/ENCFF816EGL/@@download/ENCFF816EGL.bed.gz hg19 released ENCFF860KMP bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human ENCAB724OQW DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF853EMP 6406002 ENCODE Processing Pipeline d30d79c50d0e12b2f2743ff47d3af71d https://www.encodeproject.org/files/ENCFF860KMP/@@download/ENCFF860KMP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF222PPL bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human ENCAB724OQW DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF989OSX 6412170 ENCODE Processing Pipeline f703f936ce9333620ca52565db1f4a11 https://www.encodeproject.org/files/ENCFF222PPL/@@download/ENCFF222PPL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF786MKH bed narrowPeak peaks ENCSR091JXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HES1-human ENCAB724OQW DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF853EMP, ENCFF989OSX 7165721 ENCODE Processing Pipeline f5b2581e60dd754101ff2cf93317003e https://www.encodeproject.org/files/ENCFF786MKH/@@download/ENCFF786MKH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF830SMA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF675KUA, ENCFF929AIJ 6484837 ENCODE Processing Pipeline 9f337526edf3461d6521791dee0f24c5 https://www.encodeproject.org/files/ENCFF830SMA/@@download/ENCFF830SMA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF255LGM bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF630NYB, ENCFF675KUA, ENCFF929AIJ 7130529 ENCODE Processing Pipeline 6e83c1b938f397820dbf794db89f4c4d https://www.encodeproject.org/files/ENCFF255LGM/@@download/ENCFF255LGM.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF842XXA bed narrowPeak peaks ENCSR550HCT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF630NYB, ENCFF675KUA 6676264 ENCODE Processing Pipeline f94f0bcb0b973bf3126547a8d5a59a2e https://www.encodeproject.org/files/ENCFF842XXA/@@download/ENCFF842XXA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF935RWY bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human ENCAB000BQP DNA False 2016-06-28 ENCODE 1 ENCFF023YMB, ENCFF388AJM 6270021 ENCODE Processing Pipeline dbc92775e620277e3b12ed79fdb72198 https://www.encodeproject.org/files/ENCFF935RWY/@@download/ENCFF935RWY.bed.gz hg19 released low read depth ENCFF939VGO bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human ENCAB000BQP DNA False 2016-06-28 ENCODE 3 ENCFF057WPZ, ENCFF092ACZ 5334856 ENCODE Processing Pipeline eff79c853adca22eacf0d0f889aabc8d https://www.encodeproject.org/files/ENCFF939VGO/@@download/ENCFF939VGO.bed.gz hg19 released low read depth ENCFF649MHK bed narrowPeak peaks ENCSR221GAN ChIP-seq EFO:0002067 K562 cell line Homo sapiens MBD2-human ENCAB000BQP DNA False 2016-06-28 ENCODE 1, 3 ENCFF023YMB, ENCFF057WPZ, ENCFF092ACZ, ENCFF388AJM 6815016 ENCODE Processing Pipeline 1e97055946a0cdc1b6155530135a8074 https://www.encodeproject.org/files/ENCFF649MHK/@@download/ENCFF649MHK.bed.gz hg19 released low read depth ENCFF439JKZ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human ENCAB000BFN DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF021SBT, ENCFF152TEK 5434497 ENCODE Processing Pipeline 59a464a69517252724b7eb1cdfa9d73d https://www.encodeproject.org/files/ENCFF439JKZ/@@download/ENCFF439JKZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF409JZE bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human ENCAB000BFN DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF021SBT, ENCFF152TEK, ENCFF221JFQ, ENCFF584SKU 6888183 ENCODE Processing Pipeline 3da0ba679e03f44204ce0c1291d1f4ed https://www.encodeproject.org/files/ENCFF409JZE/@@download/ENCFF409JZE.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF037LWJ bed narrowPeak peaks ENCSR014RCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPK-human ENCAB000BFN DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF221JFQ, ENCFF584SKU 5373755 ENCODE Processing Pipeline 7debde54ef88e8ffa439ba7ffd770114 https://www.encodeproject.org/files/ENCFF037LWJ/@@download/ENCFF037LWJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF189YFO bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human ENCAB591RYH DNA False 2016-12-19 ENCODE 2 ENCFF207ILO, ENCFF834TUP 7142686 ENCODE Processing Pipeline 5fba234db01600332db1a33dc36a687d https://www.encodeproject.org/files/ENCFF189YFO/@@download/ENCFF189YFO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF230QTS bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human ENCAB591RYH DNA False 2016-12-19 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF981ZOJ 7251235 ENCODE Processing Pipeline ac03467c13d09b0c060ac98caf91fb99 https://www.encodeproject.org/files/ENCFF230QTS/@@download/ENCFF230QTS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF207RUE bed narrowPeak peaks ENCSR710WLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MGA-human ENCAB591RYH DNA False 2016-12-19 ENCODE 1, 2 ENCFF160VXC, ENCFF207ILO, ENCFF834TUP, ENCFF981ZOJ 7309769 ENCODE Processing Pipeline 98bfaf46f1594d56e6b8d44ada364991 https://www.encodeproject.org/files/ENCFF207RUE/@@download/ENCFF207RUE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF001VMG bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human ENCAB000AFA DNA see document see document False 2012-08-20 ENCODE 896817 Michael Snyder, Stanford d20fccbb76459a4b2a02a3814b92bdd7 https://www.encodeproject.org/files/ENCFF001VMG/@@download/ENCFF001VMG.bed.gz hg19 archived inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF725FYI bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human ENCAB000AFA DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF353HYR, ENCFF377MEH, ENCFF710NTS 5946943 ENCODE Processing Pipeline 61e0c97c0c8aad5b5b0d5661bd427966 https://www.encodeproject.org/files/ENCFF725FYI/@@download/ENCFF725FYI.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF675GZY bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human ENCAB000AFA DNA see document see document False 2012-08-20 ENCODE 1 ENCFF353HYR, ENCFF710NTS 4975729 ENCODE Processing Pipeline fdd0e953af4503ea9b37a6a43e52ce4c https://www.encodeproject.org/files/ENCFF675GZY/@@download/ENCFF675GZY.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF599SPU bed narrowPeak peaks ENCSR000EFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CUX1-human ENCAB000AFA DNA see document see document False 2012-08-20 ENCODE 2 ENCFF377MEH, ENCFF710NTS 5291266 ENCODE Processing Pipeline cb06ef30f1d113827a464623c4fefc29 https://www.encodeproject.org/files/ENCFF599SPU/@@download/ENCFF599SPU.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF023VOJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB076EMA DNA False 2016-04-22 ENCODE 1 ENCFF419BCJ, ENCFF581ZJL 7181376 ENCODE Processing Pipeline 3083a486dc1b0b3129c6eff438f6bf88 https://www.encodeproject.org/files/ENCFF023VOJ/@@download/ENCFF023VOJ.bed.gz hg19 released missing control alignments ENCFF577FLU bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB076EMA DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF275MTH, ENCFF419BCJ, ENCFF581ZJL 7073849 ENCODE Processing Pipeline 79d74b742addce40d1078d853ff2a677 https://www.encodeproject.org/files/ENCFF577FLU/@@download/ENCFF577FLU.bed.gz hg19 released missing control alignments ENCFF994IZJ bed narrowPeak peaks ENCSR715CCR ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB076EMA DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF275MTH 7191587 ENCODE Processing Pipeline 36d1b5a86c8378751f9dce955bef0765 https://www.encodeproject.org/files/ENCFF994IZJ/@@download/ENCFF994IZJ.bed.gz hg19 released missing control alignments ENCFF648RFW bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human ENCAB083GDM DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF084EMC, ENCFF705ZEH 4953053 ENCODE Processing Pipeline 003ea0a0ffa5b64321cb1dd310dd88df https://www.encodeproject.org/files/ENCFF648RFW/@@download/ENCFF648RFW.bed.gz hg19 released low read depth, low read length ENCFF036VGX bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human ENCAB083GDM DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF173YSU, ENCFF477SGV 5188554 ENCODE Processing Pipeline 29ae6be478f6d1e855a650659b303726 https://www.encodeproject.org/files/ENCFF036VGX/@@download/ENCFF036VGX.bed.gz hg19 released low read depth, low read length ENCFF788AWO bed narrowPeak peaks ENCSR296MXW ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPUL1-human ENCAB083GDM DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF084EMC, ENCFF173YSU, ENCFF477SGV, ENCFF705ZEH 6582763 ENCODE Processing Pipeline 79cec121b6dc893b0ff6bbbb0ead043c https://www.encodeproject.org/files/ENCFF788AWO/@@download/ENCFF788AWO.bed.gz hg19 released low read depth, low read length ENCFF001VNR bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human ENCAB000AIJ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSW, ENCFF000YSY 1395340 Michael Snyder, Stanford a1c38b95f48a0d8af3b086c6d817893b https://www.encodeproject.org/files/ENCFF001VNR/@@download/ENCFF001VNR.bed.gz hg19 archived inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF660EKS bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human ENCAB000AIJ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF433CEB, ENCFF560QPO, ENCFF710NTS 6291523 ENCODE Processing Pipeline 9ec9d8d02dedaae9c7d7129a641d1e45 https://www.encodeproject.org/files/ENCFF660EKS/@@download/ENCFF660EKS.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF887IBL bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human ENCAB000AIJ DNA see document see document False 2011-10-29 ENCODE 2 ENCFF560QPO, ENCFF710NTS 5347011 ENCODE Processing Pipeline 073cbf8f91573c530d13ce12e03197d0 https://www.encodeproject.org/files/ENCFF887IBL/@@download/ENCFF887IBL.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF072BMK bed narrowPeak peaks ENCSR000EGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFK-human ENCAB000AIJ DNA see document see document False 2011-10-29 ENCODE 1 ENCFF433CEB, ENCFF710NTS 5075327 ENCODE Processing Pipeline baca76bc8dd54ade1118dfe4cbaefb37 https://www.encodeproject.org/files/ENCFF072BMK/@@download/ENCFF072BMK.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF385LTD bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB173GGB DNA False 2016-08-05 ENCODE 2 ENCFF051LWI, ENCFF606HVQ 7102147 ENCODE Processing Pipeline fd18be84207ef924b9342b60af421079 https://www.encodeproject.org/files/ENCFF385LTD/@@download/ENCFF385LTD.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF409HKO bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB173GGB DNA False 2016-08-05 ENCODE 1 ENCFF581ZJL, ENCFF737QLL 7041480 ENCODE Processing Pipeline 03f4452079d0de2dd45f193dde177e9a https://www.encodeproject.org/files/ENCFF409HKO/@@download/ENCFF409HKO.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF264KUV bed narrowPeak peaks ENCSR197ALX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB173GGB DNA False 2016-08-05 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF606HVQ, ENCFF737QLL 7112874 ENCODE Processing Pipeline f02236fa69e0de342ead26e968d2998a https://www.encodeproject.org/files/ENCFF264KUV/@@download/ENCFF264KUV.bed.gz hg19 released low read depth, antibody characterized with exemption missing control alignments ENCFF470XSK bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF729JBY, ENCFF743HYF 6656025 ENCODE Processing Pipeline 60172433ce6edcbd05d4ded1bb9c513d https://www.encodeproject.org/files/ENCFF470XSK/@@download/ENCFF470XSK.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF783GCE bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF500XCK, ENCFF743HYF 6447846 ENCODE Processing Pipeline 7cb8cf2a71265a1596660d48d5838dec https://www.encodeproject.org/files/ENCFF783GCE/@@download/ENCFF783GCE.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF524YHM bed narrowPeak peaks ENCSR603XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF589-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF500XCK, ENCFF729JBY, ENCFF743HYF 7097897 ENCODE Processing Pipeline a21018d8f50da75f19a06ee928071dfc https://www.encodeproject.org/files/ENCFF524YHM/@@download/ENCFF524YHM.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF169ZKI bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human ENCAB278ULX DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF541GVQ, ENCFF922JGL 5154718 ENCODE Processing Pipeline 6a4f993445e20144e700970ada0ca6d1 https://www.encodeproject.org/files/ENCFF169ZKI/@@download/ENCFF169ZKI.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF690XME bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human ENCAB278ULX DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF541GVQ, ENCFF703DOA, ENCFF851QFR, ENCFF922JGL 6477087 ENCODE Processing Pipeline c4aa812bf5b1fb63a3dda7f8bca556b4 https://www.encodeproject.org/files/ENCFF690XME/@@download/ENCFF690XME.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF222MCF bed narrowPeak peaks ENCSR814AJH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF9-human ENCAB278ULX DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF703DOA, ENCFF851QFR 5113942 ENCODE Processing Pipeline daa67ed21404762d9b3243f9edb73e63 https://www.encodeproject.org/files/ENCFF222MCF/@@download/ENCFF222MCF.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF001VNV bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human ENCAB000AIT DNA see document see document False 2011-10-29 ENCODE 551098 Michael Snyder, Stanford 47edb8c708aa3e49b94b4b5aae4db4e7 https://www.encodeproject.org/files/ENCFF001VNV/@@download/ENCFF001VNV.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF492QMD bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human ENCAB000AIT DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF976PFK 4545903 ENCODE Processing Pipeline 0a0487aed9dc6fe659d246aa985ef4f2 https://www.encodeproject.org/files/ENCFF492QMD/@@download/ENCFF492QMD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF408TRC bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human ENCAB000AIT DNA see document see document False 2011-10-29 ENCODE 2 ENCFF094XLP, ENCFF710NTS 4419284 ENCODE Processing Pipeline 5feca8703d12480c372660f58565d18a https://www.encodeproject.org/files/ENCFF408TRC/@@download/ENCFF408TRC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF400DMX bed narrowPeak peaks ENCSR000EGZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MXI1-human ENCAB000AIT DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF094XLP, ENCFF710NTS, ENCFF976PFK 5355130 ENCODE Processing Pipeline 067c093be2af67e05fa64addf5f7ee7b https://www.encodeproject.org/files/ENCFF400DMX/@@download/ENCFF400DMX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF490XLD bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB006QDW DNA False 2016-10-31 ENCODE 2 ENCFF834TUP, ENCFF984QQT 7111483 ENCODE Processing Pipeline 5c956902a94641b04b8a3f59bc08f2c6 https://www.encodeproject.org/files/ENCFF490XLD/@@download/ENCFF490XLD.bed.gz hg19 released mild to moderate bottlenecking ENCFF499UMV bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB006QDW DNA False 2016-10-31 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF, ENCFF984QQT 7313485 ENCODE Processing Pipeline 2541b212e7722e9bc107563074d7984d https://www.encodeproject.org/files/ENCFF499UMV/@@download/ENCFF499UMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF331TXU bed narrowPeak peaks ENCSR360HRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB006QDW DNA False 2016-10-31 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF892UVF 7232667 ENCODE Processing Pipeline b34b2ecd91e077a9bf871828610a093d https://www.encodeproject.org/files/ENCFF331TXU/@@download/ENCFF331TXU.bed.gz hg19 released mild to moderate bottlenecking ENCFF447WIA bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB965DCO DNA False 2018-01-26 ENCODE 1 ENCFF527XUH, ENCFF581ZJL 6622782 ENCODE Processing Pipeline 0fc65caa5a29e1d351889a9150ccd059 https://www.encodeproject.org/files/ENCFF447WIA/@@download/ENCFF447WIA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF824QXV bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB965DCO DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF527XUH, ENCFF581ZJL, ENCFF710HBZ 7194279 ENCODE Processing Pipeline 1eb0173ea8cccdc441a9e2e343607aeb https://www.encodeproject.org/files/ENCFF824QXV/@@download/ENCFF824QXV.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF929HKG bed narrowPeak peaks ENCSR241LIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB965DCO DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF710HBZ 6616578 ENCODE Processing Pipeline 52c7e8259913e8e9180a9d2c6578d013 https://www.encodeproject.org/files/ENCFF929HKG/@@download/ENCFF929HKG.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF433ANO bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human ENCAB797CMZ DNA False 2016-12-05 ENCODE 1 ENCFF066EHS, ENCFF834TUP 7144829 ENCODE Processing Pipeline fe359d4ff2dce87656e7ebd6b6d138ba https://www.encodeproject.org/files/ENCFF433ANO/@@download/ENCFF433ANO.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF639RPL bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human ENCAB797CMZ DNA False 2016-12-05 ENCODE 1, 2 ENCFF066EHS, ENCFF160VXC, ENCFF712WEK, ENCFF834TUP 7251086 ENCODE Processing Pipeline 082aa1a21dc8e4ed61552495835dd97a https://www.encodeproject.org/files/ENCFF639RPL/@@download/ENCFF639RPL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF975UYT bed narrowPeak peaks ENCSR780BBJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZZZ3-human ENCAB797CMZ DNA False 2016-12-05 ENCODE 2 ENCFF160VXC, ENCFF712WEK 6769806 ENCODE Processing Pipeline 1d5437af2fa6db05277da419a4a3e02d https://www.encodeproject.org/files/ENCFF975UYT/@@download/ENCFF975UYT.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF001UJC bed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-02-29 ENCODE 1 1 755568 Richard Myers, HAIB 0680a3e8b22b1807f9780998637981ee https://www.encodeproject.org/files/ENCFF001UJC/@@download/ENCFF001UJC.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF001UJD bed broadPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-02-29 ENCODE 2 1 244531 Richard Myers, HAIB 34e29cd979c51c24a2281844874a386f https://www.encodeproject.org/files/ENCFF001UJD/@@download/ENCFF001UJD.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF831QNI bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF725HAK 6882452 ENCODE Processing Pipeline b636262d4059d2227749aab51878ac9d https://www.encodeproject.org/files/ENCFF831QNI/@@download/ENCFF831QNI.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF653UJT bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-02-29 ENCODE 2 ENCFF045NWB, ENCFF522HDC 6103983 ENCODE Processing Pipeline 7384bf8990c218b47cac769d4470c370 https://www.encodeproject.org/files/ENCFF653UJT/@@download/ENCFF653UJT.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF064WFD bed narrowPeak peaks ENCSR000BRT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF045NWB, ENCFF522HDC, ENCFF725HAK 7028966 ENCODE Processing Pipeline 2671d55a6b2309c18e827d8b9a49f29b https://www.encodeproject.org/files/ENCFF064WFD/@@download/ENCFF064WFD.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF001UJA bed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB000AEH DNA see document see document False 2011-07-18 ENCODE 1 1 37409 Richard Myers, HAIB 6fd77f66e0f4d0b77ed4aa658d2e99d0 https://www.encodeproject.org/files/ENCFF001UJA/@@download/ENCFF001UJA.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJB bed broadPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB000AEH DNA see document see document False 2011-07-18 ENCODE 2 1 38675 Richard Myers, HAIB 3f18ccd4f8287ec6d4cd8247770797af https://www.encodeproject.org/files/ENCFF001UJB/@@download/ENCFF001UJB.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF185HLZ bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB000AEH DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF144FIS, ENCFF477WUN, ENCFF750MIM 4909274 ENCODE Processing Pipeline 5f04cd4551c1346375f9e1b5209e8658 https://www.encodeproject.org/files/ENCFF185HLZ/@@download/ENCFF185HLZ.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF674BPH bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB000AEH DNA see document see document False 2011-07-18 ENCODE 1 ENCFF144FIS, ENCFF750MIM 755262 ENCODE Processing Pipeline 0dd0eeeb0b8df3d7fc9612b201349848 https://www.encodeproject.org/files/ENCFF674BPH/@@download/ENCFF674BPH.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF650YKB bed narrowPeak peaks ENCSR000BKH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB000AEH DNA see document see document False 2011-07-18 ENCODE 2 ENCFF477WUN, ENCFF750MIM 3690353 ENCODE Processing Pipeline d43b5690540dd71c1b9f817ded4a79c2 https://www.encodeproject.org/files/ENCFF650YKB/@@download/ENCFF650YKB.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF001SZR bed broadPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human ENCAB000AHK DNA see document see document False 2012-08-06 ENCODE 2002488 Bradley Bernstein, Broad 983c9a47c9565d33539929dc62d94739 https://www.encodeproject.org/files/ENCFF001SZR/@@download/ENCFF001SZR.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing derived_from insufficient read depth ENCFF322OPC bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human ENCAB000AHK DNA see document see document False 2012-08-06 ENCODE 1 ENCFF245PJA, ENCFF422HPM, ENCFF574XYY 4336218 ENCODE Processing Pipeline 3580d942b4d0b3d698399cc018084638 https://www.encodeproject.org/files/ENCFF322OPC/@@download/ENCFF322OPC.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF996VOF bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human ENCAB000AHK DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF392VDD 3689177 ENCODE Processing Pipeline c9dd6ff51d059e1f979716b9efb805d9 https://www.encodeproject.org/files/ENCFF996VOF/@@download/ENCFF996VOF.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF676RZD bed narrowPeak peaks ENCSR000ATJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC6-human ENCAB000AHK DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF245PJA, ENCFF392VDD, ENCFF422HPM, ENCFF574XYY 5073702 ENCODE Processing Pipeline 2d696324ca493f3e066ce7f4a9dc1cce https://www.encodeproject.org/files/ENCFF676RZD/@@download/ENCFF676RZD.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length insufficient read depth ENCFF401MRM bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 1, 2 ENCFF024YPR, ENCFF051LWI, ENCFF581ZJL, ENCFF970IIN 6881000 ENCODE Processing Pipeline ac8d8aeb5f2e86a57f15e917cc5ca947 https://www.encodeproject.org/files/ENCFF401MRM/@@download/ENCFF401MRM.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF358UWQ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 2 ENCFF024YPR, ENCFF051LWI 5981773 ENCODE Processing Pipeline ca1bc3fdc58e3c336e9dd1a26d572ffe https://www.encodeproject.org/files/ENCFF358UWQ/@@download/ENCFF358UWQ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF252JHJ bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF970IIN 6123031 ENCODE Processing Pipeline 723d9629d91b43ddfa993933a6ac000a https://www.encodeproject.org/files/ENCFF252JHJ/@@download/ENCFF252JHJ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF199PBO bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF911AAQ 6463924 ENCODE Processing Pipeline c12f8fc6733ef74ba731a112632d4e12 https://www.encodeproject.org/files/ENCFF199PBO/@@download/ENCFF199PBO.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF721GUV bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 2 ENCFF834TUP, ENCFF841KTI 6499363 ENCODE Processing Pipeline bf67c0603423efddd5ece0d9967c5b30 https://www.encodeproject.org/files/ENCFF721GUV/@@download/ENCFF721GUV.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF260KBY bed narrowPeak peaks ENCSR720HUL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB357OHU DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF834TUP, ENCFF841KTI, ENCFF911AAQ 7195753 ENCODE Processing Pipeline 0b6c06ceff1c1865273eb87fb1543b64 https://www.encodeproject.org/files/ENCFF260KBY/@@download/ENCFF260KBY.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody, poor library complexity, severe bottlenecking ENCFF986DDI bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human ENCAB702SYV DNA False 2017-06-29 ENCODE 1 ENCFF773WIK, ENCFF834TUP 7123126 ENCODE Processing Pipeline bbb75f1080f65d0247bac28cfbadfa10 https://www.encodeproject.org/files/ENCFF986DDI/@@download/ENCFF986DDI.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF311FOZ bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human ENCAB702SYV DNA False 2017-06-29 ENCODE 2 ENCFF147YGB, ENCFF160VXC, ENCFF834TUP 7285652 ENCODE Processing Pipeline 1a0604f259a0b01e89094bf7f2d187be https://www.encodeproject.org/files/ENCFF311FOZ/@@download/ENCFF311FOZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF307VFN bed narrowPeak peaks ENCSR817QKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP400-human ENCAB702SYV DNA False 2017-06-29 ENCODE 1, 2 ENCFF147YGB, ENCFF160VXC, ENCFF773WIK, ENCFF834TUP 7287629 ENCODE Processing Pipeline 63a0390ef128a8738418b65c96ef42f0 https://www.encodeproject.org/files/ENCFF307VFN/@@download/ENCFF307VFN.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF312EZM bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6719059 ENCODE Processing Pipeline 71a739dae92c5ca03408ff454f3888de https://www.encodeproject.org/files/ENCFF312EZM/@@download/ENCFF312EZM.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF477OCU bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 7173527 ENCODE Processing Pipeline 10fa05a4c4b4478b6214e169a15b4d44 https://www.encodeproject.org/files/ENCFF477OCU/@@download/ENCFF477OCU.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF940NRT bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7019893 ENCODE Processing Pipeline 5936d3a4c380f4b13628191fba4e233b https://www.encodeproject.org/files/ENCFF940NRT/@@download/ENCFF940NRT.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF794VUJ bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF882JOI 6789866 ENCODE Processing Pipeline 235c938786e379e416bcee3bb756c555 https://www.encodeproject.org/files/ENCFF794VUJ/@@download/ENCFF794VUJ.bed.gz hg19 archived mild to moderate bottlenecking missing control alignments ENCFF731JDO bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF724MBT 7095383 ENCODE Processing Pipeline c35cf7cbae9e72bc00e9688c8705e0b5 https://www.encodeproject.org/files/ENCFF731JDO/@@download/ENCFF731JDO.bed.gz hg19 archived mild to moderate bottlenecking missing control alignments ENCFF116JUN bed narrowPeak peaks ENCSR494TDU ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF724MBT, ENCFF882JOI 7182225 ENCODE Processing Pipeline 26d260ae9ace801d7f8f70505b4ac162 https://www.encodeproject.org/files/ENCFF116JUN/@@download/ENCFF116JUN.bed.gz hg19 archived mild to moderate bottlenecking missing control alignments ENCFF175RNO bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB000BSE DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF012IGR, ENCFF061QOJ, ENCFF527GGD, ENCFF578ISP 6524209 ENCODE Processing Pipeline b006770fcaf5952edc18c06c66e6941d https://www.encodeproject.org/files/ENCFF175RNO/@@download/ENCFF175RNO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF472YHR bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB000BSE DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF527GGD 5360673 ENCODE Processing Pipeline 3eef564b1fbc3ea5f95219df16d69765 https://www.encodeproject.org/files/ENCFF472YHR/@@download/ENCFF472YHR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF373SQY bed narrowPeak peaks ENCSR000FCB ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB000BSE DNA see document see document False 2014-07-07 ENCODE 1 ENCFF012IGR, ENCFF578ISP 5147423 ENCODE Processing Pipeline 73a37eb0fe3c63684da32b63ebfb2efc https://www.encodeproject.org/files/ENCFF373SQY/@@download/ENCFF373SQY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF060XZX bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human ENCAB000BED DNA False 2016-07-28 ENCODE 1 ENCFF335IPE, ENCFF833DBR 4381264 ENCODE Processing Pipeline 383e6889efb44997cec370ab5d17c325 https://www.encodeproject.org/files/ENCFF060XZX/@@download/ENCFF060XZX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF274DVQ bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human ENCAB000BED DNA False 2016-07-28 ENCODE 2 ENCFF508MJP, ENCFF879OQC 4527559 ENCODE Processing Pipeline 989e63de6058c49c3266aaa1f69937d1 https://www.encodeproject.org/files/ENCFF274DVQ/@@download/ENCFF274DVQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF975NRI bed narrowPeak peaks ENCSR888XZK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7L2-human ENCAB000BED DNA False 2016-07-28 ENCODE 1, 2 ENCFF335IPE, ENCFF508MJP, ENCFF833DBR, ENCFF879OQC 6063898 ENCODE Processing Pipeline c2192e723f27a63840455d5300ad9609 https://www.encodeproject.org/files/ENCFF975NRI/@@download/ENCFF975NRI.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF001VOG bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 256161 Sherman Weissman, Yale 8d7e4dc4e4c06518eba48533e260b289 https://www.encodeproject.org/files/ENCFF001VOG/@@download/ENCFF001VOG.bed.gz hg19 archived mixed read lengths, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF960XPL bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF092XNX, ENCFF204HNK, ENCFF331ARQ 5909698 ENCODE Processing Pipeline eafe5d6aa8253767b2ff8a43a373dedc https://www.encodeproject.org/files/ENCFF960XPL/@@download/ENCFF960XPL.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF504GWC bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF092XNX, ENCFF331ARQ 3084780 ENCODE Processing Pipeline 579a7e054022988ab00ef76fb44b1f7a https://www.encodeproject.org/files/ENCFF504GWC/@@download/ENCFF504GWC.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF070AMD bed narrowPeak peaks ENCSR000FAW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF204HNK, ENCFF331ARQ 4885849 ENCODE Processing Pipeline b60020d752c55ab932b317dfae0c5108 https://www.encodeproject.org/files/ENCFF070AMD/@@download/ENCFF070AMD.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001UKN bed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AJK DNA see document see document False 2011-07-18 ENCODE 1 1 373967 Richard Myers, HAIB 69370eb3b54abca4fb9922bcf9895392 https://www.encodeproject.org/files/ENCFF001UKN/@@download/ENCFF001UKN.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001UKO bed broadPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AJK DNA see document see document False 2011-07-18 ENCODE 2 1 185372 Richard Myers, HAIB d34bfc68a5e6ac6ecb52a876d9d93c74 https://www.encodeproject.org/files/ENCFF001UKO/@@download/ENCFF001UKO.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF621KLV bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AJK DNA see document see document False 2011-07-18 ENCODE 1 ENCFF294HHJ, ENCFF750MIM 2505082 ENCODE Processing Pipeline ed746289c113d26f59115ce9fd2bf3fc https://www.encodeproject.org/files/ENCFF621KLV/@@download/ENCFF621KLV.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF764CZH bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AJK DNA see document see document False 2011-07-18 ENCODE 2 ENCFF520WAB, ENCFF750MIM 2665976 ENCODE Processing Pipeline 5abea8924974ef06db7224d4c8df8842 https://www.encodeproject.org/files/ENCFF764CZH/@@download/ENCFF764CZH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF051ITR bed narrowPeak peaks ENCSR000BMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AJK DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF294HHJ, ENCFF520WAB, ENCFF750MIM 1780886 ENCODE Processing Pipeline 63f8f76fae5914f5db88ef58fa1c7e9c https://www.encodeproject.org/files/ENCFF051ITR/@@download/ENCFF051ITR.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF088HLB bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human ENCAB791UJZ DNA False 2018-01-26 ENCODE 1, 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 7228456 ENCODE Processing Pipeline c979bcc5b80b613d1f06c8a5b530f1fc https://www.encodeproject.org/files/ENCFF088HLB/@@download/ENCFF088HLB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF306BVA bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human ENCAB791UJZ DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF517SOJ 6500985 ENCODE Processing Pipeline bd57724400e546636bf4a80368f9bf47 https://www.encodeproject.org/files/ENCFF306BVA/@@download/ENCFF306BVA.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF449TFM bed narrowPeak peaks ENCSR594SMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF20-human ENCAB791UJZ DNA False 2018-01-26 ENCODE 2 ENCFF112ARH, ENCFF262CJE, ENCFF506DFV 6864443 ENCODE Processing Pipeline 2e9eed6ee7a02a14ffa6427b2765eabf https://www.encodeproject.org/files/ENCFF449TFM/@@download/ENCFF449TFM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF128NOD bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human ENCAB910DVS DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF600TNX, ENCFF720XTH, ENCFF851QFR, ENCFF922JGL 6011116 ENCODE Processing Pipeline c3f9c468c4d0e6c12d9fc5a75a3e35c9 https://www.encodeproject.org/files/ENCFF128NOD/@@download/ENCFF128NOD.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF037TEH bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human ENCAB910DVS DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF600TNX, ENCFF851QFR 4712573 ENCODE Processing Pipeline 413e4b43f19533fd13950fe6e55cbefb https://www.encodeproject.org/files/ENCFF037TEH/@@download/ENCFF037TEH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF087ZHG bed narrowPeak peaks ENCSR222MYK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SRSF7-human ENCAB910DVS DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF720XTH, ENCFF922JGL 4742599 ENCODE Processing Pipeline 961998556f5c583d5de4ee3724b5d690 https://www.encodeproject.org/files/ENCFF087ZHG/@@download/ENCFF087ZHG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF231SVC bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human ENCAB796NDK DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF503INV, ENCFF834TUP 7236685 ENCODE Processing Pipeline 627b7ac1338041ecaa9fb192e32943f6 https://www.encodeproject.org/files/ENCFF231SVC/@@download/ENCFF231SVC.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, antibody characterized with exemption ENCFF118ZSL bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human ENCAB796NDK DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF503INV, ENCFF834TUP, ENCFF919XGC 7343115 ENCODE Processing Pipeline 05b1b1752d0dbbb3cab40f575ad26578 https://www.encodeproject.org/files/ENCFF118ZSL/@@download/ENCFF118ZSL.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, antibody characterized with exemption ENCFF549JYE bed narrowPeak peaks ENCSR822CCM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID1B-human ENCAB796NDK DNA False 2016-11-30 ENCODE 2 ENCFF834TUP, ENCFF919XGC 7294885 ENCODE Processing Pipeline c69725cc8f688211356ca018373a030c https://www.encodeproject.org/files/ENCFF549JYE/@@download/ENCFF549JYE.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, antibody characterized with exemption ENCFF477OXP bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB301QZF DNA False 2017-07-28 ENCODE 1 ENCFF581ZJL, ENCFF829QRY 6484621 ENCODE Processing Pipeline fa90de3cfac4674edf9523388e31ccf6 https://www.encodeproject.org/files/ENCFF477OXP/@@download/ENCFF477OXP.bed.gz hg19 released antibody characterized with exemption ENCFF813QIG bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB301QZF DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF448ALJ 6696456 ENCODE Processing Pipeline d3770d1cb49701c8897d34afc573b6a5 https://www.encodeproject.org/files/ENCFF813QIG/@@download/ENCFF813QIG.bed.gz hg19 released antibody characterized with exemption ENCFF901ECC bed narrowPeak peaks ENCSR786OQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB301QZF DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF448ALJ, ENCFF581ZJL, ENCFF829QRY 7165546 ENCODE Processing Pipeline 8a0ea8c96fbe0c65f8266674e4eee47b https://www.encodeproject.org/files/ENCFF901ECC/@@download/ENCFF901ECC.bed.gz hg19 released antibody characterized with exemption ENCFF993MOQ bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF387AIX, ENCFF904PIO 6311225 ENCODE Processing Pipeline 11f6ed6c2dc07141fabb2e9e59bf1606 https://www.encodeproject.org/files/ENCFF993MOQ/@@download/ENCFF993MOQ.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF401ROZ bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF070QUN, ENCFF387AIX, ENCFF904PIO 7156529 ENCODE Processing Pipeline 74c2adb3a26e22eadbffdd10641b898a https://www.encodeproject.org/files/ENCFF401ROZ/@@download/ENCFF401ROZ.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF347CVK bed narrowPeak peaks ENCSR772EEN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-RELA-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF070QUN, ENCFF387AIX 6644140 ENCODE Processing Pipeline 1973f2cfc89d73a80ac9d8fb35c64493 https://www.encodeproject.org/files/ENCFF347CVK/@@download/ENCFF347CVK.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF334IIE bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human ENCAB000BDX DNA False 2014-07-07 ENCODE 2 ENCFF637BQA, ENCFF879OQC 4718507 ENCODE Processing Pipeline 15b4c3e9c786715520f4db3583147756 https://www.encodeproject.org/files/ENCFF334IIE/@@download/ENCFF334IIE.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF973JKQ bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human ENCAB000BDX DNA False 2014-07-07 ENCODE 1, 2 ENCFF325ZZV, ENCFF335IPE, ENCFF637BQA, ENCFF879OQC 6329329 ENCODE Processing Pipeline a968bd6eaed6ee269cd59eec2944eff7 https://www.encodeproject.org/files/ENCFF973JKQ/@@download/ENCFF973JKQ.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF314SAN bed narrowPeak peaks ENCSR986CDX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NEUROD1-human ENCAB000BDX DNA False 2014-07-07 ENCODE 1 ENCFF325ZZV, ENCFF335IPE 5353439 ENCODE Processing Pipeline a666fc7ec79b9e3fd8021d4423ecd24c https://www.encodeproject.org/files/ENCFF314SAN/@@download/ENCFF314SAN.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF001TAG bed broadPeak peaks ENCSR000AUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human ENCAB000ALK, ENCAB741YHG DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000CCI 312894 Bradley Bernstein, Broad d2e578c371285096edf82d2dc493df07 https://www.encodeproject.org/files/ENCFF001TAG/@@download/ENCFF001TAG.bed.gz hg19 archived mixed read lengths, inconsistent platforms, low read length missing raw data in replicate ENCFF601KTD bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB320AVC DNA False 2018-01-30 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF842XJL 6898463 ENCODE Processing Pipeline 3c127fea89d3f7d81af3ae4f316cd256 https://www.encodeproject.org/files/ENCFF601KTD/@@download/ENCFF601KTD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF007QMQ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB320AVC DNA False 2018-01-30 ENCODE 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV 6900980 ENCODE Processing Pipeline d8e1cf8388b04170b3f1a6067d13be0c https://www.encodeproject.org/files/ENCFF007QMQ/@@download/ENCFF007QMQ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF846SYJ bed narrowPeak peaks ENCSR189VXS ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB320AVC DNA False 2018-01-30 ENCODE 1, 2 ENCFF262CJE, ENCFF502QVA, ENCFF506DFV, ENCFF842XJL 7235294 ENCODE Processing Pipeline 25007ee15b2fd753203339b932672eea https://www.encodeproject.org/files/ENCFF846SYJ/@@download/ENCFF846SYJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF272DJX bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB317YKX DNA False 2018-02-14 ENCODE 1, 2 ENCFF581ZJL, ENCFF640FIB, ENCFF972MSK 7021222 ENCODE Processing Pipeline b52d9c4d0b337ae699d028d93bc3beee https://www.encodeproject.org/files/ENCFF272DJX/@@download/ENCFF272DJX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF228DXI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB317YKX DNA False 2018-02-14 ENCODE 1 ENCFF581ZJL, ENCFF640FIB 6296303 ENCODE Processing Pipeline 4ae1fa01ff3ce70111549ba834eb89a5 https://www.encodeproject.org/files/ENCFF228DXI/@@download/ENCFF228DXI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF258OQI bed narrowPeak peaks ENCSR068VRA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB317YKX DNA False 2018-02-14 ENCODE 2 ENCFF581ZJL, ENCFF972MSK 6502377 ENCODE Processing Pipeline de5c501ce55e29692ecdc1d0c60d8024 https://www.encodeproject.org/files/ENCFF258OQI/@@download/ENCFF258OQI.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF001VPK bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human ENCAB000AMN DNA see document see document False 2012-08-20 ENCODE 609225 Michael Snyder, Stanford f3c6590064e9f00e2d27030c95559992 https://www.encodeproject.org/files/ENCFF001VPK/@@download/ENCFF001VPK.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF726OZS bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human ENCAB000AMN DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF996ZXG 4681440 ENCODE Processing Pipeline 1dd1aa8e753206f395d457c2e4a927cc https://www.encodeproject.org/files/ENCFF726OZS/@@download/ENCFF726OZS.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF305IJI bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human ENCAB000AMN DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF349TZM, ENCFF710NTS, ENCFF996ZXG 5656691 ENCODE Processing Pipeline 796dc1bfd2a78d8233e18ed7d3b2bbe7 https://www.encodeproject.org/files/ENCFF305IJI/@@download/ENCFF305IJI.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF547MRJ bed narrowPeak peaks ENCSR000EFR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZC3H11A-human ENCAB000AMN DNA see document see document False 2012-08-20 ENCODE 1 ENCFF349TZM, ENCFF710NTS 4633130 ENCODE Processing Pipeline 9577c1e0d4b7c256eb256e79d11f8f85 https://www.encodeproject.org/files/ENCFF547MRJ/@@download/ENCFF547MRJ.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF610XAF bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF129ZZR, ENCFF606YNV 7171179 ENCODE Processing Pipeline 6999350ac335a593e5c0587ad900d047 https://www.encodeproject.org/files/ENCFF610XAF/@@download/ENCFF610XAF.bed.gz hg19 released missing genetic modification characterization ENCFF374WLL bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF129ZZR, ENCFF961GDC 7054215 ENCODE Processing Pipeline 967f0bbb6d85e93bba5900e6ed6d2cf1 https://www.encodeproject.org/files/ENCFF374WLL/@@download/ENCFF374WLL.bed.gz hg19 released missing genetic modification characterization ENCFF994BAN bed narrowPeak peaks ENCSR750LYM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF129ZZR, ENCFF606YNV, ENCFF961GDC 7292790 ENCODE Processing Pipeline d715dcfd343638c0f4875ad654690277 https://www.encodeproject.org/files/ENCFF994BAN/@@download/ENCFF994BAN.bed.gz hg19 released missing genetic modification characterization ENCFF652VBD bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB681JHP DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF365ZKI, ENCFF581ZJL, ENCFF670CVM 7215542 ENCODE Processing Pipeline c890bbbbef855799f00e8a3d6f15464f https://www.encodeproject.org/files/ENCFF652VBD/@@download/ENCFF652VBD.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF420EZA bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB681JHP DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF670CVM 6776679 ENCODE Processing Pipeline fac5621ffb5d3033a828fd2b721573b0 https://www.encodeproject.org/files/ENCFF420EZA/@@download/ENCFF420EZA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF958FGE bed narrowPeak peaks ENCSR797SWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MITF-human ENCAB681JHP DNA False 2018-01-26 ENCODE 3 ENCFF365ZKI, ENCFF581ZJL 6801009 ENCODE Processing Pipeline 30f37a2484cc13307fd55e8a60edfd34 https://www.encodeproject.org/files/ENCFF958FGE/@@download/ENCFF958FGE.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF710KBI bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF099DHX, ENCFF807NZJ 6603746 ENCODE Processing Pipeline 5c96a10199f866ef8d8ff81060efc315 https://www.encodeproject.org/files/ENCFF710KBI/@@download/ENCFF710KBI.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF670KBE bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF099DHX, ENCFF767NHP 6408804 ENCODE Processing Pipeline e30b7c45b6616618875246c074065c8f https://www.encodeproject.org/files/ENCFF670KBE/@@download/ENCFF670KBE.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF694BDZ bed narrowPeak peaks ENCSR117WTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF24-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF099DHX, ENCFF767NHP, ENCFF807NZJ 7101195 ENCODE Processing Pipeline af90e22bf4cff8c3624eb3d60fcd0789 https://www.encodeproject.org/files/ENCFF694BDZ/@@download/ENCFF694BDZ.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF505CXS bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human ENCAB573MXX DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP, ENCFF761ADG 7276731 ENCODE Processing Pipeline f03019a225e86d921b52d095e8ec8ad2 https://www.encodeproject.org/files/ENCFF505CXS/@@download/ENCFF505CXS.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF756HQJ bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human ENCAB573MXX DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF761ADG 6458710 ENCODE Processing Pipeline 47860d386d60296bafaba33d7797af80 https://www.encodeproject.org/files/ENCFF756HQJ/@@download/ENCFF756HQJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF216JOG bed narrowPeak peaks ENCSR115BBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ASH1L-human ENCAB573MXX DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF605EYP 7257353 ENCODE Processing Pipeline 81289654f2e34566512ad9f7d1d7c675 https://www.encodeproject.org/files/ENCFF216JOG/@@download/ENCFF216JOG.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001VOD bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 184328 Sherman Weissman, Yale d0fcc2fae7c18772508d2e9676a411ea https://www.encodeproject.org/files/ENCFF001VOD/@@download/ENCFF001VOD.bed.gz hg19 archived mixed read lengths, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF573ZMO bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF466HUV, ENCFF650MOB 3850971 ENCODE Processing Pipeline 74c008bd757c6d578f4dcedfc1637ff4 https://www.encodeproject.org/files/ENCFF573ZMO/@@download/ENCFF573ZMO.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF368DTT bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF454MRU, ENCFF650MOB 5165500 ENCODE Processing Pipeline b2516f78e2380fda0832e66adb41f82f https://www.encodeproject.org/files/ENCFF368DTT/@@download/ENCFF368DTT.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF502ZBE bed narrowPeak peaks ENCSR000FAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF454MRU, ENCFF466HUV, ENCFF650MOB 5928682 ENCODE Processing Pipeline f5efc8a924b03586579828582a373ff3 https://www.encodeproject.org/files/ENCFF502ZBE/@@download/ENCFF502ZBE.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF087NBH bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human ENCAB882VQT DNA False 2018-01-26 ENCODE 3 ENCFF581ZJL, ENCFF965IIX 6391853 ENCODE Processing Pipeline 68000bd1d857d5300240120488bc52e1 https://www.encodeproject.org/files/ENCFF087NBH/@@download/ENCFF087NBH.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF268LPT bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human ENCAB882VQT DNA False 2018-01-26 ENCODE 2, 3 ENCFF021QKM, ENCFF051LWI, ENCFF581ZJL, ENCFF965IIX 7165808 ENCODE Processing Pipeline d90c1a9913267c01a0226fecdb8d4e98 https://www.encodeproject.org/files/ENCFF268LPT/@@download/ENCFF268LPT.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF078LXS bed narrowPeak peaks ENCSR431XGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PYGO2-human ENCAB882VQT DNA False 2018-01-26 ENCODE 2 ENCFF021QKM, ENCFF051LWI 6475842 ENCODE Processing Pipeline 99400599479cd250e63e2448cfb3e94f https://www.encodeproject.org/files/ENCFF078LXS/@@download/ENCFF078LXS.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF155ELE bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human ENCAB307OWA DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF643WDX, ENCFF717XED 7244647 ENCODE Processing Pipeline e15a0f9b9da61d5fbde8b591dba53203 https://www.encodeproject.org/files/ENCFF155ELE/@@download/ENCFF155ELE.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF794YNX bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human ENCAB307OWA DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF717XED 6741435 ENCODE Processing Pipeline e0a0cb8650826c0fd9877d30d8a8bb4c https://www.encodeproject.org/files/ENCFF794YNX/@@download/ENCFF794YNX.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF827TVA bed narrowPeak peaks ENCSR177XCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD9-human ENCAB307OWA DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF643WDX 6823194 ENCODE Processing Pipeline f99e6433e27c7d123a4ea6d6aa1212e1 https://www.encodeproject.org/files/ENCFF827TVA/@@download/ENCFF827TVA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF263MQY bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB548QXS DNA False 2016-07-08 ENCODE 1 ENCFF160VXC, ENCFF478OFO 7015651 ENCODE Processing Pipeline 9dafa63525ad4fba374d03ff634f5cdd https://www.encodeproject.org/files/ENCFF263MQY/@@download/ENCFF263MQY.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF164BVB bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB548QXS DNA False 2016-07-08 ENCODE 2 ENCFF512OEJ, ENCFF834TUP 7021524 ENCODE Processing Pipeline f0b86a668bd367ffc7369bf13feb85fa https://www.encodeproject.org/files/ENCFF164BVB/@@download/ENCFF164BVB.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF034DTN bed narrowPeak peaks ENCSR028UIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB548QXS DNA False 2016-07-08 ENCODE 1, 2 ENCFF160VXC, ENCFF478OFO, ENCFF512OEJ, ENCFF834TUP 7255556 ENCODE Processing Pipeline 4ac31635812722fe06d173a2b4d1ca88 https://www.encodeproject.org/files/ENCFF034DTN/@@download/ENCFF034DTN.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO ENCFF355KNJ bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF024MPE, ENCFF304EUO 6157206 ENCODE Processing Pipeline dd2a0ea9d56a21d71096278aa6ef3506 https://www.encodeproject.org/files/ENCFF355KNJ/@@download/ENCFF355KNJ.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking missing control alignments ENCFF357IPW bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF304EUO, ENCFF866OLR 6081540 ENCODE Processing Pipeline 9ff6ea0815cc9537fdb85397e1843422 https://www.encodeproject.org/files/ENCFF357IPW/@@download/ENCFF357IPW.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking missing control alignments ENCFF488ZUO bed narrowPeak peaks ENCSR126FZN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTRF-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF024MPE, ENCFF304EUO, ENCFF866OLR 7028784 ENCODE Processing Pipeline 232c2f36af89f4cbd6083828588994ca https://www.encodeproject.org/files/ENCFF488ZUO/@@download/ENCFF488ZUO.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking missing control alignments ENCFF768MUF bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB650PBW DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF069MNA 7062306 ENCODE Processing Pipeline 134d35f18b36ac678477cb75e19a27a2 https://www.encodeproject.org/files/ENCFF768MUF/@@download/ENCFF768MUF.bed.gz hg19 released ENCFF743CIS bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB650PBW DNA False 2016-06-14 ENCODE 1 ENCFF463KKL, ENCFF581ZJL 6703465 ENCODE Processing Pipeline f4e5c9c63dc8c1100f49bb50b9cad7b2 https://www.encodeproject.org/files/ENCFF743CIS/@@download/ENCFF743CIS.bed.gz hg19 released ENCFF948VWR bed narrowPeak peaks ENCSR107GRP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB650PBW DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF069MNA, ENCFF463KKL, ENCFF581ZJL 7288631 ENCODE Processing Pipeline fd4e7234862d196afe25c7a47a39f3bc https://www.encodeproject.org/files/ENCFF948VWR/@@download/ENCFF948VWR.bed.gz hg19 released ENCFF400FLC bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB384ZPY DNA False 2017-11-14 ENCODE 1 ENCFF581ZJL, ENCFF814UHO 7085731 ENCODE Processing Pipeline fb326ecec20c455e0db75b1b0834f938 https://www.encodeproject.org/files/ENCFF400FLC/@@download/ENCFF400FLC.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF209OUR bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB384ZPY DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF814UHO, ENCFF949SZU 7233834 ENCODE Processing Pipeline 657cf754464275113085ecf74d134c93 https://www.encodeproject.org/files/ENCFF209OUR/@@download/ENCFF209OUR.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF403MEX bed narrowPeak peaks ENCSR219BXP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DPF2-human ENCAB384ZPY DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF949SZU 6602302 ENCODE Processing Pipeline 7d86383e5b202945b3db2e73cdce2667 https://www.encodeproject.org/files/ENCFF403MEX/@@download/ENCFF403MEX.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO ENCFF001TAD bed broadPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2012-08-06 ENCODE 628582 Bradley Bernstein, Broad 0efbf96719a76c17c4d2213cb1984d3e https://www.encodeproject.org/files/ENCFF001TAD/@@download/ENCFF001TAD.bed.gz hg19 archived control low read depth, inconsistent platforms, low read length missing derived_from ENCFF333VJJ bed narrowPeak peaks ENCSR000AUT ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF693CKU 4843631 ENCODE Processing Pipeline 9d4599c7a81186ca87e0b18ec19be86f https://www.encodeproject.org/files/ENCFF333VJJ/@@download/ENCFF333VJJ.bed.gz hg19 released control low read depth, inconsistent platforms, low read length ENCFF583UDD bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB108WPN DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF044MLU, ENCFF993VCM 5297343 ENCODE Processing Pipeline 700e439b8337491909faa99b1dd3e5b8 https://www.encodeproject.org/files/ENCFF583UDD/@@download/ENCFF583UDD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF498CHM bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB108WPN DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF177GKX, ENCFF353XLY 5439400 ENCODE Processing Pipeline 7acb46a171c05b14d2af9387c81421f3 https://www.encodeproject.org/files/ENCFF498CHM/@@download/ENCFF498CHM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF559OHC bed narrowPeak peaks ENCSR377BLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB108WPN DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF044MLU, ENCFF177GKX, ENCFF353XLY, ENCFF993VCM 6599389 ENCODE Processing Pipeline 25f3a8e6c39016bd831ba22cb3d044e1 https://www.encodeproject.org/files/ENCFF559OHC/@@download/ENCFF559OHC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF437EBC bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF090MZL, ENCFF472AKN 6044717 ENCODE Processing Pipeline 79c1ec872125b7c061e60ab15a3e95fc https://www.encodeproject.org/files/ENCFF437EBC/@@download/ENCFF437EBC.bed.gz hg19 released missing genetic modification characterization ENCFF672YBV bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF090MZL, ENCFF472AKN, ENCFF572JRO 6911844 ENCODE Processing Pipeline e2e7d31e4b98fccede99c91efacc1ffc https://www.encodeproject.org/files/ENCFF672YBV/@@download/ENCFF672YBV.bed.gz hg19 released missing genetic modification characterization ENCFF878TRQ bed narrowPeak peaks ENCSR926KTP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF9-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF472AKN, ENCFF572JRO 5963655 ENCODE Processing Pipeline 9d8706b5041da11aef4b0eed9722590d https://www.encodeproject.org/files/ENCFF878TRQ/@@download/ENCFF878TRQ.bed.gz hg19 released missing genetic modification characterization ENCFF804EPQ bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human ENCAB732JFX DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF350LLA, ENCFF581ZJL, ENCFF866PHS 7186272 ENCODE Processing Pipeline cd57a51b80df2d7d183804360fba3f62 https://www.encodeproject.org/files/ENCFF804EPQ/@@download/ENCFF804EPQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF805KEB bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human ENCAB732JFX DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF350LLA 6635169 ENCODE Processing Pipeline 45e1425a9acf2feddb601a4f89b81aae https://www.encodeproject.org/files/ENCFF805KEB/@@download/ENCFF805KEB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF847FHY bed narrowPeak peaks ENCSR429QPP ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXM1-human ENCAB732JFX DNA False 2017-01-27 ENCODE 1 ENCFF581ZJL, ENCFF866PHS 6320438 ENCODE Processing Pipeline 2aa8318060a352cb9fc918b08c5f97b7 https://www.encodeproject.org/files/ENCFF847FHY/@@download/ENCFF847FHY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF310DOZ bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human ENCAB171RPO DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF669HLL 5924348 ENCODE Processing Pipeline 14b3f3d8ab5a0509cdc620d42c6ac978 https://www.encodeproject.org/files/ENCFF310DOZ/@@download/ENCFF310DOZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF434UXV bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human ENCAB171RPO DNA False 2018-01-26 ENCODE 1 ENCFF078WRQ, ENCFF581ZJL 6121491 ENCODE Processing Pipeline 9e7a73b61fd9f2cad156317b4ebb9bea https://www.encodeproject.org/files/ENCFF434UXV/@@download/ENCFF434UXV.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF082MXA bed narrowPeak peaks ENCSR370NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF280A-human ENCAB171RPO DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF078WRQ, ENCFF581ZJL, ENCFF669HLL 6998910 ENCODE Processing Pipeline 3a238ed715655731324f9400fe59a7e0 https://www.encodeproject.org/files/ENCFF082MXA/@@download/ENCFF082MXA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF729LTY bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human ENCAB069SSA DNA False 2018-01-26 ENCODE 1 ENCFF264TYT, ENCFF581ZJL 7099146 ENCODE Processing Pipeline 628d0b785b60b2ee6aac7fdeaa4cb08a https://www.encodeproject.org/files/ENCFF729LTY/@@download/ENCFF729LTY.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF230UQS bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human ENCAB069SSA DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF446LZB 7020305 ENCODE Processing Pipeline 18561f1925c356adf0aafbf3d0f97ce9 https://www.encodeproject.org/files/ENCFF230UQS/@@download/ENCFF230UQS.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF255HKN bed narrowPeak peaks ENCSR325RLL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2B-human ENCAB069SSA DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264TYT, ENCFF446LZB, ENCFF581ZJL 7173879 ENCODE Processing Pipeline aeb881b6ecc4466d1162b9536295e499 https://www.encodeproject.org/files/ENCFF255HKN/@@download/ENCFF255HKN.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF655DKD bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human ENCAB005NAZ DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF280IUC, ENCFF477SGV, ENCFF705ZEH, ENCFF743WPX 5726329 ENCODE Processing Pipeline 917e885fcc5ff0ed37a77d8afb906701 https://www.encodeproject.org/files/ENCFF655DKD/@@download/ENCFF655DKD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF580YZC bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human ENCAB005NAZ DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF280IUC, ENCFF477SGV 4439473 ENCODE Processing Pipeline 0071dbbbdc8a024e819944fc4bb4ebe8 https://www.encodeproject.org/files/ENCFF580YZC/@@download/ENCFF580YZC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF470GVA bed narrowPeak peaks ENCSR598GER ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCAR2-human ENCAB005NAZ DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF743WPX 4288879 ENCODE Processing Pipeline c50030cc451b3918150cb26cce04d51b https://www.encodeproject.org/files/ENCFF470GVA/@@download/ENCFF470GVA.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF537WGM bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human ENCAB543JMP DNA False 2016-12-19 ENCODE 1 ENCFF207HQD, ENCFF581ZJL 6921340 ENCODE Processing Pipeline 93a0ffdf4ad41df3b9c58f6d97807eab https://www.encodeproject.org/files/ENCFF537WGM/@@download/ENCFF537WGM.bed.gz hg19 released antibody characterized with exemption ENCFF551YGS bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human ENCAB543JMP DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF153FSJ 6917819 ENCODE Processing Pipeline 2cae284037126b33f97ce7c6234a34f6 https://www.encodeproject.org/files/ENCFF551YGS/@@download/ENCFF551YGS.bed.gz hg19 released antibody characterized with exemption ENCFF621XGF bed narrowPeak peaks ENCSR230PTV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB2-human ENCAB543JMP DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF153FSJ, ENCFF207HQD, ENCFF581ZJL 7237247 ENCODE Processing Pipeline c804f8189ce60593dc50092e9f736670 https://www.encodeproject.org/files/ENCFF621XGF/@@download/ENCFF621XGF.bed.gz hg19 released antibody characterized with exemption ENCFF714MAA bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human ENCAB669LID DNA False 2017-06-29 ENCODE 1 ENCFF014SFP, ENCFF834TUP 6450400 ENCODE Processing Pipeline c9b8e7a77956632bae4156d7541e7c46 https://www.encodeproject.org/files/ENCFF714MAA/@@download/ENCFF714MAA.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF990DZB bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human ENCAB669LID DNA False 2017-06-29 ENCODE 2 ENCFF160VXC, ENCFF407LUN 6755474 ENCODE Processing Pipeline 47b3c1de68cdf273fd28f9de5cab4719 https://www.encodeproject.org/files/ENCFF990DZB/@@download/ENCFF990DZB.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF698FIR bed narrowPeak peaks ENCSR264CZJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRA-human ENCAB669LID DNA False 2017-06-29 ENCODE 1, 2 ENCFF014SFP, ENCFF160VXC, ENCFF407LUN, ENCFF834TUP 7150857 ENCODE Processing Pipeline 3ad86d7030ce9d3b846e4ae8a20f65ca https://www.encodeproject.org/files/ENCFF698FIR/@@download/ENCFF698FIR.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF066ESG bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human ENCAB000BAY DNA False 2016-11-17 ENCODE 1 ENCFF581ZJL, ENCFF808HEF 7153106 ENCODE Processing Pipeline bee251de2f81da98d55e8beebd9ee60d https://www.encodeproject.org/files/ENCFF066ESG/@@download/ENCFF066ESG.bed.gz hg19 released borderline replicate concordance ENCFF860LBQ bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human ENCAB000BAY DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF648UKL 6939738 ENCODE Processing Pipeline 2fa824b16ec57e89bc5dd1fd3a482e7e https://www.encodeproject.org/files/ENCFF860LBQ/@@download/ENCFF860LBQ.bed.gz hg19 released borderline replicate concordance ENCFF467AZP bed narrowPeak peaks ENCSR201NQZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTBP1-human ENCAB000BAY DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF648UKL, ENCFF808HEF 7191476 ENCODE Processing Pipeline a0296cabd69d272ea5f71439820c83d7 https://www.encodeproject.org/files/ENCFF467AZP/@@download/ENCFF467AZP.bed.gz hg19 released borderline replicate concordance ENCFF001VOC bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human ENCAB000AJM DNA see document see document False 2012-05-14 ENCODE 1381827 Michael Snyder, Stanford 68ae1503a36a8e4e49d5435a7ef819da https://www.encodeproject.org/files/ENCFF001VOC/@@download/ENCFF001VOC.bed.gz hg19 archived inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF140XPK bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human ENCAB000AJM DNA see document see document False 2012-05-14 ENCODE 1 ENCFF703ULA, ENCFF710NTS 5254759 ENCODE Processing Pipeline 5da407a55ac8e67282768fa2dafa3448 https://www.encodeproject.org/files/ENCFF140XPK/@@download/ENCFF140XPK.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF379CMJ bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human ENCAB000AJM DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF366ROL, ENCFF703ULA, ENCFF710NTS 4292138 ENCODE Processing Pipeline 79c4e391ee34962115e8162c8b45c989 https://www.encodeproject.org/files/ENCFF379CMJ/@@download/ENCFF379CMJ.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF721DKV bed narrowPeak peaks ENCSR000EGE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EP300-human ENCAB000AJM DNA see document see document False 2012-05-14 ENCODE 2 ENCFF366ROL, ENCFF710NTS 5331822 ENCODE Processing Pipeline 54d16af622c98713d139299498e6adb2 https://www.encodeproject.org/files/ENCFF721DKV/@@download/ENCFF721DKV.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF488HLT bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB362XEV DNA False 2017-02-03 ENCODE 1 ENCFF160VXC, ENCFF775NNT 6425855 ENCODE Processing Pipeline a3be0c0dbff51a7c107cd61844718d65 https://www.encodeproject.org/files/ENCFF488HLT/@@download/ENCFF488HLT.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF885FEE bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB362XEV DNA False 2017-02-03 ENCODE 1, 2 ENCFF006RYF, ENCFF160VXC, ENCFF775NNT, ENCFF834TUP 7262615 ENCODE Processing Pipeline 9bb34a953d7821d9ed2340e5cdb44c03 https://www.encodeproject.org/files/ENCFF885FEE/@@download/ENCFF885FEE.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF802QKE bed narrowPeak peaks ENCSR200JYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB362XEV DNA False 2017-02-03 ENCODE 2 ENCFF006RYF, ENCFF160VXC, ENCFF834TUP 7232749 ENCODE Processing Pipeline c28c2556c0125c990ca144d7b2d07d0e https://www.encodeproject.org/files/ENCFF802QKE/@@download/ENCFF802QKE.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF796SSH bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF552USH, ENCFF577QBK 6958561 ENCODE Processing Pipeline 8a9b82bc9d86cdea5b34591b1303d131 https://www.encodeproject.org/files/ENCFF796SSH/@@download/ENCFF796SSH.bed.gz hg19 released control low read depth, missing genetic modification characterization missing control alignments ENCFF138CUL bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF552USH, ENCFF577QBK, ENCFF845ZLZ 7296018 ENCODE Processing Pipeline 9089567410de069c2ab8b031f9aabad5 https://www.encodeproject.org/files/ENCFF138CUL/@@download/ENCFF138CUL.bed.gz hg19 released control low read depth, missing genetic modification characterization missing control alignments ENCFF373TEW bed narrowPeak peaks ENCSR532KTI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2E2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF577QBK, ENCFF845ZLZ 6929023 ENCODE Processing Pipeline 70ec6f6f31e08f34de4b50bd339f9dd7 https://www.encodeproject.org/files/ENCFF373TEW/@@download/ENCFF373TEW.bed.gz hg19 released control low read depth, missing genetic modification characterization missing control alignments ENCFF001UMB bed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-07-18 ENCODE 1 1 73111 Richard Myers, HAIB cd54504c6d0639983b7f883b3aa7fc3e https://www.encodeproject.org/files/ENCFF001UMB/@@download/ENCFF001UMB.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, insufficient read depth ENCFF001UMC bed broadPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-07-18 ENCODE 2 1 780775 Richard Myers, HAIB 12795568909c4fa8a89df95b3a2f6c09 https://www.encodeproject.org/files/ENCFF001UMC/@@download/ENCFF001UMC.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, insufficient read depth ENCFF701OSU bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-07-18 ENCODE 1 ENCFF189XLI, ENCFF701KUD 2427491 ENCODE Processing Pipeline ecadcaf2b4c40e427cd5818e778ecdad https://www.encodeproject.org/files/ENCFF701OSU/@@download/ENCFF701OSU.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF720DVS bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5822760 ENCODE Processing Pipeline a211c953b14fb046093aa85149bb2475 https://www.encodeproject.org/files/ENCFF720DVS/@@download/ENCFF720DVS.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF223XFI bed narrowPeak peaks ENCSR000BMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF189XLI, ENCFF585PFH, ENCFF701KUD, ENCFF872BSD 5964855 ENCODE Processing Pipeline b9006b9b1bff6e1dfd4026729fc7f6c3 https://www.encodeproject.org/files/ENCFF223XFI/@@download/ENCFF223XFI.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, insufficient read depth ENCFF234YBT bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF465GPJ, ENCFF774NMX 7114931 ENCODE Processing Pipeline 79d418b70086dce5c7e765c1e2642f73 https://www.encodeproject.org/files/ENCFF234YBT/@@download/ENCFF234YBT.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF621JGB bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF774NMX, ENCFF800DAY 7098197 ENCODE Processing Pipeline 1ba4b01a7a46ffd49b60d3c82a7a8f57 https://www.encodeproject.org/files/ENCFF621JGB/@@download/ENCFF621JGB.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF077HXE bed narrowPeak peaks ENCSR091GVJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF1-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF465GPJ, ENCFF774NMX, ENCFF800DAY 7263586 ENCODE Processing Pipeline 649e7a6167a0693ae434010d6aea2ae9 https://www.encodeproject.org/files/ENCFF077HXE/@@download/ENCFF077HXE.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF483OPS bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human ENCAB511TCT DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF277QYK, ENCFF477SGV, ENCFF705ZEH, ENCFF763SGF 6606501 ENCODE Processing Pipeline f989fb04464a87a582f7f149a97c6a87 https://www.encodeproject.org/files/ENCFF483OPS/@@download/ENCFF483OPS.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF822WFQ bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human ENCAB511TCT DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF277QYK, ENCFF477SGV 4658233 ENCODE Processing Pipeline 878975b13bc47e7307609fc440a60b24 https://www.encodeproject.org/files/ENCFF822WFQ/@@download/ENCFF822WFQ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF625DLL bed narrowPeak peaks ENCSR479QAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens U2AF2-human ENCAB511TCT DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF705ZEH, ENCFF763SGF 5167937 ENCODE Processing Pipeline 993512bb20f3eefb5731f9d5dc7a5701 https://www.encodeproject.org/files/ENCFF625DLL/@@download/ENCFF625DLL.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF588BMT bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human ENCAB201MQH DNA False 2018-02-14 ENCODE 2 ENCFF645IUN, ENCFF834TUP 6948885 ENCODE Processing Pipeline b5cafb3c8c8896bbb798add0a04cb77c https://www.encodeproject.org/files/ENCFF588BMT/@@download/ENCFF588BMT.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO, NTR biosample ENCFF967XPK bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human ENCAB201MQH DNA False 2018-02-14 ENCODE 1 ENCFF160VXC, ENCFF528VXT 6699790 ENCODE Processing Pipeline 72163cc058f9eab1dd9b38183d499c79 https://www.encodeproject.org/files/ENCFF967XPK/@@download/ENCFF967XPK.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO, NTR biosample ENCFF736TGQ bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human ENCAB201MQH DNA False 2018-02-14 ENCODE 1, 4 ENCFF023ADT, ENCFF160VXC, ENCFF528VXT, ENCFF834TUP 7145887 ENCODE Processing Pipeline 88355f2ff4342a2d6a710873b0d66cf3 https://www.encodeproject.org/files/ENCFF736TGQ/@@download/ENCFF736TGQ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO, NTR biosample ENCFF632YKL bed narrowPeak peaks ENCSR632TJQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ILF3-human ENCAB201MQH DNA False 2018-02-14 ENCODE 4 ENCFF023ADT, ENCFF834TUP 6307917 ENCODE Processing Pipeline 7f8409e86ae780a6e98d2fce8a97f178 https://www.encodeproject.org/files/ENCFF632YKL/@@download/ENCFF632YKL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO, NTR biosample ENCFF001VNL bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 777725 Michael Snyder, Stanford c9ce493872b283bdc57102c6469aed39 https://www.encodeproject.org/files/ENCFF001VNL/@@download/ENCFF001VNL.bed.gz hg19 archived control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF517QNU bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 2 ENCFF026NGK, ENCFF998GMZ 4438555 ENCODE Processing Pipeline 3214b84988940e0c8d9440e92627a546 https://www.encodeproject.org/files/ENCFF517QNU/@@download/ENCFF517QNU.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF920BWA bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 1 ENCFF792CXJ, ENCFF998GMZ 4768546 ENCODE Processing Pipeline d2ae07c82add76b2ff8ffbc3942cd603 https://www.encodeproject.org/files/ENCFF920BWA/@@download/ENCFF920BWA.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF025ZWJ bed narrowPeak peaks ENCSR000EGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF026NGK, ENCFF792CXJ, ENCFF998GMZ 5406424 ENCODE Processing Pipeline 107166fd128de35831d2948c2c5da9d5 https://www.encodeproject.org/files/ENCFF025ZWJ/@@download/ENCFF025ZWJ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF225XFM bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB707RWG DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF856OQX 6626416 ENCODE Processing Pipeline c669b72e356bca13d4f5c5effb5be7e1 https://www.encodeproject.org/files/ENCFF225XFM/@@download/ENCFF225XFM.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF207WQF bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB707RWG DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF856OQX, ENCFF930YAS 7200356 ENCODE Processing Pipeline 4db7e68cb8bfb15ee5660bf09956c8b5 https://www.encodeproject.org/files/ENCFF207WQF/@@download/ENCFF207WQF.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF204SBR bed narrowPeak peaks ENCSR497VFH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB707RWG DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF930YAS 6487472 ENCODE Processing Pipeline 1f5cc501e5ab23f31a2431cf6090cec3 https://www.encodeproject.org/files/ENCFF204SBR/@@download/ENCFF204SBR.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF001ULH bed broadPeak peaks ENCSR000BNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP2-human ENCAB000AKZ DNA see document see document False 2011-07-18 ENCODE 1 1 62058 Richard Myers, HAIB bd3b339971e77cf8b65a5fe35acb7f97 https://www.encodeproject.org/files/ENCFF001ULH/@@download/ENCFF001ULH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF001ULI bed broadPeak peaks ENCSR000BNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP2-human ENCAB000AKZ DNA see document see document False 2011-07-18 ENCODE 2 1 55191 Richard Myers, HAIB 3a81d510fe3ab04ec3eccb9c89c88207 https://www.encodeproject.org/files/ENCFF001ULI/@@download/ENCFF001ULI.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF869TGI bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF373VCV, ENCFF936MBZ 5921029 ENCODE Processing Pipeline 5368257bee17f7e891c75689b2cf46b8 https://www.encodeproject.org/files/ENCFF869TGI/@@download/ENCFF869TGI.bed.gz hg19 released missing genetic modification characterization ENCFF827LZB bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF124VCI, ENCFF373VCV, ENCFF936MBZ 6731420 ENCODE Processing Pipeline f7013f62747402c1c0cd7c4493d0be63 https://www.encodeproject.org/files/ENCFF827LZB/@@download/ENCFF827LZB.bed.gz hg19 released missing genetic modification characterization ENCFF963EUU bed narrowPeak peaks ENCSR671GFC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TAF7-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF124VCI, ENCFF936MBZ 5923434 ENCODE Processing Pipeline d068345d605435fcf94906b86ce05688 https://www.encodeproject.org/files/ENCFF963EUU/@@download/ENCFF963EUU.bed.gz hg19 released missing genetic modification characterization ENCFF001VRI bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 770970 Kevin White, UChicago 64b38546e77f71b87310cbeb7c3bf5d2 https://www.encodeproject.org/files/ENCFF001VRI/@@download/ENCFF001VRI.bed.gz hg19 archived low read depth, missing genetic modification characterization, low read length missing derived_from insufficient replicate concordance ENCFF185LGX bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1 ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 6732109 ENCODE Processing Pipeline 6389b0de0c4dd822db5e985c1821aee5 https://www.encodeproject.org/files/ENCFF185LGX/@@download/ENCFF185LGX.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF766MMM bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF237CLM, ENCFF479NOE, ENCFF647LGE, ENCFF998TMC 6894146 ENCODE Processing Pipeline 1191f50298ae3451a569e328ac65e919 https://www.encodeproject.org/files/ENCFF766MMM/@@download/ENCFF766MMM.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF444LYN bed narrowPeak peaks ENCSR000DKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GATA2-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 2 ENCFF237CLM, ENCFF998TMC 4401824 ENCODE Processing Pipeline b2a6cdd23e21ed9fac80af72438d8161 https://www.encodeproject.org/files/ENCFF444LYN/@@download/ENCFF444LYN.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF725PEY bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB778OCV DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF357FKU, ENCFF581ZJL, ENCFF791XQO 7262863 ENCODE Processing Pipeline 54ba1f98062c391f062ccdd5e1d221a1 https://www.encodeproject.org/files/ENCFF725PEY/@@download/ENCFF725PEY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF813JVU bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB778OCV DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF791XQO 6793802 ENCODE Processing Pipeline f2494b346b270c93b3bc1584d8375fab https://www.encodeproject.org/files/ENCFF813JVU/@@download/ENCFF813JVU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF883ZAE bed narrowPeak peaks ENCSR502OEK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB778OCV DNA False 2016-07-28 ENCODE 1 ENCFF357FKU, ENCFF581ZJL 6932385 ENCODE Processing Pipeline 973b8e66a7e34eae1cbfafbd7b88fd0a https://www.encodeproject.org/files/ENCFF883ZAE/@@download/ENCFF883ZAE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF441YTV bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF242UOG, ENCFF951SEJ 7188623 ENCODE Processing Pipeline 6ad9d97abd0b21bcd3a5d072ebdef340 https://www.encodeproject.org/files/ENCFF441YTV/@@download/ENCFF441YTV.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF408FLA bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF014ABI, ENCFF242UOG 7154927 ENCODE Processing Pipeline 34514dcce76771f625e9a0f6c1b8e49e https://www.encodeproject.org/files/ENCFF408FLA/@@download/ENCFF408FLA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF519FSK bed narrowPeak peaks ENCSR416QLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPB-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF014ABI, ENCFF242UOG, ENCFF951SEJ 7330610 ENCODE Processing Pipeline b5ec04e6d7e8908d942922c35bb87cf8 https://www.encodeproject.org/files/ENCFF519FSK/@@download/ENCFF519FSK.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF741JEM bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB725ZWB DNA False 2017-11-13 ENCODE 1 ENCFF581ZJL, ENCFF613ITI 6082606 ENCODE Processing Pipeline e9cf509e0928ce9255a8ef9dbf14ea80 https://www.encodeproject.org/files/ENCFF741JEM/@@download/ENCFF741JEM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF640CQW bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB725ZWB DNA False 2017-11-13 ENCODE 3 ENCFF051LWI, ENCFF881KLW 5656188 ENCODE Processing Pipeline e3fc2d90c98c5c1431fc9b5fd6830d4d https://www.encodeproject.org/files/ENCFF640CQW/@@download/ENCFF640CQW.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF618BMZ bed narrowPeak peaks ENCSR138SFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB725ZWB DNA False 2017-11-13 ENCODE 1, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF613ITI, ENCFF881KLW 6933331 ENCODE Processing Pipeline 63dc876bc2caaf2e6eebb33a359d49c7 https://www.encodeproject.org/files/ENCFF618BMZ/@@download/ENCFF618BMZ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking experiment not submitted to GEO ENCFF001VME bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB000AEO DNA see document see document False 2011-10-29 ENCODE 15872 Michael Snyder, Stanford 8b8df75e28cdea9eb62cef888fd2437f https://www.encodeproject.org/files/ENCFF001VME/@@download/ENCFF001VME.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF577SXY bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB000AEO DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF364YIH, ENCFF498SAC, ENCFF732TLR, ENCFF766XHO 6436100 ENCODE Processing Pipeline e902f9498a1bc2c5672b83fbadf98830 https://www.encodeproject.org/files/ENCFF577SXY/@@download/ENCFF577SXY.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF327OZA bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB000AEO DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF766XHO 5195945 ENCODE Processing Pipeline 02e069ab850d2bc8130c4d989a9a0699 https://www.encodeproject.org/files/ENCFF327OZA/@@download/ENCFF327OZA.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF155OWJ bed narrowPeak peaks ENCSR000EHO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB000AEO DNA see document see document False 2011-10-29 ENCODE 1 ENCFF364YIH, ENCFF732TLR 5210342 ENCODE Processing Pipeline dc2afec691eb3571ae809e637ff3341e https://www.encodeproject.org/files/ENCFF155OWJ/@@download/ENCFF155OWJ.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF235BMG bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB000ABD DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT, ENCFF970YTT 6694225 ENCODE Processing Pipeline 8fbe67c8e544b0c77491a647e48ab12c https://www.encodeproject.org/files/ENCFF235BMG/@@download/ENCFF235BMG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF539MNA bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB000ABD DNA see document see document False 2014-07-07 ENCODE 1 ENCFF061QOJ, ENCFF468ZDX, ENCFF636GYT 6192680 ENCODE Processing Pipeline 929042b07cf8f9c996d1039cf9d60363 https://www.encodeproject.org/files/ENCFF539MNA/@@download/ENCFF539MNA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF915TWO bed narrowPeak peaks ENCSR000FCE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB000ABD DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF468ZDX, ENCFF970YTT 6245568 ENCODE Processing Pipeline be53c15e63e17b68db330f759e7bf3e4 https://www.encodeproject.org/files/ENCFF915TWO/@@download/ENCFF915TWO.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF001VMU bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2012-05-14 ENCODE 1199066 Michael Snyder, Stanford 41b1b33137420093e34f6c6f25dd363a https://www.encodeproject.org/files/ENCFF001VMU/@@download/ENCFF001VMU.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF033VDX bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2012-05-14 ENCODE 1 ENCFF058VAU, ENCFF710NTS 5482659 ENCODE Processing Pipeline d15682863af1bf809e031c7812eb0d88 https://www.encodeproject.org/files/ENCFF033VDX/@@download/ENCFF033VDX.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF019DFB bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2012-05-14 ENCODE 2 ENCFF384WMI, ENCFF710NTS 5488272 ENCODE Processing Pipeline 664ac255bd20196d280131b4d8a991c6 https://www.encodeproject.org/files/ENCFF019DFB/@@download/ENCFF019DFB.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF165VLE bed narrowPeak peaks ENCSR000EGJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYC-human ENCAB000AET DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF058VAU, ENCFF384WMI, ENCFF710NTS 6265667 ENCODE Processing Pipeline 1fa1366a66d1a0284ddfb6071f0338be https://www.encodeproject.org/files/ENCFF165VLE/@@download/ENCFF165VLE.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF001VON bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human ENCAB000AKJ DNA see document see document False 2011-10-29 ENCODE 692673 Michael Snyder, Stanford ae84b26b09857dfc02444fcf70734f7e https://www.encodeproject.org/files/ENCFF001VON/@@download/ENCFF001VON.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF536YVV bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human ENCAB000AKJ DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF868YCY 4405762 ENCODE Processing Pipeline 2353777e3b8f76d67d0bf9af71a94f3d https://www.encodeproject.org/files/ENCFF536YVV/@@download/ENCFF536YVV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF439SZI bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human ENCAB000AKJ DNA see document see document False 2011-10-29 ENCODE 2 ENCFF325VWA, ENCFF710NTS 4815522 ENCODE Processing Pipeline 10145ccca4d460e694c04cd4cb50c12e https://www.encodeproject.org/files/ENCFF439SZI/@@download/ENCFF439SZI.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF066GNV bed narrowPeak peaks ENCSR000EGO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX5-human ENCAB000AKJ DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF325VWA, ENCFF710NTS, ENCFF868YCY 5615665 ENCODE Processing Pipeline ecefb6d16a3485a1f3c69a4ec816e60c https://www.encodeproject.org/files/ENCFF066GNV/@@download/ENCFF066GNV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF001VOJ bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human ENCAB000AOB DNA see document see document False 2012-05-14 ENCODE 1785687 Michael Snyder, Stanford 5f7f919615060c200ba047bece218c5e https://www.encodeproject.org/files/ENCFF001VOJ/@@download/ENCFF001VOJ.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF388ATO bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human ENCAB000AOB DNA see document see document False 2012-05-14 ENCODE 1 ENCFF263ZPM, ENCFF710NTS 6963167 ENCODE Processing Pipeline 194e237e1eb582828183e76472f0d467 https://www.encodeproject.org/files/ENCFF388ATO/@@download/ENCFF388ATO.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF932UHC bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human ENCAB000AOB DNA see document see document False 2012-05-14 ENCODE 2 ENCFF207UON, ENCFF710NTS 7095210 ENCODE Processing Pipeline df87abde436c4eb20e311cfa808f3398 https://www.encodeproject.org/files/ENCFF932UHC/@@download/ENCFF932UHC.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF039RTS bed narrowPeak peaks ENCSR000EGF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human ENCAB000AOB DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF207UON, ENCFF263ZPM, ENCFF710NTS 7125640 ENCODE Processing Pipeline 5f5453e828ea7d250f70357dc366c9ea https://www.encodeproject.org/files/ENCFF039RTS/@@download/ENCFF039RTS.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF281ART bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF228QPG, ENCFF319TDX 7026067 ENCODE Processing Pipeline 5490a96c5eee9cf6b27d1b2931a9ab2e https://www.encodeproject.org/files/ENCFF281ART/@@download/ENCFF281ART.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF435TZX bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF102OVJ, ENCFF228QPG, ENCFF319TDX 7276549 ENCODE Processing Pipeline e0a6d3e9fb1237aa90a5a3577bbb95dd https://www.encodeproject.org/files/ENCFF435TZX/@@download/ENCFF435TZX.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF303DKR bed narrowPeak peaks ENCSR632DCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ATF3-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF102OVJ, ENCFF319TDX 6737397 ENCODE Processing Pipeline f3f8b4ff33716b5a73ff5585e6f524b9 https://www.encodeproject.org/files/ENCFF303DKR/@@download/ENCFF303DKR.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001XST bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 1 ENCFF001HTC 862203 John Stamatoyannopoulos, UW e8332ac71efe7497fe88b557ce628c9c https://www.encodeproject.org/files/ENCFF001XST/@@download/ENCFF001XST.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF001XSU bed narrowPeak peaks ENCSR000DWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFP DNA see document see document False 2011-03-17 ENCODE 2 ENCFF001HTD 601656 John Stamatoyannopoulos, UW ac9eb0f49655b416b767f25be87d0f8b https://www.encodeproject.org/files/ENCFF001XSU/@@download/ENCFF001XSU.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF755KRH bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human ENCAB308AOH DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF350QUB, ENCFF667KBF 6487370 ENCODE Processing Pipeline a216a4a8a142f90b0aee3a2415f9346d https://www.encodeproject.org/files/ENCFF755KRH/@@download/ENCFF755KRH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF245CYX bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human ENCAB308AOH DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF281SDB, ENCFF350QUB, ENCFF466QHR, ENCFF667KBF 7138726 ENCODE Processing Pipeline 4a324123598ab014cc6c682fb87eb805 https://www.encodeproject.org/files/ENCFF245CYX/@@download/ENCFF245CYX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF720UBT bed narrowPeak peaks ENCSR506KWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC5-human ENCAB308AOH DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF281SDB, ENCFF466QHR 6492687 ENCODE Processing Pipeline 8a2ad4ae6798b44d209bbe594a30b80e https://www.encodeproject.org/files/ENCFF720UBT/@@download/ENCFF720UBT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF603GSB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human ENCAB282XQE DNA False 2018-02-13 ENCODE 1, 2 ENCFF051LWI, ENCFF226XCD, ENCFF581ZJL, ENCFF895ARY 7279331 ENCODE Processing Pipeline 7f789687bba49fc4c8c383ac37f4a783 https://www.encodeproject.org/files/ENCFF603GSB/@@download/ENCFF603GSB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF148ZUB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human ENCAB282XQE DNA False 2018-02-13 ENCODE 1 ENCFF226XCD, ENCFF581ZJL 7040840 ENCODE Processing Pipeline a472f2327980a114d69596d0764f8fb2 https://www.encodeproject.org/files/ENCFF148ZUB/@@download/ENCFF148ZUB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF315NKB bed narrowPeak peaks ENCSR175EOM ChIP-seq EFO:0002067 K562 cell line Homo sapiens EHMT2-human ENCAB282XQE DNA False 2018-02-13 ENCODE 2 ENCFF051LWI, ENCFF895ARY 6499963 ENCODE Processing Pipeline a110ec62c08db14cd9252d40779c1ef5 https://www.encodeproject.org/files/ENCFF315NKB/@@download/ENCFF315NKB.bed.gz hg19 released antibody characterized with exemption experiment not submitted to GEO ENCFF001VMC bed narrowPeak peaks ENCSR000DOJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF1-human ENCAB000AEM DNA see document see document False 2011-10-29 ENCODE 1975 Kevin Struhl, HMS 2c48e5cbdc23bf72359224b3c7554089 https://www.encodeproject.org/files/ENCFF001VMC/@@download/ENCFF001VMC.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF415MTB bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF424AYM, ENCFF990ZOB 7060962 ENCODE Processing Pipeline 60dfebafea7c06794e27f9c17994ba44 https://www.encodeproject.org/files/ENCFF415MTB/@@download/ENCFF415MTB.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF996DAB bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF130RDX, ENCFF424AYM, ENCFF990ZOB 7376876 ENCODE Processing Pipeline e5bd2c484aaa549f135b6ae7525a4173 https://www.encodeproject.org/files/ENCFF996DAB/@@download/ENCFF996DAB.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF606TEA bed narrowPeak peaks ENCSR532EMP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF740-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF130RDX, ENCFF990ZOB 7210069 ENCODE Processing Pipeline 48f782a7be2f1c2cbeb3286ef0fcc710 https://www.encodeproject.org/files/ENCFF606TEA/@@download/ENCFF606TEA.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF298ANN bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB076QOB DNA False 2016-09-27 ENCODE 1 ENCFF477POF, ENCFF581ZJL 6668549 ENCODE Processing Pipeline fe70ba76f997927a58faceef760078aa https://www.encodeproject.org/files/ENCFF298ANN/@@download/ENCFF298ANN.bed.gz hg19 released ENCFF165WWF bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB076QOB DNA False 2016-09-27 ENCODE 1, 2 ENCFF044ZGL, ENCFF477POF, ENCFF581ZJL 7146513 ENCODE Processing Pipeline b3641340d51f917d043e9927a3333d40 https://www.encodeproject.org/files/ENCFF165WWF/@@download/ENCFF165WWF.bed.gz hg19 released ENCFF232KWI bed narrowPeak peaks ENCSR542WJU ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM7-human ENCAB076QOB DNA False 2016-09-27 ENCODE 2 ENCFF044ZGL, ENCFF581ZJL 6647154 ENCODE Processing Pipeline e5d1fa786643f62b7da74009b2bb1f10 https://www.encodeproject.org/files/ENCFF232KWI/@@download/ENCFF232KWI.bed.gz hg19 released ENCFF001UKD bed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHJ DNA see document see document False 2011-07-18 ENCODE 1 1 312252 Richard Myers, HAIB 482b6e50d699de0d87427a0233cf77c5 https://www.encodeproject.org/files/ENCFF001UKD/@@download/ENCFF001UKD.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF001UKE bed broadPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHJ DNA see document see document False 2011-07-18 ENCODE 2 1 91965 Richard Myers, HAIB ac13d7762a01bf2f68690548a8da33ac https://www.encodeproject.org/files/ENCFF001UKE/@@download/ENCFF001UKE.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from poor library complexity, severe bottlenecking extremely low read depth ENCFF735NAF bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHJ DNA see document see document False 2011-07-18 ENCODE 1 ENCFF223OSD, ENCFF701KUD 2621077 ENCODE Processing Pipeline 2a64b523b1acf836ce4e073673ed2e2c https://www.encodeproject.org/files/ENCFF735NAF/@@download/ENCFF735NAF.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF336UZW bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHJ DNA see document see document False 2011-07-18 ENCODE 2 ENCFF379XXZ, ENCFF701KUD 4384689 ENCODE Processing Pipeline f9bf48178659d146a8e8aa48aae8e4c9 https://www.encodeproject.org/files/ENCFF336UZW/@@download/ENCFF336UZW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF246ENE bed narrowPeak peaks ENCSR000BMG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHJ DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF223OSD, ENCFF379XXZ, ENCFF701KUD 5090337 ENCODE Processing Pipeline 75f9045a738cef7943860b97401736a8 https://www.encodeproject.org/files/ENCFF246ENE/@@download/ENCFF246ENE.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample poor library complexity, severe bottlenecking extremely low read depth ENCFF001VNA bed narrowPeak peaks ENCSR000EWJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-10-29 ENCODE 277843 Peggy Farnham, USC a4e704534e23245c58a832ba1a0b0fba https://www.encodeproject.org/files/ENCFF001VNA/@@download/ENCFF001VNA.bed.gz hg19 archived mixed read lengths biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF001VNJ bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human ENCAB000AHW DNA see document see document False 2011-10-29 ENCODE 11198 Michael Snyder, Stanford 566bc3cbb717536c65406705379f91c9 https://www.encodeproject.org/files/ENCFF001VNJ/@@download/ENCFF001VNJ.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length ENCFF790RYU bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human ENCAB000AHW DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR 5598548 ENCODE Processing Pipeline b32947328791f45a48f53c1fdbec9f7e https://www.encodeproject.org/files/ENCFF790RYU/@@download/ENCFF790RYU.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF318HRX bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human ENCAB000AHW DNA see document see document False 2011-10-29 ENCODE 2 ENCFF498SAC, ENCFF752FZP 4637578 ENCODE Processing Pipeline ccc246bc6aff2f88324d1564a514cd48 https://www.encodeproject.org/files/ENCFF318HRX/@@download/ENCFF318HRX.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF573QSE bed narrowPeak peaks ENCSR000EHN ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCB1-human ENCAB000AHW DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF498SAC, ENCFF541YJQ, ENCFF732TLR, ENCFF752FZP 6194534 ENCODE Processing Pipeline a138d372bad6dfdb6a60da64b6ffd555 https://www.encodeproject.org/files/ENCFF573QSE/@@download/ENCFF573QSE.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment biological replicates with identical biosample insufficient read length ENCFF001UKR bed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human ENCAB000AOD DNA see document see document False 2011-07-18 ENCODE 1 1 413957 Richard Myers, HAIB 8b0e92f2c22e3a57cd52c99ea7405de8 https://www.encodeproject.org/files/ENCFF001UKR/@@download/ENCFF001UKR.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth ENCFF001UKS bed broadPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human ENCAB000AOD DNA see document see document False 2011-07-18 ENCODE 2 1 795112 Richard Myers, HAIB 9ef9969ecd0c72beb4ca583b9935b0fd https://www.encodeproject.org/files/ENCFF001UKS/@@download/ENCFF001UKS.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth ENCFF519QQX bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human ENCAB000AOD DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF788MNU 5120602 ENCODE Processing Pipeline 85d929ad32fc06df986203b6fc53cdcf https://www.encodeproject.org/files/ENCFF519QQX/@@download/ENCFF519QQX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF065RJC bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human ENCAB000AOD DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF196OAS, ENCFF750MIM, ENCFF788MNU 6501159 ENCODE Processing Pipeline 07a3dff1a8001a9b8ba175f7a041e0dc https://www.encodeproject.org/files/ENCFF065RJC/@@download/ENCFF065RJC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF306TSB bed narrowPeak peaks ENCSR000BKR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS5-human ENCAB000AOD DNA see document see document False 2011-07-18 ENCODE 2 ENCFF196OAS, ENCFF750MIM 6039123 ENCODE Processing Pipeline c11321251b025b40027c6c8665b8ea7a https://www.encodeproject.org/files/ENCFF306TSB/@@download/ENCFF306TSB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth ENCFF786SHU bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB708RYV DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF690URW 6674084 ENCODE Processing Pipeline 5ffc9373da303fbbce7ff3bcee792941 https://www.encodeproject.org/files/ENCFF786SHU/@@download/ENCFF786SHU.bed.gz hg19 released low read depth ENCFF428HHR bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB708RYV DNA False 2016-06-14 ENCODE 1 ENCFF208HMF, ENCFF581ZJL 6312651 ENCODE Processing Pipeline 7b8c9af1b060b40e547da91d419384f4 https://www.encodeproject.org/files/ENCFF428HHR/@@download/ENCFF428HHR.bed.gz hg19 released low read depth ENCFF633IWB bed narrowPeak peaks ENCSR931HNY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB708RYV DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF208HMF, ENCFF581ZJL, ENCFF690URW 7176680 ENCODE Processing Pipeline b908015cbd5ccd5a2dda5c8ea4cd6dc2 https://www.encodeproject.org/files/ENCFF633IWB/@@download/ENCFF633IWB.bed.gz hg19 released low read depth ENCFF917NDP bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB062SOF DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF571KDO, ENCFF658KLO, ENCFF834TUP 7281434 ENCODE Processing Pipeline 22be7271bc049d3a511eb197c0c71f03 https://www.encodeproject.org/files/ENCFF917NDP/@@download/ENCFF917NDP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF162LKJ bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB062SOF DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF571KDO, ENCFF834TUP 6957983 ENCODE Processing Pipeline 7320713e5f6becb5840da5d1bc1c7f89 https://www.encodeproject.org/files/ENCFF162LKJ/@@download/ENCFF162LKJ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF550GTF bed narrowPeak peaks ENCSR349TZO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB062SOF DNA False 2018-01-26 ENCODE 2 ENCFF658KLO, ENCFF834TUP 7036947 ENCODE Processing Pipeline 8cd478c9e0feffc9ef67b0abe72cf734 https://www.encodeproject.org/files/ENCFF550GTF/@@download/ENCFF550GTF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF804AYO bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF139VKC, ENCFF968SMN 6110096 ENCODE Processing Pipeline 5794fc2a4328b650b1c513b414fb8761 https://www.encodeproject.org/files/ENCFF804AYO/@@download/ENCFF804AYO.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF331IWR bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF139VKC, ENCFF746MMS 6433989 ENCODE Processing Pipeline 8b87c22a1102272fd3558db70746d291 https://www.encodeproject.org/files/ENCFF331IWR/@@download/ENCFF331IWR.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF982UOO bed narrowPeak peaks ENCSR596IKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETS2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF139VKC, ENCFF746MMS, ENCFF968SMN 6975338 ENCODE Processing Pipeline 859b1874edcfbdb6ff6c90c8071fb9af https://www.encodeproject.org/files/ENCFF982UOO/@@download/ENCFF982UOO.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking missing control alignments ENCFF001VMR bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 80854 Sherman Weissman, Yale eac64e0aefa6def263bf52c0913fd11d https://www.encodeproject.org/files/ENCFF001VMR/@@download/ENCFF001VMR.bed.gz hg19 archived mixed read lengths, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF028OCG bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1 ENCFF834GPI, ENCFF998GMZ 3212789 ENCODE Processing Pipeline ed9641efadb73b9a2d36f0187bb15fd8 https://www.encodeproject.org/files/ENCFF028OCG/@@download/ENCFF028OCG.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF837BDB bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 2 ENCFF203FSU, ENCFF998GMZ 3858506 ENCODE Processing Pipeline 9daa2ed65158062bc55f643142b2d1bc https://www.encodeproject.org/files/ENCFF837BDB/@@download/ENCFF837BDB.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF951BWR bed narrowPeak peaks ENCSR000EZV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF203FSU, ENCFF834GPI, ENCFF998GMZ 5036397 ENCODE Processing Pipeline 55c27479c67c84b1bd80da3ed3f710d0 https://www.encodeproject.org/files/ENCFF951BWR/@@download/ENCFF951BWR.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF799NMK bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB000BCL DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF750PMI 6794130 ENCODE Processing Pipeline dc1143c5fb672ca9b5a0bf818538506d https://www.encodeproject.org/files/ENCFF799NMK/@@download/ENCFF799NMK.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF595GHN bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB000BCL DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF510XHR, ENCFF581ZJL, ENCFF750PMI 7151498 ENCODE Processing Pipeline e099eb679c86628154d85fb234b9c010 https://www.encodeproject.org/files/ENCFF595GHN/@@download/ENCFF595GHN.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF846YPA bed narrowPeak peaks ENCSR512NLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB000BCL DNA False 2017-05-17 ENCODE 1 ENCFF510XHR, ENCFF581ZJL 6969714 ENCODE Processing Pipeline 62e5ebddd24974b5d6e8e6dbb6cc0480 https://www.encodeproject.org/files/ENCFF846YPA/@@download/ENCFF846YPA.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF674FOQ bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB097XCT DNA False 2016-06-14 ENCODE 1 ENCFF239DXH, ENCFF581ZJL 6613524 ENCODE Processing Pipeline 68b5c4aee6f13205eba0cc76e6b34593 https://www.encodeproject.org/files/ENCFF674FOQ/@@download/ENCFF674FOQ.bed.gz hg19 released low read depth missing control alignments ENCFF235FNK bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB097XCT DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF239DXH, ENCFF581ZJL, ENCFF943WPZ 7244029 ENCODE Processing Pipeline 9badfc32837ff8bfaac8d89424f31cba https://www.encodeproject.org/files/ENCFF235FNK/@@download/ENCFF235FNK.bed.gz hg19 released low read depth missing control alignments ENCFF338NAH bed narrowPeak peaks ENCSR657EOF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB097XCT DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF943WPZ 6424347 ENCODE Processing Pipeline a0e6904c4853be483cc4109cec75962b https://www.encodeproject.org/files/ENCFF338NAH/@@download/ENCFF338NAH.bed.gz hg19 released low read depth missing control alignments ENCFF106WRW bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human ENCAB854ATP DNA False 2016-06-28 ENCODE 1 ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 6366354 ENCODE Processing Pipeline 87292ab1949c87c6aaaff0e84e4cf796 https://www.encodeproject.org/files/ENCFF106WRW/@@download/ENCFF106WRW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF134OVY bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human ENCAB854ATP DNA False 2016-06-28 ENCODE 1, 2 ENCFF361KFD, ENCFF444TNY, ENCFF688UQF, ENCFF847YDJ 7106902 ENCODE Processing Pipeline 82477c0d9e81006cd37be7bcac866750 https://www.encodeproject.org/files/ENCFF134OVY/@@download/ENCFF134OVY.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF604XWK bed narrowPeak peaks ENCSR707QWA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F6-human ENCAB854ATP DNA False 2016-06-28 ENCODE 2 ENCFF361KFD, ENCFF444TNY, ENCFF847YDJ 6853798 ENCODE Processing Pipeline 0ce20453e7cc72bebc28e6ce7dddc3cf https://www.encodeproject.org/files/ENCFF604XWK/@@download/ENCFF604XWK.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF001UJN bed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1 1 133235 Richard Myers, HAIB 494cf2eb4a4e61af4f28cbdabb92e34f https://www.encodeproject.org/files/ENCFF001UJN/@@download/ENCFF001UJN.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001UJO bed broadPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 2 1 205299 Richard Myers, HAIB 46c1731bacab7c50cbc3bdafe122866b https://www.encodeproject.org/files/ENCFF001UJO/@@download/ENCFF001UJO.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF504VLL bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 3854933 ENCODE Processing Pipeline 7b78071f18880830ee29c30fccc52ff4 https://www.encodeproject.org/files/ENCFF504VLL/@@download/ENCFF504VLL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF233FNU bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF097SZB, ENCFF235CSW, ENCFF487BCT, ENCFF750MIM 4205550 ENCODE Processing Pipeline 7e134d0a151c975273856ba8f4c3c78a https://www.encodeproject.org/files/ENCFF233FNU/@@download/ENCFF233FNU.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF035SJF bed narrowPeak peaks ENCSR000BNK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCFL-human ENCAB000AFS DNA see document see document False 2011-07-18 ENCODE 1 ENCFF097SZB, ENCFF235CSW, ENCFF750MIM 1679734 ENCODE Processing Pipeline 04bffe0c515af4aa90eeb9bb482f4cd8 https://www.encodeproject.org/files/ENCFF035SJF/@@download/ENCFF035SJF.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF611BUY bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human ENCAB000BMO DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF796HOG 7178552 ENCODE Processing Pipeline 0318f8b1097e2c3bce0291956fb04434 https://www.encodeproject.org/files/ENCFF611BUY/@@download/ENCFF611BUY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF606UFV bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human ENCAB000BMO DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF838YGO 6919933 ENCODE Processing Pipeline a4987ffd1ba8dadf8170584cd35048f4 https://www.encodeproject.org/files/ENCFF606UFV/@@download/ENCFF606UFV.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF821WIF bed narrowPeak peaks ENCSR972ZBV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF7-human ENCAB000BMO DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF796HOG, ENCFF838YGO 7254053 ENCODE Processing Pipeline c4a226a953fbb7ec3c9a7f9e462228bc https://www.encodeproject.org/files/ENCFF821WIF/@@download/ENCFF821WIF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF552VIT bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human ENCAB026YMP DNA False 2018-01-26 ENCODE 1 ENCFF592SCF, ENCFF834TUP 6153758 ENCODE Processing Pipeline e0c6f5872a6ab62f22c4015014fdef3c https://www.encodeproject.org/files/ENCFF552VIT/@@download/ENCFF552VIT.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF789TXE bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human ENCAB026YMP DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF574VVE, ENCFF834TUP 6766713 ENCODE Processing Pipeline aae04d472a2b3903a8809739fb6c9195 https://www.encodeproject.org/files/ENCFF789TXE/@@download/ENCFF789TXE.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF874KMM bed narrowPeak peaks ENCSR142YYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens EWSR1-human ENCAB026YMP DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF574VVE, ENCFF592SCF, ENCFF834TUP 7065247 ENCODE Processing Pipeline f8814c2f996dbe02e85b0fc6bf635d35 https://www.encodeproject.org/files/ENCFF874KMM/@@download/ENCFF874KMM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF689MDM bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB469ASP DNA False 2017-11-14 ENCODE 1 ENCFF537OYZ, ENCFF581ZJL 6112109 ENCODE Processing Pipeline ba9ba9833b4606e9d3debe09a73a6551 https://www.encodeproject.org/files/ENCFF689MDM/@@download/ENCFF689MDM.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF553YOE bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB469ASP DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF581ZJL, ENCFF592CXW 6877299 ENCODE Processing Pipeline 2122823fc7452aab434f82f1125070f4 https://www.encodeproject.org/files/ENCFF553YOE/@@download/ENCFF553YOE.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF363BOT bed narrowPeak peaks ENCSR315NNL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB469ASP DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF537OYZ, ENCFF581ZJL, ENCFF592CXW 7144344 ENCODE Processing Pipeline fec12b7e8352b8a6301b1dab0f1dd32a https://www.encodeproject.org/files/ENCFF363BOT/@@download/ENCFF363BOT.bed.gz hg19 released low read depth experiment not submitted to GEO ENCFF809LWB bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB155MHN DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF413UYN, ENCFF834TUP 7045721 ENCODE Processing Pipeline c6282301855b3803875411aa81deaee3 https://www.encodeproject.org/files/ENCFF809LWB/@@download/ENCFF809LWB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF676OHT bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB155MHN DNA False 2018-01-26 ENCODE 2 ENCFF314DOH, ENCFF834TUP 6953879 ENCODE Processing Pipeline 87d3691a0c6d969aeb56a7364ef2b65b https://www.encodeproject.org/files/ENCFF676OHT/@@download/ENCFF676OHT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF208GKL bed narrowPeak peaks ENCSR803EKW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA2-human ENCAB155MHN DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF314DOH, ENCFF413UYN, ENCFF834TUP 7209568 ENCODE Processing Pipeline 4cfd366e6eee1a6eec4215051bf7afef https://www.encodeproject.org/files/ENCFF208GKL/@@download/ENCFF208GKL.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF903CMR bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 5463308 ENCODE Processing Pipeline 62a7c136c7f270aafa1a4fac94b275f7 https://www.encodeproject.org/files/ENCFF903CMR/@@download/ENCFF903CMR.bed.gz hg19 released low read length ENCFF663ORW bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5124788 ENCODE Processing Pipeline 8684d01437d6b6e47679a749aacccb94 https://www.encodeproject.org/files/ENCFF663ORW/@@download/ENCFF663ORW.bed.gz hg19 released low read length ENCFF084ZRH bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 6582440 ENCODE Processing Pipeline 4bc00609b7376f5ca21105ebd930e822 https://www.encodeproject.org/files/ENCFF084ZRH/@@download/ENCFF084ZRH.bed.gz hg19 released low read length ENCFF063GMG bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 1, 3 ENCFF147VCN, ENCFF335IPE, ENCFF852RLW, ENCFF879OQC 6729858 ENCODE Processing Pipeline a9f8443f4492d3091639f0cd7a56157d https://www.encodeproject.org/files/ENCFF063GMG/@@download/ENCFF063GMG.bed.gz hg19 archived low read length ENCFF135VWG bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 3 ENCFF852RLW, ENCFF879OQC 5660342 ENCODE Processing Pipeline b7a0aac41ac7f624fc8866dbfd8e2129 https://www.encodeproject.org/files/ENCFF135VWG/@@download/ENCFF135VWG.bed.gz hg19 archived low read length ENCFF770GWM bed narrowPeak peaks ENCSR376WCJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens IRF2-human ENCAB001RIV DNA False 2014-07-07 ENCODE 1 ENCFF147VCN, ENCFF335IPE 5247189 ENCODE Processing Pipeline ae86b2319905c3bbce4a66fa7affa0a3 https://www.encodeproject.org/files/ENCFF770GWM/@@download/ENCFF770GWM.bed.gz hg19 archived low read length ENCFF716GBZ bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4513228 ENCODE Processing Pipeline 38f599db4f85e1edafe6c586428f50b8 https://www.encodeproject.org/files/ENCFF716GBZ/@@download/ENCFF716GBZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF554XAI bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 4855004 ENCODE Processing Pipeline 98de65987c0e66bbad86c88c52ff043c https://www.encodeproject.org/files/ENCFF554XAI/@@download/ENCFF554XAI.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF826WTJ bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 6109573 ENCODE Processing Pipeline 852cdd025106af4eb8bcf0df3f208109 https://www.encodeproject.org/files/ENCFF826WTJ/@@download/ENCFF826WTJ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF916KLD bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 2 ENCFF295KFF, ENCFF879OQC 5050350 ENCODE Processing Pipeline d8a3931ec7358fc3503f9890169714fb https://www.encodeproject.org/files/ENCFF916KLD/@@download/ENCFF916KLD.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF405AOP bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF592VTW 4718152 ENCODE Processing Pipeline 66a344d1223b1829dba0c2f3c5e1cc85 https://www.encodeproject.org/files/ENCFF405AOP/@@download/ENCFF405AOP.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF085MZN bed narrowPeak peaks ENCSR815ZDS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SREBF1-human ENCAB000ALC DNA False 2014-07-07 ENCODE 1, 2 ENCFF295KFF, ENCFF335IPE, ENCFF592VTW, ENCFF879OQC 6265867 ENCODE Processing Pipeline 04b57985a2d895f62d03391011084640 https://www.encodeproject.org/files/ENCFF085MZN/@@download/ENCFF085MZN.bed.gz hg19 archived borderline replicate concordance, low read depth, antibody characterized with exemption, low read length ENCFF768INF bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human ENCAB000BDY DNA False 2014-07-07 ENCODE 1 ENCFF032JWA, ENCFF335IPE 4634504 ENCODE Processing Pipeline 60e806c1ceb638a3a0c87f1778337a5c https://www.encodeproject.org/files/ENCFF768INF/@@download/ENCFF768INF.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF705MDG bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human ENCAB000BDY DNA False 2014-07-07 ENCODE 2 ENCFF252WJR, ENCFF879OQC 3785736 ENCODE Processing Pipeline 6905e36337bfbfc3113c08a7dce94ecd https://www.encodeproject.org/files/ENCFF705MDG/@@download/ENCFF705MDG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF272EQO bed narrowPeak peaks ENCSR364SNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens POU5F1-human ENCAB000BDY DNA False 2014-07-07 ENCODE 1, 2 ENCFF032JWA, ENCFF252WJR, ENCFF335IPE, ENCFF879OQC 5706825 ENCODE Processing Pipeline 1958202674fdc72b78f63b1d6f780df9 https://www.encodeproject.org/files/ENCFF272EQO/@@download/ENCFF272EQO.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO partially characterized antibody ENCFF067DNS bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB222KVZ DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF324TIY, ENCFF554KBV, ENCFF581ZJL 7211675 ENCODE Processing Pipeline c9ae1d1b3ddb3b60ec351321987dc636 https://www.encodeproject.org/files/ENCFF067DNS/@@download/ENCFF067DNS.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF370RXL bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB222KVZ DNA False 2016-11-10 ENCODE 1 ENCFF051LWI, ENCFF324TIY 6491769 ENCODE Processing Pipeline e4a41a2fa968685a3a194a553f6db1dd https://www.encodeproject.org/files/ENCFF370RXL/@@download/ENCFF370RXL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF904CJM bed narrowPeak peaks ENCSR011NOZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB222KVZ DNA False 2016-11-10 ENCODE 2 ENCFF554KBV, ENCFF581ZJL 6838004 ENCODE Processing Pipeline 8c3b46431cc070beac03de662698d275 https://www.encodeproject.org/files/ENCFF904CJM/@@download/ENCFF904CJM.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF361FQK bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human ENCAB150NID DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF454ZDW 5521548 ENCODE Processing Pipeline 546f0aed9f7d2c4d9afeb14cb1c1159f https://www.encodeproject.org/files/ENCFF361FQK/@@download/ENCFF361FQK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF978SSL bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human ENCAB150NID DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ 5968427 ENCODE Processing Pipeline 25f52f43840b144d07c960e5eafe18e9 https://www.encodeproject.org/files/ENCFF978SSL/@@download/ENCFF978SSL.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF843XJF bed narrowPeak peaks ENCSR272JAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX5-human ENCAB150NID DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF135QBJ, ENCFF454ZDW 6501047 ENCODE Processing Pipeline cc4a92f0c29867bfd253d5b2e84101ef https://www.encodeproject.org/files/ENCFF843XJF/@@download/ENCFF843XJF.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF001ULS bed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human ENCAB000ALY DNA see document see document False 2011-07-18 ENCODE 1 1 66359 Richard Myers, HAIB 507c6f9dcb6ee1c3db45c9de3ee24fe4 https://www.encodeproject.org/files/ENCFF001ULS/@@download/ENCFF001ULS.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001ULU bed broadPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human ENCAB000ALY DNA see document see document False 2011-07-18 ENCODE 2 1 67685 Richard Myers, HAIB a00ddf10b1437f02ac05bfd15d847a67 https://www.encodeproject.org/files/ENCFF001ULU/@@download/ENCFF001ULU.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF508HQW bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human ENCAB000ALY DNA see document see document False 2011-07-18 ENCODE 1 ENCFF132LHA, ENCFF750MIM 4290623 ENCODE Processing Pipeline 1aa4372b810d58821068a34162f0722a https://www.encodeproject.org/files/ENCFF508HQW/@@download/ENCFF508HQW.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF495GTU bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human ENCAB000ALY DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF132LHA, ENCFF670GGQ, ENCFF750MIM 4784128 ENCODE Processing Pipeline 29c836e67caa341c667c48106cf1c9f6 https://www.encodeproject.org/files/ENCFF495GTU/@@download/ENCFF495GTU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF331SRY bed narrowPeak peaks ENCSR000BNN ChIP-seq EFO:0002067 K562 cell line Homo sapiens THAP1-human ENCAB000ALY DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670GGQ, ENCFF750MIM 3812396 ENCODE Processing Pipeline f3876383ef270f662acdd18de7596855 https://www.encodeproject.org/files/ENCFF331SRY/@@download/ENCFF331SRY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF456OOM bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human ENCAB949JPE DNA False 2018-01-31 ENCODE 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV 6854542 ENCODE Processing Pipeline e6e4d52162a7d18e475756a33fdeb8b6 https://www.encodeproject.org/files/ENCFF456OOM/@@download/ENCFF456OOM.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF581AQD bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human ENCAB949JPE DNA False 2018-01-31 ENCODE 1, 2 ENCFF094TQU, ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 7228196 ENCODE Processing Pipeline c461aab5b9f774a56dd3b5460e43bec1 https://www.encodeproject.org/files/ENCFF581AQD/@@download/ENCFF581AQD.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF858GTB bed narrowPeak peaks ENCSR898XMH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP91-human ENCAB949JPE DNA False 2018-01-31 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF592NKP 7008531 ENCODE Processing Pipeline c84638b834a4dfdbe88ee45d048f0ae4 https://www.encodeproject.org/files/ENCFF858GTB/@@download/ENCFF858GTB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF671OTI bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human ENCAB415SKT DNA False 2016-09-01 ENCODE 1 ENCFF207OPF, ENCFF581ZJL 6525471 ENCODE Processing Pipeline a33f2e2aa0d57c1b11a69c5be5a45e49 https://www.encodeproject.org/files/ENCFF671OTI/@@download/ENCFF671OTI.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF023FAR bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human ENCAB415SKT DNA False 2016-09-01 ENCODE 2 ENCFF461OLA, ENCFF581ZJL 6198170 ENCODE Processing Pipeline 5c9f75fe0e7e582caaf556099b29c7c9 https://www.encodeproject.org/files/ENCFF023FAR/@@download/ENCFF023FAR.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF763LNG bed narrowPeak peaks ENCSR086FZL ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT8-human ENCAB415SKT DNA False 2016-09-01 ENCODE 1, 2 ENCFF207OPF, ENCFF461OLA, ENCFF581ZJL 6962841 ENCODE Processing Pipeline a1a112d8ec82a48b8cd6673b117f2837 https://www.encodeproject.org/files/ENCFF763LNG/@@download/ENCFF763LNG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF260JMM bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB541WYB DNA False 2017-01-27 ENCODE 2 ENCFF318HXV, ENCFF834TUP 7100744 ENCODE Processing Pipeline 088d643e4c1e293ba708b5d62b327189 https://www.encodeproject.org/files/ENCFF260JMM/@@download/ENCFF260JMM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF431KXB bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB541WYB DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF318HXV, ENCFF834TUP, ENCFF899ORC 7285470 ENCODE Processing Pipeline 45bdf9d882d751aef8b239239586d983 https://www.encodeproject.org/files/ENCFF431KXB/@@download/ENCFF431KXB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF191KTX bed narrowPeak peaks ENCSR390VGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB541WYB DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF899ORC 6850176 ENCODE Processing Pipeline d6d781cc28f8d5798a2b30c9215d71be https://www.encodeproject.org/files/ENCFF191KTX/@@download/ENCFF191KTX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF759MWN bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human ENCAB605GOL DNA False 2016-07-08 ENCODE 1 ENCFF085AZW, ENCFF581ZJL 6464456 ENCODE Processing Pipeline 3e6b7da4081d167ce8628755eb7f42ae https://www.encodeproject.org/files/ENCFF759MWN/@@download/ENCFF759MWN.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF513RYS bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human ENCAB605GOL DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF295OIX 6709320 ENCODE Processing Pipeline f9c73cee15733bf6764b14d01bb16516 https://www.encodeproject.org/files/ENCFF513RYS/@@download/ENCFF513RYS.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF826QEY bed narrowPeak peaks ENCSR869IUD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF2-human ENCAB605GOL DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF085AZW, ENCFF295OIX, ENCFF581ZJL 7152191 ENCODE Processing Pipeline 93a0fdf61a4e8b49dfc4e0433fdf04ae https://www.encodeproject.org/files/ENCFF826QEY/@@download/ENCFF826QEY.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF149SPA bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB297MIF DNA False 2017-09-28 ENCODE 2 ENCFF035ZYM, ENCFF051LWI 6948836 ENCODE Processing Pipeline 1c1779bba1510798d565851ba88f06cf https://www.encodeproject.org/files/ENCFF149SPA/@@download/ENCFF149SPA.bed.gz hg19 released ENCFF080VTW bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB297MIF DNA False 2017-09-28 ENCODE 1 ENCFF428MEC, ENCFF581ZJL 7037676 ENCODE Processing Pipeline 505f5c7a83b186acdf5416a5758462b7 https://www.encodeproject.org/files/ENCFF080VTW/@@download/ENCFF080VTW.bed.gz hg19 released ENCFF084IPF bed narrowPeak peaks ENCSR711VWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB297MIF DNA False 2017-09-28 ENCODE 1, 2 ENCFF035ZYM, ENCFF051LWI, ENCFF428MEC, ENCFF581ZJL 7220662 ENCODE Processing Pipeline a31b3478993be6c163f55a08be7b82d1 https://www.encodeproject.org/files/ENCFF084IPF/@@download/ENCFF084IPF.bed.gz hg19 released ENCFF695WCL bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6583780 ENCODE Processing Pipeline e6983af2a0a7532c4c8b4d4d3a1a9080 https://www.encodeproject.org/files/ENCFF695WCL/@@download/ENCFF695WCL.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF914GVW bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6921612 ENCODE Processing Pipeline 8cfeba5ecb646957e24b36fb21b73f6b https://www.encodeproject.org/files/ENCFF914GVW/@@download/ENCFF914GVW.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF896HIP bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 7234229 ENCODE Processing Pipeline f08984dadeadf0ca7ec433bf21aa190a https://www.encodeproject.org/files/ENCFF896HIP/@@download/ENCFF896HIP.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF719MEC bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF274ZBZ, ENCFF581ZJL, ENCFF950GGY 7249645 ENCODE Processing Pipeline 68858fd2b2be45acbdab1c2ea2759df5 https://www.encodeproject.org/files/ENCFF719MEC/@@download/ENCFF719MEC.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF596CWP bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF950GGY 6695065 ENCODE Processing Pipeline ef13e3b8be36e873b31da94086526824 https://www.encodeproject.org/files/ENCFF596CWP/@@download/ENCFF596CWP.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF893FDT bed narrowPeak peaks ENCSR109YGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREB3L1-human ENCAB336DFB DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF274ZBZ 6996985 ENCODE Processing Pipeline 923708270fe325cf05efb068175c9b1f https://www.encodeproject.org/files/ENCFF893FDT/@@download/ENCFF893FDT.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF001VNK bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 62876 Michael Snyder, Stanford 61e18337bdb14560478c340a0c5ff88f https://www.encodeproject.org/files/ENCFF001VNK/@@download/ENCFF001VNK.bed.gz hg19 archived mixed read lengths, control low read depth, borderline replicate concordance, low read depth, low read length biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth missing control alignments ENCFF467GRI bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF703RUQ 3615122 ENCODE Processing Pipeline dc0cfa0a67c7c5b32f08bf16d2422fc9 https://www.encodeproject.org/files/ENCFF467GRI/@@download/ENCFF467GRI.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth missing control alignments ENCFF219ASD bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF987HMV 1312157 ENCODE Processing Pipeline ba4142a08406d6848b8a81ea3f408093 https://www.encodeproject.org/files/ENCFF219ASD/@@download/ENCFF219ASD.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth missing control alignments ENCFF879FJY bed narrowPeak peaks ENCSR000EGU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF703RUQ, ENCFF987HMV 3968756 ENCODE Processing Pipeline 6b8025ab93e2ea417d308144f5921a3f https://www.encodeproject.org/files/ENCFF879FJY/@@download/ENCFF879FJY.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth missing control alignments ENCFF221YZK bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB508CZJ DNA False 2016-06-14 ENCODE 1 ENCFF530XAQ, ENCFF581ZJL 6885176 ENCODE Processing Pipeline c1e525a49f7412ded1a318d271cfeeda https://www.encodeproject.org/files/ENCFF221YZK/@@download/ENCFF221YZK.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF873ZUQ bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB508CZJ DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF233IID 6929067 ENCODE Processing Pipeline e474c90e1cb307a33e2f01fe1d28d6e2 https://www.encodeproject.org/files/ENCFF873ZUQ/@@download/ENCFF873ZUQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF113GBF bed narrowPeak peaks ENCSR387UWP ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB508CZJ DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF233IID, ENCFF530XAQ, ENCFF581ZJL 7265651 ENCODE Processing Pipeline 71b3437d73c0c5e183b5f44e7c76ae45 https://www.encodeproject.org/files/ENCFF113GBF/@@download/ENCFF113GBF.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF631AZA bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB375FHW DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF208FMF, ENCFF421LSY, ENCFF581ZJL 7218198 ENCODE Processing Pipeline 62e7b00cb9cfd781b29facac5ff13921 https://www.encodeproject.org/files/ENCFF631AZA/@@download/ENCFF631AZA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF596YYO bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB375FHW DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF421LSY 6691760 ENCODE Processing Pipeline 21e99697f4e8c0277093c77dc32879dc https://www.encodeproject.org/files/ENCFF596YYO/@@download/ENCFF596YYO.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF607MDM bed narrowPeak peaks ENCSR051OUX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB375FHW DNA False 2018-01-26 ENCODE 1 ENCFF208FMF, ENCFF581ZJL 6879508 ENCODE Processing Pipeline 745e46fe25c71f7f3cc3aeec874591ee https://www.encodeproject.org/files/ENCFF607MDM/@@download/ENCFF607MDM.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF037FVZ bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human ENCAB262WBH DNA False 2016-03-30 ENCODE 1, 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 7031469 ENCODE Processing Pipeline feb220c189b97d59af29b24ea583b4fe https://www.encodeproject.org/files/ENCFF037FVZ/@@download/ENCFF037FVZ.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF052IOC bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human ENCAB262WBH DNA False 2016-03-30 ENCODE 1 ENCFF227XXD, ENCFF454QBD, ENCFF986BOM 6746160 ENCODE Processing Pipeline bd04ead3bc991eac41605e6d188659e2 https://www.encodeproject.org/files/ENCFF052IOC/@@download/ENCFF052IOC.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF514IDT bed narrowPeak peaks ENCSR757IIU ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMBOX1-human ENCAB262WBH DNA False 2016-03-30 ENCODE 2 ENCFF225PIB, ENCFF227XXD, ENCFF454QBD 6597708 ENCODE Processing Pipeline a21edc00eb3fd7ccf328b299898d43ae https://www.encodeproject.org/files/ENCFF514IDT/@@download/ENCFF514IDT.bed.gz hg19 released moderate library complexity severe bottlenecking ENCFF961ADP bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF181PST, ENCFF559EGU 7002170 ENCODE Processing Pipeline 6ece835dcbdf4828c1f339abadab621f https://www.encodeproject.org/files/ENCFF961ADP/@@download/ENCFF961ADP.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF857RCJ bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF181PST, ENCFF559EGU, ENCFF602FUW 7224900 ENCODE Processing Pipeline 54181619aa6c737d06304a79dfb147f5 https://www.encodeproject.org/files/ENCFF857RCJ/@@download/ENCFF857RCJ.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF814SES bed narrowPeak peaks ENCSR854MCV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-IRF1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF181PST, ENCFF602FUW 6403721 ENCODE Processing Pipeline adcbd23aff63735c0557f15b852f6b3c https://www.encodeproject.org/files/ENCFF814SES/@@download/ENCFF814SES.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization, mild to moderate bottlenecking, low read depth, moderate library complexity ENCFF001VML bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 40087 Sherman Weissman, Yale 7e467221e96e897de9d5ee0f78142062 https://www.encodeproject.org/files/ENCFF001VML/@@download/ENCFF001VML.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF041POZ bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278VAK, ENCFF998GMZ 2532916 ENCODE Processing Pipeline adf8683858265f42f5494538a255772b https://www.encodeproject.org/files/ENCFF041POZ/@@download/ENCFF041POZ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF829NXG bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1 ENCFF573AFD, ENCFF998GMZ 2294461 ENCODE Processing Pipeline 3fe26a31a072923e0bb45a0d9b66931c https://www.encodeproject.org/files/ENCFF829NXG/@@download/ENCFF829NXG.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF605EZB bed narrowPeak peaks ENCSR000EZX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278VAK, ENCFF573AFD, ENCFF998GMZ 4408438 ENCODE Processing Pipeline b063d9eb04e8363aae6bea84354936ef https://www.encodeproject.org/files/ENCFF605EZB/@@download/ENCFF605EZB.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF630SOG bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB194SBI DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF531EIP, ENCFF581ZJL, ENCFF719VRZ 7165816 ENCODE Processing Pipeline 7b6f951b759382536698cda151ec3666 https://www.encodeproject.org/files/ENCFF630SOG/@@download/ENCFF630SOG.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF139EAR bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB194SBI DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF531EIP 6591880 ENCODE Processing Pipeline 9325df784d9bedd79174dcf72faeafdf https://www.encodeproject.org/files/ENCFF139EAR/@@download/ENCFF139EAR.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF648NVD bed narrowPeak peaks ENCSR996ESX ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFRKB-human ENCAB194SBI DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF719VRZ 6216410 ENCODE Processing Pipeline 87ad634f7b226f042012f921a2cbbf20 https://www.encodeproject.org/files/ENCFF648NVD/@@download/ENCFF648NVD.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001VPG bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AME DNA see document see document False 2012-05-14 ENCODE 905466 Michael Snyder, Stanford a5cc3f9197a9d86b96881b76f6d8a663 https://www.encodeproject.org/files/ENCFF001VPG/@@download/ENCFF001VPG.bed.gz hg19 archived moderate library complexity, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF512HLJ bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AME DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF916JGB 4795321 ENCODE Processing Pipeline 3c17b1179cf2f3456c17a2153ee6c4f8 https://www.encodeproject.org/files/ENCFF512HLJ/@@download/ENCFF512HLJ.bed.gz hg19 released moderate library complexity, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF621XGL bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AME DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF002THP, ENCFF498SAC, ENCFF732TLR, ENCFF916JGB 5966323 ENCODE Processing Pipeline bc4a9002169ced6f6306d4a4d82969bd https://www.encodeproject.org/files/ENCFF621XGL/@@download/ENCFF621XGL.bed.gz hg19 released moderate library complexity, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF507ZLI bed narrowPeak peaks ENCSR000EFZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AME DNA see document see document False 2012-05-14 ENCODE 1 ENCFF002THP, ENCFF498SAC, ENCFF732TLR 5173454 ENCODE Processing Pipeline 8f6f2b56cbac1449b28960c1e518cc38 https://www.encodeproject.org/files/ENCFF507ZLI/@@download/ENCFF507ZLI.bed.gz hg19 released moderate library complexity, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF001VMM bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 79217 Sherman Weissman, Yale 1d4d0d158f699f5cf4263fe5ad85e9a9 https://www.encodeproject.org/files/ENCFF001VMM/@@download/ENCFF001VMM.bed.gz hg19 archived mixed read lengths, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read length, control insufficient read depth, insufficient read depth missing control alignments ENCFF711IWR bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF978GBP 2129248 ENCODE Processing Pipeline 6544a6b0ba76e1f622f6e2ca2b5b305d https://www.encodeproject.org/files/ENCFF711IWR/@@download/ENCFF711IWR.bed.gz hg19 released mixed read lengths, mild to moderate bottlenecking biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth missing control alignments ENCFF646NDI bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF994JIB 1968931 ENCODE Processing Pipeline 8fa53b70dea97ab361bb124c40ed951e https://www.encodeproject.org/files/ENCFF646NDI/@@download/ENCFF646NDI.bed.gz hg19 released mixed read lengths, mild to moderate bottlenecking biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth missing control alignments ENCFF076VIZ bed narrowPeak peaks ENCSR000EZT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF978GBP, ENCFF994JIB 4186013 ENCODE Processing Pipeline 26d16f09cf95235c9957076f45ddb7ac https://www.encodeproject.org/files/ENCFF076VIZ/@@download/ENCFF076VIZ.bed.gz hg19 released mixed read lengths, mild to moderate bottlenecking biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth missing control alignments ENCFF001VOW bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 18033 Michael Snyder, Stanford e083514337ac09f22ea264e17f22c278 https://www.encodeproject.org/files/ENCFF001VOW/@@download/ENCFF001VOW.bed.gz hg19 archived mixed read lengths, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF797EKN bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 2 ENCFF113JSN, ENCFF331ARQ 3236176 ENCODE Processing Pipeline 07b93e0a5afac38587f86032ead1a9d2 https://www.encodeproject.org/files/ENCFF797EKN/@@download/ENCFF797EKN.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF947WYS bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF972AUH 1865185 ENCODE Processing Pipeline 448a218d0b8b82117f2a236becd6d1c4 https://www.encodeproject.org/files/ENCFF947WYS/@@download/ENCFF947WYS.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF473ULH bed narrowPeak peaks ENCSR000EHJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF113JSN, ENCFF331ARQ, ENCFF972AUH 4609370 ENCODE Processing Pipeline 59b892a9b152e624fb0865052d1ab77c https://www.encodeproject.org/files/ENCFF473ULH/@@download/ENCFF473ULH.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF697BKG bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human ENCAB962CNL DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL 7101030 ENCODE Processing Pipeline 54492898f66cce12a1e6588aa57d738d https://www.encodeproject.org/files/ENCFF697BKG/@@download/ENCFF697BKG.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF327DRE bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human ENCAB962CNL DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF456BBA, ENCFF581ZJL, ENCFF608THC 7203601 ENCODE Processing Pipeline 6efffd3e2107e1279cf8de7e9722011f https://www.encodeproject.org/files/ENCFF327DRE/@@download/ENCFF327DRE.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF509UMD bed narrowPeak peaks ENCSR851BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEIS2-human ENCAB962CNL DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF608THC 7038268 ENCODE Processing Pipeline 5859ca935cf7cdbc7c84003370d4dc9e https://www.encodeproject.org/files/ENCFF509UMD/@@download/ENCFF509UMD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF931FDJ bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human ENCAB975CWB DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF338GMK, ENCFF705ZEH 5325342 ENCODE Processing Pipeline c253cf61597b4f3bee4329ea3578c28a https://www.encodeproject.org/files/ENCFF931FDJ/@@download/ENCFF931FDJ.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF385SRC bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human ENCAB975CWB DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF477SGV, ENCFF656RDN 5644009 ENCODE Processing Pipeline 48301dfbdebe15de7ac1d5f611e071f6 https://www.encodeproject.org/files/ENCFF385SRC/@@download/ENCFF385SRC.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF516RWD bed narrowPeak peaks ENCSR764OXF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM39-human ENCAB975CWB DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF338GMK, ENCFF477SGV, ENCFF656RDN, ENCFF705ZEH 6821203 ENCODE Processing Pipeline d6112ace681c04450ab3e2090c6ea99e https://www.encodeproject.org/files/ENCFF516RWD/@@download/ENCFF516RWD.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO missing control alignments ENCFF297GYL bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human ENCAB728YTO DNA False 2017-12-01 ENCODE 3 ENCFF628WUH, ENCFF873OEB 6823364 ENCODE Processing Pipeline d1c196a97b70e4895daaaf058bfaea05 https://www.encodeproject.org/files/ENCFF297GYL/@@download/ENCFF297GYL.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF985CUX bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human ENCAB728YTO DNA False 2017-12-01 ENCODE 4 ENCFF652MLY, ENCFF873OEB 6455462 ENCODE Processing Pipeline e11bc058383e8fdea61915a0066f4a1b https://www.encodeproject.org/files/ENCFF985CUX/@@download/ENCFF985CUX.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF890QZH bed narrowPeak peaks ENCSR018MSO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF148-human ENCAB728YTO DNA False 2017-12-01 ENCODE 3, 4 ENCFF628WUH, ENCFF652MLY, ENCFF873OEB 7091141 ENCODE Processing Pipeline f53f3d530da3e83bcd20c25e7c3fd430 https://www.encodeproject.org/files/ENCFF890QZH/@@download/ENCFF890QZH.bed.gz hg19 released missing genetic modification characterization experiment not submitted to GEO ENCFF506NOD bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB961BDT DNA False 2016-07-05 ENCODE 3, 4 ENCFF051LWI, ENCFF550WAC, ENCFF581ZJL, ENCFF928QMZ 7275360 ENCODE Processing Pipeline c178623e46132c76c087e31697e4ed93 https://www.encodeproject.org/files/ENCFF506NOD/@@download/ENCFF506NOD.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF857NTV bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB961BDT DNA False 2016-07-05 ENCODE 3 ENCFF550WAC, ENCFF581ZJL 6990705 ENCODE Processing Pipeline 617eaae881c4775bf7fd5dc6206f45ee https://www.encodeproject.org/files/ENCFF857NTV/@@download/ENCFF857NTV.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF421AHE bed narrowPeak peaks ENCSR343ELW ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB961BDT DNA False 2016-07-05 ENCODE 4 ENCFF051LWI, ENCFF928QMZ 6940783 ENCODE Processing Pipeline d9a685d1a9a7318f8cf381bc3d015eae https://www.encodeproject.org/files/ENCFF421AHE/@@download/ENCFF421AHE.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF908JEV bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF133ZYE, ENCFF754ZXY 6500240 ENCODE Processing Pipeline 70b159f8f15ea265f6041673fefe95e3 https://www.encodeproject.org/files/ENCFF908JEV/@@download/ENCFF908JEV.bed.gz hg19 released missing genetic modification characterization ENCFF040CEH bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF323PVX, ENCFF754ZXY 6561709 ENCODE Processing Pipeline bce420b248bca27e98b833b8038a3721 https://www.encodeproject.org/files/ENCFF040CEH/@@download/ENCFF040CEH.bed.gz hg19 released missing genetic modification characterization ENCFF205LAU bed narrowPeak peaks ENCSR194IJN ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF766-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF133ZYE, ENCFF323PVX, ENCFF754ZXY 7051178 ENCODE Processing Pipeline 6570c5867feab057e5b6b595bcdafa55 https://www.encodeproject.org/files/ENCFF205LAU/@@download/ENCFF205LAU.bed.gz hg19 released missing genetic modification characterization ENCFF009PGQ bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human ENCAB000BEB DNA False 2016-06-14 ENCODE 1 ENCFF193XPY, ENCFF335IPE 5075484 ENCODE Processing Pipeline f52779d780056f5dbc75289ced0e3718 https://www.encodeproject.org/files/ENCFF009PGQ/@@download/ENCFF009PGQ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF107SGI bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human ENCAB000BEB DNA False 2016-06-14 ENCODE 2 ENCFF558LSV, ENCFF879OQC 4674325 ENCODE Processing Pipeline 418758f943c545f62ba0589e070eb71f https://www.encodeproject.org/files/ENCFF107SGI/@@download/ENCFF107SGI.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF341WWD bed narrowPeak peaks ENCSR412CTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUZ12-human ENCAB000BEB DNA False 2016-06-14 ENCODE 1, 2 ENCFF193XPY, ENCFF335IPE, ENCFF558LSV, ENCFF879OQC 6343952 ENCODE Processing Pipeline ab0ae4464d6adbbf3a01041b345c4d12 https://www.encodeproject.org/files/ENCFF341WWD/@@download/ENCFF341WWD.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF839IXS bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF266VDG, ENCFF508ZDE 6931086 ENCODE Processing Pipeline 8fe562fb6aaa19115d0302efb4fe971e https://www.encodeproject.org/files/ENCFF839IXS/@@download/ENCFF839IXS.bed.gz hg19 released missing genetic modification characterization ENCFF603LKQ bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF266VDG, ENCFF473TXL 7251822 ENCODE Processing Pipeline a4ffb0ad4ba13a89b18dbdf27735fbf2 https://www.encodeproject.org/files/ENCFF603LKQ/@@download/ENCFF603LKQ.bed.gz hg19 released missing genetic modification characterization ENCFF234TBD bed narrowPeak peaks ENCSR448UKK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZKSCAN8-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF266VDG, ENCFF473TXL, ENCFF508ZDE 7326429 ENCODE Processing Pipeline fcabb37727935fcfa29107e5fa7be922 https://www.encodeproject.org/files/ENCFF234TBD/@@download/ENCFF234TBD.bed.gz hg19 released missing genetic modification characterization ENCFF075DYV bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF373IJK, ENCFF419SJQ 6482988 ENCODE Processing Pipeline b4263f8188f33604a937ef0883eb06a8 https://www.encodeproject.org/files/ENCFF075DYV/@@download/ENCFF075DYV.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF475TJT bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF373IJK, ENCFF419SJQ, ENCFF810SIO 7099157 ENCODE Processing Pipeline 2fca638f5fd9daa6551ef2d4d8c8309d https://www.encodeproject.org/files/ENCFF475TJT/@@download/ENCFF475TJT.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF869BQK bed narrowPeak peaks ENCSR263DFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PBX2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF419SJQ, ENCFF810SIO 6589214 ENCODE Processing Pipeline b384399b73a3f804a294944539e1d43e https://www.encodeproject.org/files/ENCFF869BQK/@@download/ENCFF869BQK.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF688MMW bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF497VZQ, ENCFF563IAT 5858657 ENCODE Processing Pipeline b9c42852aa5db77e1422ac3c1df2bbec https://www.encodeproject.org/files/ENCFF688MMW/@@download/ENCFF688MMW.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF619AGT bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF497VZQ, ENCFF563IAT, ENCFF653FYP 6927837 ENCODE Processing Pipeline 8bf620519d530be30c82f578f33efa34 https://www.encodeproject.org/files/ENCFF619AGT/@@download/ENCFF619AGT.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF140CQS bed narrowPeak peaks ENCSR552YGL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF563IAT, ENCFF653FYP 6409945 ENCODE Processing Pipeline 371379ba667695673065ea92fcceb6d7 https://www.encodeproject.org/files/ENCFF140CQS/@@download/ENCFF140CQS.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF144QTJ bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human ENCAB594ZFC DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF488SVK, ENCFF641CEP 4860631 ENCODE Processing Pipeline cdbc480c0129042595322c94598b117f https://www.encodeproject.org/files/ENCFF144QTJ/@@download/ENCFF144QTJ.bed.gz hg19 released borderline replicate concordance, low read length experiment not submitted to GEO insufficient read depth ENCFF934BOE bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human ENCAB594ZFC DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF187TCP, ENCFF488SVK, ENCFF493QSH, ENCFF641CEP 6222350 ENCODE Processing Pipeline 8e85385996eace4de7fa9f0596787b83 https://www.encodeproject.org/files/ENCFF934BOE/@@download/ENCFF934BOE.bed.gz hg19 released borderline replicate concordance, low read length experiment not submitted to GEO insufficient read depth ENCFF686LNT bed narrowPeak peaks ENCSR899GSH ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM34-human ENCAB594ZFC DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF187TCP, ENCFF493QSH 4512649 ENCODE Processing Pipeline fa9e187e5f39fb2784f5a5bc36f31368 https://www.encodeproject.org/files/ENCFF686LNT/@@download/ENCFF686LNT.bed.gz hg19 released borderline replicate concordance, low read length experiment not submitted to GEO insufficient read depth ENCFF735EGA bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human ENCAB324ARN DNA False 2017-01-27 ENCODE 1 ENCFF160VXC, ENCFF965SIW 6692518 ENCODE Processing Pipeline 6a302f9366a47443547a372527ca43ee https://www.encodeproject.org/files/ENCFF735EGA/@@download/ENCFF735EGA.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF497RBU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human ENCAB324ARN DNA False 2017-01-27 ENCODE 2 ENCFF254NNQ, ENCFF834TUP 7172441 ENCODE Processing Pipeline 85544aad8c0d6fb0f2a0e380f554bd76 https://www.encodeproject.org/files/ENCFF497RBU/@@download/ENCFF497RBU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF406JPU bed narrowPeak peaks ENCSR742IDN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C1-human ENCAB324ARN DNA False 2017-01-27 ENCODE 1, 2 ENCFF160VXC, ENCFF254NNQ, ENCFF834TUP, ENCFF965SIW 7259842 ENCODE Processing Pipeline a4bc031f28c53690a1aadf54849668d3 https://www.encodeproject.org/files/ENCFF406JPU/@@download/ENCFF406JPU.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF032HCI bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000AUF DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF899VCS 5573738 ENCODE Processing Pipeline d76d00eebebc49f8761c93cad455787a https://www.encodeproject.org/files/ENCFF032HCI/@@download/ENCFF032HCI.bed.gz hg19 released low read depth ENCFF139HGF bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000AUF DNA see document see document False 2014-07-07 ENCODE 2 ENCFF065DOQ, ENCFF092ACZ 5524228 ENCODE Processing Pipeline 2aae8c1ccd397c34a1d4ed546f80f4b6 https://www.encodeproject.org/files/ENCFF139HGF/@@download/ENCFF139HGF.bed.gz hg19 released low read depth ENCFF027BJC bed narrowPeak peaks ENCSR353HEP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000AUF DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF065DOQ, ENCFF092ACZ, ENCFF899VCS 6662908 ENCODE Processing Pipeline 8c224e9c536f38f96f36cb2caa2b4f25 https://www.encodeproject.org/files/ENCFF027BJC/@@download/ENCFF027BJC.bed.gz hg19 released low read depth ENCFF241QBV bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF775ZRK, ENCFF891YJS 6254539 ENCODE Processing Pipeline c7fb7fb7e8669a0f4968aeb0331a514c https://www.encodeproject.org/files/ENCFF241QBV/@@download/ENCFF241QBV.bed.gz hg19 released missing genetic modification characterization ENCFF074NKQ bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF702YSS, ENCFF891YJS 6763727 ENCODE Processing Pipeline 4fcc50d833fbd8658c629457a34785d8 https://www.encodeproject.org/files/ENCFF074NKQ/@@download/ENCFF074NKQ.bed.gz hg19 released missing genetic modification characterization ENCFF769RKU bed narrowPeak peaks ENCSR975SSR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ELF1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF702YSS, ENCFF775ZRK, ENCFF891YJS 7077032 ENCODE Processing Pipeline 67c5bc0bfa084f885cf4b8f972beb88e https://www.encodeproject.org/files/ENCFF769RKU/@@download/ENCFF769RKU.bed.gz hg19 released missing genetic modification characterization ENCFF001VMW bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human ENCAB000AFJ DNA see document see document False 2012-05-14 ENCODE 983518 Michael Snyder, Stanford 46643afa087886801b6ca67ad4b89878 https://www.encodeproject.org/files/ENCFF001VMW/@@download/ENCFF001VMW.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF477PXF bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human ENCAB000AFJ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF072HKU, ENCFF074CIT, ENCFF710NTS 2763528 ENCODE Processing Pipeline 3998d6006256ccd165ab9adacd19d4d3 https://www.encodeproject.org/files/ENCFF477PXF/@@download/ENCFF477PXF.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF620JKI bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human ENCAB000AFJ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF074CIT, ENCFF710NTS 5345789 ENCODE Processing Pipeline cc2c46c0e7f74d7af9a17d5c30f9b684 https://www.encodeproject.org/files/ENCFF620JKI/@@download/ENCFF620JKI.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF959MXK bed narrowPeak peaks ENCSR000EGC ChIP-seq EFO:0002067 K562 cell line Homo sapiens RCOR1-human ENCAB000AFJ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF072HKU, ENCFF710NTS 5051372 ENCODE Processing Pipeline 0ad30b28ec7b893683aa702b3ec92aab https://www.encodeproject.org/files/ENCFF959MXK/@@download/ENCFF959MXK.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF165OLG bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB590IRI DNA False 2016-10-11 ENCODE 1 ENCFF561GSY, ENCFF581ZJL 7194804 ENCODE Processing Pipeline 3ee7173d67a0ae3c64c577669ba2e544 https://www.encodeproject.org/files/ENCFF165OLG/@@download/ENCFF165OLG.bed.gz hg19 released ENCFF320JKZ bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB590IRI DNA False 2016-10-11 ENCODE 2 ENCFF051LWI, ENCFF777WTJ 7163528 ENCODE Processing Pipeline abde4ca054c2bc93c58be11b81372073 https://www.encodeproject.org/files/ENCFF320JKZ/@@download/ENCFF320JKZ.bed.gz hg19 released ENCFF519QZC bed narrowPeak peaks ENCSR948VFL ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB590IRI DNA False 2016-10-11 ENCODE 1, 2 ENCFF051LWI, ENCFF561GSY, ENCFF581ZJL, ENCFF777WTJ 7143401 ENCODE Processing Pipeline b28be6209e576830c06ae1bea8a3ed77 https://www.encodeproject.org/files/ENCFF519QZC/@@download/ENCFF519QZC.bed.gz hg19 released ENCFF051PEB bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human ENCAB451DRR DNA False 2017-06-29 ENCODE 1 ENCFF581ZJL, ENCFF588VIM 6977902 ENCODE Processing Pipeline 46cb8d9c3077842332aab8b6a0696bd2 https://www.encodeproject.org/files/ENCFF051PEB/@@download/ENCFF051PEB.bed.gz hg19 released mild to moderate bottlenecking ENCFF299WDT bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human ENCAB451DRR DNA False 2017-06-29 ENCODE 2 ENCFF581ZJL, ENCFF787QAB 7053427 ENCODE Processing Pipeline f2d0976e6d84a7e40f3e8275aa373a62 https://www.encodeproject.org/files/ENCFF299WDT/@@download/ENCFF299WDT.bed.gz hg19 released mild to moderate bottlenecking ENCFF759MGA bed narrowPeak peaks ENCSR343IFJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CC2D1A-human ENCAB451DRR DNA False 2017-06-29 ENCODE 1, 2 ENCFF581ZJL, ENCFF588VIM, ENCFF787QAB 7277439 ENCODE Processing Pipeline 3c067f04d3a2c030d65e7af2da6a4c92 https://www.encodeproject.org/files/ENCFF759MGA/@@download/ENCFF759MGA.bed.gz hg19 released mild to moderate bottlenecking ENCFF246CBF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5734520 ENCODE Processing Pipeline 86b483a18a63ce2a53d4da7d522dfe3b https://www.encodeproject.org/files/ENCFF246CBF/@@download/ENCFF246CBF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF401PPU bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 6912773 ENCODE Processing Pipeline df092442203bf240ff9ab33f7e8489ea https://www.encodeproject.org/files/ENCFF401PPU/@@download/ENCFF401PPU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF083XOF bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6014706 ENCODE Processing Pipeline ff0df313b2f61b66df6a8b77f1d620a0 https://www.encodeproject.org/files/ENCFF083XOF/@@download/ENCFF083XOF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF436PYK bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF095UEF 6191704 ENCODE Processing Pipeline dfd4ddecf20c1deb9cf5c955f1208c50 https://www.encodeproject.org/files/ENCFF436PYK/@@download/ENCFF436PYK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF826RWZ bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF095UEF, ENCFF481RQA, ENCFF581ZJL 6976755 ENCODE Processing Pipeline 119c463f64589438cdd39745a0d57bc8 https://www.encodeproject.org/files/ENCFF826RWZ/@@download/ENCFF826RWZ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF766PWX bed narrowPeak peaks ENCSR414TYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BDQ DNA False 2014-07-07 ENCODE 1 ENCFF481RQA, ENCFF581ZJL 5925779 ENCODE Processing Pipeline 4ab6a0de3a57b3c8f5aed0957747ab0a https://www.encodeproject.org/files/ENCFF766PWX/@@download/ENCFF766PWX.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001ULN bed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human ENCAB000ALM DNA see document see document False 2011-07-18 ENCODE 1 1 276976 Richard Myers, HAIB 63cbe5fe1a6dabd98368a3512aa3f4fb https://www.encodeproject.org/files/ENCFF001ULN/@@download/ENCFF001ULN.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001ULO bed broadPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human ENCAB000ALM DNA see document see document False 2011-07-18 ENCODE 2 1 224103 Richard Myers, HAIB 692f61773cbbb5d48feb06decb5de2af https://www.encodeproject.org/files/ENCFF001ULO/@@download/ENCFF001ULO.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF713KSL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human ENCAB000ALM DNA see document see document False 2011-07-18 ENCODE 1 ENCFF278YTL, ENCFF750MIM 2290084 ENCODE Processing Pipeline af1c4a7aa3b4d0dfc348d3685a0b7c8b https://www.encodeproject.org/files/ENCFF713KSL/@@download/ENCFF713KSL.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF847XRL bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human ENCAB000ALM DNA see document see document False 2011-07-18 ENCODE 2 ENCFF077WPD, ENCFF750MIM 2486166 ENCODE Processing Pipeline 33a6656245faca919822bdb778bb5af9 https://www.encodeproject.org/files/ENCFF847XRL/@@download/ENCFF847XRL.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF697OMD bed narrowPeak peaks ENCSR000BKS ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF1-human ENCAB000ALM DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF077WPD, ENCFF278YTL, ENCFF750MIM 4578291 ENCODE Processing Pipeline b347556ef4467cbca18d807a75977bea https://www.encodeproject.org/files/ENCFF697OMD/@@download/ENCFF697OMD.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, insufficient read depth, severe bottlenecking extremely low read depth, missing control alignments ENCFF001VNB bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human ENCAB000AGB DNA see document see document False 2012-08-20 ENCODE 359741 Michael Snyder, Stanford 13deddbf404a44f36b3ff0779b88f209 https://www.encodeproject.org/files/ENCFF001VNB/@@download/ENCFF001VNB.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review, missing derived_from ENCFF390VNW bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human ENCAB000AGB DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF265GRP, ENCFF526XKG, ENCFF710NTS 5448041 ENCODE Processing Pipeline bf008e4c9b2739fea71918698f2b93dc https://www.encodeproject.org/files/ENCFF390VNW/@@download/ENCFF390VNW.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF670YGF bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human ENCAB000AGB DNA see document see document False 2012-08-20 ENCODE 1 ENCFF526XKG, ENCFF710NTS 4642099 ENCODE Processing Pipeline 24a9177cb658f07a69141642ad4c3cf1 https://www.encodeproject.org/files/ENCFF670YGF/@@download/ENCFF670YGF.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF324CAS bed narrowPeak peaks ENCSR000EFU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELK1-human ENCAB000AGB DNA see document see document False 2012-08-20 ENCODE 2 ENCFF265GRP, ENCFF710NTS 4508322 ENCODE Processing Pipeline ddf087dc114613cea7315d513568c461 https://www.encodeproject.org/files/ENCFF324CAS/@@download/ENCFF324CAS.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF207HZD bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human ENCAB728YTO DNA False 2016-02-16 ENCODE 2 ENCFF234PKC, ENCFF985LZI 5649743 ENCODE Processing Pipeline 0555764c4566ad7d32c7afc448d29081 https://www.encodeproject.org/files/ENCFF207HZD/@@download/ENCFF207HZD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF237JZC bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1 ENCFF676IGA, ENCFF985LZI 6000653 ENCODE Processing Pipeline f7838b40ca9c0c92219e84adafab3aea https://www.encodeproject.org/files/ENCFF237JZC/@@download/ENCFF237JZC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF847LIB bed narrowPeak peaks ENCSR648INT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ILK-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1, 2 ENCFF234PKC, ENCFF676IGA, ENCFF985LZI 6916136 ENCODE Processing Pipeline d052289690e58a3e229ff0818d4dd73f https://www.encodeproject.org/files/ENCFF847LIB/@@download/ENCFF847LIB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF001UJX bed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human ENCAB000AGJ DNA see document see document False 2011-07-18 ENCODE 1 1 142787 Richard Myers, HAIB 50ce1e7b3fd0ea77c64d6b39ab4a5436 https://www.encodeproject.org/files/ENCFF001UJX/@@download/ENCFF001UJX.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJY bed broadPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human ENCAB000AGJ DNA see document see document False 2011-07-18 ENCODE 2 1 108358 Richard Myers, HAIB 3cdcf7db6de37033de07a16ab10b5f3b https://www.encodeproject.org/files/ENCFF001UJY/@@download/ENCFF001UJY.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF753OLX bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human ENCAB000AGJ DNA see document see document False 2011-07-18 ENCODE 2 ENCFF670JGI, ENCFF750MIM 504591 ENCODE Processing Pipeline 7f0fd0a4ec1a19ce2d1dd6be0e5887e2 https://www.encodeproject.org/files/ENCFF753OLX/@@download/ENCFF753OLX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF400JWL bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human ENCAB000AGJ DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF846HET 3916390 ENCODE Processing Pipeline 486a998417a0cec22b14892410863eb3 https://www.encodeproject.org/files/ENCFF400JWL/@@download/ENCFF400JWL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF818IMH bed narrowPeak peaks ENCSR000BMV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOSL1-human ENCAB000AGJ DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF670JGI, ENCFF750MIM, ENCFF846HET 4507280 ENCODE Processing Pipeline eaf45114be5e96aab788f4150ea060e7 https://www.encodeproject.org/files/ENCFF818IMH/@@download/ENCFF818IMH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF065CJT bed narrowPeak peaks ENCSR557PSD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF038IFQ, ENCFF316EBF 6100175 ENCODE Processing Pipeline b4ee13ebc7fd498c886ea2f21200813b https://www.encodeproject.org/files/ENCFF065CJT/@@download/ENCFF065CJT.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity poor library complexity, severe bottlenecking ENCFF192SZH bed narrowPeak peaks ENCSR557PSD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF290OJO, ENCFF316EBF 6150761 ENCODE Processing Pipeline 583b7b4b54bd4d096a3c63fddfed45b4 https://www.encodeproject.org/files/ENCFF192SZH/@@download/ENCFF192SZH.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity poor library complexity, severe bottlenecking ENCFF290CCX bed narrowPeak peaks ENCSR557PSD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF038IFQ, ENCFF290OJO, ENCFF316EBF 6939527 ENCODE Processing Pipeline f0036795be13a0a2a5b78bcf4abd1f9b https://www.encodeproject.org/files/ENCFF290CCX/@@download/ENCFF290CCX.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity poor library complexity, severe bottlenecking ENCFF325TSC bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human ENCAB626AJI DNA SDS formaldehyde False 2018-01-19 ENCODE 2 ENCFF641CEP, ENCFF709QNC 2240256 ENCODE Processing Pipeline d9b247dda84ccbccfbe1aa818d4405da https://www.encodeproject.org/files/ENCFF325TSC/@@download/ENCFF325TSC.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF212ABS bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human ENCAB626AJI DNA SDS formaldehyde False 2018-01-19 ENCODE 1 ENCFF402MOS, ENCFF493QSH 2984149 ENCODE Processing Pipeline 274b166d82e9466f2143e4a7394ec866 https://www.encodeproject.org/files/ENCFF212ABS/@@download/ENCFF212ABS.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF764ZHV bed narrowPeak peaks ENCSR850WUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM15-human ENCAB626AJI DNA SDS formaldehyde False 2018-01-19 ENCODE 1, 2 ENCFF402MOS, ENCFF493QSH, ENCFF641CEP, ENCFF709QNC 5850514 ENCODE Processing Pipeline cd81ce772bf7fdff2d23842c461ffed2 https://www.encodeproject.org/files/ENCFF764ZHV/@@download/ENCFF764ZHV.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth ENCFF001VPC bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human ENCAB000ALR DNA see document see document False 2011-10-29 ENCODE 733885 Michael Snyder, Stanford 5f961cf9a4a338ac77890f2cbbd41b1c https://www.encodeproject.org/files/ENCFF001VPC/@@download/ENCFF001VPC.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF523ODF bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human ENCAB000ALR DNA see document see document False 2011-10-29 ENCODE 2 ENCFF177SSB, ENCFF498SAC 4519827 ENCODE Processing Pipeline 2e3e2f6ed744da703d91e8e1370c9b74 https://www.encodeproject.org/files/ENCFF523ODF/@@download/ENCFF523ODF.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF545FAT bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human ENCAB000ALR DNA see document see document False 2011-10-29 ENCODE 1 ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 5201909 ENCODE Processing Pipeline f778df33398231bdd16946eadc00a734 https://www.encodeproject.org/files/ENCFF545FAT/@@download/ENCFF545FAT.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF891AHH bed narrowPeak peaks ENCSR000EHA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBP-human ENCAB000ALR DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF177SSB, ENCFF495MQP, ENCFF498SAC, ENCFF732TLR 5554902 ENCODE Processing Pipeline e995fb323a6b9e2470b30af5fb926b01 https://www.encodeproject.org/files/ENCFF891AHH/@@download/ENCFF891AHH.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF045SMN bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human ENCAB000AAT DNA see document see document False 2014-07-07 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF131HAH 6212068 ENCODE Processing Pipeline 4d303f0bcffe18274deecf13520dfd59 https://www.encodeproject.org/files/ENCFF045SMN/@@download/ENCFF045SMN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF357OAA bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human ENCAB000AAT DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ 5760292 ENCODE Processing Pipeline 57cd23fbb6807ef1926017cdddb8efac https://www.encodeproject.org/files/ENCFF357OAA/@@download/ENCFF357OAA.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF477IXW bed narrowPeak peaks ENCSR077DKV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CREM-human ENCAB000AAT DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF115VTJ, ENCFF131HAH 6680945 ENCODE Processing Pipeline f5b14472ec98f963c35d668b3636b252 https://www.encodeproject.org/files/ENCFF477IXW/@@download/ENCFF477IXW.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF839WLX bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB425IPH DNA False 2016-10-31 ENCODE 1 ENCFF581ZJL, ENCFF607LWB 7182624 ENCODE Processing Pipeline 7cdf0e768ab4a89b9f8bb35087b49d87 https://www.encodeproject.org/files/ENCFF839WLX/@@download/ENCFF839WLX.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF622WDZ bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB425IPH DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF473GDU 7079040 ENCODE Processing Pipeline 817b2387e09c000d8bee229f9933df2a https://www.encodeproject.org/files/ENCFF622WDZ/@@download/ENCFF622WDZ.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF701XIM bed narrowPeak peaks ENCSR643VTW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB425IPH DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF473GDU, ENCFF581ZJL, ENCFF607LWB 7237550 ENCODE Processing Pipeline fba6edeb7e7d91994bddf1b275cf4b58 https://www.encodeproject.org/files/ENCFF701XIM/@@download/ENCFF701XIM.bed.gz hg19 released borderline replicate concordance, antibody characterized with exemption missing control alignments ENCFF804ZDO bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human ENCAB208FGX DNA False 2016-12-05 ENCODE 1 ENCFF474PWT, ENCFF581ZJL 6601859 ENCODE Processing Pipeline 422447557aaa8aeac1f203d11e682a59 https://www.encodeproject.org/files/ENCFF804ZDO/@@download/ENCFF804ZDO.bed.gz hg19 released ENCFF666TVL bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human ENCAB208FGX DNA False 2016-12-05 ENCODE 2 ENCFF051LWI, ENCFF452QYJ 6573285 ENCODE Processing Pipeline da592a6f1324752fe87aee24fb491ba2 https://www.encodeproject.org/files/ENCFF666TVL/@@download/ENCFF666TVL.bed.gz hg19 released ENCFF297LLA bed narrowPeak peaks ENCSR085DDI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFXL1-human ENCAB208FGX DNA False 2016-12-05 ENCODE 1, 2 ENCFF051LWI, ENCFF452QYJ, ENCFF474PWT, ENCFF581ZJL 7182008 ENCODE Processing Pipeline 3c276986e7119a604cfce800230a06fb https://www.encodeproject.org/files/ENCFF297LLA/@@download/ENCFF297LLA.bed.gz hg19 released ENCFF373FDW bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human ENCAB822KLV DNA False 2016-09-12 ENCODE 1, 2 ENCFF354IGM, ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 6696113 ENCODE Processing Pipeline 255615d0001ae16e53d98f85676ca8cc https://www.encodeproject.org/files/ENCFF373FDW/@@download/ENCFF373FDW.bed.gz hg19 released antibody characterized with exemption ENCFF077SAE bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human ENCAB822KLV DNA False 2016-09-12 ENCODE 2 ENCFF356PMF, ENCFF444TNY, ENCFF847YDJ 6051932 ENCODE Processing Pipeline dede322ac318214dd1b720b562e528c6 https://www.encodeproject.org/files/ENCFF077SAE/@@download/ENCFF077SAE.bed.gz hg19 released antibody characterized with exemption ENCFF939WYL bed narrowPeak peaks ENCSR760UVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens KLF16-human ENCAB822KLV DNA False 2016-09-12 ENCODE 1 ENCFF354IGM, ENCFF444TNY, ENCFF847YDJ 6086390 ENCODE Processing Pipeline d487c96986116ccb87b786d9ddfd69c7 https://www.encodeproject.org/files/ENCFF939WYL/@@download/ENCFF939WYL.bed.gz hg19 released antibody characterized with exemption ENCFF697XWY bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human ENCAB862MHS DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF834TUP, ENCFF970LPR 7113255 ENCODE Processing Pipeline e189fec681cec63f4395946a62ac2d35 https://www.encodeproject.org/files/ENCFF697XWY/@@download/ENCFF697XWY.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF238CDA bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human ENCAB862MHS DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF489ACL, ENCFF834TUP, ENCFF970LPR 7227527 ENCODE Processing Pipeline b14d68921c194c28ad60d9d651545ea6 https://www.encodeproject.org/files/ENCFF238CDA/@@download/ENCFF238CDA.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF656UAV bed narrowPeak peaks ENCSR100UQX ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF9B-human ENCAB862MHS DNA False 2018-01-26 ENCODE 2 ENCFF489ACL, ENCFF834TUP 6972023 ENCODE Processing Pipeline f3f1963e6d236b562fc35d5b12e9b8cc https://www.encodeproject.org/files/ENCFF656UAV/@@download/ENCFF656UAV.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001VOH bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 112755 Michael Snyder, Stanford e878710ad764502ef990eeff2524a04a https://www.encodeproject.org/files/ENCFF001VOH/@@download/ENCFF001VOH.bed.gz hg19 archived inconsistent target of control experiment biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF311JHD bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF371LNT, ENCFF732TLR 5548569 ENCODE Processing Pipeline d5c14559ee0dae972ab69cce08e29c20 https://www.encodeproject.org/files/ENCFF311JHD/@@download/ENCFF311JHD.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF548UHR bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF318TVO, ENCFF371LNT, ENCFF498SAC, ENCFF732TLR 6615743 ENCODE Processing Pipeline 312d75470686acbed2573f95ac1a663b https://www.encodeproject.org/files/ENCFF548UHR/@@download/ENCFF548UHR.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF538LJI bed narrowPeak peaks ENCSR000EHL ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF318TVO, ENCFF498SAC 5450249 ENCODE Processing Pipeline 644f9f0d26d1a0e6f7b8a2e09282df2b https://www.encodeproject.org/files/ENCFF538LJI/@@download/ENCFF538LJI.bed.gz hg19 released inconsistent target of control experiment biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001VND bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGV DNA see document see document False 2012-08-20 ENCODE 173891 Michael Snyder, Stanford 6a07da1b0c8bc539abe32ca5078768e6 https://www.encodeproject.org/files/ENCFF001VND/@@download/ENCFF001VND.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, inconsistent target of control experiment biological replicates with identical biosample, missing derived_from ENCFF253DCO bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGV DNA see document see document False 2012-08-20 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF942NUX 4597558 ENCODE Processing Pipeline 83ffe6ced3b82d7ee59333110e1fea74 https://www.encodeproject.org/files/ENCFF253DCO/@@download/ENCFF253DCO.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF234GQW bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGV DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF498SAC, ENCFF573VVJ, ENCFF732TLR, ENCFF942NUX 5191930 ENCODE Processing Pipeline 749e2381ff9f6dd286141019b1b16ebb https://www.encodeproject.org/files/ENCFF234GQW/@@download/ENCFF234GQW.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF916MQB bed narrowPeak peaks ENCSR000EFT ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGV DNA see document see document False 2012-08-20 ENCODE 2 ENCFF498SAC, ENCFF573VVJ 4069521 ENCODE Processing Pipeline 8b4ab6409aa75db4f808f00cfeb1980f https://www.encodeproject.org/files/ENCFF916MQB/@@download/ENCFF916MQB.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, inconsistent target of control experiment biological replicates with identical biosample ENCFF791LFD bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human ENCAB392AZR DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF572OMD, ENCFF958KLM 6185676 ENCODE Processing Pipeline fb1c60fc8fddc0244414dfb53e2e77ef https://www.encodeproject.org/files/ENCFF791LFD/@@download/ENCFF791LFD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, low read length, moderate library complexity experiment not submitted to GEO ENCFF663NYD bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human ENCAB392AZR DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF720NRD, ENCFF958KLM 6769768 ENCODE Processing Pipeline e536533c39ff3d873d8e3ded031f057d https://www.encodeproject.org/files/ENCFF663NYD/@@download/ENCFF663NYD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, low read length, moderate library complexity experiment not submitted to GEO ENCFF102MCA bed narrowPeak peaks ENCSR283ZRI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2G-human ENCAB392AZR DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF508DBG, ENCFF720NRD 6204011 ENCODE Processing Pipeline c40bd1cdd9037b825572839798363719 https://www.encodeproject.org/files/ENCFF102MCA/@@download/ENCFF102MCA.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, low read length, moderate library complexity experiment not submitted to GEO ENCFF649PUW bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human ENCAB260LTI DNA False 2017-05-17 ENCODE 1 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV 6116974 ENCODE Processing Pipeline 547bd70b8c068f6f139acc80b31b39da https://www.encodeproject.org/files/ENCFF649PUW/@@download/ENCFF649PUW.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF511NCS bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human ENCAB260LTI DNA False 2017-05-17 ENCODE 1, 2 ENCFF158RWF, ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 6775439 ENCODE Processing Pipeline b26eb16256e9113023802d6813e2adf1 https://www.encodeproject.org/files/ENCFF511NCS/@@download/ENCFF511NCS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF384FEX bed narrowPeak peaks ENCSR171CAY ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F7-human ENCAB260LTI DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF851YDT 5954915 ENCODE Processing Pipeline cd518e0e1b3e7bf35d91cf484ccb44f1 https://www.encodeproject.org/files/ENCFF384FEX/@@download/ENCFF384FEX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001VNT bed narrowPeak peaks ENCSR000FAE ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-10-29 ENCODE 45577 Sherman Weissman, Yale a19aaf8abd95dbbb946feef40beb6e21 https://www.encodeproject.org/files/ENCFF001VNT/@@download/ENCFF001VNT.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VPJ bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-10-29 ENCODE 76019 Peggy Farnham, USC ef2a46485852ced4e03750fda5db807e https://www.encodeproject.org/files/ENCFF001VPJ/@@download/ENCFF001VPJ.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF211PND bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF566NKP 3133805 ENCODE Processing Pipeline 7b3c014da2fb8c5e41950d2bd25f182f https://www.encodeproject.org/files/ENCFF211PND/@@download/ENCFF211PND.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF899XEM bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF193QAR 1723059 ENCODE Processing Pipeline 682a1f74ecb0c3f653a3f0f457a3fdb1 https://www.encodeproject.org/files/ENCFF899XEM/@@download/ENCFF899XEM.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF228AYO bed narrowPeak peaks ENCSR000EWF ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANS DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF193QAR, ENCFF566NKP 4710456 ENCODE Processing Pipeline c5548561077713c5247041e54aeb05b0 https://www.encodeproject.org/files/ENCFF228AYO/@@download/ENCFF228AYO.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF011UZZ bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB511RTZ DNA False 2016-04-21 ENCODE 1 ENCFF367QVT, ENCFF581ZJL 6897052 ENCODE Processing Pipeline 75f43cabef1cec46da521df4ee68fd85 https://www.encodeproject.org/files/ENCFF011UZZ/@@download/ENCFF011UZZ.bed.gz hg19 released mild to moderate bottlenecking ENCFF071HZE bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB511RTZ DNA False 2016-04-21 ENCODE 1, 2 ENCFF051LWI, ENCFF367QVT, ENCFF518IYV, ENCFF581ZJL 7246665 ENCODE Processing Pipeline 8d61e3167b86dd42914539aae5dd80fe https://www.encodeproject.org/files/ENCFF071HZE/@@download/ENCFF071HZE.bed.gz hg19 released mild to moderate bottlenecking ENCFF652WXC bed narrowPeak peaks ENCSR155KHM ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB511RTZ DNA False 2016-04-21 ENCODE 2 ENCFF051LWI, ENCFF518IYV 6775311 ENCODE Processing Pipeline 255864953a6693c48e10c5c5811564d7 https://www.encodeproject.org/files/ENCFF652WXC/@@download/ENCFF652WXC.bed.gz hg19 released mild to moderate bottlenecking ENCFF001SZT bed broadPeak peaks ENCSR000ATY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB000AIY, ENCAB805KAO DNA see document see document False 2012-08-06 ENCODE 178678 Bradley Bernstein, Broad 65da1e9239562b7723b8a6c02897bbba https://www.encodeproject.org/files/ENCFF001SZT/@@download/ENCFF001SZT.bed.gz hg19 released inconsistent platforms, low read length missing raw data in replicate, missing derived_from ENCFF001VOP bed narrowPeak peaks ENCSR000EWD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SETDB1-human ENCAB000AKP DNA see document see document False 2012-05-14 ENCODE 29015 Peggy Farnham, USC 74ed6582b9df786ac592b77a0b22cf1d https://www.encodeproject.org/files/ENCFF001VOP/@@download/ENCFF001VOP.bed.gz hg19 archived low read depth, mild to moderate bottlenecking biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF001VPD bed narrowPeak peaks ENCSR000DOD ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF3C2-human ENCAB000ALX DNA see document see document False 2011-10-29 ENCODE 34579 Kevin Struhl, HMS 0255769bf5158424ac1aa0f59759db60 https://www.encodeproject.org/files/ENCFF001VPD/@@download/ENCFF001VPD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VPI bed narrowPeak peaks ENCSR000FAC ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC4-human ENCAB000AMK DNA see document see document False 2011-10-29 ENCODE 536 Sherman Weissman, Yale 53b582d7e33cebdad006cc70b1648caf https://www.encodeproject.org/files/ENCFF001VPI/@@download/ENCFF001VPI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VOY bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 16103 Sherman Weissman, Yale d1811f74462e9d25becbae05f7872427 https://www.encodeproject.org/files/ENCFF001VOY/@@download/ENCFF001VOY.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF599VMK bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 1 ENCFF969WVY, ENCFF998GMZ 1345941 ENCODE Processing Pipeline ad7df233444d5a1f7d90a06cba4f1494 https://www.encodeproject.org/files/ENCFF599VMK/@@download/ENCFF599VMK.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF127UZX bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 2 ENCFF900YNG, ENCFF998GMZ 2639252 ENCODE Processing Pipeline 5a179ea069533493ab67c3846b2f16e4 https://www.encodeproject.org/files/ENCFF127UZX/@@download/ENCFF127UZX.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF697GQV bed narrowPeak peaks ENCSR000FBC ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF900YNG, ENCFF969WVY, ENCFF998GMZ 4173794 ENCODE Processing Pipeline 8b7cd1bc822ff1bba4f5025aed089f8f https://www.encodeproject.org/files/ENCFF697GQV/@@download/ENCFF697GQV.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF001VOL bed narrowPeak peaks ENCSR000EHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3G-human ENCAB000AKB DNA see document see document False 2011-10-29 ENCODE 2127 Michael Snyder, Stanford 9123418a8d342a40a1f9614cbfca0806 https://www.encodeproject.org/files/ENCFF001VOL/@@download/ENCFF001VOL.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VLY bed narrowPeak peaks ENCSR000DOG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-10-29 ENCODE 15999 Kevin Struhl, HMS bb4b58423b77a01e4bde05290e5f507b https://www.encodeproject.org/files/ENCFF001VLY/@@download/ENCFF001VLY.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF027UPQ bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB012FUX DNA False 2017-02-02 ENCODE 1 ENCFF581ZJL, ENCFF623FBO 6005463 ENCODE Processing Pipeline 1353812070a8ae4076074665d90ec565 https://www.encodeproject.org/files/ENCFF027UPQ/@@download/ENCFF027UPQ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF662CIT bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB012FUX DNA False 2017-02-02 ENCODE 2 ENCFF051LWI, ENCFF687OFO 5665796 ENCODE Processing Pipeline 734bfef27a0bf430b9620e9a05ddb2b0 https://www.encodeproject.org/files/ENCFF662CIT/@@download/ENCFF662CIT.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF202AHW bed narrowPeak peaks ENCSR492LTS ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB012FUX DNA False 2017-02-02 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF623FBO, ENCFF687OFO 6939829 ENCODE Processing Pipeline f60bc81957085889e127495f12db228a https://www.encodeproject.org/files/ENCFF202AHW/@@download/ENCFF202AHW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF877UDE bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF084TWW, ENCFF449ZQF 7097868 ENCODE Processing Pipeline 1f01fb0e9e35b80561efe31a723b097c https://www.encodeproject.org/files/ENCFF877UDE/@@download/ENCFF877UDE.bed.gz hg19 released missing genetic modification characterization ENCFF912QBK bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF449ZQF, ENCFF541WBX 6980795 ENCODE Processing Pipeline ec15f630d11debe6ea971d6126e6d6a1 https://www.encodeproject.org/files/ENCFF912QBK/@@download/ENCFF912QBK.bed.gz hg19 released missing genetic modification characterization ENCFF907RDS bed narrowPeak peaks ENCSR239ZLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOSL1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF084TWW, ENCFF449ZQF, ENCFF541WBX 7145428 ENCODE Processing Pipeline 0de3b8264eb4bebc43b82ec2422a9bc3 https://www.encodeproject.org/files/ENCFF907RDS/@@download/ENCFF907RDS.bed.gz hg19 released missing genetic modification characterization ENCFF985UBC bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human ENCAB303CHK DNA SDS formaldehyde False 2018-01-26 ENCODE 1 ENCFF431ABA, ENCFF493QSH 5134983 ENCODE Processing Pipeline f1e0151dfd8b40fec2933c296e70c153 https://www.encodeproject.org/files/ENCFF985UBC/@@download/ENCFF985UBC.bed.gz hg19 released borderline replicate concordance, low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF994WPN bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human ENCAB303CHK DNA SDS formaldehyde False 2018-01-26 ENCODE 2 ENCFF641CEP, ENCFF836GWP 5649219 ENCODE Processing Pipeline dd83f69db7a21a6d64dcf79127463941 https://www.encodeproject.org/files/ENCFF994WPN/@@download/ENCFF994WPN.bed.gz hg19 released borderline replicate concordance, low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF462AIJ bed narrowPeak peaks ENCSR724GSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB2-human ENCAB303CHK DNA SDS formaldehyde False 2018-01-26 ENCODE 1, 2 ENCFF431ABA, ENCFF493QSH, ENCFF641CEP, ENCFF836GWP 6719439 ENCODE Processing Pipeline 634223dff2b5675f4d36b99a6a81cf23 https://www.encodeproject.org/files/ENCFF462AIJ/@@download/ENCFF462AIJ.bed.gz hg19 released borderline replicate concordance, low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF755JDJ bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB788TCB DNA False 2018-01-26 ENCODE 1 ENCFF382EGR, ENCFF581ZJL 6642143 ENCODE Processing Pipeline cac3983772b5e92e19a70e7c9c65c348 https://www.encodeproject.org/files/ENCFF755JDJ/@@download/ENCFF755JDJ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF765UQI bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB788TCB DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF572AJL 6943544 ENCODE Processing Pipeline e0584d3c2b4152b57ee1011564dc3c67 https://www.encodeproject.org/files/ENCFF765UQI/@@download/ENCFF765UQI.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF530RTW bed narrowPeak peaks ENCSR949NVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF639-human ENCAB788TCB DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF382EGR, ENCFF572AJL, ENCFF581ZJL 7246105 ENCODE Processing Pipeline 749d648811406cb9c58b2dd809531f68 https://www.encodeproject.org/files/ENCFF530RTW/@@download/ENCFF530RTW.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF211EQN bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human ENCAB728YTO DNA False 2017-02-13 ENCODE 2 ENCFF129IXY, ENCFF949SXE 7188875 ENCODE Processing Pipeline 9503995f71ff536c4adfe93168cc0182 https://www.encodeproject.org/files/ENCFF211EQN/@@download/ENCFF211EQN.bed.gz hg19 released missing genetic modification characterization ENCFF096XNX bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human ENCAB728YTO DNA False 2017-02-13 ENCODE 1 ENCFF129IXY, ENCFF821SUV 7115701 ENCODE Processing Pipeline 0e76f84baefde2f4cff875157755018e https://www.encodeproject.org/files/ENCFF096XNX/@@download/ENCFF096XNX.bed.gz hg19 released missing genetic modification characterization ENCFF396RQL bed narrowPeak peaks ENCSR598TIR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF507-human ENCAB728YTO DNA False 2017-02-13 ENCODE 1, 2 ENCFF129IXY, ENCFF821SUV, ENCFF949SXE 7272347 ENCODE Processing Pipeline 57e11a3a632dbd8f80eb7d732dadf665 https://www.encodeproject.org/files/ENCFF396RQL/@@download/ENCFF396RQL.bed.gz hg19 released missing genetic modification characterization ENCFF079BZJ bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB447WPM DNA False 2016-11-22 ENCODE 1 ENCFF160VXC, ENCFF769UEW 6419314 ENCODE Processing Pipeline d380eda55ddb0be8f68ad0ee2bddd97f https://www.encodeproject.org/files/ENCFF079BZJ/@@download/ENCFF079BZJ.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF536DPF bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB447WPM DNA False 2016-11-22 ENCODE 1, 2 ENCFF080BSG, ENCFF160VXC, ENCFF769UEW, ENCFF834TUP 7344565 ENCODE Processing Pipeline 78fb4efce1a828c27cd255cc587deb66 https://www.encodeproject.org/files/ENCFF536DPF/@@download/ENCFF536DPF.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF849NGF bed narrowPeak peaks ENCSR568PGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB447WPM DNA False 2016-11-22 ENCODE 2 ENCFF080BSG, ENCFF160VXC, ENCFF834TUP 7073903 ENCODE Processing Pipeline c95f638a38ecf23b1d2c16768da90c41 https://www.encodeproject.org/files/ENCFF849NGF/@@download/ENCFF849NGF.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking, moderate library complexity ENCFF171LJW bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB104FWW DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF624TXF 5897849 ENCODE Processing Pipeline e77ca1dd2ba5e555688871ed01753bc8 https://www.encodeproject.org/files/ENCFF171LJW/@@download/ENCFF171LJW.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF109EWV bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB104FWW DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF492UHU, ENCFF581ZJL, ENCFF624TXF 7041721 ENCODE Processing Pipeline 75ce8e52c3e1dcb728473af3e4b217db https://www.encodeproject.org/files/ENCFF109EWV/@@download/ENCFF109EWV.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF970QSE bed narrowPeak peaks ENCSR711SNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB104FWW DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF492UHU 6315831 ENCODE Processing Pipeline 452e82234e245d6bffd74b9e4d727469 https://www.encodeproject.org/files/ENCFF970QSE/@@download/ENCFF970QSE.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF001VPF bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AMD DNA see document see document False 2012-05-14 ENCODE 635418 Michael Snyder, Stanford ca98f991de776737876fa7ed62528aaf https://www.encodeproject.org/files/ENCFF001VPF/@@download/ENCFF001VPF.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF976ZTX bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AMD DNA see document see document False 2012-05-14 ENCODE 1 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU 5026248 ENCODE Processing Pipeline e1c449a8b60fd62bdb4142bad0d04618 https://www.encodeproject.org/files/ENCFF976ZTX/@@download/ENCFF976ZTX.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF696JUU bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AMD DNA see document see document False 2012-05-14 ENCODE 2 ENCFF498SAC, ENCFF962ELB 4050836 ENCODE Processing Pipeline 4a44bab8f4bcead504e3cb3893aca4f3 https://www.encodeproject.org/files/ENCFF696JUU/@@download/ENCFF696JUU.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF377VMB bed narrowPeak peaks ENCSR000EFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens UBTF-human ENCAB000AMD DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF498SAC, ENCFF732TLR, ENCFF832GXU, ENCFF962ELB 5493241 ENCODE Processing Pipeline d1b004d8d683537268870dc48ec68744 https://www.encodeproject.org/files/ENCFF377VMB/@@download/ENCFF377VMB.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF575RVG bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF143UTJ, ENCFF930DZH 5377635 ENCODE Processing Pipeline 5a7b9d48c880acef56539f484bac771f https://www.encodeproject.org/files/ENCFF575RVG/@@download/ENCFF575RVG.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF597WGL bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF143UTJ, ENCFF811OUA, ENCFF930DZH 6898473 ENCODE Processing Pipeline e49f7c3e1565644a28c7115c97376563 https://www.encodeproject.org/files/ENCFF597WGL/@@download/ENCFF597WGL.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF225CMV bed narrowPeak peaks ENCSR787RVK ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TSC22D4-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF811OUA, ENCFF930DZH 6133241 ENCODE Processing Pipeline 61a68c1a03eaf0f52bcfe393211fd5ec https://www.encodeproject.org/files/ENCFF225CMV/@@download/ENCFF225CMV.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF001VOX bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 11234 Sherman Weissman, Yale 0e0b41674a2ac38f2a4ddab39d1a3845 https://www.encodeproject.org/files/ENCFF001VOX/@@download/ENCFF001VOX.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF395EZO bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF936IVO 2031796 ENCODE Processing Pipeline 044c3443fb18e648aac8a508ae8bf281 https://www.encodeproject.org/files/ENCFF395EZO/@@download/ENCFF395EZO.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF926XFR bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 2 ENCFF650MOB, ENCFF972AYH 2979768 ENCODE Processing Pipeline fa285962e1b274aac8605f7db6eeabb4 https://www.encodeproject.org/files/ENCFF926XFR/@@download/ENCFF926XFR.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF054VTQ bed narrowPeak peaks ENCSR000FAT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT2-human ENCAB000ALG DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF650MOB, ENCFF936IVO, ENCFF972AYH 4433602 ENCODE Processing Pipeline 04b7f3a31a6f8ac0178fa69a9d71f62c https://www.encodeproject.org/files/ENCFF054VTQ/@@download/ENCFF054VTQ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF793DLG bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB267HGJ DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF064POH, ENCFF581ZJL, ENCFF844VCV 7070418 ENCODE Processing Pipeline a4930ee85a6863d8332bc694c92ff0a4 https://www.encodeproject.org/files/ENCFF793DLG/@@download/ENCFF793DLG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF037BJD bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB267HGJ DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF844VCV 6046939 ENCODE Processing Pipeline d2b5c4be0b5525b49291ebf01a7449b5 https://www.encodeproject.org/files/ENCFF037BJD/@@download/ENCFF037BJD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF261TNJ bed narrowPeak peaks ENCSR325DER ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB267HGJ DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF064POH 6196483 ENCODE Processing Pipeline 9671e3446e9e32e48a778781a5077bde https://www.encodeproject.org/files/ENCFF261TNJ/@@download/ENCFF261TNJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF001VPP bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human ENCAB000AMW DNA see document see document False 2012-08-20 ENCODE 1353696 Michael Snyder, Stanford 306c904ab969183a2dbaf7482691ec1d https://www.encodeproject.org/files/ENCFF001VPP/@@download/ENCFF001VPP.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF319WWO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human ENCAB000AMW DNA see document see document False 2012-08-20 ENCODE 1 ENCFF447POJ, ENCFF710NTS 4912704 ENCODE Processing Pipeline 3a6b86cbec7a587932391516e814c285 https://www.encodeproject.org/files/ENCFF319WWO/@@download/ENCFF319WWO.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF722BEI bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human ENCAB000AMW DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF134QYH, ENCFF447POJ, ENCFF710NTS 5546849 ENCODE Processing Pipeline 527e75b296d4d1ed2edee4070e99694c https://www.encodeproject.org/files/ENCFF722BEI/@@download/ENCFF722BEI.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF913KLO bed narrowPeak peaks ENCSR000EFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF384-human ENCAB000AMW DNA see document see document False 2012-08-20 ENCODE 2 ENCFF134QYH, ENCFF710NTS 4952514 ENCODE Processing Pipeline b06fec22d524fcd17581a927c4a190ca https://www.encodeproject.org/files/ENCFF913KLO/@@download/ENCFF913KLO.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF058DFD bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF523PEG, ENCFF773XAD, ENCFF918WMQ 6166034 ENCODE Processing Pipeline 76e0de8a5ea139b2ab650f2a5c6e81cb https://www.encodeproject.org/files/ENCFF058DFD/@@download/ENCFF058DFD.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF138XJT bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF523PEG, ENCFF773XAD 5167428 ENCODE Processing Pipeline 1a4fc262ff8b6b7d1b7a7af59ee3373f https://www.encodeproject.org/files/ENCFF138XJT/@@download/ENCFF138XJT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF165PIM bed narrowPeak peaks ENCSR359NFW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-USF2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF773XAD, ENCFF918WMQ 5438648 ENCODE Processing Pipeline 45571ed9fb10e650d229fc35923273d2 https://www.encodeproject.org/files/ENCFF165PIM/@@download/ENCFF165PIM.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF216MFC bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB986MDC DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP 7126296 ENCODE Processing Pipeline ba5c63ea5c27ef70e0538c87ad9ca064 https://www.encodeproject.org/files/ENCFF216MFC/@@download/ENCFF216MFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF069GYB bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB986MDC DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF170DKK, ENCFF834TUP, ENCFF991XPF 7283592 ENCODE Processing Pipeline 97b6ccb994b891eb94263b3ec1c98b26 https://www.encodeproject.org/files/ENCFF069GYB/@@download/ENCFF069GYB.bed.gz hg19 released mild to moderate bottlenecking ENCFF869KQW bed narrowPeak peaks ENCSR065XVO ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHAMP1-human ENCAB986MDC DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF991XPF 6932464 ENCODE Processing Pipeline 3273e779c299bdeae6219e06b81c38f9 https://www.encodeproject.org/files/ENCFF869KQW/@@download/ENCFF869KQW.bed.gz hg19 released mild to moderate bottlenecking ENCFF883SHN bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human ENCAB000BML DNA formaldehyde False 2017-06-07 ENCODE 2, 3 ENCFF051LWI, ENCFF256EDM, ENCFF581ZJL, ENCFF642HGZ 7275592 ENCODE Processing Pipeline d52c2dfc5e7b427d4e4b4a850ee1f509 https://www.encodeproject.org/files/ENCFF883SHN/@@download/ENCFF883SHN.bed.gz hg19 released mild to moderate bottlenecking ENCFF976RBY bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human ENCAB000BML DNA formaldehyde False 2017-06-07 ENCODE 2 ENCFF051LWI, ENCFF256EDM 7083861 ENCODE Processing Pipeline 4e66d1f98e7e419ea59e2f50a4f92889 https://www.encodeproject.org/files/ENCFF976RBY/@@download/ENCFF976RBY.bed.gz hg19 released mild to moderate bottlenecking ENCFF326WKP bed narrowPeak peaks ENCSR914NEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA3-human ENCAB000BML DNA formaldehyde False 2017-06-07 ENCODE 3 ENCFF581ZJL, ENCFF642HGZ 6920691 ENCODE Processing Pipeline ea33ee518a15d0bfeef4315a1e029870 https://www.encodeproject.org/files/ENCFF326WKP/@@download/ENCFF326WKP.bed.gz hg19 released mild to moderate bottlenecking ENCFF131YKB bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human ENCAB000AAG DNA see document see document False 2014-07-07 ENCODE 1 ENCFF310TZE, ENCFF747SPK 6404445 ENCODE Processing Pipeline ce527a6d51afbb56bee2e1ff7aa357bf https://www.encodeproject.org/files/ENCFF131YKB/@@download/ENCFF131YKB.bed.gz hg19 released antibody characterized with exemption ENCFF875TQG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human ENCAB000AAG DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF701AOA 6802573 ENCODE Processing Pipeline 51bb4cfa7573995a9a30f2d4d51524c1 https://www.encodeproject.org/files/ENCFF875TQG/@@download/ENCFF875TQG.bed.gz hg19 released antibody characterized with exemption ENCFF235FTG bed narrowPeak peaks ENCSR000FCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD5-human ENCAB000AAG DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF310TZE, ENCFF701AOA, ENCFF747SPK 7184972 ENCODE Processing Pipeline ebea0ab3ee602810ee67f0f4c8e5709b https://www.encodeproject.org/files/ENCFF235FTG/@@download/ENCFF235FTG.bed.gz hg19 released antibody characterized with exemption ENCFF544REW bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB952VOF DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF634JQQ 6694070 ENCODE Processing Pipeline 59eacda1b4c81306cc76878e34ac55dd https://www.encodeproject.org/files/ENCFF544REW/@@download/ENCFF544REW.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF729TVF bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB952VOF DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF330WGJ, ENCFF581ZJL, ENCFF634JQQ 7241031 ENCODE Processing Pipeline b120d41e06e0664f32c740a42e0d4006 https://www.encodeproject.org/files/ENCFF729TVF/@@download/ENCFF729TVF.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF422XRA bed narrowPeak peaks ENCSR621ATC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB952VOF DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF330WGJ 6984393 ENCODE Processing Pipeline ca24922c8643afe2720b83cc333e2c6b https://www.encodeproject.org/files/ENCFF422XRA/@@download/ENCFF422XRA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody ENCFF472SCD bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF243GPO, ENCFF538HUN 6005884 ENCODE Processing Pipeline 2bab94bc6306c9d1f5743617b8c62493 https://www.encodeproject.org/files/ENCFF472SCD/@@download/ENCFF472SCD.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF260RNL bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF243GPO, ENCFF775KLX 6032960 ENCODE Processing Pipeline f8148af9c2ae9084fb7a592c87363903 https://www.encodeproject.org/files/ENCFF260RNL/@@download/ENCFF260RNL.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF195EMK bed narrowPeak peaks ENCSR011PEI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF175-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF243GPO, ENCFF538HUN, ENCFF775KLX 6703095 ENCODE Processing Pipeline 585759a6549be2f387282f46e4840c70 https://www.encodeproject.org/files/ENCFF195EMK/@@download/ENCFF195EMK.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF483NEI bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB552CAO DNA False 2016-10-31 ENCODE 1 ENCFF361VCB, ENCFF581ZJL 6513282 ENCODE Processing Pipeline c770544017dc29caa52a24fae3ce7366 https://www.encodeproject.org/files/ENCFF483NEI/@@download/ENCFF483NEI.bed.gz hg19 released low read depth ENCFF118YQO bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB552CAO DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF889BVE 6858994 ENCODE Processing Pipeline 7763099fa0d7ef87e37db04101e1b836 https://www.encodeproject.org/files/ENCFF118YQO/@@download/ENCFF118YQO.bed.gz hg19 released low read depth ENCFF788QDP bed narrowPeak peaks ENCSR175SZH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB552CAO DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF361VCB, ENCFF581ZJL, ENCFF889BVE 7227272 ENCODE Processing Pipeline 03a6c1c79824a0d64677b31384f15103 https://www.encodeproject.org/files/ENCFF788QDP/@@download/ENCFF788QDP.bed.gz hg19 released low read depth ENCFF958LLL bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human ENCAB463LOX DNA False 2016-10-31 ENCODE 1 ENCFF469DEJ, ENCFF581ZJL 6673322 ENCODE Processing Pipeline 975a07ecd07b60af1afa02f8d730bce8 https://www.encodeproject.org/files/ENCFF958LLL/@@download/ENCFF958LLL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption ENCFF904JFG bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human ENCAB463LOX DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF745TZN 6852614 ENCODE Processing Pipeline 500d04a0c0adb72a12ce4c535498d6d5 https://www.encodeproject.org/files/ENCFF904JFG/@@download/ENCFF904JFG.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption ENCFF940ADN bed narrowPeak peaks ENCSR987PBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens DNMT1-human ENCAB463LOX DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF469DEJ, ENCFF581ZJL, ENCFF745TZN 7229913 ENCODE Processing Pipeline 7d69edafb10a4b1d2e93dfe0429cfdff https://www.encodeproject.org/files/ENCFF940ADN/@@download/ENCFF940ADN.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, antibody characterized with exemption ENCFF416FBH bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human ENCAB000BJN DNA False 2016-06-28 ENCODE 1 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD 6354589 ENCODE Processing Pipeline 9838d379404171f2fb9406628afb8ef6 https://www.encodeproject.org/files/ENCFF416FBH/@@download/ENCFF416FBH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF929FJI bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human ENCAB000BJN DNA False 2016-06-28 ENCODE 2 ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 5900193 ENCODE Processing Pipeline cfbcf03baa291b99beb93586aa3f37cd https://www.encodeproject.org/files/ENCFF929FJI/@@download/ENCFF929FJI.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF429ZJG bed narrowPeak peaks ENCSR331GDC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB11-human ENCAB000BJN DNA False 2016-06-28 ENCODE 1, 2 ENCFF144CPG, ENCFF227XXD, ENCFF454QBD, ENCFF953SAQ 6721454 ENCODE Processing Pipeline f11c47d20371228932e49a1b4b9c3ef5 https://www.encodeproject.org/files/ENCFF429ZJG/@@download/ENCFF429ZJG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF001UKT bed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-07-18 ENCODE 1 1 761817 Richard Myers, HAIB 565f9ad826cef16de8d415a996a4ad7f https://www.encodeproject.org/files/ENCFF001UKT/@@download/ENCFF001UKT.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UKU bed broadPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-07-18 ENCODE 2 1 895255 Richard Myers, HAIB c28ca2b77ed0744ecc40bf064d950949 https://www.encodeproject.org/files/ENCFF001UKU/@@download/ENCFF001UKU.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF773FKD bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-07-18 ENCODE 1 ENCFF359UUS, ENCFF750MIM 6546659 ENCODE Processing Pipeline 08864145e19459cd310de1f439f45367 https://www.encodeproject.org/files/ENCFF773FKD/@@download/ENCFF773FKD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF481CBJ bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF359UUS, ENCFF750MIM, ENCFF822HFC 6982709 ENCODE Processing Pipeline a13e01909d8bafdf7d8847c8ab5fb890 https://www.encodeproject.org/files/ENCFF481CBJ/@@download/ENCFF481CBJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF281VBW bed narrowPeak peaks ENCSR000BMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF822HFC 6390721 ENCODE Processing Pipeline 7a0c6ee271e217a9d7a0739ed77a469e https://www.encodeproject.org/files/ENCFF281VBW/@@download/ENCFF281VBW.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF404ZDG bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB442TBN DNA False 2017-05-17 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO, ENCFF890PMJ 7160496 ENCODE Processing Pipeline e47da557586eb7ddb30ef039b8df8649 https://www.encodeproject.org/files/ENCFF404ZDG/@@download/ENCFF404ZDG.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF700RYG bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB442TBN DNA False 2017-05-17 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF584YHO 6326551 ENCODE Processing Pipeline d157d3b7aa72362fc82037deaf06629a https://www.encodeproject.org/files/ENCFF700RYG/@@download/ENCFF700RYG.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF804WBF bed narrowPeak peaks ENCSR832OGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens LEF1-human ENCAB442TBN DNA False 2017-05-17 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF890PMJ 6701862 ENCODE Processing Pipeline 88d61b687f13462c227585bd884c04b5 https://www.encodeproject.org/files/ENCFF804WBF/@@download/ENCFF804WBF.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF118EOA bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human ENCAB782ZNQ DNA False 2017-01-08 ENCODE 1, 2 ENCFF162YLU, ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 4441877 ENCODE Processing Pipeline a073d466810f865c5036a394aa4150d3 https://www.encodeproject.org/files/ENCFF118EOA/@@download/ENCFF118EOA.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF875ITP bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human ENCAB782ZNQ DNA False 2017-01-08 ENCODE 1 ENCFF207FFX, ENCFF245PJA, ENCFF574XYY 6496431 ENCODE Processing Pipeline 573f75d1fa10e63ede230866edb301d9 https://www.encodeproject.org/files/ENCFF875ITP/@@download/ENCFF875ITP.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF267CBS bed narrowPeak peaks ENCSR583ACG ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRD4-human ENCAB782ZNQ DNA False 2017-01-08 ENCODE 2 ENCFF162YLU, ENCFF245PJA 5987659 ENCODE Processing Pipeline ddfca0067976c24be42533ed23458433 https://www.encodeproject.org/files/ENCFF267CBS/@@download/ENCFF267CBS.bed.gz hg19 released control low read depth, inconsistent platforms ENCFF999XQG bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF359SKD, ENCFF434TTY, ENCFF846HRR 7222742 ENCODE Processing Pipeline ac11c8049c3ce981169abdc6c69c5266 https://www.encodeproject.org/files/ENCFF999XQG/@@download/ENCFF999XQG.bed.gz hg19 released missing genetic modification characterization ENCFF847LNA bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF359SKD, ENCFF434TTY 7055585 ENCODE Processing Pipeline 0db6cf378fe8914bdee0eeae2d02fc08 https://www.encodeproject.org/files/ENCFF847LNA/@@download/ENCFF847LNA.bed.gz hg19 released missing genetic modification characterization ENCFF162YHD bed narrowPeak peaks ENCSR706BJO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB11-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF359SKD, ENCFF846HRR 6911168 ENCODE Processing Pipeline 5e8431bc30b30d1ab3f1b30703317636 https://www.encodeproject.org/files/ENCFF162YHD/@@download/ENCFF162YHD.bed.gz hg19 released missing genetic modification characterization ENCFF001SYW bed broadPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-08-06 ENCODE 614924 Bradley Bernstein, Broad 334bfb72b3e91de1d8966cfe7487839d https://www.encodeproject.org/files/ENCFF001SYW/@@download/ENCFF001SYW.bed.gz hg19 archived control low read depth, inconsistent platforms, low read length missing derived_from ENCFF397GWD bed narrowPeak peaks ENCSR000ATV ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX3-human ENCAB000AEW DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF614QMP 4495477 ENCODE Processing Pipeline e8e09d5d180d98eb388d73ab00363db8 https://www.encodeproject.org/files/ENCFF397GWD/@@download/ENCFF397GWD.bed.gz hg19 released control low read depth, inconsistent platforms, low read length ENCFF001TAA bed broadPeak peaks ENCSR000ATM ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB000AKI, ENCAB584CZQ, ENCAB937ZMF DNA see document see document False 2012-08-06 ENCODE 225186 Bradley Bernstein, Broad 00475f060154db0d5022ee945cd3054e https://www.encodeproject.org/files/ENCFF001TAA/@@download/ENCFF001TAA.bed.gz hg19 released mixed read lengths, inconsistent platforms, low read length missing derived_from ENCFF418WIA bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human ENCAB939ONI DNA False 2017-05-17 ENCODE 2 ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7030043 ENCODE Processing Pipeline 548036a1564917488e5a98e4507384f0 https://www.encodeproject.org/files/ENCFF418WIA/@@download/ENCFF418WIA.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking missing control alignments ENCFF198CPZ bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human ENCAB939ONI DNA False 2017-05-17 ENCODE 1 ENCFF033PRP, ENCFF160VXC 6717709 ENCODE Processing Pipeline f4b1a73f9cff8d1402fcf2f19e0fea73 https://www.encodeproject.org/files/ENCFF198CPZ/@@download/ENCFF198CPZ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking missing control alignments ENCFF849HOO bed narrowPeak peaks ENCSR547LKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATAD2B-human ENCAB939ONI DNA False 2017-05-17 ENCODE 1, 2 ENCFF033PRP, ENCFF160VXC, ENCFF834TUP, ENCFF877LYM 7253108 ENCODE Processing Pipeline 3a370546d1a46cbcefbf349fa1d6e9f0 https://www.encodeproject.org/files/ENCFF849HOO/@@download/ENCFF849HOO.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking missing control alignments ENCFF584ZGO bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 1, 2 ENCFF160VXC, ENCFF282YII, ENCFF682WTZ, ENCFF834TUP 7248295 ENCODE Processing Pipeline a1ed7479c644b147a2bb7e692edf573f https://www.encodeproject.org/files/ENCFF584ZGO/@@download/ENCFF584ZGO.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF620EUP bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 1 ENCFF160VXC, ENCFF682WTZ, ENCFF834TUP 7172221 ENCODE Processing Pipeline 1dfaa7944b26740a476409b2fbc05319 https://www.encodeproject.org/files/ENCFF620EUP/@@download/ENCFF620EUP.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF675VGK bed narrowPeak peaks ENCSR910JAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 2 ENCFF282YII, ENCFF834TUP 6846730 ENCODE Processing Pipeline 8d55e7ff85dcc1b6539585c43df576c4 https://www.encodeproject.org/files/ENCFF675VGK/@@download/ENCFF675VGK.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF606MZK bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2016-06-16 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862RTJ 5843860 ENCODE Processing Pipeline 951c843562da6d636f7e4f4647195342 https://www.encodeproject.org/files/ENCFF606MZK/@@download/ENCFF606MZK.bed.gz hg19 released low read depth, moderate library complexity ENCFF892HJT bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2016-06-16 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ 5874459 ENCODE Processing Pipeline f7b54c7101852b2eae0e6453528c8cd5 https://www.encodeproject.org/files/ENCFF892HJT/@@download/ENCFF892HJT.bed.gz hg19 released low read depth, moderate library complexity ENCFF559ITE bed narrowPeak peaks ENCSR837EYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLM DNA False 2016-06-16 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF742QOQ, ENCFF862RTJ 6386406 ENCODE Processing Pipeline 1bc4bd7836fca6a87e852936ce357253 https://www.encodeproject.org/files/ENCFF559ITE/@@download/ENCFF559ITE.bed.gz hg19 released low read depth, moderate library complexity ENCFF124ZGQ bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human ENCAB406ZKT DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF650WIA 6505261 ENCODE Processing Pipeline a84f6e7f61469eeb3bde492893558f04 https://www.encodeproject.org/files/ENCFF124ZGQ/@@download/ENCFF124ZGQ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF457XPX bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human ENCAB406ZKT DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF254KBN 6769825 ENCODE Processing Pipeline 4637ee3d180c920116d1cf40c67d71cf https://www.encodeproject.org/files/ENCFF457XPX/@@download/ENCFF457XPX.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF103VVN bed narrowPeak peaks ENCSR524BUE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD51-human ENCAB406ZKT DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF254KBN, ENCFF581ZJL, ENCFF650WIA 7210514 ENCODE Processing Pipeline 3dc7e986e4f8a8b49de1471db3ef0890 https://www.encodeproject.org/files/ENCFF103VVN/@@download/ENCFF103VVN.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking ENCFF001SYZ bed broadPeak peaks ENCSR000AVD ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHD7-human ENCAB000AFI DNA see document see document False 2012-08-06 ENCODE 499731 Bradley Bernstein, Broad 79b385d896957e36751996871dfea459 https://www.encodeproject.org/files/ENCFF001SYZ/@@download/ENCFF001SYZ.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing raw data in replicate, missing derived_from ENCFF001VMS bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 746853 Michael Snyder, Stanford a578f5369f477f5344dcab4b71263c6b https://www.encodeproject.org/files/ENCFF001VMS/@@download/ENCFF001VMS.bed.gz hg19 archived borderline replicate concordance, low read depth, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth missing control alignments ENCFF199SKV bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF309ANN, ENCFF632LZV 5455388 ENCODE Processing Pipeline 9c12aa3979b8f0bddc5305ce0e8450b8 https://www.encodeproject.org/files/ENCFF199SKV/@@download/ENCFF199SKV.bed.gz hg19 released borderline replicate concordance, low read depth, low read length biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF859MQB bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF632LZV 5152875 ENCODE Processing Pipeline 71baec99e51af3ddd25dbb5560627e68 https://www.encodeproject.org/files/ENCFF859MQB/@@download/ENCFF859MQB.bed.gz hg19 released borderline replicate concordance, low read depth, low read length biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF357NBU bed narrowPeak peaks ENCSR000EGS ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF309ANN 4223795 ENCODE Processing Pipeline 69a2a9af103dd227176648e42edaee29 https://www.encodeproject.org/files/ENCFF357NBU/@@download/ENCFF357NBU.bed.gz hg19 released borderline replicate concordance, low read depth, low read length biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF653KSG bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB000BQH DNA False 2016-04-01 ENCODE 2 ENCFF061QOJ, ENCFF697MUV 5013280 ENCODE Processing Pipeline 3b05dbf77ef7c94afb2756e092c442af https://www.encodeproject.org/files/ENCFF653KSG/@@download/ENCFF653KSG.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF274QRN bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB000BQH DNA False 2016-04-01 ENCODE 1 ENCFF444TNY, ENCFF687NJZ 6619368 ENCODE Processing Pipeline 9623122622e543751f25f98e9569871c https://www.encodeproject.org/files/ENCFF274QRN/@@download/ENCFF274QRN.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF321EBZ bed narrowPeak peaks ENCSR642VZY ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM4B-human ENCAB000BQH DNA False 2016-04-01 ENCODE 1, 2 ENCFF061QOJ, ENCFF444TNY, ENCFF687NJZ, ENCFF697MUV 7082793 ENCODE Processing Pipeline 38d601c00b062ea1c82507bfe9a3f98c https://www.encodeproject.org/files/ENCFF321EBZ/@@download/ENCFF321EBZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF224GWU bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human ENCAB000ATZ DNA False 2016-06-14 ENCODE 1 ENCFF056YEU, ENCFF581ZJL 6885777 ENCODE Processing Pipeline 70192d3307157e7e26c82dba98d77c9d https://www.encodeproject.org/files/ENCFF224GWU/@@download/ENCFF224GWU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF035WWJ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human ENCAB000ATZ DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF688SSK 6996638 ENCODE Processing Pipeline 1e16fc976551c3b160a13c72af02467e https://www.encodeproject.org/files/ENCFF035WWJ/@@download/ENCFF035WWJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF359OAZ bed narrowPeak peaks ENCSR970NKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F1-human ENCAB000ATZ DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF056YEU, ENCFF581ZJL, ENCFF688SSK 7160460 ENCODE Processing Pipeline 505401679b58f689a58f4932a8bc76d7 https://www.encodeproject.org/files/ENCFF359OAZ/@@download/ENCFF359OAZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF801APL bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human ENCAB728YTO DNA False 2017-12-04 ENCODE 1 ENCFF254TEL, ENCFF834IGQ 6631369 ENCODE Processing Pipeline 62a35ad14213b01f4f8e77964222add6 https://www.encodeproject.org/files/ENCFF801APL/@@download/ENCFF801APL.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF671LDD bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human ENCAB728YTO DNA False 2017-12-04 ENCODE 3 ENCFF834IGQ, ENCFF947NGO 6548124 ENCODE Processing Pipeline 6ee22c93011130ba8a66ce84ce98bd8c https://www.encodeproject.org/files/ENCFF671LDD/@@download/ENCFF671LDD.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF925XFR bed narrowPeak peaks ENCSR462QZZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF395-human ENCAB728YTO DNA False 2017-12-04 ENCODE 1, 3 ENCFF254TEL, ENCFF834IGQ, ENCFF947NGO 7107484 ENCODE Processing Pipeline 38d43b46a268223a6125a06091da88f8 https://www.encodeproject.org/files/ENCFF925XFR/@@download/ENCFF925XFR.bed.gz hg19 released control low read depth, missing genetic modification characterization experiment not submitted to GEO ENCFF220RNG bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB728YTO DNA False 2016-02-16 ENCODE 2 ENCFF107MLR, ENCFF252CHQ 6606473 ENCODE Processing Pipeline 43932076034d45a823611b45b7834918 https://www.encodeproject.org/files/ENCFF220RNG/@@download/ENCFF220RNG.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF867FAH bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1 ENCFF252CHQ, ENCFF301KAZ 6432766 ENCODE Processing Pipeline 9f722049e31e1819e6720a49090a9aea https://www.encodeproject.org/files/ENCFF867FAH/@@download/ENCFF867FAH.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF690UHD bed narrowPeak peaks ENCSR835TCD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1, 2 ENCFF107MLR, ENCFF252CHQ, ENCFF301KAZ 7204826 ENCODE Processing Pipeline 049afae9508ac7be86a5e93e1e645d93 https://www.encodeproject.org/files/ENCFF690UHD/@@download/ENCFF690UHD.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF777YSR bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF189PKR, ENCFF197TMV 5399571 ENCODE Processing Pipeline 2648b73e01a12bf1d770eab481d3b4cd https://www.encodeproject.org/files/ENCFF777YSR/@@download/ENCFF777YSR.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF267PBD bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF189PKR, ENCFF197TMV, ENCFF578CTB 6518597 ENCODE Processing Pipeline 0a4010fb28336840612f4e3a90f0bd36 https://www.encodeproject.org/files/ENCFF267PBD/@@download/ENCFF267PBD.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF828PUB bed narrowPeak peaks ENCSR635GTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TEAD2-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF189PKR, ENCFF578CTB 5546344 ENCODE Processing Pipeline c47fb2cc45bcf3ff555033405150d4b0 https://www.encodeproject.org/files/ENCFF828PUB/@@download/ENCFF828PUB.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF947YAZ bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human ENCAB313DWJ DNA False 2017-12-04 ENCODE 3 ENCFF051LWI, ENCFF269TSX 6699428 ENCODE Processing Pipeline e0482bbe6d31e3317b2ce16c4f30168d https://www.encodeproject.org/files/ENCFF947YAZ/@@download/ENCFF947YAZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO ENCFF620PQN bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human ENCAB313DWJ DNA False 2017-12-04 ENCODE 1, 3 ENCFF051LWI, ENCFF269TSX, ENCFF662JMK 7206856 ENCODE Processing Pipeline 8c94e223846ea8a672e133d7817de491 https://www.encodeproject.org/files/ENCFF620PQN/@@download/ENCFF620PQN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO ENCFF036DTR bed narrowPeak peaks ENCSR519WMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCC2-human ENCAB313DWJ DNA False 2017-12-04 ENCODE 1 ENCFF051LWI, ENCFF662JMK 6792553 ENCODE Processing Pipeline 87d188037f4f45022e2f4c6b2523115d https://www.encodeproject.org/files/ENCFF036DTR/@@download/ENCFF036DTR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity experiment not submitted to GEO ENCFF292SNP bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human ENCAB272JJF DNA False 2017-05-17 ENCODE 2 ENCFF753LGT, ENCFF834TUP 7252193 ENCODE Processing Pipeline e75f3e53f1fb259d8bc04167166d255b https://www.encodeproject.org/files/ENCFF292SNP/@@download/ENCFF292SNP.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking ENCFF351DKB bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human ENCAB272JJF DNA False 2017-05-17 ENCODE 1 ENCFF160VXC, ENCFF822VWX, ENCFF834TUP 7258939 ENCODE Processing Pipeline 96bc24b8a37c141356d2d757d60d26ec https://www.encodeproject.org/files/ENCFF351DKB/@@download/ENCFF351DKB.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking ENCFF754CMK bed narrowPeak peaks ENCSR796ITY ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFIC-human ENCAB272JJF DNA False 2017-05-17 ENCODE 1, 2 ENCFF160VXC, ENCFF753LGT, ENCFF822VWX, ENCFF834TUP 7301117 ENCODE Processing Pipeline 6f2bd3fb9c8d0f1fe300daa205cb1e3f https://www.encodeproject.org/files/ENCFF754CMK/@@download/ENCFF754CMK.bed.gz hg19 released inconsistent platforms, mild to moderate bottlenecking ENCFF681CMB bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human ENCAB401CSY DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF180WYS, ENCFF641CEP 5819204 ENCODE Processing Pipeline 4ddb077d189adb2ff36f36687fabb5cf https://www.encodeproject.org/files/ENCFF681CMB/@@download/ENCFF681CMB.bed.gz hg19 released low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF897BPO bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human ENCAB401CSY DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF214QGI, ENCFF493QSH 5697366 ENCODE Processing Pipeline d3bd0b546b414a6fbca8eefc9ff5495d https://www.encodeproject.org/files/ENCFF897BPO/@@download/ENCFF897BPO.bed.gz hg19 released low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF199EYR bed narrowPeak peaks ENCSR791OZM ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM25-human ENCAB401CSY DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF180WYS, ENCFF214QGI, ENCFF493QSH, ENCFF641CEP 6808347 ENCODE Processing Pipeline 615b7294fc8f64c118dd424d3340ffe0 https://www.encodeproject.org/files/ENCFF199EYR/@@download/ENCFF199EYR.bed.gz hg19 released low read depth, low read length, moderate library complexity experiment not submitted to GEO severe bottlenecking ENCFF040DGA bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human ENCAB000AMP DNA False 2016-03-02 ENCODE 2 ENCFF169POV, ENCFF879OQC 5183776 ENCODE Processing Pipeline d9c3da1be91de8c8c2e9fa1a52c88cdc https://www.encodeproject.org/files/ENCFF040DGA/@@download/ENCFF040DGA.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF511MUZ bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human ENCAB000AMP DNA False 2016-03-02 ENCODE 1, 2 ENCFF142DHE, ENCFF169POV, ENCFF335IPE, ENCFF879OQC 6576913 ENCODE Processing Pipeline 68449846a7b35262d721f508bfd0d5d4 https://www.encodeproject.org/files/ENCFF511MUZ/@@download/ENCFF511MUZ.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF656CUX bed narrowPeak peaks ENCSR882ERE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZKSCAN1-human ENCAB000AMP DNA False 2016-03-02 ENCODE 1 ENCFF142DHE, ENCFF335IPE 5509302 ENCODE Processing Pipeline 942fb93cdd4270c3101187df6db73966 https://www.encodeproject.org/files/ENCFF656CUX/@@download/ENCFF656CUX.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF001ULR bed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human ENCAB000ALW DNA see document see document False 2012-02-29 ENCODE 1 1 433550 Richard Myers, HAIB 7ab62d6adc72f387a4659bd33c6c6bef https://www.encodeproject.org/files/ENCFF001ULR/@@download/ENCFF001ULR.bed.gz hg19 archived inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF001ULT bed broadPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human ENCAB000ALW DNA see document see document False 2012-02-29 ENCODE 2 1 765383 Richard Myers, HAIB 0dcd4573da528a6e7a40ccea2eecb7a6 https://www.encodeproject.org/files/ENCFF001ULT/@@download/ENCFF001ULT.bed.gz hg19 archived inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF835OES bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human ENCAB000ALW DNA see document see document False 2012-02-29 ENCODE 2 ENCFF455XOX, ENCFF522HDC 6570249 ENCODE Processing Pipeline 212a2ff40851d7621a349d36fec6ab6d https://www.encodeproject.org/files/ENCFF835OES/@@download/ENCFF835OES.bed.gz hg19 released inconsistent platforms, low read length biological replicates with identical biosample ENCFF318EUW bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human ENCAB000ALW DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF386SKS, ENCFF455XOX, ENCFF522HDC 6938675 ENCODE Processing Pipeline fe96b53d1e25772152725bf948eb7b36 https://www.encodeproject.org/files/ENCFF318EUW/@@download/ENCFF318EUW.bed.gz hg19 released inconsistent platforms, low read length biological replicates with identical biosample ENCFF740XZM bed narrowPeak peaks ENCSR000BRK ChIP-seq EFO:0002067 K562 cell line Homo sapiens TEAD4-human ENCAB000ALW DNA see document see document False 2012-02-29 ENCODE 1 ENCFF386SKS, ENCFF522HDC 6214545 ENCODE Processing Pipeline b15faa2477afa58c67eb3d8a2425d543 https://www.encodeproject.org/files/ENCFF740XZM/@@download/ENCFF740XZM.bed.gz hg19 released inconsistent platforms, low read length biological replicates with identical biosample ENCFF876GAB bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human ENCAB722HGQ DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA, ENCFF764RCL 7139116 ENCODE Processing Pipeline 6cc214c7e617c45b6d61e88d87a5bd2d https://www.encodeproject.org/files/ENCFF876GAB/@@download/ENCFF876GAB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF218RDF bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human ENCAB722HGQ DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF636ICA 6693826 ENCODE Processing Pipeline c2da8aa63a5dc6c33fc1f4bf1f310dd1 https://www.encodeproject.org/files/ENCFF218RDF/@@download/ENCFF218RDF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF367IRL bed narrowPeak peaks ENCSR030TJP ChIP-seq EFO:0002067 K562 cell line Homo sapiens DACH1-human ENCAB722HGQ DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF764RCL 6638894 ENCODE Processing Pipeline 667ca9cb6a3cab61aeecbef471fef6e8 https://www.encodeproject.org/files/ENCFF367IRL/@@download/ENCFF367IRL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF470QLV bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human ENCAB592TEY DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF938LDN 6177835 ENCODE Processing Pipeline 9736c4051e5dd11f89ca06ed8d8caf4f https://www.encodeproject.org/files/ENCFF470QLV/@@download/ENCFF470QLV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF309FGP bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human ENCAB592TEY DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF425VIX, ENCFF572OMD 6445090 ENCODE Processing Pipeline 644311b48adc7dac81b450b4c99dcd2a https://www.encodeproject.org/files/ENCFF309FGP/@@download/ENCFF309FGP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF590JZV bed narrowPeak peaks ENCSR822LBD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBFOX2-human ENCAB592TEY DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF425VIX, ENCFF508DBG, ENCFF572OMD, ENCFF938LDN 6884691 ENCODE Processing Pipeline abfba4d54cd4c4594f984e6b7e6faa60 https://www.encodeproject.org/files/ENCFF590JZV/@@download/ENCFF590JZV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF013YBA bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB019LBH DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF456JRF, ENCFF581ZJL, ENCFF778YDK 7163683 ENCODE Processing Pipeline b14cdfadd7542923ecfed201b86fd87f https://www.encodeproject.org/files/ENCFF013YBA/@@download/ENCFF013YBA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF858SYW bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB019LBH DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF778YDK 6557419 ENCODE Processing Pipeline 029d2e306bb7105473f65d2e1499a70e https://www.encodeproject.org/files/ENCFF858SYW/@@download/ENCFF858SYW.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF197HUM bed narrowPeak peaks ENCSR439OCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF407-human ENCAB019LBH DNA False 2018-01-26 ENCODE 1 ENCFF456JRF, ENCFF581ZJL 6595225 ENCODE Processing Pipeline 314fa2ec3f2fc8d3c666dddc9f99c89b https://www.encodeproject.org/files/ENCFF197HUM/@@download/ENCFF197HUM.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF479MVC bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human ENCAB553IRN DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF455VOE, ENCFF572OMD 5043027 ENCODE Processing Pipeline faae7e59d41b29ecf813dcbfe2b03a9a https://www.encodeproject.org/files/ENCFF479MVC/@@download/ENCFF479MVC.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF882YQN bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human ENCAB553IRN DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF174JQR, ENCFF455VOE, ENCFF508DBG, ENCFF572OMD 6454217 ENCODE Processing Pipeline 62266859884ab87788c171984196e730 https://www.encodeproject.org/files/ENCFF882YQN/@@download/ENCFF882YQN.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF921LEX bed narrowPeak peaks ENCSR948KMB ChIP-seq EFO:0002067 K562 cell line Homo sapiens PTBP1-human ENCAB553IRN DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF174JQR, ENCFF508DBG 5337244 ENCODE Processing Pipeline dda5c613676ab4d729d96d4c0e99c2a9 https://www.encodeproject.org/files/ENCFF921LEX/@@download/ENCFF921LEX.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF001UJL bed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1 1 712783 Richard Myers, HAIB d48bb62e6f61c79a64d8a4a277d0873a https://www.encodeproject.org/files/ENCFF001UJL/@@download/ENCFF001UJL.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001UJM bed broadPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 2 1 ENCFF000PXT 618583 Richard Myers, HAIB 192c6cd042b8dc7ecafa5dcaca4aea57 https://www.encodeproject.org/files/ENCFF001UJM/@@download/ENCFF001UJM.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF235AXH bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1 ENCFF146HTM, ENCFF585PFH 3326792 ENCODE Processing Pipeline 1607a273700f6eefef836f47e175b8d9 https://www.encodeproject.org/files/ENCFF235AXH/@@download/ENCFF235AXH.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF443OXB bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 2 ENCFF701KUD, ENCFF866NKL 4310832 ENCODE Processing Pipeline a765467f07d8ac9c4e8183b883573cd7 https://www.encodeproject.org/files/ENCFF443OXB/@@download/ENCFF443OXB.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF815GMT bed narrowPeak peaks ENCSR000BPJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFR DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF146HTM, ENCFF585PFH, ENCFF701KUD, ENCFF866NKL 5176464 ENCODE Processing Pipeline ce6a3b47124cbd6d40e1150798e5b492 https://www.encodeproject.org/files/ENCFF815GMT/@@download/ENCFF815GMT.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF768USG bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF479IHH, ENCFF968XOX 6946843 ENCODE Processing Pipeline 745f5ce37edc7b4e7134cbfed6a06e23 https://www.encodeproject.org/files/ENCFF768USG/@@download/ENCFF768USG.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF587MUY bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF479IHH, ENCFF729SVH 6674009 ENCODE Processing Pipeline 3478ef7e080c45e4d353062fb4157e75 https://www.encodeproject.org/files/ENCFF587MUY/@@download/ENCFF587MUY.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF887PEG bed narrowPeak peaks ENCSR729HVR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF644-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF479IHH, ENCFF729SVH, ENCFF968XOX 7208367 ENCODE Processing Pipeline 468c5f095b3bfa17490c180ac3fb2ec4 https://www.encodeproject.org/files/ENCFF887PEG/@@download/ENCFF887PEG.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF723ESB bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB144WPX DNA False 2016-04-22 ENCODE 1 ENCFF475POO, ENCFF581ZJL 6989631 ENCODE Processing Pipeline c5a9c9206e878fe8941bc3ea139ce753 https://www.encodeproject.org/files/ENCFF723ESB/@@download/ENCFF723ESB.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF669ACI bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB144WPX DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF572MZM 7096163 ENCODE Processing Pipeline b03385abd664a172cb86eefdadf9db0a https://www.encodeproject.org/files/ENCFF669ACI/@@download/ENCFF669ACI.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF038VEX bed narrowPeak peaks ENCSR395HWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens IKZF1-human ENCAB144WPX DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF475POO, ENCFF572MZM, ENCFF581ZJL 7196410 ENCODE Processing Pipeline 5c35cc55400ee755f9c829f3ec65fbd0 https://www.encodeproject.org/files/ENCFF038VEX/@@download/ENCFF038VEX.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF608GUA bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 6485442 ENCODE Processing Pipeline 3c6a1d69c22cc2308208f4b1923c105b https://www.encodeproject.org/files/ENCFF608GUA/@@download/ENCFF608GUA.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF924ENQ bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4790813 ENCODE Processing Pipeline 1796f8c5ec325de31bd279836a44dc3e https://www.encodeproject.org/files/ENCFF924ENQ/@@download/ENCFF924ENQ.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF194DPB bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 5260968 ENCODE Processing Pipeline 77912b8e64ebf6573a59dd80c16e9e84 https://www.encodeproject.org/files/ENCFF194DPB/@@download/ENCFF194DPB.bed.gz hg19 released low read depth, low read length missing control alignments ENCFF349DOV bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF899GZH 4973568 ENCODE Processing Pipeline 5207521ced5ffdc41c59ac3c68d6ba0a https://www.encodeproject.org/files/ENCFF349DOV/@@download/ENCFF349DOV.bed.gz hg19 archived low read depth, low read length missing control alignments ENCFF076QRM bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 3 ENCFF845YHI, ENCFF879OQC 5395752 ENCODE Processing Pipeline 1ccda4371d5402a9011ac952a3684b18 https://www.encodeproject.org/files/ENCFF076QRM/@@download/ENCFF076QRM.bed.gz hg19 archived low read depth, low read length missing control alignments ENCFF207BTX bed narrowPeak peaks ENCSR557RVF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZHX1-human ENCAB361RPF DNA False 2014-07-07 ENCODE 1, 3 ENCFF335IPE, ENCFF845YHI, ENCFF879OQC, ENCFF899GZH 6661666 ENCODE Processing Pipeline 154f6e3919a5d7f5e10f183b10139295 https://www.encodeproject.org/files/ENCFF207BTX/@@download/ENCFF207BTX.bed.gz hg19 archived low read depth, low read length missing control alignments ENCFF996FCB bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human ENCAB301QLE DNA False 2016-11-17 ENCODE 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV 6072101 ENCODE Processing Pipeline 6a573d9edf0d948d5d9e9723b9b2c238 https://www.encodeproject.org/files/ENCFF996FCB/@@download/ENCFF996FCB.bed.gz hg19 released mild to moderate bottlenecking ENCFF113ZZY bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human ENCAB301QLE DNA False 2016-11-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF926PMG 6362678 ENCODE Processing Pipeline 00f61c261bb370338c498caa0b167c0f https://www.encodeproject.org/files/ENCFF113ZZY/@@download/ENCFF113ZZY.bed.gz hg19 released mild to moderate bottlenecking ENCFF837QWL bed narrowPeak peaks ENCSR819LHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXA1-human ENCAB301QLE DNA False 2016-11-17 ENCODE 1, 2 ENCFF262CJE, ENCFF459WEJ, ENCFF506DFV, ENCFF926PMG 7014363 ENCODE Processing Pipeline 9eb17206026c620ac90dc15fe407e37f https://www.encodeproject.org/files/ENCFF837QWL/@@download/ENCFF837QWL.bed.gz hg19 released mild to moderate bottlenecking ENCFF131ZOO bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB860XUX DNA False 2016-07-28 ENCODE 1 ENCFF045NGS, ENCFF581ZJL 7152432 ENCODE Processing Pipeline 022b59d0cfcc0164573c320d5b12e414 https://www.encodeproject.org/files/ENCFF131ZOO/@@download/ENCFF131ZOO.bed.gz hg19 released low read depth missing control alignments ENCFF716AIG bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB860XUX DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF349GIB 7115295 ENCODE Processing Pipeline e9e72796ae9f43e88c1043dfb722ab1f https://www.encodeproject.org/files/ENCFF716AIG/@@download/ENCFF716AIG.bed.gz hg19 released low read depth missing control alignments ENCFF877PNB bed narrowPeak peaks ENCSR099NCH ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB860XUX DNA False 2016-07-28 ENCODE 1, 2 ENCFF045NGS, ENCFF051LWI, ENCFF349GIB, ENCFF581ZJL 7258123 ENCODE Processing Pipeline 3b3b1152258dd1fb93fc01cea2dc3b3f https://www.encodeproject.org/files/ENCFF877PNB/@@download/ENCFF877PNB.bed.gz hg19 released low read depth missing control alignments ENCFF333QJD bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB348OYH DNA False 2018-01-26 ENCODE 3 ENCFF558XCY, ENCFF581ZJL 6318915 ENCODE Processing Pipeline eec9c719204fd3e601f578290d7056c6 https://www.encodeproject.org/files/ENCFF333QJD/@@download/ENCFF333QJD.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF968TKP bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB348OYH DNA False 2018-01-26 ENCODE 3, 4 ENCFF051LWI, ENCFF558XCY, ENCFF581ZJL, ENCFF675CIQ 7071021 ENCODE Processing Pipeline 5437699270e023892b30040df7b557f5 https://www.encodeproject.org/files/ENCFF968TKP/@@download/ENCFF968TKP.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF286UPH bed narrowPeak peaks ENCSR669NFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB348OYH DNA False 2018-01-26 ENCODE 4 ENCFF051LWI, ENCFF675CIQ 6143999 ENCODE Processing Pipeline 527dc753875f936b889ff1aad39f7d1c https://www.encodeproject.org/files/ENCFF286UPH/@@download/ENCFF286UPH.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF001VRJ bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 265852 Kevin White, UChicago 5f54a00f490be9bd92213e0295408d81 https://www.encodeproject.org/files/ENCFF001VRJ/@@download/ENCFF001VRJ.bed.gz hg19 archived low read depth, missing genetic modification characterization, low read length missing derived_from insufficient replicate concordance ENCFF835SWC bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ 6392683 ENCODE Processing Pipeline 948b5e041781adbef373741551e875b4 https://www.encodeproject.org/files/ENCFF835SWC/@@download/ENCFF835SWC.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF547GIJ bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF138FPL, ENCFF647LGE, ENCFF721IXJ, ENCFF788FFM 6842772 ENCODE Processing Pipeline 5c86883bebbe6179bba9231e24255344 https://www.encodeproject.org/files/ENCFF547GIJ/@@download/ENCFF547GIJ.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF011ZRR bed narrowPeak peaks ENCSR000DJZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HDAC8-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 2 ENCFF138FPL, ENCFF647LGE, ENCFF788FFM 4681633 ENCODE Processing Pipeline a4f8c8552ac239cf18baaac502d0326c https://www.encodeproject.org/files/ENCFF011ZRR/@@download/ENCFF011ZRR.bed.gz hg19 released low read depth, missing genetic modification characterization, low read length insufficient replicate concordance ENCFF629MDH bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human ENCAB558VPN DNA False 2018-01-31 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 6426362 ENCODE Processing Pipeline cfa47a78182eda62eb4386595cf76634 https://www.encodeproject.org/files/ENCFF629MDH/@@download/ENCFF629MDH.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF349MUN bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human ENCAB558VPN DNA False 2018-01-31 ENCODE 1, 2 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV, ENCFF758OOR 7144928 ENCODE Processing Pipeline a321c4dd077ae6c5eae5228f41e848b9 https://www.encodeproject.org/files/ENCFF349MUN/@@download/ENCFF349MUN.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF466JSP bed narrowPeak peaks ENCSR574XEO ChIP-seq EFO:0002067 K562 cell line Homo sapiens NUFIP1-human ENCAB558VPN DNA False 2018-01-31 ENCODE 1 ENCFF102RWP, ENCFF262CJE, ENCFF506DFV 6434268 ENCODE Processing Pipeline 23f55f2073dafeb259497b0593e8c0ec https://www.encodeproject.org/files/ENCFF466JSP/@@download/ENCFF466JSP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF717LPP bed narrowPeak peaks ENCSR030OKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens DROSHA-human ENCAB953TNR DNA SDS formaldehyde False 2016-10-31 ENCODE 1, 2 ENCFF177GKX, ENCFF435MFF, ENCFF643FQM, ENCFF993VCM 6500240 ENCODE Processing Pipeline 799c63de5103084b0dcc2eaf038ca545 https://www.encodeproject.org/files/ENCFF717LPP/@@download/ENCFF717LPP.bed.gz hg19 archived borderline replicate concordance, low read length insufficient read depth ENCFF154OXO bed narrowPeak peaks ENCSR030OKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens DROSHA-human ENCAB953TNR DNA SDS formaldehyde False 2016-10-31 ENCODE 1 ENCFF177GKX, ENCFF435MFF 4379244 ENCODE Processing Pipeline d7cfe7aef02f66eff3fb9963dc498f08 https://www.encodeproject.org/files/ENCFF154OXO/@@download/ENCFF154OXO.bed.gz hg19 archived borderline replicate concordance, low read length insufficient read depth ENCFF854MYR bed narrowPeak peaks ENCSR030OKC ChIP-seq EFO:0002067 K562 cell line Homo sapiens DROSHA-human ENCAB953TNR DNA SDS formaldehyde False 2016-10-31 ENCODE 2 ENCFF643FQM, ENCFF993VCM 4537557 ENCODE Processing Pipeline 1e2a4cacc1678a09807e7bd6b4304764 https://www.encodeproject.org/files/ENCFF854MYR/@@download/ENCFF854MYR.bed.gz hg19 archived borderline replicate concordance, low read length insufficient read depth ENCFF263GIU bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB969PZN DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF203FSJ 6683557 ENCODE Processing Pipeline 34dbe85b30546fabcbdbabec5003e12f https://www.encodeproject.org/files/ENCFF263GIU/@@download/ENCFF263GIU.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF350ETZ bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB969PZN DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF696YRO, ENCFF834TUP 7122842 ENCODE Processing Pipeline bbcecdde973b7e316a2696ae58a04710 https://www.encodeproject.org/files/ENCFF350ETZ/@@download/ENCFF350ETZ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF551KDQ bed narrowPeak peaks ENCSR851XLW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB969PZN DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF203FSJ, ENCFF696YRO, ENCFF834TUP 7195368 ENCODE Processing Pipeline ca8fb63b6d9af0ecc85e855de3ed9368 https://www.encodeproject.org/files/ENCFF551KDQ/@@download/ENCFF551KDQ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF001VMQ bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 46587 Sherman Weissman, Yale 4e22d0d1055653b9d9d5d0df8b4aa04d https://www.encodeproject.org/files/ENCFF001VMQ/@@download/ENCFF001VMQ.bed.gz hg19 archived control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF517GFP bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF929JOF 3101096 ENCODE Processing Pipeline e2be7bd7967e11d555813e58abd60384 https://www.encodeproject.org/files/ENCFF517GFP/@@download/ENCFF517GFP.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF761YWV bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF504AWB, ENCFF650MOB, ENCFF929JOF 4870351 ENCODE Processing Pipeline c10e60e9a670d181856d800248875a13 https://www.encodeproject.org/files/ENCFF761YWV/@@download/ENCFF761YWV.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF726YHM bed narrowPeak peaks ENCSR000FAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 2 ENCFF504AWB, ENCFF650MOB 3041994 ENCODE Processing Pipeline 1a28c8a592152dca965a48085b9c329b https://www.encodeproject.org/files/ENCFF726YHM/@@download/ENCFF726YHM.bed.gz hg19 released control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF363AAC bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human ENCAB438BKV DNA False 2017-05-17 ENCODE 1, 2 ENCFF155TVA, ENCFF160VXC, ENCFF411OFR, ENCFF834TUP 7321973 ENCODE Processing Pipeline 261290cb05031626787a10c961837e83 https://www.encodeproject.org/files/ENCFF363AAC/@@download/ENCFF363AAC.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF537WLH bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human ENCAB438BKV DNA False 2017-05-17 ENCODE 2 ENCFF411OFR, ENCFF834TUP 7140162 ENCODE Processing Pipeline 7beca13c72ab6a9518c4c80fa839c534 https://www.encodeproject.org/files/ENCFF537WLH/@@download/ENCFF537WLH.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF322TVZ bed narrowPeak peaks ENCSR249BHQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF592-human ENCAB438BKV DNA False 2017-05-17 ENCODE 1 ENCFF155TVA, ENCFF160VXC 7093766 ENCODE Processing Pipeline ab63538dc764ed73d698c6004ed4af4a https://www.encodeproject.org/files/ENCFF322TVZ/@@download/ENCFF322TVZ.bed.gz hg19 released mild to moderate bottlenecking, antibody characterized with exemption missing control alignments ENCFF848FSH bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB608UKB DNA False 2016-12-19 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF921BVG, ENCFF948XRU 7260496 ENCODE Processing Pipeline 6ed6bde5b6fce4621dd2e4bb9a8bc089 https://www.encodeproject.org/files/ENCFF848FSH/@@download/ENCFF848FSH.bed.gz hg19 released missing control alignments ENCFF829KFC bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB608UKB DNA False 2016-12-19 ENCODE 2 ENCFF051LWI, ENCFF921BVG 6680008 ENCODE Processing Pipeline 9916a25b6b7c1363fbfb629df670f9c3 https://www.encodeproject.org/files/ENCFF829KFC/@@download/ENCFF829KFC.bed.gz hg19 released missing control alignments ENCFF505URD bed narrowPeak peaks ENCSR613NUC ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARNT-human ENCAB608UKB DNA False 2016-12-19 ENCODE 1 ENCFF581ZJL, ENCFF948XRU 7107880 ENCODE Processing Pipeline daaf9e7a697b0d64edcb01c4a0f21f2a https://www.encodeproject.org/files/ENCFF505URD/@@download/ENCFF505URD.bed.gz hg19 released missing control alignments ENCFF253PLF bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human ENCAB000BCN DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF950LGW 6719475 ENCODE Processing Pipeline f3894190ca5645019fbfae164354c932 https://www.encodeproject.org/files/ENCFF253PLF/@@download/ENCFF253PLF.bed.gz hg19 released borderline replicate concordance ENCFF387NDE bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human ENCAB000BCN DNA False 2017-05-17 ENCODE 1 ENCFF412LRS, ENCFF581ZJL 6967086 ENCODE Processing Pipeline 36aa5a16f94265a8106622b095f3da35 https://www.encodeproject.org/files/ENCFF387NDE/@@download/ENCFF387NDE.bed.gz hg19 released borderline replicate concordance ENCFF658ZHZ bed narrowPeak peaks ENCSR807BGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA1-human ENCAB000BCN DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF412LRS, ENCFF581ZJL, ENCFF950LGW 7251771 ENCODE Processing Pipeline c420bf9bfec2cbbaec23f1b7ad1dc794 https://www.encodeproject.org/files/ENCFF658ZHZ/@@download/ENCFF658ZHZ.bed.gz hg19 released borderline replicate concordance ENCFF084ILX bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB600VSM DNA False 2016-06-14 ENCODE 1 ENCFF063DLZ, ENCFF581ZJL 6667597 ENCODE Processing Pipeline 360bae6f96a56e295c8cf96a5d962f32 https://www.encodeproject.org/files/ENCFF084ILX/@@download/ENCFF084ILX.bed.gz hg19 released ENCFF850ENR bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB600VSM DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF539VZJ 6735588 ENCODE Processing Pipeline f1a7d7acf30f8769e3ec52429b8541d6 https://www.encodeproject.org/files/ENCFF850ENR/@@download/ENCFF850ENR.bed.gz hg19 released ENCFF605LJE bed narrowPeak peaks ENCSR411UYA ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB600VSM DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF063DLZ, ENCFF539VZJ, ENCFF581ZJL 7237606 ENCODE Processing Pipeline 86a80d8937e56eb9206edddc2230c24d https://www.encodeproject.org/files/ENCFF605LJE/@@download/ENCFF605LJE.bed.gz hg19 released ENCFF885YBC bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human ENCAB565MLN DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF940TNY 6671120 ENCODE Processing Pipeline 3c9b0642721801fa34d7567481bd8f30 https://www.encodeproject.org/files/ENCFF885YBC/@@download/ENCFF885YBC.bed.gz hg19 released ENCFF854ZPL bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human ENCAB565MLN DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE, ENCFF940TNY 7100970 ENCODE Processing Pipeline 502e4dd73f054e4daa26f7f69992c9de https://www.encodeproject.org/files/ENCFF854ZPL/@@download/ENCFF854ZPL.bed.gz hg19 released ENCFF120JHT bed narrowPeak peaks ENCSR697YLJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T3-human ENCAB565MLN DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF758IAE 6850036 ENCODE Processing Pipeline d4b532087801b4bfd18ba5a256b119ae https://www.encodeproject.org/files/ENCFF120JHT/@@download/ENCFF120JHT.bed.gz hg19 released ENCFF576BTO bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human ENCAB655PST DNA False 2017-09-28 ENCODE 1 ENCFF359SWY, ENCFF581ZJL 6637717 ENCODE Processing Pipeline 6588a2d0a029d0bb80a0e2cd4a096786 https://www.encodeproject.org/files/ENCFF576BTO/@@download/ENCFF576BTO.bed.gz hg19 released antibody characterized with exemption ENCFF828CXZ bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human ENCAB655PST DNA False 2017-09-28 ENCODE 2 ENCFF051LWI, ENCFF669LOS 6607514 ENCODE Processing Pipeline ffcb3b639ed32f8755e3898c3bbebd6f https://www.encodeproject.org/files/ENCFF828CXZ/@@download/ENCFF828CXZ.bed.gz hg19 released antibody characterized with exemption ENCFF989TPD bed narrowPeak peaks ENCSR491EBY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID2-human ENCAB655PST DNA False 2017-09-28 ENCODE 1, 2 ENCFF051LWI, ENCFF359SWY, ENCFF581ZJL, ENCFF669LOS 7243359 ENCODE Processing Pipeline 0f531ff32e31e785da4579746adb3a97 https://www.encodeproject.org/files/ENCFF989TPD/@@download/ENCFF989TPD.bed.gz hg19 released antibody characterized with exemption ENCFF844TQX bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BRJ DNA False 2016-03-30 ENCODE 1 ENCFF107VJA, ENCFF444TNY 6439920 ENCODE Processing Pipeline 282e4782f8494d85976bcf5d26aef0a7 https://www.encodeproject.org/files/ENCFF844TQX/@@download/ENCFF844TQX.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF820ZTK bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BRJ DNA False 2016-03-30 ENCODE 2 ENCFF082GBO, ENCFF708IYO 5560359 ENCODE Processing Pipeline f8f01706849c4eee56860e0693bd4143 https://www.encodeproject.org/files/ENCFF820ZTK/@@download/ENCFF820ZTK.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF576LFG bed narrowPeak peaks ENCSR076YPO ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BRJ DNA False 2016-03-30 ENCODE 1, 2 ENCFF082GBO, ENCFF107VJA, ENCFF444TNY, ENCFF708IYO 6999284 ENCODE Processing Pipeline 24ec94b58a385ffd60d08cb75a51c5b3 https://www.encodeproject.org/files/ENCFF576LFG/@@download/ENCFF576LFG.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF689EEG bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BIM DNA False 2016-03-31 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF391CGQ, ENCFF892CVA 6921393 ENCODE Processing Pipeline 852de3d3ed7602a4512d2f72f290398e https://www.encodeproject.org/files/ENCFF689EEG/@@download/ENCFF689EEG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF011EFB bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BIM DNA False 2016-03-31 ENCODE 1 ENCFF023YMB, ENCFF391CGQ 5422867 ENCODE Processing Pipeline 3bcd5f121b6f622b8ea4fb2fa089e04d https://www.encodeproject.org/files/ENCFF011EFB/@@download/ENCFF011EFB.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF206UIN bed narrowPeak peaks ENCSR588AKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens RUNX1-human ENCAB000BIM DNA False 2016-03-31 ENCODE 2 ENCFF092ACZ, ENCFF892CVA 5905358 ENCODE Processing Pipeline 2b36d9bac13bba57a31bcc0042bc5d80 https://www.encodeproject.org/files/ENCFF206UIN/@@download/ENCFF206UIN.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF394QGN bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human ENCAB587QKH DNA False 2018-01-26 ENCODE 1, 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV, ENCFF817XAJ 7124209 ENCODE Processing Pipeline e54dd68212518fc5642a3447c1c01d47 https://www.encodeproject.org/files/ENCFF394QGN/@@download/ENCFF394QGN.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF443DXB bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human ENCAB587QKH DNA False 2018-01-26 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF817XAJ 6804835 ENCODE Processing Pipeline 6b8959a7b8a8c771004bde83f0b6a755 https://www.encodeproject.org/files/ENCFF443DXB/@@download/ENCFF443DXB.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF752PUJ bed narrowPeak peaks ENCSR120MPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRDM10-human ENCAB587QKH DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF331VSA, ENCFF506DFV 6735798 ENCODE Processing Pipeline a17e78b385eb53e4fe51aa779174fd22 https://www.encodeproject.org/files/ENCFF752PUJ/@@download/ENCFF752PUJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF369YHE bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF180DLN, ENCFF311MHB 5606389 ENCODE Processing Pipeline d8cddbe81473e58340ce677c25e38cc5 https://www.encodeproject.org/files/ENCFF369YHE/@@download/ENCFF369YHE.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF089QJI bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF180DLN, ENCFF290VXO 5435601 ENCODE Processing Pipeline 1b3771a11fba80bd23684e282119d03b https://www.encodeproject.org/files/ENCFF089QJI/@@download/ENCFF089QJI.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF922IFQ bed narrowPeak peaks ENCSR619GFP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-HINFP-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF180DLN, ENCFF290VXO, ENCFF311MHB 6399513 ENCODE Processing Pipeline 05e91842f81f7d1926814e2fdd3f27de https://www.encodeproject.org/files/ENCFF922IFQ/@@download/ENCFF922IFQ.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF392CTG bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF054RVU, ENCFF285NOA 6823970 ENCODE Processing Pipeline 75c3cf7db837a69224afe8ae47622624 https://www.encodeproject.org/files/ENCFF392CTG/@@download/ENCFF392CTG.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF254TMJ bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF285NOA, ENCFF306XER 6085191 ENCODE Processing Pipeline 2094ae886ce87c6e14bc9cd5117889d4 https://www.encodeproject.org/files/ENCFF254TMJ/@@download/ENCFF254TMJ.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF609KYL bed narrowPeak peaks ENCSR257XVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF83-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF054RVU, ENCFF285NOA, ENCFF306XER 7111238 ENCODE Processing Pipeline 6b367b80b7e5ad6ca9d8bab9b15f37a9 https://www.encodeproject.org/files/ENCFF609KYL/@@download/ENCFF609KYL.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF519QDT bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB733KID DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF264WWV, ENCFF581ZJL, ENCFF780RFE 6911391 ENCODE Processing Pipeline 415635e07e7485975e6d987bd77b6789 https://www.encodeproject.org/files/ENCFF519QDT/@@download/ENCFF519QDT.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF002NNQ bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB733KID DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF780RFE 5669054 ENCODE Processing Pipeline f6cd593476efa8c5c75daf455dae72c3 https://www.encodeproject.org/files/ENCFF002NNQ/@@download/ENCFF002NNQ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF039VDD bed narrowPeak peaks ENCSR792IYC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BCLAF1-human ENCAB733KID DNA False 2018-01-26 ENCODE 1 ENCFF264WWV, ENCFF581ZJL 5728057 ENCODE Processing Pipeline 0cca0ee2088dd951e375f9451e72b208 https://www.encodeproject.org/files/ENCFF039VDD/@@download/ENCFF039VDD.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF710KKZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB851KCY DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF768VEY 6525420 ENCODE Processing Pipeline 8101449533063d4491dcd437c4d4400e https://www.encodeproject.org/files/ENCFF710KKZ/@@download/ENCFF710KKZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF218RJK bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB851KCY DNA False 2016-07-08 ENCODE 1 ENCFF483UIU, ENCFF581ZJL 6233227 ENCODE Processing Pipeline 90c9ab711eba70a009b0589ea7057131 https://www.encodeproject.org/files/ENCFF218RJK/@@download/ENCFF218RJK.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF159RHZ bed narrowPeak peaks ENCSR563LLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F1-human ENCAB851KCY DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF483UIU, ENCFF581ZJL, ENCFF768VEY 7148672 ENCODE Processing Pipeline 54ce759192f750f3ffc29b6826cdc475 https://www.encodeproject.org/files/ENCFF159RHZ/@@download/ENCFF159RHZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF372LVB bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human ENCAB442DTV DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF619ONV 5996883 ENCODE Processing Pipeline 8fb7495ff05c9be22573c84ca5d99b42 https://www.encodeproject.org/files/ENCFF372LVB/@@download/ENCFF372LVB.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF733BCO bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human ENCAB442DTV DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF364FHT 6433432 ENCODE Processing Pipeline df054e85b6b3638edd1c38698fa4235c https://www.encodeproject.org/files/ENCFF733BCO/@@download/ENCFF733BCO.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF971BFZ bed narrowPeak peaks ENCSR154EIH ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIP13-human ENCAB442DTV DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF364FHT, ENCFF581ZJL, ENCFF619ONV 7099199 ENCODE Processing Pipeline 0ea44abf1b4e5b091b6f8aaa98ea9e76 https://www.encodeproject.org/files/ENCFF971BFZ/@@download/ENCFF971BFZ.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF121MTK bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB466YMY DNA False 2017-07-28 ENCODE 1 ENCFF430WVD, ENCFF581ZJL 6704094 ENCODE Processing Pipeline 20566f46bdabc2b040fa2bb4ccdc8a32 https://www.encodeproject.org/files/ENCFF121MTK/@@download/ENCFF121MTK.bed.gz hg19 released ENCFF580OVF bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB466YMY DNA False 2017-07-28 ENCODE 2 ENCFF051LWI, ENCFF544MAP 6894292 ENCODE Processing Pipeline 552f2bab6068ab3d0513b6720c1669de https://www.encodeproject.org/files/ENCFF580OVF/@@download/ENCFF580OVF.bed.gz hg19 released ENCFF722GTZ bed narrowPeak peaks ENCSR546IHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF184-human ENCAB466YMY DNA False 2017-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF430WVD, ENCFF544MAP, ENCFF581ZJL 7262910 ENCODE Processing Pipeline 80de46980f3e670effa4b260d025e0e8 https://www.encodeproject.org/files/ENCFF722GTZ/@@download/ENCFF722GTZ.bed.gz hg19 released ENCFF713DFK bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human ENCAB944PGR DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF924KFO 6995781 ENCODE Processing Pipeline 7ac0da1320eb4d89fc2a472ee1b731e8 https://www.encodeproject.org/files/ENCFF713DFK/@@download/ENCFF713DFK.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO, out of date analysis partially characterized antibody missing control alignments ENCFF249GYD bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human ENCAB944PGR DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF085VSJ 6794677 ENCODE Processing Pipeline 399ad20964e01340f9aea8e025cbfd10 https://www.encodeproject.org/files/ENCFF249GYD/@@download/ENCFF249GYD.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO, out of date analysis partially characterized antibody missing control alignments ENCFF952KDF bed narrowPeak peaks ENCSR731LHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens E4F1-human ENCAB944PGR DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF085VSJ, ENCFF581ZJL, ENCFF924KFO 7143137 ENCODE Processing Pipeline c36b19d1edcddcc25701ff1cb7c9c709 https://www.encodeproject.org/files/ENCFF952KDF/@@download/ENCFF952KDF.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO, out of date analysis partially characterized antibody missing control alignments ENCFF001VOE bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 194293 Sherman Weissman, Yale 12aaf5f1a39afac91f5ca2aba90eb3dd https://www.encodeproject.org/files/ENCFF001VOE/@@download/ENCFF001VOE.bed.gz hg19 archived mixed read lengths, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF195EME bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF278NAG, ENCFF998GMZ 4582388 ENCODE Processing Pipeline 2f94b0529ae9ecc665a2ddfb4eaa134b https://www.encodeproject.org/files/ENCFF195EME/@@download/ENCFF195EME.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF196LRG bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF788CTS, ENCFF998GMZ 5084258 ENCODE Processing Pipeline 938c4d948378101e300b807bce985979 https://www.encodeproject.org/files/ENCFF196LRG/@@download/ENCFF196LRG.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF274EWP bed narrowPeak peaks ENCSR000FAX ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF278NAG, ENCFF788CTS, ENCFF998GMZ 5988657 ENCODE Processing Pipeline 1135ed2b1bb71be45b98986e3e1bd661 https://www.encodeproject.org/files/ENCFF274EWP/@@download/ENCFF274EWP.bed.gz hg19 released mixed read lengths, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001VPH bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human ENCAB000AMH DNA see document see document False 2011-10-29 ENCODE 183098 Michael Snyder, Stanford ffaffe9000db54e46d06658318118df8 https://www.encodeproject.org/files/ENCFF001VPH/@@download/ENCFF001VPH.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF129CHM bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human ENCAB000AMH DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF710NTS, ENCFF842LBP, ENCFF851ZZA 4868544 ENCODE Processing Pipeline 4e09e34754c699b6f4d5d0aa576ca27c https://www.encodeproject.org/files/ENCFF129CHM/@@download/ENCFF129CHM.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF935ZZG bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human ENCAB000AMH DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF851ZZA 4131199 ENCODE Processing Pipeline 6fc0d16772ba997c26d354f701fbefce https://www.encodeproject.org/files/ENCFF935ZZG/@@download/ENCFF935ZZG.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF505EIB bed narrowPeak peaks ENCSR000EHG ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF2-human ENCAB000AMH DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF842LBP 4219487 ENCODE Processing Pipeline de5e49bbd51ef4840243072ad43be632 https://www.encodeproject.org/files/ENCFF505EIB/@@download/ENCFF505EIB.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF309SZA bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB198YAJ DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF891JGT 7176855 ENCODE Processing Pipeline 49d352536c4577a2bfc11622141afab3 https://www.encodeproject.org/files/ENCFF309SZA/@@download/ENCFF309SZA.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF720BVJ bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB198YAJ DNA False 2017-01-27 ENCODE 1 ENCFF057NCM, ENCFF581ZJL 7096882 ENCODE Processing Pipeline 5642da1c0113cedbfd494e26d8fe70cc https://www.encodeproject.org/files/ENCFF720BVJ/@@download/ENCFF720BVJ.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF924XOY bed narrowPeak peaks ENCSR695EQB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF24-human ENCAB198YAJ DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF057NCM, ENCFF581ZJL, ENCFF891JGT 7301964 ENCODE Processing Pipeline 58942973d3f4e298ec657e05dafe9706 https://www.encodeproject.org/files/ENCFF924XOY/@@download/ENCFF924XOY.bed.gz hg19 released antibody characterized with exemption missing control alignments ENCFF113AKA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human ENCAB567JVG DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF185TBI 6495886 ENCODE Processing Pipeline 7494f70453ea5f93629feef228a66aed https://www.encodeproject.org/files/ENCFF113AKA/@@download/ENCFF113AKA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF565ONA bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human ENCAB567JVG DNA False 2018-01-26 ENCODE 1 ENCFF376JWD, ENCFF581ZJL 6489843 ENCODE Processing Pipeline 37411dc101264ed436539b6d7e933bd5 https://www.encodeproject.org/files/ENCFF565ONA/@@download/ENCFF565ONA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF287JMK bed narrowPeak peaks ENCSR571BUF ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARHGAP35-human ENCAB567JVG DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF185TBI, ENCFF376JWD, ENCFF581ZJL 7170533 ENCODE Processing Pipeline da87553a0506efb3dbf344c8ab771324 https://www.encodeproject.org/files/ENCFF287JMK/@@download/ENCFF287JMK.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF609LOZ bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB097MPS DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP 5522784 ENCODE Processing Pipeline 90f8e7d8022f73e44109afeff47bf187 https://www.encodeproject.org/files/ENCFF609LOZ/@@download/ENCFF609LOZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF028TZK bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB097MPS DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF413LCN, ENCFF466LEC, ENCFF913GCP, ENCFF984PYA 6537634 ENCODE Processing Pipeline 93dc2328c6392cb99f4502781d628657 https://www.encodeproject.org/files/ENCFF028TZK/@@download/ENCFF028TZK.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF882WGE bed narrowPeak peaks ENCSR415TXN ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB097MPS DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF413LCN, ENCFF466LEC, ENCFF984PYA 5668214 ENCODE Processing Pipeline bb6cceac098c9c18a285ddaac2ab0c6c https://www.encodeproject.org/files/ENCFF882WGE/@@download/ENCFF882WGE.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF001ULV bed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AMB DNA see document see document False 2012-09-10 ENCODE 1 1 260642 Richard Myers, HAIB 0a69b06cf10e71e76523e2eb49d10009 https://www.encodeproject.org/files/ENCFF001ULV/@@download/ENCFF001ULV.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from, out of date analysis, inconsistent mapped reads lengths insufficient read depth ENCFF001ULW bed broadPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AMB DNA see document see document False 2012-09-10 ENCODE 2 1 75553 Richard Myers, HAIB 93e116c0c7bd0deacafd7d88bfcd5f9a https://www.encodeproject.org/files/ENCFF001ULW/@@download/ENCFF001ULW.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from, out of date analysis, inconsistent mapped reads lengths insufficient read depth ENCFF140YDA bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AMB DNA see document see document False 2012-09-10 ENCODE 1 ENCFF275STF, ENCFF522HDC 6352142 ENCODE Processing Pipeline 8b9ed27f9e33de801da5affaeec39691 https://www.encodeproject.org/files/ENCFF140YDA/@@download/ENCFF140YDA.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, out of date analysis, inconsistent mapped reads lengths insufficient read depth ENCFF721WZY bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AMB DNA see document see document False 2012-09-10 ENCODE 1, 2 ENCFF275STF, ENCFF468ZDX, ENCFF482NNF, ENCFF522HDC 6846560 ENCODE Processing Pipeline e66f5d29cd95a43e2d6f62e5a3bafe37 https://www.encodeproject.org/files/ENCFF721WZY/@@download/ENCFF721WZY.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, out of date analysis, inconsistent mapped reads lengths insufficient read depth ENCFF700BWV bed narrowPeak peaks ENCSR000BRW ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AMB DNA see document see document False 2012-09-10 ENCODE 2 ENCFF468ZDX, ENCFF482NNF 3992676 ENCODE Processing Pipeline 9d32157d894fd70a374755130566ef07 https://www.encodeproject.org/files/ENCFF700BWV/@@download/ENCFF700BWV.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, out of date analysis, inconsistent mapped reads lengths insufficient read depth ENCFF814OZQ bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human ENCAB143NDO DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF607MTM, ENCFF834TUP 6965642 ENCODE Processing Pipeline 0718b01612a32df7f0c0beace60bd8e5 https://www.encodeproject.org/files/ENCFF814OZQ/@@download/ENCFF814OZQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF020AOB bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human ENCAB143NDO DNA False 2018-01-26 ENCODE 2 ENCFF548ORK, ENCFF834TUP 6509636 ENCODE Processing Pipeline f17aecc21850d6d815c28196a603ebca https://www.encodeproject.org/files/ENCFF020AOB/@@download/ENCFF020AOB.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF400SXR bed narrowPeak peaks ENCSR283ZNI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB8A-human ENCAB143NDO DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF548ORK, ENCFF607MTM, ENCFF834TUP 7234307 ENCODE Processing Pipeline e6c978613342a8dfe04425ba52b872a3 https://www.encodeproject.org/files/ENCFF400SXR/@@download/ENCFF400SXR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF361PJU bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human ENCAB000BHV DNA False 2016-04-01 ENCODE 2 ENCFF023YMB, ENCFF272HDX 6155141 ENCODE Processing Pipeline 1ca260b3cf83a5a8f400fcef7aed5994 https://www.encodeproject.org/files/ENCFF361PJU/@@download/ENCFF361PJU.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF643XPE bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human ENCAB000BHV DNA False 2016-04-01 ENCODE 1, 2 ENCFF023YMB, ENCFF092ACZ, ENCFF272HDX, ENCFF487NQY 6874904 ENCODE Processing Pipeline b1cffbbf30f9768d1626b9eb63505d1d https://www.encodeproject.org/files/ENCFF643XPE/@@download/ENCFF643XPE.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF004MPD bed narrowPeak peaks ENCSR737LTZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYNN-human ENCAB000BHV DNA False 2016-04-01 ENCODE 1 ENCFF092ACZ, ENCFF487NQY 5580912 ENCODE Processing Pipeline 4fae6b6b7a4a86df07b748b45c5ba3e8 https://www.encodeproject.org/files/ENCFF004MPD/@@download/ENCFF004MPD.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF261OOY bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB680SMX DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF880NAD 6789096 ENCODE Processing Pipeline e743490d7df20591f455f87097e4306e https://www.encodeproject.org/files/ENCFF261OOY/@@download/ENCFF261OOY.bed.gz hg19 released low read depth ENCFF303OST bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB680SMX DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF222XNY 6744989 ENCODE Processing Pipeline cdfc6e5c799192f140ca4b3d9f0347cc https://www.encodeproject.org/files/ENCFF303OST/@@download/ENCFF303OST.bed.gz hg19 released low read depth ENCFF121KKJ bed narrowPeak peaks ENCSR957LDM ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM24-human ENCAB680SMX DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF222XNY, ENCFF581ZJL, ENCFF880NAD 7245731 ENCODE Processing Pipeline e7a3c665f0be890bf5ebbc1b4c449bcb https://www.encodeproject.org/files/ENCFF121KKJ/@@download/ENCFF121KKJ.bed.gz hg19 released low read depth ENCFF476KBA bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human ENCAB000BNW DNA False 2017-06-29 ENCODE 3 ENCFF464SZU, ENCFF581ZJL 6555255 ENCODE Processing Pipeline 701e52355b8054f5691ffa5db71126dc https://www.encodeproject.org/files/ENCFF476KBA/@@download/ENCFF476KBA.bed.gz hg19 released mild to moderate bottlenecking ENCFF501IBL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human ENCAB000BNW DNA False 2017-06-29 ENCODE 2 ENCFF010OCL, ENCFF051LWI 7042297 ENCODE Processing Pipeline 36a535e24307ab7e0d632800d161ebbd https://www.encodeproject.org/files/ENCFF501IBL/@@download/ENCFF501IBL.bed.gz hg19 released mild to moderate bottlenecking ENCFF264IPL bed narrowPeak peaks ENCSR336DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens SKIL-human ENCAB000BNW DNA False 2017-06-29 ENCODE 2, 3 ENCFF010OCL, ENCFF051LWI, ENCFF464SZU, ENCFF581ZJL 7296916 ENCODE Processing Pipeline 8f5a77b268dd5216f4a26bf3b158fa22 https://www.encodeproject.org/files/ENCFF264IPL/@@download/ENCFF264IPL.bed.gz hg19 released mild to moderate bottlenecking ENCFF324WHA bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB872ODR DNA False 2017-09-29 ENCODE 2 ENCFF051LWI, ENCFF871PMM 6577461 ENCODE Processing Pipeline 383eeeeeb7dac3f197aa9d7d9a110d35 https://www.encodeproject.org/files/ENCFF324WHA/@@download/ENCFF324WHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF620EBO bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB872ODR DNA False 2017-09-29 ENCODE 1, 2 ENCFF051LWI, ENCFF410WSQ, ENCFF581ZJL, ENCFF871PMM 7219988 ENCODE Processing Pipeline fa21fbdb3f3b508c7eb867947084a66c https://www.encodeproject.org/files/ENCFF620EBO/@@download/ENCFF620EBO.bed.gz hg19 released mild to moderate bottlenecking ENCFF951XWI bed narrowPeak peaks ENCSR670FDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFATC3-human ENCAB872ODR DNA False 2017-09-29 ENCODE 1 ENCFF410WSQ, ENCFF581ZJL 6612725 ENCODE Processing Pipeline 3524fdf624f98312e8d8eddba86a108e https://www.encodeproject.org/files/ENCFF951XWI/@@download/ENCFF951XWI.bed.gz hg19 released mild to moderate bottlenecking ENCFF813HVG bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human ENCAB000AUE DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF061QOJ, ENCFF103CZU, ENCFF578ISP, ENCFF727QOD 6490731 ENCODE Processing Pipeline 45b800c16bc87fd82dee37aacac4f078 https://www.encodeproject.org/files/ENCFF813HVG/@@download/ENCFF813HVG.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF803FZY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human ENCAB000AUE DNA see document see document False 2014-07-07 ENCODE 1 ENCFF103CZU, ENCFF578ISP 5583357 ENCODE Processing Pipeline b465b7c2b84f5f8fb8b676d502b35b66 https://www.encodeproject.org/files/ENCFF803FZY/@@download/ENCFF803FZY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF552ZAY bed narrowPeak peaks ENCSR000FCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human ENCAB000AUE DNA see document see document False 2014-07-07 ENCODE 2 ENCFF061QOJ, ENCFF727QOD 5439753 ENCODE Processing Pipeline cd17067a85d52f2050be5d06ce0f6a33 https://www.encodeproject.org/files/ENCFF552ZAY/@@download/ENCFF552ZAY.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF739IDN bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4064192 ENCODE Processing Pipeline 10bc6a66f3210269046f7ffe893d1b3b https://www.encodeproject.org/files/ENCFF739IDN/@@download/ENCFF739IDN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF397JDZ bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4084696 ENCODE Processing Pipeline 7bc6cca12ce76a4feb5c4840ecc95620 https://www.encodeproject.org/files/ENCFF397JDZ/@@download/ENCFF397JDZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF382SAW bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 5404432 ENCODE Processing Pipeline 7f4fc156441552ab0a9f437307117ad5 https://www.encodeproject.org/files/ENCFF382SAW/@@download/ENCFF382SAW.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF181NNV bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 1, 2 ENCFF150PLO, ENCFF335IPE, ENCFF660MJY, ENCFF879OQC 5633586 ENCODE Processing Pipeline bf9643e4324ed066be22a990eb61e8f0 https://www.encodeproject.org/files/ENCFF181NNV/@@download/ENCFF181NNV.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF688TJX bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF660MJY 4209685 ENCODE Processing Pipeline 99e76d8e305893efffbd5686a4d47778 https://www.encodeproject.org/files/ENCFF688TJX/@@download/ENCFF688TJX.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF292NAI bed narrowPeak peaks ENCSR189PYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD2-human ENCAB976BHH DNA False 2014-07-07 ENCODE 2 ENCFF150PLO, ENCFF879OQC 4277069 ENCODE Processing Pipeline 3e2b5051cc3a350a4bd7cd2457d15ab5 https://www.encodeproject.org/files/ENCFF292NAI/@@download/ENCFF292NAI.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length ENCFF699WES bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6803821 ENCODE Processing Pipeline 30f8a9e2d5f84d79f7c8112a89120a22 https://www.encodeproject.org/files/ENCFF699WES/@@download/ENCFF699WES.bed.gz hg19 archived low read depth, mild to moderate bottlenecking ENCFF459WKK bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 7190556 ENCODE Processing Pipeline 7c3e23942b93b36f294f4ea77bdfe10c https://www.encodeproject.org/files/ENCFF459WKK/@@download/ENCFF459WKK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking ENCFF422VXS bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6568266 ENCODE Processing Pipeline ec5244eb4f12cadf3aca61e411e7ab61 https://www.encodeproject.org/files/ENCFF422VXS/@@download/ENCFF422VXS.bed.gz hg19 archived low read depth, mild to moderate bottlenecking ENCFF269OJD bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 1 ENCFF545HSY, ENCFF581ZJL 6428918 ENCODE Processing Pipeline acb90b1069557278322f26bf973da922 https://www.encodeproject.org/files/ENCFF269OJD/@@download/ENCFF269OJD.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF778OYJ bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541UXW 6686411 ENCODE Processing Pipeline 1cf0b24d5c55b03395a83d20ba7bab99 https://www.encodeproject.org/files/ENCFF778OYJ/@@download/ENCFF778OYJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF103ESU bed narrowPeak peaks ENCSR991ELG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SP1-human ENCAB000BAV DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541UXW, ENCFF545HSY, ENCFF581ZJL 7172917 ENCODE Processing Pipeline 5c6dda9141a5d8ac25544ebeb1f7c987 https://www.encodeproject.org/files/ENCFF103ESU/@@download/ENCFF103ESU.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF001VMO bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human ENCAB000AER DNA see document see document False 2012-08-20 ENCODE 350531 Michael Snyder, Stanford e66b2414940814db9b3349c7870d8629 https://www.encodeproject.org/files/ENCFF001VMO/@@download/ENCFF001VMO.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from insufficient read depth missing control alignments ENCFF422SBX bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human ENCAB000AER DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF703KIU, ENCFF710NTS, ENCFF738IAS 5558042 ENCODE Processing Pipeline 49411d81e4a5c39155fc0169c59744dc https://www.encodeproject.org/files/ENCFF422SBX/@@download/ENCFF422SBX.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth missing control alignments ENCFF596KVH bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human ENCAB000AER DNA see document see document False 2012-08-20 ENCODE 1 ENCFF703KIU, ENCFF710NTS 4250099 ENCODE Processing Pipeline 25bcfe841e4379e12213ec46fd0af751 https://www.encodeproject.org/files/ENCFF596KVH/@@download/ENCFF596KVH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth missing control alignments ENCFF182AWR bed narrowPeak peaks ENCSR000EFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human ENCAB000AER DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF738IAS 5260689 ENCODE Processing Pipeline 0d7bb4ba36aaaddc656d121e2b42a299 https://www.encodeproject.org/files/ENCFF182AWR/@@download/ENCFF182AWR.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth missing control alignments ENCFF980ENB bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human ENCAB189GDE DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF431XVO, ENCFF572OMD 5998545 ENCODE Processing Pipeline a861b9c84c22d404d0e45ef934e017d2 https://www.encodeproject.org/files/ENCFF980ENB/@@download/ENCFF980ENB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity missing control alignments ENCFF191KLS bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human ENCAB189GDE DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF648AFL 6220137 ENCODE Processing Pipeline 83bc0b2fc5f626e6c45d14ff150c1ac7 https://www.encodeproject.org/files/ENCFF191KLS/@@download/ENCFF191KLS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity missing control alignments ENCFF790CEE bed narrowPeak peaks ENCSR641BSL ChIP-seq EFO:0002067 K562 cell line Homo sapiens AGO1-human ENCAB189GDE DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF431XVO, ENCFF508DBG, ENCFF572OMD, ENCFF648AFL 7175237 ENCODE Processing Pipeline cabbccd88785f8ad1a8113c22ac7bb49 https://www.encodeproject.org/files/ENCFF790CEE/@@download/ENCFF790CEE.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity missing control alignments ENCFF001VNQ bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human ENCAB717EYF DNA see document see document False 2012-05-14 ENCODE 1146115 Michael Snyder, Stanford b2475dc323cf53adefd969fd6e10afd0 https://www.encodeproject.org/files/ENCFF001VNQ/@@download/ENCFF001VNQ.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF864KPF bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human ENCAB717EYF DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF160TSK, ENCFF710NTS, ENCFF749SYJ 3454555 ENCODE Processing Pipeline 28a0d206ad9f0c58408176c16513f403 https://www.encodeproject.org/files/ENCFF864KPF/@@download/ENCFF864KPF.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF583NBG bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human ENCAB717EYF DNA see document see document False 2012-05-14 ENCODE 2 ENCFF710NTS, ENCFF749SYJ 5054985 ENCODE Processing Pipeline 6aee239046d6bf1e67dc315de774e846 https://www.encodeproject.org/files/ENCFF583NBG/@@download/ENCFF583NBG.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF755LJZ bed narrowPeak peaks ENCSR000EGI ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAFF-human ENCAB717EYF DNA see document see document False 2012-05-14 ENCODE 1 ENCFF160TSK, ENCFF710NTS 4579891 ENCODE Processing Pipeline 9bed18f9f50fe4fe253a79d9ac223fdd https://www.encodeproject.org/files/ENCFF755LJZ/@@download/ENCFF755LJZ.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF001UJV bed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human ENCAB000AGG DNA see document see document False 2011-07-18 ENCODE 1 1 130970 Richard Myers, HAIB ec22eab1c9937560e7edbf6f3ad4823e https://www.encodeproject.org/files/ENCFF001UJV/@@download/ENCFF001UJV.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJW bed broadPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human ENCAB000AGG DNA see document see document False 2011-07-18 ENCODE 2 1 216089 Richard Myers, HAIB bf4270991ba79f1639f996dfa4db6949 https://www.encodeproject.org/files/ENCFF001UJW/@@download/ENCFF001UJW.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF927YRG bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human ENCAB000AGG DNA see document see document False 2011-07-18 ENCODE 1 ENCFF006UXO, ENCFF750MIM 4623186 ENCODE Processing Pipeline da847f33f2805400c0bc537204cf5d79 https://www.encodeproject.org/files/ENCFF927YRG/@@download/ENCFF927YRG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF122POU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human ENCAB000AGG DNA see document see document False 2011-07-18 ENCODE 2 ENCFF468AKT, ENCFF750MIM 1820030 ENCODE Processing Pipeline 3996b4cd7ed8486c8ccf3b1580007027 https://www.encodeproject.org/files/ENCFF122POU/@@download/ENCFF122POU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF128BVU bed narrowPeak peaks ENCSR000BKQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETS1-human ENCAB000AGG DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF006UXO, ENCFF468AKT, ENCFF750MIM 5584296 ENCODE Processing Pipeline 6a6ee7a237768d5ae8ce93c250880c3e https://www.encodeproject.org/files/ENCFF128BVU/@@download/ENCFF128BVU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF390GHC bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human ENCAB398QAO DNA False 2016-04-22 ENCODE 1 ENCFF539AVI, ENCFF581ZJL 6835475 ENCODE Processing Pipeline 1e4982da3ee81697cbcd6e206d6bd045 https://www.encodeproject.org/files/ENCFF390GHC/@@download/ENCFF390GHC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF355OVA bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human ENCAB398QAO DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF288YZC, ENCFF539AVI, ENCFF581ZJL 7203151 ENCODE Processing Pipeline 6a309cb361febca9809b97952c196ffd https://www.encodeproject.org/files/ENCFF355OVA/@@download/ENCFF355OVA.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF903NXY bed narrowPeak peaks ENCSR446LAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens DDX20-human ENCAB398QAO DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF288YZC 6491428 ENCODE Processing Pipeline 39529d91dcd5aa5a8305a0601fdfcc31 https://www.encodeproject.org/files/ENCFF903NXY/@@download/ENCFF903NXY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001VMN bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 48236 Sherman Weissman, Yale 50b07ca6d4aab39d6d36941093ee1e2f https://www.encodeproject.org/files/ENCFF001VMN/@@download/ENCFF001VMN.bed.gz hg19 archived mixed read lengths, control low read depth, borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF436KCV bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF691WRY, ENCFF793SYX 4310569 ENCODE Processing Pipeline cdf4ec1b8015e105b4b5e12560ceb1fa https://www.encodeproject.org/files/ENCFF436KCV/@@download/ENCFF436KCV.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF052OWI bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF691WRY 2438263 ENCODE Processing Pipeline 8e39fba942c4a657192a5716e9c84702 https://www.encodeproject.org/files/ENCFF052OWI/@@download/ENCFF052OWI.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF394RSM bed narrowPeak peaks ENCSR000EZW ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF793SYX 2131563 ENCODE Processing Pipeline 14ba65ae5c45d842c41cd3fc22b91023 https://www.encodeproject.org/files/ENCFF394RSM/@@download/ENCFF394RSM.bed.gz hg19 released mixed read lengths, control low read depth, borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF127VYL bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human ENCAB000ACR DNA False 2016-01-14 ENCODE 1, 2 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC, ENCFF946BKE 6960660 ENCODE Processing Pipeline 424c487b448113ec1d5a48e87875ff0e https://www.encodeproject.org/files/ENCFF127VYL/@@download/ENCFF127VYL.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF588ZYR bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human ENCAB000ACR DNA False 2016-01-14 ENCODE 1 ENCFF023YMB, ENCFF061QOJ, ENCFF862PIC 6374559 ENCODE Processing Pipeline c33c3673740b566fbda54f4be7e1c3de https://www.encodeproject.org/files/ENCFF588ZYR/@@download/ENCFF588ZYR.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF086FEW bed narrowPeak peaks ENCSR863KUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF7-human ENCAB000ACR DNA False 2016-01-14 ENCODE 2 ENCFF023YMB, ENCFF061QOJ, ENCFF946BKE 5994594 ENCODE Processing Pipeline 1a05c82267f19e88a3885da5e35280e9 https://www.encodeproject.org/files/ENCFF086FEW/@@download/ENCFF086FEW.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption missing control alignments ENCFF901YWM bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human ENCAB194LUB DNA False 2017-01-31 ENCODE 5 ENCFF160VXC, ENCFF514PZW 5344856 ENCODE Processing Pipeline 113821c7722aea3564c1cdcf523ba6b4 https://www.encodeproject.org/files/ENCFF901YWM/@@download/ENCFF901YWM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF251WTS bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human ENCAB194LUB DNA False 2017-01-31 ENCODE 6 ENCFF581FCG, ENCFF834TUP 6169947 ENCODE Processing Pipeline 6957338f2ef6045cc9d16ab633b71c0b https://www.encodeproject.org/files/ENCFF251WTS/@@download/ENCFF251WTS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF197DMK bed narrowPeak peaks ENCSR657JLK ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3B-human ENCAB194LUB DNA False 2017-01-31 ENCODE 5, 6 ENCFF160VXC, ENCFF514PZW, ENCFF581FCG, ENCFF834TUP 6822837 ENCODE Processing Pipeline 04d9d6ab389f32c6f14fc731e5b9d0e3 https://www.encodeproject.org/files/ENCFF197DMK/@@download/ENCFF197DMK.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF328DUA bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human ENCAB000AYH DNA False 2014-07-07 ENCODE 2 ENCFF509WOE, ENCFF879OQC 5231189 ENCODE Processing Pipeline 85f53ffb30f6faf16fe0caa5e9b060c9 https://www.encodeproject.org/files/ENCFF328DUA/@@download/ENCFF328DUA.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF567MRG bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human ENCAB000AYH DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF509WOE, ENCFF589BQJ, ENCFF879OQC 6495277 ENCODE Processing Pipeline 59919b41a010411d81de09be1a21bb21 https://www.encodeproject.org/files/ENCFF567MRG/@@download/ENCFF567MRG.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF067UPX bed narrowPeak peaks ENCSR038DJJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMAD1-human ENCAB000AYH DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF589BQJ 4686830 ENCODE Processing Pipeline 953df01f5694db5b646bd916b71b2a69 https://www.encodeproject.org/files/ENCFF067UPX/@@download/ENCFF067UPX.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF646ILI bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB473PPK DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF081SMO 6364084 ENCODE Processing Pipeline 2b4099828aa88a5b17f6459ebd04cc47 https://www.encodeproject.org/files/ENCFF646ILI/@@download/ENCFF646ILI.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF591FNP bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB473PPK DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF081SMO, ENCFF581ZJL, ENCFF986MVN 7188067 ENCODE Processing Pipeline af9d66f57dfa9f9e7dd32fc5e5899fc2 https://www.encodeproject.org/files/ENCFF591FNP/@@download/ENCFF591FNP.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF111ZUY bed narrowPeak peaks ENCSR389PWB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB5-human ENCAB473PPK DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF986MVN 6725810 ENCODE Processing Pipeline dae84b855bb6d50384574cdcf6723666 https://www.encodeproject.org/files/ENCFF111ZUY/@@download/ENCFF111ZUY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF156CAB bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human ENCAB528BVW DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF641ACA 7197623 ENCODE Processing Pipeline 258dc50cffc52d10458538e5364f12b1 https://www.encodeproject.org/files/ENCFF156CAB/@@download/ENCFF156CAB.bed.gz hg19 released ENCFF547QMS bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human ENCAB528BVW DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF269EAD 7104313 ENCODE Processing Pipeline 4b45735c8984edb6cb159083cf179107 https://www.encodeproject.org/files/ENCFF547QMS/@@download/ENCFF547QMS.bed.gz hg19 released ENCFF305RMT bed narrowPeak peaks ENCSR895HSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA5-human ENCAB528BVW DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF269EAD, ENCFF581ZJL, ENCFF641ACA 7247504 ENCODE Processing Pipeline 7f3fff033890b11d8b8451fd6ea3f9f7 https://www.encodeproject.org/files/ENCFF305RMT/@@download/ENCFF305RMT.bed.gz hg19 released ENCFF438LLN bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human ENCAB426WVA DNA False 2016-10-12 ENCODE 1, 2 ENCFF277XXK, ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 6963927 ENCODE Processing Pipeline 8da2c2417956aedccde0b15abe913175 https://www.encodeproject.org/files/ENCFF438LLN/@@download/ENCFF438LLN.bed.gz hg19 released mixed read lengths, antibody characterized with exemption ENCFF204QNV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human ENCAB426WVA DNA False 2016-10-12 ENCODE 1 ENCFF454QBD, ENCFF496KXN, ENCFF847YDJ 6492911 ENCODE Processing Pipeline 9de266ebdbe9e0035b2c922738642fcf https://www.encodeproject.org/files/ENCFF204QNV/@@download/ENCFF204QNV.bed.gz hg19 released mixed read lengths, antibody characterized with exemption ENCFF925VOV bed narrowPeak peaks ENCSR102KIN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMYM3-human ENCAB426WVA DNA False 2016-10-12 ENCODE 2 ENCFF277XXK, ENCFF454QBD, ENCFF847YDJ 6133457 ENCODE Processing Pipeline 225a6eb7aa177f322f26910ce442b90d https://www.encodeproject.org/files/ENCFF925VOV/@@download/ENCFF925VOV.bed.gz hg19 released mixed read lengths, antibody characterized with exemption ENCFF786DOF bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-09-20 ENCODE 3 ENCFF090JBA, ENCFF160VXC 6967101 ENCODE Processing Pipeline 2ec38696cf24579860c517913f038387 https://www.encodeproject.org/files/ENCFF786DOF/@@download/ENCFF786DOF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF733TAS bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-09-20 ENCODE 4 ENCFF368KYI, ENCFF834TUP 7027912 ENCODE Processing Pipeline 0de62bf87fc85a4410f6e86e79d8876a https://www.encodeproject.org/files/ENCFF733TAS/@@download/ENCFF733TAS.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF163OZR bed narrowPeak peaks ENCSR968GIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-09-20 ENCODE 3, 4 ENCFF090JBA, ENCFF160VXC, ENCFF368KYI, ENCFF834TUP 7224661 ENCODE Processing Pipeline a9fccfe8c2260b5662877651118d1aa9 https://www.encodeproject.org/files/ENCFF163OZR/@@download/ENCFF163OZR.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF842STK bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human ENCAB027LVC DNA False 2017-06-23 ENCODE 2 ENCFF051LWI, ENCFF564MED 5744360 ENCODE Processing Pipeline dd0c6deb8ecd5d8954ff908d0cda5c4f https://www.encodeproject.org/files/ENCFF842STK/@@download/ENCFF842STK.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF363FXM bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human ENCAB027LVC DNA False 2017-06-23 ENCODE 1 ENCFF079ISN, ENCFF581ZJL 6046627 ENCODE Processing Pipeline 668b680c249969f3157acbe573a4627e https://www.encodeproject.org/files/ENCFF363FXM/@@download/ENCFF363FXM.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF039BZL bed narrowPeak peaks ENCSR654CQU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNIP1-human ENCAB027LVC DNA False 2017-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF079ISN, ENCFF564MED, ENCFF581ZJL 7008942 ENCODE Processing Pipeline fb9d2f5bd12e39ed8efb1d32b5c0ddc1 https://www.encodeproject.org/files/ENCFF039BZL/@@download/ENCFF039BZL.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF001VNS bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2012-05-14 ENCODE 830561 Michael Snyder, Stanford 53d37128b9036301c7fc2b74ee4bf7d2 https://www.encodeproject.org/files/ENCFF001VNS/@@download/ENCFF001VNS.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF087MNA bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF938QJA 5449286 ENCODE Processing Pipeline 4556722732e40deaaae36ab6421f2466 https://www.encodeproject.org/files/ENCFF087MNA/@@download/ENCFF087MNA.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF375JMY bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2012-05-14 ENCODE 2 ENCFF543CKI, ENCFF710NTS 3550767 ENCODE Processing Pipeline 35c0d89b30c713f3d58bc4a0379b79fd https://www.encodeproject.org/files/ENCFF375JMY/@@download/ENCFF375JMY.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF417GYT bed narrowPeak peaks ENCSR000EFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF543CKI, ENCFF710NTS, ENCFF938QJA 5862289 ENCODE Processing Pipeline 3476e1449056b1c577ed1bc48b44da15 https://www.encodeproject.org/files/ENCFF417GYT/@@download/ENCFF417GYT.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF849XOM bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human ENCAB728YTO DNA False 2017-02-13 ENCODE 1 ENCFF127KUO, ENCFF432JII 7306581 ENCODE Processing Pipeline 569991f0b6311ded2e5751c48f9e24e0 https://www.encodeproject.org/files/ENCFF849XOM/@@download/ENCFF849XOM.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF228ORA bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human ENCAB728YTO DNA False 2017-02-13 ENCODE 1, 2 ENCFF040FFN, ENCFF127KUO, ENCFF432JII 7276095 ENCODE Processing Pipeline e9a5cd3ba5431dec031b1956d48404f2 https://www.encodeproject.org/files/ENCFF228ORA/@@download/ENCFF228ORA.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF225EQY bed narrowPeak peaks ENCSR674SCQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF354B-human ENCAB728YTO DNA False 2017-02-13 ENCODE 2 ENCFF040FFN, ENCFF127KUO 7241061 ENCODE Processing Pipeline a13201e6f9f9a88ae3150af208eea6db https://www.encodeproject.org/files/ENCFF225EQY/@@download/ENCFF225EQY.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF653QLK bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB277XLW DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF345IKW, ENCFF391WXJ, ENCFF581ZJL 7224054 ENCODE Processing Pipeline 15ad048ac2ac50648143c494a23ae8eb https://www.encodeproject.org/files/ENCFF653QLK/@@download/ENCFF653QLK.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF306ZWZ bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB277XLW DNA False 2018-01-26 ENCODE 1 ENCFF391WXJ, ENCFF581ZJL 6898277 ENCODE Processing Pipeline a7291abb982198f7a84b1f6a90cf8769 https://www.encodeproject.org/files/ENCFF306ZWZ/@@download/ENCFF306ZWZ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF413ETF bed narrowPeak peaks ENCSR426URK ChIP-seq EFO:0002067 K562 cell line Homo sapiens AFF1-human ENCAB277XLW DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF345IKW 6641125 ENCODE Processing Pipeline 19cc28863f7fd760e831d9789aaec04c https://www.encodeproject.org/files/ENCFF413ETF/@@download/ENCFF413ETF.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001VLW bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human ENCAB000ASQ DNA see document see document False 2012-05-14 ENCODE 849854 Michael Snyder, Stanford cb26007d18a7cf24a0b680ad24cb1d4a https://www.encodeproject.org/files/ENCFF001VLW/@@download/ENCFF001VLW.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF378JGJ bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human ENCAB000ASQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF710NTS, ENCFF992ORW 5188832 ENCODE Processing Pipeline 98ce87791b953d6bb2d7f3af8c7c40b1 https://www.encodeproject.org/files/ENCFF378JGJ/@@download/ENCFF378JGJ.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF732QKX bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human ENCAB000ASQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF102ROD, ENCFF710NTS 4458460 ENCODE Processing Pipeline 7ecea1a5ecb46e2e36d17349a13d2f11 https://www.encodeproject.org/files/ENCFF732QKX/@@download/ENCFF732QKX.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF411VNI bed narrowPeak peaks ENCSR000EFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens ARID3A-human ENCAB000ASQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF102ROD, ENCFF710NTS, ENCFF992ORW 5709734 ENCODE Processing Pipeline 9e5231e5c5f8289161374e1eeac19545 https://www.encodeproject.org/files/ENCFF411VNI/@@download/ENCFF411VNI.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF360GCE bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF642OQJ, ENCFF831FLE 6900000 ENCODE Processing Pipeline 17198703d90150d4dc8dd66cdc74f495 https://www.encodeproject.org/files/ENCFF360GCE/@@download/ENCFF360GCE.bed.gz hg19 released missing genetic modification characterization ENCFF118EXB bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF831FLE, ENCFF938KSJ 6685960 ENCODE Processing Pipeline 80b3bb1da20547a692d75886b0ce8f51 https://www.encodeproject.org/files/ENCFF118EXB/@@download/ENCFF118EXB.bed.gz hg19 released missing genetic modification characterization ENCFF321FDW bed narrowPeak peaks ENCSR709DRM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-E2F5-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF642OQJ, ENCFF831FLE, ENCFF938KSJ 7157256 ENCODE Processing Pipeline f409e3573e9634709e8bc3a394e46f13 https://www.encodeproject.org/files/ENCFF321FDW/@@download/ENCFF321FDW.bed.gz hg19 released missing genetic modification characterization ENCFF001VNG bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB000AHE DNA see document see document False 2011-10-29 ENCODE 408221 Michael Snyder, Stanford 24c2a5ba894e0cc0c6527157d5a9d17e https://www.encodeproject.org/files/ENCFF001VNG/@@download/ENCFF001VNG.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF220GLK bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB000AHE DNA see document see document False 2011-10-29 ENCODE 1 ENCFF698GEX, ENCFF710NTS 4742038 ENCODE Processing Pipeline eed575974928ae29e2b021dd1f635577 https://www.encodeproject.org/files/ENCFF220GLK/@@download/ENCFF220GLK.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF614RPL bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB000AHE DNA see document see document False 2011-10-29 ENCODE 2 ENCFF120JUM, ENCFF710NTS 4859422 ENCODE Processing Pipeline c2be15b33254bff97f9bbe443bdf3db2 https://www.encodeproject.org/files/ENCFF614RPL/@@download/ENCFF614RPL.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF123HUT bed narrowPeak peaks ENCSR000EHC ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2F1-human ENCAB000AHE DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF120JUM, ENCFF698GEX, ENCFF710NTS 5619346 ENCODE Processing Pipeline 41407496caad251a815f422fa7b4267d https://www.encodeproject.org/files/ENCFF123HUT/@@download/ENCFF123HUT.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF902RHR bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human ENCAB349SAR DNA False 2016-10-14 ENCODE 1 ENCFF158LEE, ENCFF581ZJL 7166913 ENCODE Processing Pipeline c79d8243bfba48199c241beffa9d9377 https://www.encodeproject.org/files/ENCFF902RHR/@@download/ENCFF902RHR.bed.gz hg19 released ENCFF452CEM bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human ENCAB349SAR DNA False 2016-10-14 ENCODE 2 ENCFF051LWI, ENCFF204XLM 7193583 ENCODE Processing Pipeline db70e968a32451c5251dbc5acdc4e646 https://www.encodeproject.org/files/ENCFF452CEM/@@download/ENCFF452CEM.bed.gz hg19 released ENCFF548OKF bed narrowPeak peaks ENCSR894CGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SUPT5H-human ENCAB349SAR DNA False 2016-10-14 ENCODE 1, 2 ENCFF051LWI, ENCFF158LEE, ENCFF204XLM, ENCFF581ZJL 7178717 ENCODE Processing Pipeline 5da3dc4f11b407e1074dcdf274dc4ad4 https://www.encodeproject.org/files/ENCFF548OKF/@@download/ENCFF548OKF.bed.gz hg19 released ENCFF001UKP bed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human ENCAB000AKA DNA see document see document False 2012-02-29 ENCODE 1 1 187649 Richard Myers, HAIB 75044ed4b50141c9407944a29fc6f154 https://www.encodeproject.org/files/ENCFF001UKP/@@download/ENCFF001UKP.bed.gz hg19 archived inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF001UKQ bed broadPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human ENCAB000AKA DNA see document see document False 2012-02-29 ENCODE 2 1 329971 Richard Myers, HAIB 99c5e56d15b4d804a40eb6f17617ab57 https://www.encodeproject.org/files/ENCFF001UKQ/@@download/ENCFF001UKQ.bed.gz hg19 archived inconsistent platforms, low read depth, low read length biological replicates with identical biosample, missing derived_from ENCFF475WRI bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human ENCAB000AKA DNA see document see document False 2012-02-29 ENCODE 2 ENCFF183MYT, ENCFF522HDC 6517388 ENCODE Processing Pipeline c4e7999b743103ac6a463192629ddcf9 https://www.encodeproject.org/files/ENCFF475WRI/@@download/ENCFF475WRI.bed.gz hg19 released inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF647VTS bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human ENCAB000AKA DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF183MYT, ENCFF522HDC, ENCFF922XZM 6965069 ENCODE Processing Pipeline dd858bedaafc16979abfd393ada9814b https://www.encodeproject.org/files/ENCFF647VTS/@@download/ENCFF647VTS.bed.gz hg19 released inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF357MIU bed narrowPeak peaks ENCSR000BQY ChIP-seq EFO:0002067 K562 cell line Homo sapiens PML-human ENCAB000AKA DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF922XZM 6322452 ENCODE Processing Pipeline 6bd5eb15d02d727dec9f873ffc478a67 https://www.encodeproject.org/files/ENCFF357MIU/@@download/ENCFF357MIU.bed.gz hg19 released inconsistent platforms, low read depth, low read length biological replicates with identical biosample ENCFF001VOF bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 268652 Michael Snyder, Stanford 0e1e4bcfbc9143d6da9027890b928bf0 https://www.encodeproject.org/files/ENCFF001VOF/@@download/ENCFF001VOF.bed.gz hg19 archived mixed read lengths, low read depth biological replicates with identical biosample, missing derived_from insufficient read length, control insufficient read depth, insufficient read depth ENCFF050JYN bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF287WTN, ENCFF743JWE 3663233 ENCODE Processing Pipeline 1017df22cef1ab3d6851b3a7962ed2fd https://www.encodeproject.org/files/ENCFF050JYN/@@download/ENCFF050JYN.bed.gz hg19 released mixed read lengths, low read depth biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth ENCFF278XFP bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF287WTN, ENCFF583QFG 5443236 ENCODE Processing Pipeline 5cc4ac63006cbb2586c6108c05a5b363 https://www.encodeproject.org/files/ENCFF278XFP/@@download/ENCFF278XFP.bed.gz hg19 released mixed read lengths, low read depth biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth ENCFF188QEA bed narrowPeak peaks ENCSR000EHP ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF287WTN, ENCFF583QFG, ENCFF743JWE 5889292 ENCODE Processing Pipeline 594dec0c561ac61635170ca86192f653 https://www.encodeproject.org/files/ENCFF188QEA/@@download/ENCFF188QEA.bed.gz hg19 released mixed read lengths, low read depth biological replicates with identical biosample insufficient read length, control insufficient read depth, insufficient read depth ENCFF898ILE bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB426USL DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF175TNH, ENCFF581ZJL, ENCFF720PEL 7151903 ENCODE Processing Pipeline f7621d311206eb0618a9bca6441fb0c1 https://www.encodeproject.org/files/ENCFF898ILE/@@download/ENCFF898ILE.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF244YZX bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB426USL DNA False 2016-06-14 ENCODE 1 ENCFF175TNH, ENCFF581ZJL 6318220 ENCODE Processing Pipeline 7690abbf3fc7c97d08a017e957604a05 https://www.encodeproject.org/files/ENCFF244YZX/@@download/ENCFF244YZX.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF050TDD bed narrowPeak peaks ENCSR352BJL ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB426USL DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF720PEL 6579727 ENCODE Processing Pipeline ef27ea44e3d30e879a25641255d79101 https://www.encodeproject.org/files/ENCFF050TDD/@@download/ENCFF050TDD.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF001VMK bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2012-05-14 ENCODE 742055 Michael Snyder, Stanford 1f9d7b9a010e07c19113f25635dc0d41 https://www.encodeproject.org/files/ENCFF001VMK/@@download/ENCFF001VMK.bed.gz hg19 archived control low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF257FNC bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2012-05-14 ENCODE 1 ENCFF650MOB, ENCFF943CTI 3403440 ENCODE Processing Pipeline c7c78f86b4257bf45fb74f8d62b94c06 https://www.encodeproject.org/files/ENCFF257FNC/@@download/ENCFF257FNC.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF063HEH bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2012-05-14 ENCODE 2 ENCFF650MOB, ENCFF892MVR 3839966 ENCODE Processing Pipeline ffad26b8cc4cbfb3dcaa7882c1958b37 https://www.encodeproject.org/files/ENCFF063HEH/@@download/ENCFF063HEH.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF767GKW bed narrowPeak peaks ENCSR000EGH ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute JUN-human ENCAB000AER DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF650MOB, ENCFF892MVR, ENCFF943CTI 4353278 ENCODE Processing Pipeline ae495c1e29894309630830002f904f26 https://www.encodeproject.org/files/ENCFF767GKW/@@download/ENCFF767GKW.bed.gz hg19 released control low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF415VFS bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human ENCAB180KRZ DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF177GKX, ENCFF908KFH 5026604 ENCODE Processing Pipeline 8e5f7c10cc85b739677753af635c01be https://www.encodeproject.org/files/ENCFF415VFS/@@download/ENCFF415VFS.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO ENCFF677EHH bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human ENCAB180KRZ DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF177GKX, ENCFF908KFH, ENCFF937ONB, ENCFF993VCM 6340399 ENCODE Processing Pipeline c2c8ee0ea76767c46cd9b7309db25e3e https://www.encodeproject.org/files/ENCFF677EHH/@@download/ENCFF677EHH.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO ENCFF297NXF bed narrowPeak peaks ENCSR072VUO ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAFB-human ENCAB180KRZ DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF937ONB, ENCFF993VCM 5119955 ENCODE Processing Pipeline 44598347b1ae405daae52bef3344bd9b https://www.encodeproject.org/files/ENCFF297NXF/@@download/ENCFF297NXF.bed.gz hg19 released borderline replicate concordance, low read depth, low read length experiment not submitted to GEO ENCFF904YUH bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human ENCAB224FFQ DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF534OTQ 6830870 ENCODE Processing Pipeline 6d5890f88e3ef7e3c6dc6be88c11c67e https://www.encodeproject.org/files/ENCFF904YUH/@@download/ENCFF904YUH.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF133EYO bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human ENCAB224FFQ DNA False 2018-01-26 ENCODE 1 ENCFF019NMV, ENCFF581ZJL 6905870 ENCODE Processing Pipeline 593a7b157fdd9fe7c6683d3eb14892e2 https://www.encodeproject.org/files/ENCFF133EYO/@@download/ENCFF133EYO.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF696BJA bed narrowPeak peaks ENCSR953DVM ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F8-human ENCAB224FFQ DNA False 2018-01-26 ENCODE 1, 2 ENCFF019NMV, ENCFF051LWI, ENCFF534OTQ, ENCFF581ZJL 7168536 ENCODE Processing Pipeline 52b97caf9cbb78cdb0d7fdba098bd89c https://www.encodeproject.org/files/ENCFF696BJA/@@download/ENCFF696BJA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF057GKG bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB649WEQ DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF821TOA 6650101 ENCODE Processing Pipeline c685a5d1d610d6d4d42b6e64e6cba59b https://www.encodeproject.org/files/ENCFF057GKG/@@download/ENCFF057GKG.bed.gz hg19 released ENCFF929AWJ bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB649WEQ DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF471WLV 6341953 ENCODE Processing Pipeline b55cda7b5759eaf429e79fa33aa4ff83 https://www.encodeproject.org/files/ENCFF929AWJ/@@download/ENCFF929AWJ.bed.gz hg19 released ENCFF400BXE bed narrowPeak peaks ENCSR675LRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens MLLT1-human ENCAB649WEQ DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF471WLV, ENCFF581ZJL, ENCFF821TOA 7231144 ENCODE Processing Pipeline be3d1c655e0c192b2e782be178ccd282 https://www.encodeproject.org/files/ENCFF400BXE/@@download/ENCFF400BXE.bed.gz hg19 released ENCFF696NDZ bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB301SIR DNA False 2016-07-28 ENCODE 1 ENCFF050ZWR, ENCFF581ZJL 6922724 ENCODE Processing Pipeline cdeff180b250f2f1f3a024f0da98ba52 https://www.encodeproject.org/files/ENCFF696NDZ/@@download/ENCFF696NDZ.bed.gz hg19 released low read depth ENCFF232HEV bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB301SIR DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF842SKP 6884646 ENCODE Processing Pipeline 4416b7547a5b229856a3940d5b90c0f9 https://www.encodeproject.org/files/ENCFF232HEV/@@download/ENCFF232HEV.bed.gz hg19 released low read depth ENCFF813HMN bed narrowPeak peaks ENCSR820GND ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB301SIR DNA False 2016-07-28 ENCODE 1, 2 ENCFF050ZWR, ENCFF051LWI, ENCFF581ZJL, ENCFF842SKP 7260038 ENCODE Processing Pipeline 708edd54fcc71c29c1c51c1f0d9321f9 https://www.encodeproject.org/files/ENCFF813HMN/@@download/ENCFF813HMN.bed.gz hg19 released low read depth ENCFF920IJY bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB899PTZ DNA False 2017-05-17 ENCODE 1 ENCFF065XRG, ENCFF581ZJL 6522057 ENCODE Processing Pipeline 5eabd6928477c3a58ca0ae21b1f17a75 https://www.encodeproject.org/files/ENCFF920IJY/@@download/ENCFF920IJY.bed.gz hg19 released low read depth ENCFF634YJK bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB899PTZ DNA False 2017-05-17 ENCODE 2 ENCFF051LWI, ENCFF293ZMY 6662684 ENCODE Processing Pipeline e54b64c6a6acb14134508fc5c8ce4087 https://www.encodeproject.org/files/ENCFF634YJK/@@download/ENCFF634YJK.bed.gz hg19 released low read depth ENCFF343JJX bed narrowPeak peaks ENCSR211LTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB899PTZ DNA False 2017-05-17 ENCODE 1, 2 ENCFF051LWI, ENCFF065XRG, ENCFF293ZMY, ENCFF581ZJL 7206115 ENCODE Processing Pipeline cba0e2fa24564ec8b1cf8f14f0545dfe https://www.encodeproject.org/files/ENCFF343JJX/@@download/ENCFF343JJX.bed.gz hg19 released low read depth ENCFF627BPL bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF061ITH, ENCFF248TDS 5814015 ENCODE Processing Pipeline 8c7679a34fda59f121cf043aaec21874 https://www.encodeproject.org/files/ENCFF627BPL/@@download/ENCFF627BPL.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF771POP bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF061ITH, ENCFF612OEV 5393271 ENCODE Processing Pipeline 3d5ccbf5d23405626938d5298e2ab55d https://www.encodeproject.org/files/ENCFF771POP/@@download/ENCFF771POP.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF197SSW bed narrowPeak peaks ENCSR632SHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NFE2L1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF061ITH, ENCFF248TDS, ENCFF612OEV 6618308 ENCODE Processing Pipeline b541c750fffb322010bdc55c943f7fd6 https://www.encodeproject.org/files/ENCFF197SSW/@@download/ENCFF197SSW.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF154QJU bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human ENCAB054XFU DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF395KST, ENCFF834TUP 7279922 ENCODE Processing Pipeline be6739a8f963d3d5d5c3b71cd6711c23 https://www.encodeproject.org/files/ENCFF154QJU/@@download/ENCFF154QJU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF369BMF bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human ENCAB054XFU DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF576JOB 7159010 ENCODE Processing Pipeline 6bbd56ec9d30ee5b868b01dad1cd4061 https://www.encodeproject.org/files/ENCFF369BMF/@@download/ENCFF369BMF.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF942IAL bed narrowPeak peaks ENCSR928KOR ChIP-seq EFO:0002067 K562 cell line Homo sapiens GMEB1-human ENCAB054XFU DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF395KST, ENCFF576JOB, ENCFF834TUP 7305116 ENCODE Processing Pipeline 773b1d90a2492e276a9e719e409a444c https://www.encodeproject.org/files/ENCFF942IAL/@@download/ENCFF942IAL.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF119HTJ bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human ENCAB212EPQ DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP 7158688 ENCODE Processing Pipeline 75295dfe55f5bd4bfd290e17652e20fa https://www.encodeproject.org/files/ENCFF119HTJ/@@download/ENCFF119HTJ.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking missing control alignments ENCFF613QHY bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human ENCAB212EPQ DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF713FNS, ENCFF834TUP, ENCFF894UKH 7243838 ENCODE Processing Pipeline 16ac8d3b1027ce9f4715e9cb34efd8ad https://www.encodeproject.org/files/ENCFF613QHY/@@download/ENCFF613QHY.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking missing control alignments ENCFF196BYO bed narrowPeak peaks ENCSR871TKJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens THRAP3-human ENCAB212EPQ DNA False 2016-11-17 ENCODE 2 ENCFF834TUP, ENCFF894UKH 7190905 ENCODE Processing Pipeline 384d7721ceedfc6c87bc7fdbba81a592 https://www.encodeproject.org/files/ENCFF196BYO/@@download/ENCFF196BYO.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking missing control alignments ENCFF184LWN bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB320AXF DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF862OJR 6760658 ENCODE Processing Pipeline e5fada76098ed965199101b8c6704614 https://www.encodeproject.org/files/ENCFF184LWN/@@download/ENCFF184LWN.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF626FHE bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB320AXF DNA False 2018-01-26 ENCODE 2 ENCFF586ITU, ENCFF834TUP 7030359 ENCODE Processing Pipeline 89890d22842a3d686828dd8bf8a1d8b9 https://www.encodeproject.org/files/ENCFF626FHE/@@download/ENCFF626FHE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF544LRY bed narrowPeak peaks ENCSR033NQK ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF830-human ENCAB320AXF DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF586ITU, ENCFF834TUP, ENCFF862OJR 7204945 ENCODE Processing Pipeline 62a84a58a366a2bbc905adfc2e66dc8e https://www.encodeproject.org/files/ENCFF544LRY/@@download/ENCFF544LRY.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF778NFD bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human ENCAB292USO DNA False 2016-06-23 ENCODE 4 ENCFF051LWI, ENCFF675GYP 7067095 ENCODE Processing Pipeline 3555732e90f0ff054715edfa7fa639e3 https://www.encodeproject.org/files/ENCFF778NFD/@@download/ENCFF778NFD.bed.gz hg19 released low read depth ENCFF388RWJ bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human ENCAB292USO DNA False 2016-06-23 ENCODE 3 ENCFF397XVJ, ENCFF581ZJL 7022368 ENCODE Processing Pipeline c5f090b4652004481eb89024056e4c29 https://www.encodeproject.org/files/ENCFF388RWJ/@@download/ENCFF388RWJ.bed.gz hg19 released low read depth ENCFF108BVL bed narrowPeak peaks ENCSR876GXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB33-human ENCAB292USO DNA False 2016-06-23 ENCODE 3, 4 ENCFF051LWI, ENCFF397XVJ, ENCFF581ZJL, ENCFF675GYP 7278648 ENCODE Processing Pipeline 2e985497367799e3ea0d43b1ad7cb110 https://www.encodeproject.org/files/ENCFF108BVL/@@download/ENCFF108BVL.bed.gz hg19 released low read depth ENCFF774YSI bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB257ANZ DNA False 2017-11-14 ENCODE 3 ENCFF051LWI, ENCFF367DJA 6509231 ENCODE Processing Pipeline 07f7a12bd73ad380f2b0c5a211bb898c https://www.encodeproject.org/files/ENCFF774YSI/@@download/ENCFF774YSI.bed.gz hg19 released experiment not submitted to GEO ENCFF021ITV bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB257ANZ DNA False 2017-11-14 ENCODE 1, 3 ENCFF051LWI, ENCFF064TLT, ENCFF367DJA, ENCFF581ZJL 7206008 ENCODE Processing Pipeline b7b50a573dbbd6d4c5b979730f945560 https://www.encodeproject.org/files/ENCFF021ITV/@@download/ENCFF021ITV.bed.gz hg19 released experiment not submitted to GEO ENCFF481CBF bed narrowPeak peaks ENCSR474CVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB257ANZ DNA False 2017-11-14 ENCODE 1 ENCFF064TLT, ENCFF581ZJL 6923903 ENCODE Processing Pipeline bb2ded9a9d6cfd8870342e0797f3babb https://www.encodeproject.org/files/ENCFF481CBF/@@download/ENCFF481CBF.bed.gz hg19 released experiment not submitted to GEO ENCFF612RKY bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB220HTO DNA False 2018-01-26 ENCODE 1 ENCFF463TFB, ENCFF581ZJL 6725703 ENCODE Processing Pipeline db56a1b97b1aaba7d7eb2ed370b55e66 https://www.encodeproject.org/files/ENCFF612RKY/@@download/ENCFF612RKY.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF322PWJ bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB220HTO DNA False 2018-01-26 ENCODE 2 ENCFF377LXP, ENCFF581ZJL 6801753 ENCODE Processing Pipeline 2420fa96d885bfe037e9400bacf6af0d https://www.encodeproject.org/files/ENCFF322PWJ/@@download/ENCFF322PWJ.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF834QOU bed narrowPeak peaks ENCSR552PSV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM2-human ENCAB220HTO DNA False 2018-01-26 ENCODE 1, 2 ENCFF377LXP, ENCFF463TFB, ENCFF581ZJL 7178986 ENCODE Processing Pipeline 96d447e85b4ef8c371e1393c1fa6854d https://www.encodeproject.org/files/ENCFF834QOU/@@download/ENCFF834QOU.bed.gz hg19 released experiment not submitted to GEO partially characterized antibody ENCFF792BGD bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB363ALA DNA False 2016-11-10 ENCODE 1 ENCFF261IPD, ENCFF581ZJL 7131811 ENCODE Processing Pipeline 67d81b44082df3acf776e6da2c5fab41 https://www.encodeproject.org/files/ENCFF792BGD/@@download/ENCFF792BGD.bed.gz hg19 released ENCFF247ZEK bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB363ALA DNA False 2016-11-10 ENCODE 2 ENCFF051LWI, ENCFF585HLM 7215524 ENCODE Processing Pipeline 568aa4401b01bb57d232d82928afe0d4 https://www.encodeproject.org/files/ENCFF247ZEK/@@download/ENCFF247ZEK.bed.gz hg19 released ENCFF226IEC bed narrowPeak peaks ENCSR167KBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF316-human ENCAB363ALA DNA False 2016-11-10 ENCODE 1, 2 ENCFF051LWI, ENCFF261IPD, ENCFF581ZJL, ENCFF585HLM 7331628 ENCODE Processing Pipeline bb7ab94faf3c35c0751195507dbfaf7e https://www.encodeproject.org/files/ENCFF226IEC/@@download/ENCFF226IEC.bed.gz hg19 released ENCFF053IVE bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB805KAO DNA False 2016-11-17 ENCODE 2 ENCFF051LWI, ENCFF491SHN 6543669 ENCODE Processing Pipeline 90dfef52ac8083f3669e86d458fcf7e5 https://www.encodeproject.org/files/ENCFF053IVE/@@download/ENCFF053IVE.bed.gz hg19 released low read depth missing control alignments ENCFF380AQD bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB805KAO DNA False 2016-11-17 ENCODE 1 ENCFF252BMK, ENCFF581ZJL 6596604 ENCODE Processing Pipeline adb8150c7c79973e22d5a89c5e5f8249 https://www.encodeproject.org/files/ENCFF380AQD/@@download/ENCFF380AQD.bed.gz hg19 released low read depth missing control alignments ENCFF269ZNE bed narrowPeak peaks ENCSR298JCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB805KAO DNA False 2016-11-17 ENCODE 1, 2 ENCFF051LWI, ENCFF252BMK, ENCFF491SHN, ENCFF581ZJL 7193815 ENCODE Processing Pipeline d541d28f5f064a3aecb26d090dfc28c0 https://www.encodeproject.org/files/ENCFF269ZNE/@@download/ENCFF269ZNE.bed.gz hg19 released low read depth missing control alignments ENCFF496DRF bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF122RZR, ENCFF749SPN 6600546 ENCODE Processing Pipeline e10b945072947412a4967a04e7cda307 https://www.encodeproject.org/files/ENCFF496DRF/@@download/ENCFF496DRF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF586UNH bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF122RZR, ENCFF151KAU, ENCFF749SPN 7054018 ENCODE Processing Pipeline 9aa1c3c23f60d389f728bb3134d3104c https://www.encodeproject.org/files/ENCFF586UNH/@@download/ENCFF586UNH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF870WRO bed narrowPeak peaks ENCSR149ZBI ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF584-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF122RZR, ENCFF151KAU 6411041 ENCODE Processing Pipeline 7468371d858620d613dcb242d0996952 https://www.encodeproject.org/files/ENCFF870WRO/@@download/ENCFF870WRO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization missing control alignments ENCFF648RRL bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human ENCAB000AAK DNA see document see document False 2014-07-07 ENCODE 2 ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 6467947 ENCODE Processing Pipeline 4435ee4a7fe139f08413b2140a3f41ff https://www.encodeproject.org/files/ENCFF648RRL/@@download/ENCFF648RRL.bed.gz hg19 released ENCFF052CCG bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human ENCAB000AAK DNA see document see document False 2014-07-07 ENCODE 1 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP 6399337 ENCODE Processing Pipeline ea0184726994327edd2dadc7190bb8fe https://www.encodeproject.org/files/ENCFF052CCG/@@download/ENCFF052CCG.bed.gz hg19 released ENCFF259MRC bed narrowPeak peaks ENCSR286PCG ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBED1-human ENCAB000AAK DNA see document see document False 2014-07-07 ENCODE 1, 2 ENCFF016MFU, ENCFF023YMB, ENCFF578ISP, ENCFF986OUP 7007314 ENCODE Processing Pipeline 5951ae5c8afd1cd3a1d840f766badeea https://www.encodeproject.org/files/ENCFF259MRC/@@download/ENCFF259MRC.bed.gz hg19 released ENCFF612BZJ bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB336UOP DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF845QLW 6936134 ENCODE Processing Pipeline d72f450110faad9e7f9859b35d269540 https://www.encodeproject.org/files/ENCFF612BZJ/@@download/ENCFF612BZJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF670NDN bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB336UOP DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF666QOX 7008065 ENCODE Processing Pipeline fb61bad4afd6e625fe1b841d2b318320 https://www.encodeproject.org/files/ENCFF670NDN/@@download/ENCFF670NDN.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF763UDO bed narrowPeak peaks ENCSR031TFS ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB336UOP DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666QOX, ENCFF845QLW 7275287 ENCODE Processing Pipeline 559de1fbe59b62a1e14173f0fb447d3a https://www.encodeproject.org/files/ENCFF763UDO/@@download/ENCFF763UDO.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF749VLH bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human ENCAB493UWX DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF509PRR, ENCFF581ZJL, ENCFF869CLO 6885687 ENCODE Processing Pipeline 3cdd62a71274791f962614d9d85b3c5c https://www.encodeproject.org/files/ENCFF749VLH/@@download/ENCFF749VLH.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF609DTK bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human ENCAB493UWX DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF869CLO 5620010 ENCODE Processing Pipeline 13acb9cf6ce2e69b859c7aabf99aaa7e https://www.encodeproject.org/files/ENCFF609DTK/@@download/ENCFF609DTK.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF669CKL bed narrowPeak peaks ENCSR107RHZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX1-human ENCAB493UWX DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF509PRR 5169710 ENCODE Processing Pipeline d898317747cf0dc762e0cc49c37d2566 https://www.encodeproject.org/files/ENCFF669CKL/@@download/ENCFF669CKL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF285LKH bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human ENCAB643QQV DNA False 2016-09-26 ENCODE 1 ENCFF160VXC, ENCFF327GHK, ENCFF834TUP 6837520 ENCODE Processing Pipeline 79ea0c0bf9dea9f99781d0a485899deb https://www.encodeproject.org/files/ENCFF285LKH/@@download/ENCFF285LKH.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF549VOY bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human ENCAB643QQV DNA False 2016-09-26 ENCODE 2 ENCFF494NSZ, ENCFF834TUP 6317672 ENCODE Processing Pipeline 509ed1052051da43fe4fb739e335d00f https://www.encodeproject.org/files/ENCFF549VOY/@@download/ENCFF549VOY.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF407JTS bed narrowPeak peaks ENCSR130HEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens COPS2-human ENCAB643QQV DNA False 2016-09-26 ENCODE 1, 2 ENCFF160VXC, ENCFF327GHK, ENCFF494NSZ, ENCFF834TUP 7223483 ENCODE Processing Pipeline cc3655f625f6cb14c1164987c83545d1 https://www.encodeproject.org/files/ENCFF407JTS/@@download/ENCFF407JTS.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF692PZN bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF134DGA, ENCFF504MHQ 5762717 ENCODE Processing Pipeline 451091687b3aefde73fb058b458e4c48 https://www.encodeproject.org/files/ENCFF692PZN/@@download/ENCFF692PZN.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF645BHJ bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF504MHQ, ENCFF956MXT 5519587 ENCODE Processing Pipeline 5be4408221069af6c93c53b0359ca945 https://www.encodeproject.org/files/ENCFF645BHJ/@@download/ENCFF645BHJ.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF421DGE bed narrowPeak peaks ENCSR277DMR ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ETV1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF134DGA, ENCFF504MHQ, ENCFF956MXT 6621004 ENCODE Processing Pipeline e080afe1cdb9112a0faa67d47f8cc323 https://www.encodeproject.org/files/ENCFF421DGE/@@download/ENCFF421DGE.bed.gz hg19 released control low read depth, missing genetic modification characterization, low read depth ENCFF001UJP bed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-07-18 ENCODE 1 1 230221 Richard Myers, HAIB 364cfc5d54f7780bb402a120882dfed5 https://www.encodeproject.org/files/ENCFF001UJP/@@download/ENCFF001UJP.bed.gz hg19 archived control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF001UJQ bed broadPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-07-18 ENCODE 2 1 658908 Richard Myers, HAIB 1486ee285d629ced2ce23190677784ae https://www.encodeproject.org/files/ENCFF001UJQ/@@download/ENCFF001UJQ.bed.gz hg19 archived control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF072IAO bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-07-18 ENCODE 2 ENCFF585PFH, ENCFF620AHU 4618271 ENCODE Processing Pipeline ae10aa547fd6fab5d59fa959444e259c https://www.encodeproject.org/files/ENCFF072IAO/@@download/ENCFF072IAO.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF373HDQ bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF032EXY, ENCFF585PFH, ENCFF620AHU, ENCFF701KUD 5408876 ENCODE Processing Pipeline 6c50803f86b68e6bc9eb027fe87e58d8 https://www.encodeproject.org/files/ENCFF373HDQ/@@download/ENCFF373HDQ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF318UXE bed narrowPeak peaks ENCSR000BLI ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F6-human ENCAB000AFW DNA see document see document False 2011-07-18 ENCODE 1 ENCFF032EXY, ENCFF701KUD 2363535 ENCODE Processing Pipeline adc1ffb997c20bbb67d594a28cededba https://www.encodeproject.org/files/ENCFF318UXE/@@download/ENCFF318UXE.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample poor library complexity, insufficient read depth, severe bottlenecking ENCFF001UJT bed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB000AGA DNA see document see document False 2011-07-18 ENCODE 1 1 346418 Richard Myers, HAIB 38b1460bc8bbad5ee52956d4e78c6aba https://www.encodeproject.org/files/ENCFF001UJT/@@download/ENCFF001UJT.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF001UJU bed broadPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB000AGA DNA see document see document False 2011-07-18 ENCODE 2 1 606633 Richard Myers, HAIB d954c79cc03fe81ab436de905d2a2818 https://www.encodeproject.org/files/ENCFF001UJU/@@download/ENCFF001UJU.bed.gz hg19 archived control low read depth, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF445HQE bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB000AGA DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF400SJA, ENCFF649QHV, ENCFF701KUD 5484780 ENCODE Processing Pipeline 9d9c8373f8ae66c59eb68f0976483a33 https://www.encodeproject.org/files/ENCFF445HQE/@@download/ENCFF445HQE.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF634DSI bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB000AGA DNA see document see document False 2011-07-18 ENCODE 2 ENCFF400SJA, ENCFF701KUD 5092351 ENCODE Processing Pipeline 312cb573a1d3431bd073463f0d75d458 https://www.encodeproject.org/files/ENCFF634DSI/@@download/ENCFF634DSI.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF875HXY bed narrowPeak peaks ENCSR000BMD ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF1-human ENCAB000AGA DNA see document see document False 2011-07-18 ENCODE 1 ENCFF649QHV, ENCFF701KUD 1602818 ENCODE Processing Pipeline 81ba7eff0351c58785226e55900ea318 https://www.encodeproject.org/files/ENCFF875HXY/@@download/ENCFF875HXY.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF984IHA bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB690HQC DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF206LXZ 6308318 ENCODE Processing Pipeline f4a16dafb784377abd1f6d7f181b7dd3 https://www.encodeproject.org/files/ENCFF984IHA/@@download/ENCFF984IHA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF875LKY bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB690HQC DNA False 2018-01-26 ENCODE 1 ENCFF183PSA, ENCFF581ZJL 6223542 ENCODE Processing Pipeline 9c4fad93bb6a7dabb0c176f1437295d4 https://www.encodeproject.org/files/ENCFF875LKY/@@download/ENCFF875LKY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF501SOY bed narrowPeak peaks ENCSR628APV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB690HQC DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF183PSA, ENCFF206LXZ, ENCFF581ZJL 7141762 ENCODE Processing Pipeline ded77277a635e3730e5e1b4d8866d52f https://www.encodeproject.org/files/ENCFF501SOY/@@download/ENCFF501SOY.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF433ZFX bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB349QGP DNA False 2017-01-31 ENCODE 4 ENCFF082MPF, ENCFF834TUP 5891678 ENCODE Processing Pipeline 682e9aba849cd0eeaa24e1017405ec66 https://www.encodeproject.org/files/ENCFF433ZFX/@@download/ENCFF433ZFX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF784OAB bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB349QGP DNA False 2017-01-31 ENCODE 3 ENCFF160VXC, ENCFF839XNR 5864789 ENCODE Processing Pipeline 956d30c471c2d20a4afb3582b7d39e7d https://www.encodeproject.org/files/ENCFF784OAB/@@download/ENCFF784OAB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF324CAZ bed narrowPeak peaks ENCSR886RYH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NONO-human ENCAB349QGP DNA False 2017-01-31 ENCODE 3, 4 ENCFF082MPF, ENCFF160VXC, ENCFF834TUP, ENCFF839XNR 6957977 ENCODE Processing Pipeline 8e14f0003fe0863336bead67e79c33be https://www.encodeproject.org/files/ENCFF324CAZ/@@download/ENCFF324CAZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF001VMZ bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1633362 Michael Snyder, Stanford e3fee0039ab77f91306e2853aafa3005 https://www.encodeproject.org/files/ENCFF001VMZ/@@download/ENCFF001VMZ.bed.gz hg19 archived mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF545EHA bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF496SZR, ENCFF710NTS 4817312 ENCODE Processing Pipeline f537e875ce6fc4c5e3a7015a07e63207 https://www.encodeproject.org/files/ENCFF545EHA/@@download/ENCFF545EHA.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF264LXL bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF487UYG, ENCFF496SZR, ENCFF710NTS 4182075 ENCODE Processing Pipeline d37764996284c4fb0667c44061e5406b https://www.encodeproject.org/files/ENCFF264LXL/@@download/ENCFF264LXL.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF595QHF bed narrowPeak peaks ENCSR000EGM ChIP-seq EFO:0002067 K562 cell line Homo sapiens CTCF-human ENCAB000AFQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF487UYG, ENCFF710NTS 4688230 ENCODE Processing Pipeline be40a763bd65492b830c3cf768a541ad https://www.encodeproject.org/files/ENCFF595QHF/@@download/ENCFF595QHF.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF796QIY bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF523XHJ, ENCFF658DNV 7178952 ENCODE Processing Pipeline 5947fc9058236a998e643417ae7835fb https://www.encodeproject.org/files/ENCFF796QIY/@@download/ENCFF796QIY.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF490ZQW bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF357MEA, ENCFF523XHJ 7019384 ENCODE Processing Pipeline e0167fabd2b873b50d51fa3aec537cf9 https://www.encodeproject.org/files/ENCFF490ZQW/@@download/ENCFF490ZQW.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF124LKA bed narrowPeak peaks ENCSR801RPW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GTF2A2-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF357MEA, ENCFF523XHJ, ENCFF658DNV 7356838 ENCODE Processing Pipeline a17bdc450ae440e43075d17008430cd6 https://www.encodeproject.org/files/ENCFF124LKA/@@download/ENCFF124LKA.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking ENCFF799KLQ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB753DKR DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF608UCM, ENCFF834TUP 7302595 ENCODE Processing Pipeline 0da9304d515c27247d0165e6bc65ba65 https://www.encodeproject.org/files/ENCFF799KLQ/@@download/ENCFF799KLQ.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF797FYJ bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB753DKR DNA False 2016-09-20 ENCODE 2 ENCFF819KCS, ENCFF834TUP 7147454 ENCODE Processing Pipeline 9b5870a34fff2d07acf06a7e8eb58f90 https://www.encodeproject.org/files/ENCFF797FYJ/@@download/ENCFF797FYJ.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF770MXX bed narrowPeak peaks ENCSR908CMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB753DKR DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF608UCM, ENCFF819KCS, ENCFF834TUP 7328583 ENCODE Processing Pipeline 761e4c1c347141bdfc481974a4d75db7 https://www.encodeproject.org/files/ENCFF770MXX/@@download/ENCFF770MXX.bed.gz hg19 released mild to moderate bottlenecking missing control alignments ENCFF317YJY bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB728YTO DNA False 2016-09-01 ENCODE 1 ENCFF194ZKK, ENCFF946QHS 6910926 ENCODE Processing Pipeline bc842742eea8b78ce621aa042251e9e5 https://www.encodeproject.org/files/ENCFF317YJY/@@download/ENCFF317YJY.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF090MIJ bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB728YTO DNA False 2016-09-01 ENCODE 2 ENCFF194ZKK, ENCFF926NTQ 6779574 ENCODE Processing Pipeline 76f18f74c6f5c1d498ea8e93cac8bd80 https://www.encodeproject.org/files/ENCFF090MIJ/@@download/ENCFF090MIJ.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF319MZU bed narrowPeak peaks ENCSR130PDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB728YTO DNA False 2016-09-01 ENCODE 1, 2 ENCFF194ZKK, ENCFF926NTQ, ENCFF946QHS 7277111 ENCODE Processing Pipeline f2fde630471c906bf9bf9899216f9439 https://www.encodeproject.org/files/ENCFF319MZU/@@download/ENCFF319MZU.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF001SZS bed broadPeak peaks ENCSR000ATX ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM1A-human ENCAB000AIH DNA see document see document False 2012-08-06 ENCODE 1 ENCFF000BZW 717288 Bradley Bernstein, Broad 6d158e8a87912904f1803ba87fc4870e https://www.encodeproject.org/files/ENCFF001SZS/@@download/ENCFF001SZS.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length poor library complexity, insufficient read depth, severe bottlenecking ENCFF692UVD bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human ENCAB624FBH DNA SDS formaldehyde False 2017-03-07 ENCODE 2 ENCFF325CNX, ENCFF889DCH 5715951 ENCODE Processing Pipeline a0705a7ca020cfd57a0ac4792910889f https://www.encodeproject.org/files/ENCFF692UVD/@@download/ENCFF692UVD.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF894WLR bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human ENCAB624FBH DNA SDS formaldehyde False 2017-03-07 ENCODE 1 ENCFF103MEZ, ENCFF502LLI 5826405 ENCODE Processing Pipeline ff8b608eefb951b37466226b0b1091bd https://www.encodeproject.org/files/ENCFF894WLR/@@download/ENCFF894WLR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF310EMX bed narrowPeak peaks ENCSR220YXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens PRPF4-human ENCAB624FBH DNA SDS formaldehyde False 2017-03-07 ENCODE 1, 2 ENCFF103MEZ, ENCFF325CNX, ENCFF502LLI, ENCFF889DCH 7122157 ENCODE Processing Pipeline d4f5f5d1c4cf8cc5828d8a3357a35691 https://www.encodeproject.org/files/ENCFF310EMX/@@download/ENCFF310EMX.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, insufficient read depth, severe bottlenecking ENCFF543QKR bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF117CKT, ENCFF574IJZ, ENCFF916QKW 7033796 ENCODE Processing Pipeline 99caf292082895bdef0a2b5f5c39929e https://www.encodeproject.org/files/ENCFF543QKR/@@download/ENCFF543QKR.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF816KBT bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF574IJZ, ENCFF916QKW 6588877 ENCODE Processing Pipeline 5abbf5c5eef77f27ff04b1ba5489df94 https://www.encodeproject.org/files/ENCFF816KBT/@@download/ENCFF816KBT.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF433SFB bed narrowPeak peaks ENCSR845BCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF639-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF117CKT, ENCFF574IJZ 6612953 ENCODE Processing Pipeline e560efe96923141e1f2da95dfb04ab90 https://www.encodeproject.org/files/ENCFF433SFB/@@download/ENCFF433SFB.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF767ZAZ bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1, 2 ENCFF242FHJ, ENCFF614AZS, ENCFF891JES 7294856 ENCODE Processing Pipeline edd8d0f8099063cffdbc8f55a48a1cd1 https://www.encodeproject.org/files/ENCFF767ZAZ/@@download/ENCFF767ZAZ.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF464FVG bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1 ENCFF242FHJ, ENCFF891JES 7036651 ENCODE Processing Pipeline ccdcaf9293bb0c0d8e5b0cd30f95ece0 https://www.encodeproject.org/files/ENCFF464FVG/@@download/ENCFF464FVG.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF244XAR bed narrowPeak peaks ENCSR005NMT ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ID3-human ENCAB728YTO DNA False 2016-02-16 ENCODE 2 ENCFF242FHJ, ENCFF614AZS 7030599 ENCODE Processing Pipeline 09abb517586ae010888de294cb016b61 https://www.encodeproject.org/files/ENCFF244XAR/@@download/ENCFF244XAR.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF341OFU bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human ENCAB511DBP DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF300QTI, ENCFF457CIV, ENCFF529GUX, ENCFF951VMN 6788681 ENCODE Processing Pipeline b84cfe2d4b41b5192327001cb1baecf8 https://www.encodeproject.org/files/ENCFF341OFU/@@download/ENCFF341OFU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF255AOS bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human ENCAB511DBP DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF529GUX, ENCFF951VMN 5745510 ENCODE Processing Pipeline 5eefc812b28c3b59766e5f51524c526e https://www.encodeproject.org/files/ENCFF255AOS/@@download/ENCFF255AOS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF272ULK bed narrowPeak peaks ENCSR177DNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens FIP1L1-human ENCAB511DBP DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF300QTI, ENCFF457CIV 5730572 ENCODE Processing Pipeline 6ed5a6aad90593c15534d55f3255d91a https://www.encodeproject.org/files/ENCFF272ULK/@@download/ENCFF272ULK.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF377KNC bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF496ANK, ENCFF845UEU 6391584 ENCODE Processing Pipeline 8c8e547d257945af136b6f2be70dec7e https://www.encodeproject.org/files/ENCFF377KNC/@@download/ENCFF377KNC.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF307MIA bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF013WTE, ENCFF496ANK 6173968 ENCODE Processing Pipeline 15113e25626fbfbdb4bc89e7b87c6637 https://www.encodeproject.org/files/ENCFF307MIA/@@download/ENCFF307MIA.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF816UNQ bed narrowPeak peaks ENCSR167JBG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DIDO1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF013WTE, ENCFF496ANK, ENCFF845UEU 7019159 ENCODE Processing Pipeline 882189324763d320649004f168a954b8 https://www.encodeproject.org/files/ENCFF816UNQ/@@download/ENCFF816UNQ.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF617ITM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5690731 ENCODE Processing Pipeline 47e8e4e99c49eeeb1c8a78ebac1096c1 https://www.encodeproject.org/files/ENCFF617ITM/@@download/ENCFF617ITM.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF032IBC bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4360735 ENCODE Processing Pipeline 1e89a159174aa11f8b800978c23cddb4 https://www.encodeproject.org/files/ENCFF032IBC/@@download/ENCFF032IBC.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF230YWY bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 6600810 ENCODE Processing Pipeline 42987e044018b6ca7bb5e8f4d0fdb977 https://www.encodeproject.org/files/ENCFF230YWY/@@download/ENCFF230YWY.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF905VIC bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 1, 2 ENCFF177GPP, ENCFF335IPE, ENCFF672FSO, ENCFF879OQC 6738545 ENCODE Processing Pipeline 6b75de55d0db26aa3bc12a2c6d66f215 https://www.encodeproject.org/files/ENCFF905VIC/@@download/ENCFF905VIC.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF558QUM bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF672FSO 5904108 ENCODE Processing Pipeline b80370bc9652a73cb54822a4fd3c9a3b https://www.encodeproject.org/files/ENCFF558QUM/@@download/ENCFF558QUM.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF533MTU bed narrowPeak peaks ENCSR138FUZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB000BEA DNA False 2014-07-07 ENCODE 2 ENCFF177GPP, ENCFF879OQC 4533441 ENCODE Processing Pipeline ea922578f229cf2741b1dd492b421187 https://www.encodeproject.org/files/ENCFF533MTU/@@download/ENCFF533MTU.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, low read length ENCFF846MNB bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB996GAH DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF666BDF, ENCFF875HFU 7230895 ENCODE Processing Pipeline 7f90af1afbe228c27a92cc79aea4dfc1 https://www.encodeproject.org/files/ENCFF846MNB/@@download/ENCFF846MNB.bed.gz hg19 released ENCFF597MUA bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB996GAH DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF875HFU 6760876 ENCODE Processing Pipeline 1ae57fda98146bd40cef8c7399d85572 https://www.encodeproject.org/files/ENCFF597MUA/@@download/ENCFF597MUA.bed.gz hg19 released ENCFF295KFV bed narrowPeak peaks ENCSR322CFO ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZEB2-human ENCAB996GAH DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF666BDF 6937560 ENCODE Processing Pipeline b92d3204db03532d0f6a6daf12d76ac8 https://www.encodeproject.org/files/ENCFF295KFV/@@download/ENCFF295KFV.bed.gz hg19 released ENCFF001VMT bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 158167 Sherman Weissman, Yale 1559f0c4b290124d18d21caebe70a85e https://www.encodeproject.org/files/ENCFF001VMT/@@download/ENCFF001VMT.bed.gz hg19 archived mixed read lengths, borderline replicate concordance, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF162CMX bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF786FUF 2638510 ENCODE Processing Pipeline f5b08c1bb672d0c431f41530b2bea7fe https://www.encodeproject.org/files/ENCFF162CMX/@@download/ENCFF162CMX.bed.gz hg19 released mixed read lengths, borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF934ENB bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF786FUF, ENCFF856BHN 5035619 ENCODE Processing Pipeline 71fc661f1eec0e96a9d500014c38457b https://www.encodeproject.org/files/ENCFF934ENB/@@download/ENCFF934ENB.bed.gz hg19 released mixed read lengths, borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF987HSI bed narrowPeak peaks ENCSR000EZU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour MYC-human ENCAB000AET DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF856BHN 4571912 ENCODE Processing Pipeline 4d3e144ab7b5f8f68869361d01a844a0 https://www.encodeproject.org/files/ENCFF987HSI/@@download/ENCFF987HSI.bed.gz hg19 released mixed read lengths, borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001ULX bed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human ENCAB000AMF DNA see document see document False 2011-07-18 ENCODE 1 1 385227 Richard Myers, HAIB 1bf5eda232c5803038281953c1f5f815 https://www.encodeproject.org/files/ENCFF001ULX/@@download/ENCFF001ULX.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001ULY bed broadPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human ENCAB000AMF DNA see document see document False 2011-07-18 ENCODE 2 1 182030 Richard Myers, HAIB 28728a1c6d56dc0f6aed5a1a8a3fd40e https://www.encodeproject.org/files/ENCFF001ULY/@@download/ENCFF001ULY.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF278MWT bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human ENCAB000AMF DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF318WJA, ENCFF528NQV, ENCFF750MIM 2624623 ENCODE Processing Pipeline 071924f44c9d6645241f8906cea6aa79 https://www.encodeproject.org/files/ENCFF278MWT/@@download/ENCFF278MWT.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF738UPC bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human ENCAB000AMF DNA see document see document False 2011-07-18 ENCODE 1 ENCFF528NQV, ENCFF750MIM 4056488 ENCODE Processing Pipeline 78a14c1120d15e8f3b0da0e358904143 https://www.encodeproject.org/files/ENCFF738UPC/@@download/ENCFF738UPC.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF385JVK bed narrowPeak peaks ENCSR000BKT ChIP-seq EFO:0002067 K562 cell line Homo sapiens USF1-human ENCAB000AMF DNA see document see document False 2011-07-18 ENCODE 2 ENCFF318WJA, ENCFF750MIM 1525708 ENCODE Processing Pipeline f93457e811729a1fdec4d62809e3091c https://www.encodeproject.org/files/ENCFF385JVK/@@download/ENCFF385JVK.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, severe bottlenecking extremely low read depth ENCFF001VMP bed narrowPeak peaks ENCSR000FAH ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUN-human ENCAB000AER DNA see document see document False 2011-10-29 ENCODE 146616 Sherman Weissman, Yale 7ed01cd027c0414c49da3f4df1c41fe1 https://www.encodeproject.org/files/ENCFF001VMP/@@download/ENCFF001VMP.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF772XDS bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF220WDD, ENCFF736LGI 6670751 ENCODE Processing Pipeline b7b315993188bf1abc678d70b38144eb https://www.encodeproject.org/files/ENCFF772XDS/@@download/ENCFF772XDS.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF469YOH bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF736LGI, ENCFF812HBY 7059386 ENCODE Processing Pipeline f50f1f3780c9198b3c3454752863a295 https://www.encodeproject.org/files/ENCFF469YOH/@@download/ENCFF469YOH.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF820FCA bed narrowPeak peaks ENCSR740NPG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-BACH1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF220WDD, ENCFF736LGI, ENCFF812HBY 7235484 ENCODE Processing Pipeline b9c2f1c3f5bbf0b61f08bfc1745bb904 https://www.encodeproject.org/files/ENCFF820FCA/@@download/ENCFF820FCA.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF001VNP bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human ENCAB000AID DNA see document see document False 2011-10-29 ENCODE 1778034 Michael Snyder, Stanford ab5e64ba56a9a195b2d841a044d1d435 https://www.encodeproject.org/files/ENCFF001VNP/@@download/ENCFF001VNP.bed.gz hg19 archived borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF159IRT bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human ENCAB000AID DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF904GCT 4828402 ENCODE Processing Pipeline 1aadafa6f0c66521cb34dd178f33868b https://www.encodeproject.org/files/ENCFF159IRT/@@download/ENCFF159IRT.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF367HPL bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human ENCAB000AID DNA see document see document False 2011-10-29 ENCODE 2 ENCFF532IBJ, ENCFF710NTS 5543746 ENCODE Processing Pipeline f1705fbca0567dced7c801e7385cff4e https://www.encodeproject.org/files/ENCFF367HPL/@@download/ENCFF367HPL.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF844LUC bed narrowPeak peaks ENCSR000EGN ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUND-human ENCAB000AID DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF532IBJ, ENCFF710NTS, ENCFF904GCT 6005735 ENCODE Processing Pipeline fd8465215b193f6a6e08d11e0279e439 https://www.encodeproject.org/files/ENCFF844LUC/@@download/ENCFF844LUC.bed.gz hg19 released borderline replicate concordance, low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF572VXK bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human ENCAB000ATJ DNA False 2016-06-14 ENCODE 1 ENCFF394VWK, ENCFF581ZJL 7033899 ENCODE Processing Pipeline c0d6060bab366f6158b69de0f02afd5e https://www.encodeproject.org/files/ENCFF572VXK/@@download/ENCFF572VXK.bed.gz hg19 released ENCFF279KYF bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human ENCAB000ATJ DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF133FDG 7001273 ENCODE Processing Pipeline cd2c87ab7d899cbebf90812117c66479 https://www.encodeproject.org/files/ENCFF279KYF/@@download/ENCFF279KYF.bed.gz hg19 released ENCFF967UHQ bed narrowPeak peaks ENCSR115SMW ChIP-seq EFO:0002067 K562 cell line Homo sapiens PKNOX1-human ENCAB000ATJ DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF133FDG, ENCFF394VWK, ENCFF581ZJL 6994917 ENCODE Processing Pipeline 303f660256a14fa67dff0a4001f9a0e7 https://www.encodeproject.org/files/ENCFF967UHQ/@@download/ENCFF967UHQ.bed.gz hg19 released ENCFF106RGY bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB012ZTC DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF341UEE 6541828 ENCODE Processing Pipeline e6f5f66dd80e240ea9a45a7df2ae5940 https://www.encodeproject.org/files/ENCFF106RGY/@@download/ENCFF106RGY.bed.gz hg19 released mild to moderate bottlenecking ENCFF435YKY bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB012ZTC DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF341UEE, ENCFF389WLJ, ENCFF581ZJL 7138907 ENCODE Processing Pipeline ff67e223112fba5e51c5d05cf2e602ef https://www.encodeproject.org/files/ENCFF435YKY/@@download/ENCFF435YKY.bed.gz hg19 released mild to moderate bottlenecking ENCFF808YAS bed narrowPeak peaks ENCSR106FRG ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB012ZTC DNA False 2016-06-14 ENCODE 1 ENCFF389WLJ, ENCFF581ZJL 6588440 ENCODE Processing Pipeline b7d7d11be5c02c6de486c7485eeaf585 https://www.encodeproject.org/files/ENCFF808YAS/@@download/ENCFF808YAS.bed.gz hg19 released mild to moderate bottlenecking ENCFF590AZG bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human ENCAB959TNR DNA SDS formaldehyde False 2017-08-17 ENCODE 1 ENCFF493QSH, ENCFF923FKY 4878142 ENCODE Processing Pipeline 0107c937fd98ed8c82df77d05100ce01 https://www.encodeproject.org/files/ENCFF590AZG/@@download/ENCFF590AZG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF625VEV bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human ENCAB959TNR DNA SDS formaldehyde False 2017-08-17 ENCODE 2 ENCFF007CIX, ENCFF641CEP 4967083 ENCODE Processing Pipeline 757d5f0a5458cf6810ed9912b8eec445 https://www.encodeproject.org/files/ENCFF625VEV/@@download/ENCFF625VEV.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF234WHY bed narrowPeak peaks ENCSR836COE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM17-human ENCAB959TNR DNA SDS formaldehyde False 2017-08-17 ENCODE 1, 2 ENCFF007CIX, ENCFF493QSH, ENCFF641CEP, ENCFF923FKY 6361662 ENCODE Processing Pipeline 42fc9246aa17eb0ca09b9bd9b1b13402 https://www.encodeproject.org/files/ENCFF234WHY/@@download/ENCFF234WHY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF597QZY bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-PBX2-human ENCAB697XQW DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF232RDZ, ENCFF907MUS 5919643 ENCODE Processing Pipeline 5663b0730a149ef14f905bc402ced55b https://www.encodeproject.org/files/ENCFF597QZY/@@download/ENCFF597QZY.bed.gz hg19 released missing genetic modification characterization, low read depth characterization(s) pending review ENCFF539OHR bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-PBX2-human ENCAB697XQW DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF907MUS 5029003 ENCODE Processing Pipeline 139796eb1ef6b10e47dd7dcd30db30a3 https://www.encodeproject.org/files/ENCFF539OHR/@@download/ENCFF539OHR.bed.gz hg19 released missing genetic modification characterization, low read depth characterization(s) pending review ENCFF906WAQ bed narrowPeak peaks ENCSR633EIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-PBX2-human ENCAB697XQW DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF232RDZ 4866259 ENCODE Processing Pipeline 08d4a0372abef1262df64685abf4d357 https://www.encodeproject.org/files/ENCFF906WAQ/@@download/ENCFF906WAQ.bed.gz hg19 released missing genetic modification characterization, low read depth characterization(s) pending review ENCFF001VNO bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AIE DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF000YSI, ENCFF000YSJ 465250 Peggy Farnham, USC aa5a2a7e6d220638803775fcbf768e3e https://www.encodeproject.org/files/ENCFF001VNO/@@download/ENCFF001VNO.bed.gz hg19 archived mixed read lengths, low read depth, mild to moderate bottlenecking, low read length inconsistent mapped reads lengths insufficient read length, insufficient read depth ENCFF811QWR bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AIE DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF282OJT 6238078 ENCODE Processing Pipeline c863eb60784426b6be172bd9933ced69 https://www.encodeproject.org/files/ENCFF811QWR/@@download/ENCFF811QWR.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length inconsistent mapped reads lengths insufficient read length, insufficient read depth ENCFF007QAA bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AIE DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF282OJT, ENCFF997OPU 6759221 ENCODE Processing Pipeline d57794fde8102c7b0cb404948ea6c3d2 https://www.encodeproject.org/files/ENCFF007QAA/@@download/ENCFF007QAA.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length inconsistent mapped reads lengths insufficient read length, insufficient read depth ENCFF401VYC bed narrowPeak peaks ENCSR000EVY ChIP-seq EFO:0002067 K562 cell line Homo sapiens TRIM28-human ENCAB000AIE DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF997OPU 5607888 ENCODE Processing Pipeline eaa1674d9f3913d9ac45c3bc0d9f5f41 https://www.encodeproject.org/files/ENCFF401VYC/@@download/ENCFF401VYC.bed.gz hg19 released mixed read lengths, low read depth, mild to moderate bottlenecking, low read length inconsistent mapped reads lengths insufficient read length, insufficient read depth ENCFF361EMP bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human ENCAB348LKV DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF984NVJ 6580997 ENCODE Processing Pipeline 2299b20bf8507132afdc05f47fa6d9ae https://www.encodeproject.org/files/ENCFF361EMP/@@download/ENCFF361EMP.bed.gz hg19 released missing control alignments ENCFF830THH bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human ENCAB348LKV DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF069VLP 6570586 ENCODE Processing Pipeline 8e908668460f3de17877175ec4ff2aff https://www.encodeproject.org/files/ENCFF830THH/@@download/ENCFF830THH.bed.gz hg19 released missing control alignments ENCFF108JTM bed narrowPeak peaks ENCSR121PFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens CDC5L-human ENCAB348LKV DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF069VLP, ENCFF581ZJL, ENCFF984NVJ 7209529 ENCODE Processing Pipeline da8182b7bcf60321b0c0de562530d7b3 https://www.encodeproject.org/files/ENCFF108JTM/@@download/ENCFF108JTM.bed.gz hg19 released missing control alignments ENCFF001VOM bed narrowPeak peaks ENCSR000FAD ChIP-seq EFO:0002067 K562 cell line Homo sapiens RAD21-human ENCAB000AKG DNA see document see document False 2011-10-29 ENCODE 264510 Sherman Weissman, Yale 31e26aa8be8f75f6f0ebfbc12e2a904f https://www.encodeproject.org/files/ENCFF001VOM/@@download/ENCFF001VOM.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF189NGD bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-ATF1-human ENCAB697XQW DNA False 2016-06-14 ENCODE 2 ENCFF061QOJ, ENCFF837QKV 4759023 ENCODE Processing Pipeline 886ecf5439e7455261cced5fc2c31058 https://www.encodeproject.org/files/ENCFF189NGD/@@download/ENCFF189NGD.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF624BVW bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-ATF1-human ENCAB697XQW DNA False 2016-06-14 ENCODE 1 ENCFF061QOJ, ENCFF447TYF 5039056 ENCODE Processing Pipeline e1727509e123689203fbeea3fbb815b8 https://www.encodeproject.org/files/ENCFF624BVW/@@download/ENCFF624BVW.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF089SHU bed narrowPeak peaks ENCSR159OCC ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-ATF1-human ENCAB697XQW DNA False 2016-06-14 ENCODE 1, 2 ENCFF061QOJ, ENCFF447TYF, ENCFF837QKV 5945369 ENCODE Processing Pipeline f27db7e818966d03ddf8bbf524186d49 https://www.encodeproject.org/files/ENCFF089SHU/@@download/ENCFF089SHU.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review ENCFF001SZY bed broadPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human ENCAB000AJZ, ENCAB487VWD DNA see document see document False 2012-03-06 ENCODE 2079441 Bradley Bernstein, Broad ec05d7c145c8a558b3937ff97bcc581d https://www.encodeproject.org/files/ENCFF001SZY/@@download/ENCFF001SZY.bed.gz hg19 archived control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF629JIS bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human ENCAB000AJZ, ENCAB487VWD DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF574XYY, ENCFF968GEX 6530562 ENCODE Processing Pipeline 5fddb2dafc4ceb20398de06505d31d68 https://www.encodeproject.org/files/ENCFF629JIS/@@download/ENCFF629JIS.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing raw data in replicate insufficient replicate concordance ENCFF106WXI bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human ENCAB000AJZ, ENCAB487VWD DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF508VRU 4459629 ENCODE Processing Pipeline 28a4597f2f0ebdeb3dba733477d56e22 https://www.encodeproject.org/files/ENCFF106WXI/@@download/ENCFF106WXI.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing raw data in replicate insufficient replicate concordance ENCFF758VGA bed narrowPeak peaks ENCSR000AQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens KDM5B-human ENCAB000AJZ, ENCAB487VWD DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF508VRU, ENCFF574XYY, ENCFF968GEX 6798083 ENCODE Processing Pipeline 7e0ae144ef9fcd17e9e7f5ac2548024f https://www.encodeproject.org/files/ENCFF758VGA/@@download/ENCFF758VGA.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing raw data in replicate insufficient replicate concordance ENCFF001SYX bed broadPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human ENCAB000AEX DNA see document see document False 2012-08-06 ENCODE 448409 Bradley Bernstein, Broad 92bc493f6b791547c1f4f5dd32e0df84 https://www.encodeproject.org/files/ENCFF001SYX/@@download/ENCFF001SYX.bed.gz hg19 archived control low read depth, inconsistent platforms, mixed run types, low read depth, mixed read lengths, mild to moderate bottlenecking, moderate library complexity, low read length mismatched status, missing derived_from insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF878IXX bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human ENCAB000AEX DNA see document see document False 2012-08-06 ENCODE 1, 2 ENCFF210NXE, ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 6756256 ENCODE Processing Pipeline 182bfa3c5923a78514852b50e1040aee https://www.encodeproject.org/files/ENCFF878IXX/@@download/ENCFF878IXX.bed.gz hg19 released control low read depth, inconsistent platforms, mixed run types, low read depth, mixed read lengths, mild to moderate bottlenecking, moderate library complexity, low read length mismatched status insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF899WHU bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human ENCAB000AEX DNA see document see document False 2012-08-06 ENCODE 1 ENCFF210NXE, ENCFF574XYY 3175361 ENCODE Processing Pipeline de97e63da95381464b0585cfcc301a51 https://www.encodeproject.org/files/ENCFF899WHU/@@download/ENCFF899WHU.bed.gz hg19 released control low read depth, inconsistent platforms, mixed run types, low read depth, mixed read lengths, mild to moderate bottlenecking, moderate library complexity, low read length mismatched status insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF259GGN bed narrowPeak peaks ENCSR000ATW ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX8-human ENCAB000AEX DNA see document see document False 2012-08-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF965GBZ 5985541 ENCODE Processing Pipeline 7c06ada8c4afcca9a87c7d40ad8e052e https://www.encodeproject.org/files/ENCFF259GGN/@@download/ENCFF259GGN.bed.gz hg19 released control low read depth, inconsistent platforms, mixed run types, low read depth, mixed read lengths, mild to moderate bottlenecking, moderate library complexity, low read length mismatched status insufficient replicate concordance, poor library complexity, severe bottlenecking extremely low read depth ENCFF001TAB bed broadPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human ENCAB000AKH DNA see document see document False 2012-03-06 ENCODE 2319055 Bradley Bernstein, Broad 1e3db8d5a535a0debce601f47bc0b070 https://www.encodeproject.org/files/ENCFF001TAB/@@download/ENCFF001TAB.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing raw data in replicate, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF528ISK bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human ENCAB000AKH DNA see document see document False 2012-03-06 ENCODE 1 ENCFF178KOP, ENCFF574XYY 4417958 ENCODE Processing Pipeline d3f7cca88a9ed3ff600d59ee4106d0fb https://www.encodeproject.org/files/ENCFF528ISK/@@download/ENCFF528ISK.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF058DJL bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human ENCAB000AKH DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 6863158 ENCODE Processing Pipeline ee81955a8585a9d1a942965e8afb2823 https://www.encodeproject.org/files/ENCFF058DJL/@@download/ENCFF058DJL.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF617FLM bed narrowPeak peaks ENCSR000AQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBBP5-human ENCAB000AKH DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF178KOP, ENCFF245PJA, ENCFF574XYY, ENCFF707DNG 6978811 ENCODE Processing Pipeline 0d12bdaa6e35e22c278b4ced9e8d450c https://www.encodeproject.org/files/ENCFF617FLM/@@download/ENCFF617FLM.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF001TAF bed broadPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human ENCAB000AKO DNA see document see document False 2012-03-06 ENCODE 3537308 Bradley Bernstein, Broad 3a946e3353e1e785735deeff1cf1636f https://www.encodeproject.org/files/ENCFF001TAF/@@download/ENCFF001TAF.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate, missing derived_from poor library complexity, insufficient read depth, severe bottlenecking ENCFF643AZY bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human ENCAB000AKO DNA see document see document False 2012-03-06 ENCODE 2 ENCFF187CGT, ENCFF245PJA 3780692 ENCODE Processing Pipeline 74b066a2b4a0716e0f843177511226d9 https://www.encodeproject.org/files/ENCFF643AZY/@@download/ENCFF643AZY.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF956WWZ bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human ENCAB000AKO DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF187CGT, ENCFF245PJA, ENCFF536GLO, ENCFF574XYY 5643911 ENCODE Processing Pipeline 0e16d8a8ab45ce013458b9a714cf8e58 https://www.encodeproject.org/files/ENCFF956WWZ/@@download/ENCFF956WWZ.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF081GEA bed narrowPeak peaks ENCSR000AQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens SAP30-human ENCAB000AKO DNA see document see document False 2012-03-06 ENCODE 1 ENCFF536GLO, ENCFF574XYY 4808755 ENCODE Processing Pipeline 6f68aa14b9f8380db9f70eb8c31d042a https://www.encodeproject.org/files/ENCFF081GEA/@@download/ENCFF081GEA.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF157PBO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB857ZMJ DNA False 2016-09-27 ENCODE 1 ENCFF138LNW, ENCFF581ZJL 7197429 ENCODE Processing Pipeline 0af8663cfafe4ae8f1f42901e348933e https://www.encodeproject.org/files/ENCFF157PBO/@@download/ENCFF157PBO.bed.gz hg19 released low read depth ENCFF109VMO bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB857ZMJ DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF839GLQ 7254397 ENCODE Processing Pipeline 946487180b55d5e1e6a68781d9572952 https://www.encodeproject.org/files/ENCFF109VMO/@@download/ENCFF109VMO.bed.gz hg19 released low read depth ENCFF656WXD bed narrowPeak peaks ENCSR388QZF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB857ZMJ DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF138LNW, ENCFF581ZJL, ENCFF839GLQ 7295050 ENCODE Processing Pipeline 15bc7c82e626a458d3a5a1cbc17cce62 https://www.encodeproject.org/files/ENCFF656WXD/@@download/ENCFF656WXD.bed.gz hg19 released low read depth ENCFF001SZQ bed broadPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHI DNA see document see document False 2012-03-06 ENCODE 3260619 Bradley Bernstein, Broad 7cbe6c1860923d4839608fca47c08fe3 https://www.encodeproject.org/files/ENCFF001SZQ/@@download/ENCFF001SZQ.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing derived_from ENCFF680CDC bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHI DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF118VIO, ENCFF245PJA, ENCFF574XYY, ENCFF979MVK 5850772 ENCODE Processing Pipeline a32dfdd5ef16afbcaeeebbaccb10f1f6 https://www.encodeproject.org/files/ENCFF680CDC/@@download/ENCFF680CDC.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length ENCFF233XEO bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHI DNA see document see document False 2012-03-06 ENCODE 1 ENCFF574XYY, ENCFF979MVK 4369803 ENCODE Processing Pipeline c93be7987719bacc0e44acae6a84097b https://www.encodeproject.org/files/ENCFF233XEO/@@download/ENCFF233XEO.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length ENCFF930KIS bed narrowPeak peaks ENCSR000AQG ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB000AHI DNA see document see document False 2012-03-06 ENCODE 2 ENCFF118VIO, ENCFF245PJA 4151818 ENCODE Processing Pipeline fe651af8616d0ff1d7b529fa8ae545d9 https://www.encodeproject.org/files/ENCFF930KIS/@@download/ENCFF930KIS.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, control low read depth, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length ENCFF430YKE bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF004VBD, ENCFF180VYU 5900331 ENCODE Processing Pipeline 38b2cefa01a1fb8d6ce8bf47823a3bd7 https://www.encodeproject.org/files/ENCFF430YKE/@@download/ENCFF430YKE.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF021CLN bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF004VBD, ENCFF137WND 5666894 ENCODE Processing Pipeline 27517a3099699e324514f9bce53e8422 https://www.encodeproject.org/files/ENCFF021CLN/@@download/ENCFF021CLN.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF311BXD bed narrowPeak peaks ENCSR410DWC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PYGO2-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF004VBD, ENCFF137WND, ENCFF180VYU 6647245 ENCODE Processing Pipeline 395339ff0cb584e4cd350ac595f928b6 https://www.encodeproject.org/files/ENCFF311BXD/@@download/ENCFF311BXD.bed.gz hg19 released missing genetic modification characterization, mild to moderate bottlenecking, moderate library complexity ENCFF250VQN bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF488CVL, ENCFF744LSD 6611423 ENCODE Processing Pipeline 2b3b093652493683ee15e2cad32627d2 https://www.encodeproject.org/files/ENCFF250VQN/@@download/ENCFF250VQN.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF833HIY bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF488CVL, ENCFF744LSD, ENCFF826XVE 7268911 ENCODE Processing Pipeline 21906adc3fe5725ecb68b1b4f7718061 https://www.encodeproject.org/files/ENCFF833HIY/@@download/ENCFF833HIY.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF676RSO bed narrowPeak peaks ENCSR017GBO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-TFDP1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF744LSD, ENCFF826XVE 7060269 ENCODE Processing Pipeline ed76e1e7d3291d5c21336cc02f9ee3e3 https://www.encodeproject.org/files/ENCFF676RSO/@@download/ENCFF676RSO.bed.gz hg19 released borderline replicate concordance, low read depth, missing genetic modification characterization ENCFF603AEE bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human ENCAB503NQV DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF416JQZ, ENCFF581ZJL, ENCFF860EBI 7263264 ENCODE Processing Pipeline 96046dca93f9cb913eb857ff55dcb341 https://www.encodeproject.org/files/ENCFF603AEE/@@download/ENCFF603AEE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF802MWF bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human ENCAB503NQV DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF416JQZ 6807370 ENCODE Processing Pipeline b4209d28352bb320a3f5260cf60d74b3 https://www.encodeproject.org/files/ENCFF802MWF/@@download/ENCFF802MWF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF313WJM bed narrowPeak peaks ENCSR742TMU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF282-human ENCAB503NQV DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF860EBI 6856971 ENCODE Processing Pipeline a0f9ce9c8a662389415db892470f3db3 https://www.encodeproject.org/files/ENCFF313WJM/@@download/ENCFF313WJM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF214PFV bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human ENCAB021IRD DNA False 2016-09-01 ENCODE 1 ENCFF072EMM, ENCFF581ZJL 6498662 ENCODE Processing Pipeline 3f11270a3c900c60b30b8dba11743b2a https://www.encodeproject.org/files/ENCFF214PFV/@@download/ENCFF214PFV.bed.gz hg19 released borderline replicate concordance ENCFF277IZH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human ENCAB021IRD DNA False 2016-09-01 ENCODE 2 ENCFF051LWI, ENCFF581KEJ 6638468 ENCODE Processing Pipeline 36d9bfe21968a5410a8c3ac308937f8d https://www.encodeproject.org/files/ENCFF277IZH/@@download/ENCFF277IZH.bed.gz hg19 released borderline replicate concordance ENCFF898TYH bed narrowPeak peaks ENCSR567JEU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YBX3-human ENCAB021IRD DNA False 2016-09-01 ENCODE 1, 2 ENCFF051LWI, ENCFF072EMM, ENCFF581KEJ, ENCFF581ZJL 7171522 ENCODE Processing Pipeline 70feaec10f89eef19f742fbc30a0c91b https://www.encodeproject.org/files/ENCFF898TYH/@@download/ENCFF898TYH.bed.gz hg19 released borderline replicate concordance ENCFF010BGE bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF121MMO, ENCFF951BLJ 6256959 ENCODE Processing Pipeline 9b284f55a568bf23aa152ea8203a265a https://www.encodeproject.org/files/ENCFF010BGE/@@download/ENCFF010BGE.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF758WOZ bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF107DVQ, ENCFF121MMO, ENCFF951BLJ 6694983 ENCODE Processing Pipeline 107d4f48915dc6bd8f07d9fa97464d78 https://www.encodeproject.org/files/ENCFF758WOZ/@@download/ENCFF758WOZ.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF813QPT bed narrowPeak peaks ENCSR178NTX ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CUX1-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF107DVQ, ENCFF951BLJ 6170472 ENCODE Processing Pipeline 4d42ef9f5b09bb4ed91ffe708bb6f317 https://www.encodeproject.org/files/ENCFF813QPT/@@download/ENCFF813QPT.bed.gz hg19 released control low read depth, missing genetic modification characterization ENCFF723YNA bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human ENCAB322DID DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 6358841 ENCODE Processing Pipeline 71f148421e311b84398fd8449b30f078 https://www.encodeproject.org/files/ENCFF723YNA/@@download/ENCFF723YNA.bed.gz hg19 released mild to moderate bottlenecking ENCFF866VBI bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human ENCAB322DID DNA False 2017-09-28 ENCODE 1 ENCFF100APY, ENCFF262CJE, ENCFF506DFV 6718826 ENCODE Processing Pipeline 462aff753a325d16f959eb396e6e026a https://www.encodeproject.org/files/ENCFF866VBI/@@download/ENCFF866VBI.bed.gz hg19 released mild to moderate bottlenecking ENCFF341FSC bed narrowPeak peaks ENCSR699PVC ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBFA2T2-human ENCAB322DID DNA False 2017-09-28 ENCODE 1, 2 ENCFF100APY, ENCFF262CJE, ENCFF506DFV, ENCFF860GRK 7087517 ENCODE Processing Pipeline 6048b745d886d6bb1a9cbeb7a355c4f1 https://www.encodeproject.org/files/ENCFF341FSC/@@download/ENCFF341FSC.bed.gz hg19 released mild to moderate bottlenecking ENCFF041EID bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human ENCAB000AMQ DNA False 2016-08-24 ENCODE 1 ENCFF335IPE, ENCFF708LOC 3776183 ENCODE Processing Pipeline fef6dda7aa2bb57a75863df1649746b9 https://www.encodeproject.org/files/ENCFF041EID/@@download/ENCFF041EID.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF248AZH bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human ENCAB000AMQ DNA False 2016-08-24 ENCODE 2 ENCFF621GUP, ENCFF879OQC 4746442 ENCODE Processing Pipeline 920cb17166e327ea21f13d89051b2cd1 https://www.encodeproject.org/files/ENCFF248AZH/@@download/ENCFF248AZH.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF469ORR bed narrowPeak peaks ENCSR907JPB ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZMIZ1-human ENCAB000AMQ DNA False 2016-08-24 ENCODE 1, 2 ENCFF335IPE, ENCFF621GUP, ENCFF708LOC, ENCFF879OQC 5411942 ENCODE Processing Pipeline 475b1cc58fd630bdb84cb1586163e4a7 https://www.encodeproject.org/files/ENCFF469ORR/@@download/ENCFF469ORR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF094YIY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB744GOI DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF333NCC 6297379 ENCODE Processing Pipeline 642dae0844a0e8d8dd075f82b553215f https://www.encodeproject.org/files/ENCFF094YIY/@@download/ENCFF094YIY.bed.gz hg19 released low read depth ENCFF501DZY bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB744GOI DNA False 2016-06-14 ENCODE 1 ENCFF568FRV, ENCFF581ZJL 6216671 ENCODE Processing Pipeline 930752e7e889e06e0e3a436fa59bb5ef https://www.encodeproject.org/files/ENCFF501DZY/@@download/ENCFF501DZY.bed.gz hg19 released low read depth ENCFF186VAU bed narrowPeak peaks ENCSR113LAS ChIP-seq EFO:0002067 K562 cell line Homo sapiens MTA2-human ENCAB744GOI DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF333NCC, ENCFF568FRV, ENCFF581ZJL 7097726 ENCODE Processing Pipeline d7c9ad3f216460e2d0dd721db5ec966e https://www.encodeproject.org/files/ENCFF186VAU/@@download/ENCFF186VAU.bed.gz hg19 released low read depth ENCFF357VCS bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF187NQM, ENCFF267TAG 7293894 ENCODE Processing Pipeline 518350f213fd7e62dcdac573752d7de7 https://www.encodeproject.org/files/ENCFF357VCS/@@download/ENCFF357VCS.bed.gz hg19 released missing genetic modification characterization ENCFF530EDL bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF267TAG, ENCFF512JPN 7255330 ENCODE Processing Pipeline 6633f9702b47a79ee6cd79f14b0037b6 https://www.encodeproject.org/files/ENCFF530EDL/@@download/ENCFF530EDL.bed.gz hg19 released missing genetic modification characterization ENCFF188IJE bed narrowPeak peaks ENCSR591CCL ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF512-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF187NQM, ENCFF267TAG, ENCFF512JPN 7382572 ENCODE Processing Pipeline d7a9ee4b6cd62d3ecdfb0efc045880bd https://www.encodeproject.org/files/ENCFF188IJE/@@download/ENCFF188IJE.bed.gz hg19 released missing genetic modification characterization ENCFF451ZHQ bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human ENCAB704OHJ DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF767WRS, ENCFF960FUD 7198629 ENCODE Processing Pipeline f047b4467e442222518375c0d8c8d972 https://www.encodeproject.org/files/ENCFF451ZHQ/@@download/ENCFF451ZHQ.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF527OVH bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human ENCAB704OHJ DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF767WRS 7016503 ENCODE Processing Pipeline 4d1f0ebce3bbc49cd26c4b43daf8ae07 https://www.encodeproject.org/files/ENCFF527OVH/@@download/ENCFF527OVH.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF566QTT bed narrowPeak peaks ENCSR138YYY ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPB1-human ENCAB704OHJ DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF960FUD 7002875 ENCODE Processing Pipeline 600fb82586199d1124e579a2893f3444 https://www.encodeproject.org/files/ENCFF566QTT/@@download/ENCFF566QTT.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF001UMH bed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human ENCAB000AMM DNA see document see document False 2011-07-18 ENCODE 1 1 152029 Richard Myers, HAIB a638098859d8abb82f51742a716f29d7 https://www.encodeproject.org/files/ENCFF001UMH/@@download/ENCFF001UMH.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UMI bed broadPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human ENCAB000AMM DNA see document see document False 2011-07-18 ENCODE 2 1 603742 Richard Myers, HAIB d3ee2bb1e8d1e70d5ce927e6acd95d20 https://www.encodeproject.org/files/ENCFF001UMI/@@download/ENCFF001UMI.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF412YTK bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human ENCAB000AMM DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF859KGS 4043931 ENCODE Processing Pipeline d6b3c6ecd2f902f4c5f59525622b62da https://www.encodeproject.org/files/ENCFF412YTK/@@download/ENCFF412YTK.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF101JWH bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human ENCAB000AMM DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF750MIM, ENCFF859KGS, ENCFF920CCJ 5825370 ENCODE Processing Pipeline b2c53b5b3a7acccd8ff47083c3ffb2dc https://www.encodeproject.org/files/ENCFF101JWH/@@download/ENCFF101JWH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF644MVI bed narrowPeak peaks ENCSR000BME ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZBTB7A-human ENCAB000AMM DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF920CCJ 5401132 ENCODE Processing Pipeline 2d9ed99c4264b18ec0eb5cc5200d7a3d https://www.encodeproject.org/files/ENCFF644MVI/@@download/ENCFF644MVI.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF259GFJ bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB211EDR DNA False 2017-11-20 ENCODE 1 ENCFF098RVJ, ENCFF581ZJL 6608166 ENCODE Processing Pipeline be6550ae5866d12ab52518bf4a4365df https://www.encodeproject.org/files/ENCFF259GFJ/@@download/ENCFF259GFJ.bed.gz hg19 released experiment not submitted to GEO ENCFF959BCM bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB211EDR DNA False 2017-11-20 ENCODE 3 ENCFF051LWI, ENCFF468MXQ, ENCFF581ZJL 6867581 ENCODE Processing Pipeline 39927921f223a5a170cd617cb04b0f8f https://www.encodeproject.org/files/ENCFF959BCM/@@download/ENCFF959BCM.bed.gz hg19 released experiment not submitted to GEO ENCFF301MWW bed narrowPeak peaks ENCSR635EXI ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZSCAN29-human ENCAB211EDR DNA False 2017-11-20 ENCODE 1, 3 ENCFF051LWI, ENCFF098RVJ, ENCFF468MXQ, ENCFF581ZJL 7188444 ENCODE Processing Pipeline 7b522e0e03771150f6a44cee014b09d0 https://www.encodeproject.org/files/ENCFF301MWW/@@download/ENCFF301MWW.bed.gz hg19 released experiment not submitted to GEO ENCFF001UIW bed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-07-18 ENCODE 1 1 177639 Richard Myers, HAIB 6e8f85d3ab428ef95e3382237b1b2419 https://www.encodeproject.org/files/ENCFF001UIW/@@download/ENCFF001UIW.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UIY bed broadPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-07-18 ENCODE 2 1 218408 Richard Myers, HAIB f8be948c85a0facd73902d03412464c0 https://www.encodeproject.org/files/ENCFF001UIY/@@download/ENCFF001UIY.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF015HEH bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-07-18 ENCODE 1 ENCFF747HGM, ENCFF750MIM 4316404 ENCODE Processing Pipeline 8207f76f290825f56931668fde6dc792 https://www.encodeproject.org/files/ENCFF015HEH/@@download/ENCFF015HEH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF251XOI bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF747HGM, ENCFF750MIM, ENCFF849WYX 5158904 ENCODE Processing Pipeline a6af902871f1bad066237d162797d318 https://www.encodeproject.org/files/ENCFF251XOI/@@download/ENCFF251XOI.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF146YXX bed narrowPeak peaks ENCSR000BNU ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF3-human ENCAB000ADZ DNA see document see document False 2011-07-18 ENCODE 2 ENCFF750MIM, ENCFF849WYX 937915 ENCODE Processing Pipeline 5a4600cdc6485de1e8feaea493b849e8 https://www.encodeproject.org/files/ENCFF146YXX/@@download/ENCFF146YXX.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF001VPA bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALP DNA see document see document False 2012-05-14 ENCODE 694993 Michael Snyder, Stanford 1a5b0eb668f8ebaa2382eefc709dc80f https://www.encodeproject.org/files/ENCFF001VPA/@@download/ENCFF001VPA.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF570BGF bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALP DNA see document see document False 2012-05-14 ENCODE 1 ENCFF676WXJ, ENCFF710NTS 5126978 ENCODE Processing Pipeline 3dbc54e6e80b80390a000d4502766d78 https://www.encodeproject.org/files/ENCFF570BGF/@@download/ENCFF570BGF.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF029WBH bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALP DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF645ZSW, ENCFF676WXJ, ENCFF710NTS 6005378 ENCODE Processing Pipeline fa7e9ed24a7267861d7c2a5a0676614c https://www.encodeproject.org/files/ENCFF029WBH/@@download/ENCFF029WBH.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF148FBK bed narrowPeak peaks ENCSR000EGA ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALP DNA see document see document False 2012-05-14 ENCODE 2 ENCFF645ZSW, ENCFF710NTS 5143978 ENCODE Processing Pipeline dcb2ca543a2f81c300abae00838438a4 https://www.encodeproject.org/files/ENCFF148FBK/@@download/ENCFF148FBK.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF487JYD bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF053ULL, ENCFF804GZU 6198220 ENCODE Processing Pipeline 149c202090cd8c1452ad189901f54d15 https://www.encodeproject.org/files/ENCFF487JYD/@@download/ENCFF487JYD.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF423GZH bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF053ULL, ENCFF500GNW 6055436 ENCODE Processing Pipeline 6b81da2f832fd3de56ca5db061472997 https://www.encodeproject.org/files/ENCFF423GZH/@@download/ENCFF423GZH.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF590NAP bed narrowPeak peaks ENCSR920ASP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZFX-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF053ULL, ENCFF500GNW, ENCFF804GZU 6747513 ENCODE Processing Pipeline 5f5dfbcf75ed5937e8532fe3b8b44953 https://www.encodeproject.org/files/ENCFF590NAP/@@download/ENCFF590NAP.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF769MWV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human ENCAB649NDD DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF477SGV, ENCFF551QCK 4718222 ENCODE Processing Pipeline 19256ba74f45415382b6ea8f51a7244a https://www.encodeproject.org/files/ENCFF769MWV/@@download/ENCFF769MWV.bed.gz hg19 released low read depth, low read length ENCFF622THV bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human ENCAB649NDD DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF546AFS, ENCFF705ZEH 4834476 ENCODE Processing Pipeline a78791463de6509ad4f36b0cacb53445 https://www.encodeproject.org/files/ENCFF622THV/@@download/ENCFF622THV.bed.gz hg19 released low read depth, low read length ENCFF626AAZ bed narrowPeak peaks ENCSR754ZHU ChIP-seq EFO:0002067 K562 cell line Homo sapiens SNRNP70-human ENCAB649NDD DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF477SGV, ENCFF546AFS, ENCFF551QCK, ENCFF705ZEH 6248155 ENCODE Processing Pipeline 3c16a9fa34574cb39077b028da90d179 https://www.encodeproject.org/files/ENCFF626AAZ/@@download/ENCFF626AAZ.bed.gz hg19 released low read depth, low read length ENCFF001SZC bed broadPeak peaks ENCSR000AQE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EZH2-human ENCAB000AGH DNA see document see document False 2012-03-06 ENCODE 942460 Bradley Bernstein, Broad a289d82fada7e12137bc7657e207a543 https://www.encodeproject.org/files/ENCFF001SZC/@@download/ENCFF001SZC.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length missing derived_from ENCFF433KJT bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human ENCAB698BTS DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF456BYT, ENCFF768SVS 6278109 ENCODE Processing Pipeline 8949bddbdc88054247ad6b4ee81e1e64 https://www.encodeproject.org/files/ENCFF433KJT/@@download/ENCFF433KJT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF343RFS bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human ENCAB698BTS DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF768SVS, ENCFF813JWE 7138041 ENCODE Processing Pipeline f89a0bb73afe906b16e3e34f10d11a16 https://www.encodeproject.org/files/ENCFF343RFS/@@download/ENCFF343RFS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF657LPF bed narrowPeak peaks ENCSR112RNT ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPLL-human ENCAB698BTS DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF321CYT, ENCFF813JWE 6083473 ENCODE Processing Pipeline bce63864da546534586631a4ae6e039a https://www.encodeproject.org/files/ENCFF657LPF/@@download/ENCFF657LPF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF688JRI bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB295BCT DNA False 2016-09-27 ENCODE 2 ENCFF834TUP, ENCFF974JDO 6894888 ENCODE Processing Pipeline 793d3c3aaad36a9eb226e1d4420a0d34 https://www.encodeproject.org/files/ENCFF688JRI/@@download/ENCFF688JRI.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF071TPY bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB295BCT DNA False 2016-09-27 ENCODE 1 ENCFF160VXC, ENCFF720ZIN 6730526 ENCODE Processing Pipeline ed84f45cddfdff51c39de9b315cdc819 https://www.encodeproject.org/files/ENCFF071TPY/@@download/ENCFF071TPY.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF854NST bed narrowPeak peaks ENCSR334HSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF318-human ENCAB295BCT DNA False 2016-09-27 ENCODE 1, 2 ENCFF160VXC, ENCFF720ZIN, ENCFF834TUP, ENCFF974JDO 7193210 ENCODE Processing Pipeline f3fb390effebfb531d644a18850a92db https://www.encodeproject.org/files/ENCFF854NST/@@download/ENCFF854NST.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF001SZX bed broadPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human ENCAB000AJX, ENCAB757LUG DNA see document see document False 2012-03-06 ENCODE 912359 Bradley Bernstein, Broad ac17c190d3ee41737ebe9351f8e5f310 https://www.encodeproject.org/files/ENCFF001SZX/@@download/ENCFF001SZX.bed.gz hg19 archived inconsistent platforms, mixed run types, mild to moderate bottlenecking, low read length, moderate library complexity missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF739TWP bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human ENCAB000AJX, ENCAB757LUG DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 6501404 ENCODE Processing Pipeline 860d76c0cd5d8dcce10658f8a1dcfaa6 https://www.encodeproject.org/files/ENCFF739TWP/@@download/ENCFF739TWP.bed.gz hg19 released inconsistent platforms, mixed run types, mild to moderate bottlenecking, low read length, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF192RQZ bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human ENCAB000AJX, ENCAB757LUG DNA see document see document False 2012-03-06 ENCODE 2, 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP, ENCFF845EFA 6995318 ENCODE Processing Pipeline 10501d436f31125cd55d5c35f81a0041 https://www.encodeproject.org/files/ENCFF192RQZ/@@download/ENCFF192RQZ.bed.gz hg19 released inconsistent platforms, mixed run types, mild to moderate bottlenecking, low read length, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF430CBL bed narrowPeak peaks ENCSR000AQH ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF8-human ENCAB000AJX, ENCAB757LUG DNA see document see document False 2012-03-06 ENCODE 3 ENCFF121RMK, ENCFF245PJA, ENCFF319GFP 5748212 ENCODE Processing Pipeline ca3f630f6788e9fdfc49f5649995d014 https://www.encodeproject.org/files/ENCFF430CBL/@@download/ENCFF430CBL.bed.gz hg19 released inconsistent platforms, mixed run types, mild to moderate bottlenecking, low read length, moderate library complexity missing raw data in replicate insufficient replicate concordance ENCFF627NVL bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB521XDP DNA False 2016-07-08 ENCODE 2 ENCFF051LWI, ENCFF652SID 6612322 ENCODE Processing Pipeline c94f36c4657842187a9a2e757738c0f2 https://www.encodeproject.org/files/ENCFF627NVL/@@download/ENCFF627NVL.bed.gz hg19 released antibody characterized with exemption ENCFF436EEZ bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB521XDP DNA False 2016-07-08 ENCODE 1 ENCFF581ZJL, ENCFF702MHE 6757441 ENCODE Processing Pipeline 43e8a65d9d33f9e5bf8e0dfaccc72e29 https://www.encodeproject.org/files/ENCFF436EEZ/@@download/ENCFF436EEZ.bed.gz hg19 released antibody characterized with exemption ENCFF777QKF bed narrowPeak peaks ENCSR189TRZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB521XDP DNA False 2016-07-08 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF652SID, ENCFF702MHE 7214303 ENCODE Processing Pipeline 38df1b0cb28d70f686b34b3b8802e292 https://www.encodeproject.org/files/ENCFF777QKF/@@download/ENCFF777QKF.bed.gz hg19 released antibody characterized with exemption ENCFF001TAE bed broadPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human ENCAB000AKT DNA see document see document False 2012-08-06 ENCODE 365700 Bradley Bernstein, Broad be0ef94bb51b4846a20b963ae52f7ed6 https://www.encodeproject.org/files/ENCFF001TAE/@@download/ENCFF001TAE.bed.gz hg19 archived control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing derived_from ENCFF667ZBS bed narrowPeak peaks ENCSR000AUB ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human ENCAB000AKT DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF650RQR 4013435 ENCODE Processing Pipeline de80fc1248efcb8b0603f4c7ab04ce2f https://www.encodeproject.org/files/ENCFF667ZBS/@@download/ENCFF667ZBS.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length ENCFF188GHO bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB625ERS DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF928REO 6860119 ENCODE Processing Pipeline fd59c3000d29184e8110f9bdc7c6ecc8 https://www.encodeproject.org/files/ENCFF188GHO/@@download/ENCFF188GHO.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF451DBC bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB625ERS DNA False 2016-04-22 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF599UMI, ENCFF928REO 7143490 ENCODE Processing Pipeline 4e4e927c22ff9106926871ad25ca7a9f https://www.encodeproject.org/files/ENCFF451DBC/@@download/ENCFF451DBC.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF158PJI bed narrowPeak peaks ENCSR508DQA ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB625ERS DNA False 2016-04-22 ENCODE 1 ENCFF581ZJL, ENCFF599UMI 6292302 ENCODE Processing Pipeline 5817bd2bc47a0d98ce9dbc84ff763fe4 https://www.encodeproject.org/files/ENCFF158PJI/@@download/ENCFF158PJI.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF260MCD bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human ENCAB353TGR DNA False 2016-09-27 ENCODE 1 ENCFF508SEX, ENCFF581ZJL 6644738 ENCODE Processing Pipeline 38fc5094fedb938a0cd694b3d2ffd88e https://www.encodeproject.org/files/ENCFF260MCD/@@download/ENCFF260MCD.bed.gz hg19 released ENCFF262RPX bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human ENCAB353TGR DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF581ZJL, ENCFF621JTB 7072773 ENCODE Processing Pipeline ed8b89f25a858edca351d442df02f59a https://www.encodeproject.org/files/ENCFF262RPX/@@download/ENCFF262RPX.bed.gz hg19 released ENCFF530ETK bed narrowPeak peaks ENCSR990AZC ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM3-human ENCAB353TGR DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF508SEX, ENCFF581ZJL, ENCFF621JTB 7233376 ENCODE Processing Pipeline 200d67b2045a04d5547c856cde94ac0b https://www.encodeproject.org/files/ENCFF530ETK/@@download/ENCFF530ETK.bed.gz hg19 released ENCFF170VIW bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF132XOC, ENCFF587NFZ 6469689 ENCODE Processing Pipeline da1a2393510932d7e6a5e9280790a881 https://www.encodeproject.org/files/ENCFF170VIW/@@download/ENCFF170VIW.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF369MAB bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF124TQP, ENCFF587NFZ 6413409 ENCODE Processing Pipeline 3c8dc9701c59e3459d05d0c85a53f7e7 https://www.encodeproject.org/files/ENCFF369MAB/@@download/ENCFF369MAB.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF345KFF bed narrowPeak peaks ENCSR647ZXA ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MEF2D-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF124TQP, ENCFF132XOC, ENCFF587NFZ 7050591 ENCODE Processing Pipeline ff61621cea4897c161f8b69f2d4ea21c https://www.encodeproject.org/files/ENCFF345KFF/@@download/ENCFF345KFF.bed.gz hg19 released missing genetic modification characterization, low read depth missing control alignments ENCFF001VLX bed narrowPeak peaks ENCSR000DNZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF1-human ENCAB000ASR DNA see document see document False 2012-05-14 ENCODE 834029 Kevin Struhl, HMS 95c2925ddbe06732dab3375c07d57fd0 https://www.encodeproject.org/files/ENCFF001VLX/@@download/ENCFF001VLX.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001UKZ bed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKS DNA see document see document False 2011-07-18 ENCODE 1 1 41434 Richard Myers, HAIB 3370f7be2274c325532db967868d8f3d https://www.encodeproject.org/files/ENCFF001UKZ/@@download/ENCFF001UKZ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, control insufficient read depth ENCFF001ULA bed broadPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKS DNA see document see document False 2011-07-18 ENCODE 2 1 211027 Richard Myers, HAIB f5e879a43aabcb257b8553eed167e53a https://www.encodeproject.org/files/ENCFF001ULA/@@download/ENCFF001ULA.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, control insufficient read depth ENCFF638TWN bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKS DNA see document see document False 2011-07-18 ENCODE 1 ENCFF154ZWB, ENCFF750MIM 90874 ENCODE Processing Pipeline c715cc4d1528dbbe6f962990cf69f86a https://www.encodeproject.org/files/ENCFF638TWN/@@download/ENCFF638TWN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth ENCFF453GLP bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKS DNA see document see document False 2011-07-18 ENCODE 2 ENCFF696ANF, ENCFF750MIM 4405161 ENCODE Processing Pipeline 51309dfc21ce52b1d5332ff936e37bda https://www.encodeproject.org/files/ENCFF453GLP/@@download/ENCFF453GLP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth ENCFF701TJB bed narrowPeak peaks ENCSR000BLR ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKS DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF154ZWB, ENCFF696ANF, ENCFF750MIM 4769264 ENCODE Processing Pipeline cf762b5e0bd7400d736a250250fb7ef8 https://www.encodeproject.org/files/ENCFF701TJB/@@download/ENCFF701TJB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth ENCFF032UMZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human ENCAB543ANT DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF948RVR 6940315 ENCODE Processing Pipeline 7fe98b1db8a51da117e0bb6035488924 https://www.encodeproject.org/files/ENCFF032UMZ/@@download/ENCFF032UMZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF650HMR bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human ENCAB543ANT DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF262STC, ENCFF581ZJL, ENCFF948RVR 7268761 ENCODE Processing Pipeline 95bafa47f2faeff7d2d871566b7a397f https://www.encodeproject.org/files/ENCFF650HMR/@@download/ENCFF650HMR.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF021DHZ bed narrowPeak peaks ENCSR085QEV ChIP-seq EFO:0002067 K562 cell line Homo sapiens NBN-human ENCAB543ANT DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF262STC 7016934 ENCODE Processing Pipeline 2b207983b554dccb298e6a982558fbca https://www.encodeproject.org/files/ENCFF021DHZ/@@download/ENCFF021DHZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF921XMX bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human ENCAB306IYD DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF258YDE, ENCFF581ZJL, ENCFF676XEB 7239819 ENCODE Processing Pipeline 7723316ad3320154f372a4bf52e89296 https://www.encodeproject.org/files/ENCFF921XMX/@@download/ENCFF921XMX.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF548UHD bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human ENCAB306IYD DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF676XEB 6799104 ENCODE Processing Pipeline e68b977e6644a4f73fac05bed4c8dc48 https://www.encodeproject.org/files/ENCFF548UHD/@@download/ENCFF548UHD.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF970NGB bed narrowPeak peaks ENCSR145TSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens ATF4-human ENCAB306IYD DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF258YDE 7015068 ENCODE Processing Pipeline 08c59c7cf79bbb2336108666f30034c4 https://www.encodeproject.org/files/ENCFF970NGB/@@download/ENCFF970NGB.bed.gz hg19 released mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF438RUW bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human ENCAB956LLD DNA False 2016-06-14 ENCODE 1 ENCFF042HRP, ENCFF581ZJL 7190369 ENCODE Processing Pipeline 29979f3a75ae2c25cf3e69c12045ab0c https://www.encodeproject.org/files/ENCFF438RUW/@@download/ENCFF438RUW.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption ENCFF601IZU bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human ENCAB956LLD DNA False 2016-06-14 ENCODE 1, 2 ENCFF042HRP, ENCFF051LWI, ENCFF465ENL, ENCFF581ZJL 7275622 ENCODE Processing Pipeline b5cf75c692c3f8c8a6ecae96896aa146 https://www.encodeproject.org/files/ENCFF601IZU/@@download/ENCFF601IZU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption ENCFF648JAT bed narrowPeak peaks ENCSR426MDV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MIER1-human ENCAB956LLD DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF465ENL 6825636 ENCODE Processing Pipeline 573107bfc0e8e29ef5b25a41ef1594c0 https://www.encodeproject.org/files/ENCFF648JAT/@@download/ENCFF648JAT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption ENCFF001VPL bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human ENCAB000AMR DNA see document see document False 2011-10-29 ENCODE 1294981 Michael Snyder, Stanford 259dc65d0d017eadee8cce89dddddf24 https://www.encodeproject.org/files/ENCFF001VPL/@@download/ENCFF001VPL.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF178ANU bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human ENCAB000AMR DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF872IPB 4771447 ENCODE Processing Pipeline c491087f20ab9c04bfa876874b59502c https://www.encodeproject.org/files/ENCFF178ANU/@@download/ENCFF178ANU.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF971SGR bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human ENCAB000AMR DNA see document see document False 2011-10-29 ENCODE 1 ENCFF347FTA, ENCFF710NTS 5103569 ENCODE Processing Pipeline db8c61fb2f09825b33c89d66fc02a24a https://www.encodeproject.org/files/ENCFF971SGR/@@download/ENCFF971SGR.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF984KWO bed narrowPeak peaks ENCSR000EGP ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF143-human ENCAB000AMR DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF347FTA, ENCFF710NTS, ENCFF872IPB 2847576 ENCODE Processing Pipeline f52f093100b1ca7d42534ce5b44d7c9c https://www.encodeproject.org/files/ENCFF984KWO/@@download/ENCFF984KWO.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF642AZQ bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1 ENCFF469YUW, ENCFF800BIH 6908161 ENCODE Processing Pipeline df619303cb7cd7dd5aa205ccf8675504 https://www.encodeproject.org/files/ENCFF642AZQ/@@download/ENCFF642AZQ.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF138QHW bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human ENCAB728YTO DNA False 2016-08-24 ENCODE 2 ENCFF469YUW, ENCFF658ADO 6967604 ENCODE Processing Pipeline 3332e75add43e3f65ea6492367248cb1 https://www.encodeproject.org/files/ENCFF138QHW/@@download/ENCFF138QHW.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF923FBF bed narrowPeak peaks ENCSR400FSM ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-POLR2H-human ENCAB728YTO DNA False 2016-08-24 ENCODE 1, 2 ENCFF469YUW, ENCFF658ADO, ENCFF800BIH 7258022 ENCODE Processing Pipeline 7635e09ee8a1201a82a81ebfe3ccb1e5 https://www.encodeproject.org/files/ENCFF923FBF/@@download/ENCFF923FBF.bed.gz hg19 released control low read depth, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF634SVO bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human ENCAB000BFB DNA False 2017-03-16 ENCODE 4 ENCFF262CJE, ENCFF506DFV, ENCFF637PNR 6429786 ENCODE Processing Pipeline e0d3f9a83e1cb435065912e0a3b08a02 https://www.encodeproject.org/files/ENCFF634SVO/@@download/ENCFF634SVO.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF197MJO bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human ENCAB000BFB DNA False 2017-03-16 ENCODE 3 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ 5923774 ENCODE Processing Pipeline 121bb1bdc84e093168dc663ffbb01560 https://www.encodeproject.org/files/ENCFF197MJO/@@download/ENCFF197MJO.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF801LNJ bed narrowPeak peaks ENCSR670JDQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens RB1-human ENCAB000BFB DNA False 2017-03-16 ENCODE 3, 4 ENCFF262CJE, ENCFF506DFV, ENCFF594JBQ, ENCFF637PNR 7009580 ENCODE Processing Pipeline b57ed07d810b8a2fde28215fecfdd12b https://www.encodeproject.org/files/ENCFF801LNJ/@@download/ENCFF801LNJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF981LHO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF124STW, ENCFF860REV 5953388 ENCODE Processing Pipeline 20b265d3d51a939bbb83700dca54c959 https://www.encodeproject.org/files/ENCFF981LHO/@@download/ENCFF981LHO.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF351JUL bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF124STW, ENCFF400FDW, ENCFF860REV 6972262 ENCODE Processing Pipeline e0d0cbad321bdcda11cb355184863281 https://www.encodeproject.org/files/ENCFF351JUL/@@download/ENCFF351JUL.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF069PPO bed narrowPeak peaks ENCSR314BBS ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-PTTG1-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF124STW, ENCFF400FDW 6175393 ENCODE Processing Pipeline 6641e81b3eae2a5e024312e55a53bba0 https://www.encodeproject.org/files/ENCFF069PPO/@@download/ENCFF069PPO.bed.gz hg19 released missing genetic modification characterization, low read depth, mild to moderate bottlenecking ENCFF186JXU bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 4948567 ENCODE Processing Pipeline 265da055467795a7eaa2550983ccbd02 https://www.encodeproject.org/files/ENCFF186JXU/@@download/ENCFF186JXU.bed.gz hg19 released borderline replicate concordance, low read length ENCFF594TUH bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 6397068 ENCODE Processing Pipeline 82273fc91909318a5c18f1a98af9a88f https://www.encodeproject.org/files/ENCFF594TUH/@@download/ENCFF594TUH.bed.gz hg19 released borderline replicate concordance, low read length ENCFF841ZJM bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 4896452 ENCODE Processing Pipeline aaa5da43b96e4c70a786ea337a51f0ee https://www.encodeproject.org/files/ENCFF841ZJM/@@download/ENCFF841ZJM.bed.gz hg19 released borderline replicate concordance, low read length ENCFF533JJE bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 2 ENCFF355RGO, ENCFF879OQC 5168158 ENCODE Processing Pipeline 0a40f43f66e87af77fa6b37d4e25d8ca https://www.encodeproject.org/files/ENCFF533JJE/@@download/ENCFF533JJE.bed.gz hg19 archived borderline replicate concordance, low read length ENCFF585JRW bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 1, 2 ENCFF136XHP, ENCFF335IPE, ENCFF355RGO, ENCFF879OQC 6606695 ENCODE Processing Pipeline 6bf3d8f04632c683cd7e18b182fce60b https://www.encodeproject.org/files/ENCFF585JRW/@@download/ENCFF585JRW.bed.gz hg19 archived borderline replicate concordance, low read length ENCFF965OFQ bed narrowPeak peaks ENCSR782WRO ChIP-seq EFO:0002067 K562 cell line Homo sapiens BMI1-human ENCAB000BDV DNA False 2014-07-07 ENCODE 1 ENCFF136XHP, ENCFF335IPE 5138333 ENCODE Processing Pipeline ccd55d8ab868c1c9d2233bbe675e6445 https://www.encodeproject.org/files/ENCFF965OFQ/@@download/ENCFF965OFQ.bed.gz hg19 archived borderline replicate concordance, low read length ENCFF559KAV bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human ENCAB311BPZ DNA False 2016-09-20 ENCODE 1 ENCFF160VXC, ENCFF290MFM, ENCFF834TUP 7220426 ENCODE Processing Pipeline 67f2d90491c50a8dd513d9433326ee96 https://www.encodeproject.org/files/ENCFF559KAV/@@download/ENCFF559KAV.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF820UXS bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human ENCAB311BPZ DNA False 2016-09-20 ENCODE 1, 2 ENCFF160VXC, ENCFF163ARJ, ENCFF290MFM, ENCFF834TUP 7233158 ENCODE Processing Pipeline bee511eb11daba31bae945c82eaebc64 https://www.encodeproject.org/files/ENCFF820UXS/@@download/ENCFF820UXS.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF486RQW bed narrowPeak peaks ENCSR350XWY ChIP-seq EFO:0002067 K562 cell line Homo sapiens C11orf30-human ENCAB311BPZ DNA False 2016-09-20 ENCODE 2 ENCFF160VXC, ENCFF163ARJ 6476407 ENCODE Processing Pipeline fbfee1e1f572133bd719fcf43a6ed903 https://www.encodeproject.org/files/ENCFF486RQW/@@download/ENCFF486RQW.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF558BWS bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB997CJG DNA False 2014-07-07 ENCODE 1, 2 ENCFF335IPE, ENCFF460VLB, ENCFF879OQC, ENCFF890OID 6044352 ENCODE Processing Pipeline 9214e6951304b9d8adf49bcdd36c2dd7 https://www.encodeproject.org/files/ENCFF558BWS/@@download/ENCFF558BWS.bed.gz hg19 released borderline replicate concordance, low read depth, low read length ENCFF611XPF bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB997CJG DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF890OID 4886038 ENCODE Processing Pipeline b3815ddeec64dda0ee78e87fa3eebd62 https://www.encodeproject.org/files/ENCFF611XPF/@@download/ENCFF611XPF.bed.gz hg19 released borderline replicate concordance, low read depth, low read length ENCFF315GZR bed narrowPeak peaks ENCSR124BJR ChIP-seq EFO:0002067 K562 cell line Homo sapiens ETV6-human ENCAB997CJG DNA False 2014-07-07 ENCODE 2 ENCFF460VLB, ENCFF879OQC 4255538 ENCODE Processing Pipeline 4f8d22993149919034182d1036579416 https://www.encodeproject.org/files/ENCFF315GZR/@@download/ENCFF315GZR.bed.gz hg19 released borderline replicate concordance, low read depth, low read length ENCFF870JMX bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB506UYG DNA False 2016-10-24 ENCODE 1 ENCFF581ZJL, ENCFF795XNL 6627135 ENCODE Processing Pipeline 1936337eec37b48544e0fc591363ca1b https://www.encodeproject.org/files/ENCFF870JMX/@@download/ENCFF870JMX.bed.gz hg19 released antibody characterized with exemption ENCFF337ISL bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB506UYG DNA False 2016-10-24 ENCODE 2 ENCFF051LWI, ENCFF316QXZ 6500158 ENCODE Processing Pipeline ea9c81a1b970ba86b392f3154ebd0115 https://www.encodeproject.org/files/ENCFF337ISL/@@download/ENCFF337ISL.bed.gz hg19 released antibody characterized with exemption ENCFF334SEU bed narrowPeak peaks ENCSR744WOO ChIP-seq EFO:0002067 K562 cell line Homo sapiens TCF12-human ENCAB506UYG DNA False 2016-10-24 ENCODE 1, 2 ENCFF051LWI, ENCFF316QXZ, ENCFF581ZJL, ENCFF795XNL 7187022 ENCODE Processing Pipeline 972dd524ce2b7557d282612e7c086b19 https://www.encodeproject.org/files/ENCFF334SEU/@@download/ENCFF334SEU.bed.gz hg19 released antibody characterized with exemption ENCFF590LRH bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF479XRX, ENCFF503YHD 7126045 ENCODE Processing Pipeline c4dd620d8cb73921a71e311ff1644875 https://www.encodeproject.org/files/ENCFF590LRH/@@download/ENCFF590LRH.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF603BTL bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF503YHD, ENCFF783CXK 7009038 ENCODE Processing Pipeline 4d3412ad428852982210ca66bd1e37a2 https://www.encodeproject.org/files/ENCFF603BTL/@@download/ENCFF603BTL.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF748XDB bed narrowPeak peaks ENCSR440VKE ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ADNP-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF479XRX, ENCFF503YHD, ENCFF783CXK 7269760 ENCODE Processing Pipeline c5fac7fdbbf59314cecc01c9477e6fbf https://www.encodeproject.org/files/ENCFF748XDB/@@download/ENCFF748XDB.bed.gz hg19 released low read depth, missing genetic modification characterization ENCFF367KYN bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF169LKQ, ENCFF563OVT 6402393 ENCODE Processing Pipeline 4b7df7883c2538296b947e03cbc3ab8d https://www.encodeproject.org/files/ENCFF367KYN/@@download/ENCFF367KYN.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity missing control alignments ENCFF119DBB bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF563OVT, ENCFF708ZXK 5808722 ENCODE Processing Pipeline 61b7ec4a83f998815e2e8b035034a85c https://www.encodeproject.org/files/ENCFF119DBB/@@download/ENCFF119DBB.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity missing control alignments ENCFF163SYH bed narrowPeak peaks ENCSR608HVP ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-KLF13-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF169LKQ, ENCFF563OVT, ENCFF708ZXK 7095681 ENCODE Processing Pipeline 207f90c80050a48c07e83c72c794639f https://www.encodeproject.org/files/ENCFF163SYH/@@download/ENCFF163SYH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity missing control alignments ENCFF001UJR bed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB000ASX DNA see document see document False 2011-07-18 ENCODE 1 1 617800 Richard Myers, HAIB 0598cde9a4ca5b347a48186f3ae321f9 https://www.encodeproject.org/files/ENCFF001UJR/@@download/ENCFF001UJR.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF001UJS bed broadPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB000ASX DNA see document see document False 2011-07-18 ENCODE 2 1 457052 Richard Myers, HAIB 395155e13146ba3c058da7bc53d2a5d5 https://www.encodeproject.org/files/ENCFF001UJS/@@download/ENCFF001UJS.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF671MRQ bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB000ASX DNA see document see document False 2011-07-18 ENCODE 2 ENCFF481PJT, ENCFF750MIM 4415578 ENCODE Processing Pipeline 923cb3d41bb396499735f3ecefeedf4c https://www.encodeproject.org/files/ENCFF671MRQ/@@download/ENCFF671MRQ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF511ZEU bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB000ASX DNA see document see document False 2011-07-18 ENCODE 1 ENCFF052PXH, ENCFF750MIM 4238268 ENCODE Processing Pipeline 3d1d035ab43db38b2cad069a26cc2e8b https://www.encodeproject.org/files/ENCFF511ZEU/@@download/ENCFF511ZEU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF537QVM bed narrowPeak peaks ENCSR000BNE ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB000ASX DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF052PXH, ENCFF481PJT, ENCFF750MIM 5123503 ENCODE Processing Pipeline ac75bda26ea184e834746f62d5b76ee3 https://www.encodeproject.org/files/ENCFF537QVM/@@download/ENCFF537QVM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth ENCFF328JKG bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1 ENCFF678WSG, ENCFF847WWC 5957104 ENCODE Processing Pipeline 6e62a8695452b07cd3c97d0583220ac3 https://www.encodeproject.org/files/ENCFF328JKG/@@download/ENCFF328JKG.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF313HJO bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human ENCAB728YTO DNA False 2016-03-02 ENCODE 2 ENCFF252BPD, ENCFF847WWC 6066355 ENCODE Processing Pipeline b487f0b2226a0251fa87c44d3d0f3897 https://www.encodeproject.org/files/ENCFF313HJO/@@download/ENCFF313HJO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF572YZB bed narrowPeak peaks ENCSR093FKD ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CREB3-human ENCAB728YTO DNA False 2016-03-02 ENCODE 1, 2 ENCFF252BPD, ENCFF678WSG, ENCFF847WWC 6832331 ENCODE Processing Pipeline b91e0ce07796c45372e0303da36a545c https://www.encodeproject.org/files/ENCFF572YZB/@@download/ENCFF572YZB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF203SUN bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB078NIW DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF073XZO 6769212 ENCODE Processing Pipeline 23d5725b84132909e80e5661417b18a3 https://www.encodeproject.org/files/ENCFF203SUN/@@download/ENCFF203SUN.bed.gz hg19 released low read depth missing control alignments ENCFF037YFB bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB078NIW DNA False 2016-06-14 ENCODE 1 ENCFF135OYM, ENCFF581ZJL 6453786 ENCODE Processing Pipeline 8f2d9cef390dd17b72020147d0bd37c5 https://www.encodeproject.org/files/ENCFF037YFB/@@download/ENCFF037YFB.bed.gz hg19 released low read depth missing control alignments ENCFF732HYH bed narrowPeak peaks ENCSR302AWT ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOXK2-human ENCAB078NIW DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF073XZO, ENCFF135OYM, ENCFF581ZJL 7124871 ENCODE Processing Pipeline 3ef725c04659439dcfb40c8b0e4b2113 https://www.encodeproject.org/files/ENCFF732HYH/@@download/ENCFF732HYH.bed.gz hg19 released low read depth missing control alignments ENCFF135TJX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human ENCAB000BPO DNA False 2016-02-05 ENCODE 2 ENCFF061QOJ, ENCFF798GLN 6448558 ENCODE Processing Pipeline fe994e22e5535e903c5d1b003e19c321 https://www.encodeproject.org/files/ENCFF135TJX/@@download/ENCFF135TJX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF908UOT bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human ENCAB000BPO DNA False 2016-02-05 ENCODE 1, 2 ENCFF061QOJ, ENCFF227XXD, ENCFF476EGJ, ENCFF798GLN 7071954 ENCODE Processing Pipeline f23079c4c92c24d44c132d688663e3f5 https://www.encodeproject.org/files/ENCFF908UOT/@@download/ENCFF908UOT.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF491AYX bed narrowPeak peaks ENCSR948QLZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX1-human ENCAB000BPO DNA False 2016-02-05 ENCODE 1 ENCFF227XXD, ENCFF476EGJ 6115452 ENCODE Processing Pipeline dda65365ecde455a4549c284db4677e3 https://www.encodeproject.org/files/ENCFF491AYX/@@download/ENCFF491AYX.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF001VOI bed narrowPeak peaks ENCSR000FAJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2A-human ENCAB000AOC DNA see document see document False 2011-10-29 ENCODE 278310 Sherman Weissman, Yale 41d68a9c6796b020e88d2adcf9be1ba3 https://www.encodeproject.org/files/ENCFF001VOI/@@download/ENCFF001VOI.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF671OVE bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB887GAG DNA False 2017-01-27 ENCODE 1 ENCFF117LCX, ENCFF160VXC 7000743 ENCODE Processing Pipeline 6128a1faa54737510c43c78ce33a8341 https://www.encodeproject.org/files/ENCFF671OVE/@@download/ENCFF671OVE.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF513RYM bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB887GAG DNA False 2017-01-27 ENCODE 2 ENCFF464PKB, ENCFF834TUP 7019864 ENCODE Processing Pipeline 8a4ba87bbb665cd7592881e04722644b https://www.encodeproject.org/files/ENCFF513RYM/@@download/ENCFF513RYM.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF215LBC bed narrowPeak peaks ENCSR979QYJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens MNT-human ENCAB887GAG DNA False 2017-01-27 ENCODE 1, 2 ENCFF117LCX, ENCFF160VXC, ENCFF464PKB, ENCFF834TUP 7247453 ENCODE Processing Pipeline 80089c9088b36cf66fd54bf9a024a8e7 https://www.encodeproject.org/files/ENCFF215LBC/@@download/ENCFF215LBC.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity missing control alignments ENCFF001VOS bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 6887 Sherman Weissman, Yale 3ee906e3f2b296a935a77fbe0cadbcd4 https://www.encodeproject.org/files/ENCFF001VOS/@@download/ENCFF001VOS.bed.gz hg19 archived control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF622FPS bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF465UCG, ENCFF650MOB, ENCFF764OHG 4185597 ENCODE Processing Pipeline cae15d972cebb57bdfb84f52d5b0076f https://www.encodeproject.org/files/ENCFF622FPS/@@download/ENCFF622FPS.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF695SDJ bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1 ENCFF650MOB, ENCFF764OHG 2226729 ENCODE Processing Pipeline e5fa53b68f9680bfff30fcb11a3997e2 https://www.encodeproject.org/files/ENCFF695SDJ/@@download/ENCFF695SDJ.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF490WRP bed narrowPeak peaks ENCSR000FAV ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 30.0 minute STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 2 ENCFF465UCG, ENCFF650MOB 2645766 ENCODE Processing Pipeline b4c91a9f9340d89c0975816c7cdab774 https://www.encodeproject.org/files/ENCFF490WRP/@@download/ENCFF490WRP.bed.gz hg19 released control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF654INX bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000BAX DNA False 2016-04-22 ENCODE 3 ENCFF581ZJL, ENCFF978JTT 6632005 ENCODE Processing Pipeline 91abe29c9a4aed1614168c0945be1519 https://www.encodeproject.org/files/ENCFF654INX/@@download/ENCFF654INX.bed.gz hg19 released ENCFF506ZBZ bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000BAX DNA False 2016-04-22 ENCODE 2 ENCFF051LWI, ENCFF770FOE 6818155 ENCODE Processing Pipeline 608eaff7ddd2e050aa1865b7cbf368e2 https://www.encodeproject.org/files/ENCFF506ZBZ/@@download/ENCFF506ZBZ.bed.gz hg19 released ENCFF612BYB bed narrowPeak peaks ENCSR033VAZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB000BAX DNA False 2016-04-22 ENCODE 2, 3 ENCFF051LWI, ENCFF581ZJL, ENCFF770FOE, ENCFF978JTT 7262870 ENCODE Processing Pipeline 09fd9a63d684e03969815904c0fe1c20 https://www.encodeproject.org/files/ENCFF612BYB/@@download/ENCFF612BYB.bed.gz hg19 released ENCFF997SXB bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human ENCAB000BQG DNA False 2016-03-02 ENCODE 1 ENCFF061QOJ, ENCFF095BVD 5589037 ENCODE Processing Pipeline decbba0f1d48cd087724ff92cac4575c https://www.encodeproject.org/files/ENCFF997SXB/@@download/ENCFF997SXB.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF325KGM bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human ENCAB000BQG DNA False 2016-03-02 ENCODE 1, 2 ENCFF061QOJ, ENCFF095BVD, ENCFF444TNY, ENCFF709WYV 6693331 ENCODE Processing Pipeline 8426882f9c1e9f96649011903ff68939 https://www.encodeproject.org/files/ENCFF325KGM/@@download/ENCFF325KGM.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF127XOZ bed narrowPeak peaks ENCSR795IYP ChIP-seq EFO:0002067 K562 cell line Homo sapiens JUNB-human ENCAB000BQG DNA False 2016-03-02 ENCODE 2 ENCFF444TNY, ENCFF709WYV 5234413 ENCODE Processing Pipeline 2540b3700f187069edc19cf750478f22 https://www.encodeproject.org/files/ENCFF127XOZ/@@download/ENCFF127XOZ.bed.gz hg19 released borderline replicate concordance, low read depth, antibody characterized with exemption ENCFF923WYM bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB221RKB DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF298RPP, ENCFF581ZJL, ENCFF695INR 7143082 ENCODE Processing Pipeline fe318886d2865030fc712f4595cbadea https://www.encodeproject.org/files/ENCFF923WYM/@@download/ENCFF923WYM.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF939VKQ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB221RKB DNA False 2018-01-26 ENCODE 1 ENCFF298RPP, ENCFF581ZJL 6452652 ENCODE Processing Pipeline 99eb1c6a796e6f18b5c580fbceb21067 https://www.encodeproject.org/files/ENCFF939VKQ/@@download/ENCFF939VKQ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF269CZZ bed narrowPeak peaks ENCSR494UQJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR3C1-human ENCAB221RKB DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF695INR 6536831 ENCODE Processing Pipeline eb59420ac468be2b23c240c9cce56837 https://www.encodeproject.org/files/ENCFF269CZZ/@@download/ENCFF269CZZ.bed.gz hg19 released borderline replicate concordance, low read depth experiment not submitted to GEO partially characterized antibody ENCFF351HSM bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human ENCAB000AVT DNA SDS formaldehyde False 2017-12-01 ENCODE 1 ENCFF477SGV, ENCFF594IKC 5428885 ENCODE Processing Pipeline a7fd826f7392e09bc6263c84edd354dc https://www.encodeproject.org/files/ENCFF351HSM/@@download/ENCFF351HSM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO ENCFF706ONY bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human ENCAB000AVT DNA SDS formaldehyde False 2017-12-01 ENCODE 2 ENCFF705ZEH, ENCFF870AMF 5478238 ENCODE Processing Pipeline 022d8a2670228f69d1e6f043311b001e https://www.encodeproject.org/files/ENCFF706ONY/@@download/ENCFF706ONY.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO ENCFF253KPM bed narrowPeak peaks ENCSR581CVA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPH1-human ENCAB000AVT DNA SDS formaldehyde False 2017-12-01 ENCODE 1, 2 ENCFF477SGV, ENCFF594IKC, ENCFF705ZEH, ENCFF870AMF 6661099 ENCODE Processing Pipeline fa73763851765d75c1c4095a95481d2a https://www.encodeproject.org/files/ENCFF253KPM/@@download/ENCFF253KPM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO ENCFF471MPD bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human ENCAB000BMG DNA False 2016-06-23 ENCODE 1 ENCFF011MCR, ENCFF581ZJL 7133917 ENCODE Processing Pipeline eac7607be827468e48cf0c599196747a https://www.encodeproject.org/files/ENCFF471MPD/@@download/ENCFF471MPD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF706LNT bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human ENCAB000BMG DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF767TZS 7049612 ENCODE Processing Pipeline ff995f9cd1c55eec79946c18067b474a https://www.encodeproject.org/files/ENCFF706LNT/@@download/ENCFF706LNT.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF875ISD bed narrowPeak peaks ENCSR530XQI ChIP-seq EFO:0002067 K562 cell line Homo sapiens L3MBTL2-human ENCAB000BMG DNA False 2016-06-23 ENCODE 1, 2 ENCFF011MCR, ENCFF051LWI, ENCFF581ZJL, ENCFF767TZS 7320798 ENCODE Processing Pipeline 87a62b0c6b3efe0893fb3b22d77a4ae4 https://www.encodeproject.org/files/ENCFF875ISD/@@download/ENCFF875ISD.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity ENCFF001VMB bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human ENCAB000AEK DNA see document see document False 2011-10-29 ENCODE 1400659 Michael Snyder, Stanford 46c2e41f59e8c2e9cdceddfe7dd8ab4c https://www.encodeproject.org/files/ENCFF001VMB/@@download/ENCFF001VMB.bed.gz hg19 archived inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review, missing derived_from ENCFF368XWG bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human ENCAB000AEK DNA see document see document False 2011-10-29 ENCODE 2 ENCFF106IJG, ENCFF710NTS 5431250 ENCODE Processing Pipeline 03e3bc481010a522f0be761ea0c49ec1 https://www.encodeproject.org/files/ENCFF368XWG/@@download/ENCFF368XWG.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF077KRK bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human ENCAB000AEK DNA see document see document False 2011-10-29 ENCODE 1 ENCFF710NTS, ENCFF823NIQ 5501529 ENCODE Processing Pipeline 1e02c94c7e82b16b361f512039fdb43a https://www.encodeproject.org/files/ENCFF077KRK/@@download/ENCFF077KRK.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF159GKF bed narrowPeak peaks ENCSR000EGV ChIP-seq EFO:0002067 K562 cell line Homo sapiens BHLHE40-human ENCAB000AEK DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF106IJG, ENCFF710NTS, ENCFF823NIQ 6320048 ENCODE Processing Pipeline cd322e707233bb8dcec5b05765ff167b https://www.encodeproject.org/files/ENCFF159GKF/@@download/ENCFF159GKF.bed.gz hg19 released inconsistent target of control experiment, low read length biological replicates with identical biosample, duplicate lane review ENCFF776LQY bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human ENCAB814YYA DNA False 2017-09-28 ENCODE 1 ENCFF262CJE, ENCFF359CBG, ENCFF506DFV 6394384 ENCODE Processing Pipeline b4546201bfab9d5668f1ae28cd6976eb https://www.encodeproject.org/files/ENCFF776LQY/@@download/ENCFF776LQY.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF700GJA bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human ENCAB814YYA DNA False 2017-09-28 ENCODE 2 ENCFF262CJE, ENCFF376ISC, ENCFF506DFV 6027086 ENCODE Processing Pipeline 60055a48f7ef98a96310305a307328a8 https://www.encodeproject.org/files/ENCFF700GJA/@@download/ENCFF700GJA.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF452MJW bed narrowPeak peaks ENCSR119VCX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHF21A-human ENCAB814YYA DNA False 2017-09-28 ENCODE 1, 2 ENCFF262CJE, ENCFF359CBG, ENCFF376ISC, ENCFF506DFV 7115881 ENCODE Processing Pipeline f2569e17f766a5f544af46b5541d9070 https://www.encodeproject.org/files/ENCFF452MJW/@@download/ENCFF452MJW.bed.gz hg19 released borderline replicate concordance, low read depth ENCFF784XMU bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human ENCAB805XGD DNA False 2017-09-26 ENCODE 1 ENCFF160VXC, ENCFF226SMC 6488413 ENCODE Processing Pipeline 09e5fc32e677c4cee92b4bf569370a99 https://www.encodeproject.org/files/ENCFF784XMU/@@download/ENCFF784XMU.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity ENCFF603XIY bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human ENCAB805XGD DNA False 2017-09-26 ENCODE 2 ENCFF106KDN, ENCFF160VXC, ENCFF834TUP 6995126 ENCODE Processing Pipeline 14fccdac275608c4c8aa56ebb80e9e48 https://www.encodeproject.org/files/ENCFF603XIY/@@download/ENCFF603XIY.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity ENCFF676YFV bed narrowPeak peaks ENCSR997NGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens XRCC3-human ENCAB805XGD DNA False 2017-09-26 ENCODE 1, 2 ENCFF106KDN, ENCFF160VXC, ENCFF226SMC, ENCFF834TUP 7220240 ENCODE Processing Pipeline 2a610860ec43ebdce30569cac29b1b1a https://www.encodeproject.org/files/ENCFF676YFV/@@download/ENCFF676YFV.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity ENCFF001UJZ bed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human ENCAB000AGR DNA see document see document False 2011-07-18 ENCODE 1 1 204699 Richard Myers, HAIB 0cb8237b6fb91cc17841d9c5bedd989f https://www.encodeproject.org/files/ENCFF001UJZ/@@download/ENCFF001UJZ.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001UKA bed broadPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human ENCAB000AGR DNA see document see document False 2011-07-18 ENCODE 2 1 245856 Richard Myers, HAIB afa750ef05c8e8ec1aa7e1a43c5af754 https://www.encodeproject.org/files/ENCFF001UKA/@@download/ENCFF001UKA.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF442HXQ bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human ENCAB000AGR DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF175EOK, ENCFF538JCZ, ENCFF750MIM 4626126 ENCODE Processing Pipeline 58f92d989bf4eaa67d8dd540807e2815 https://www.encodeproject.org/files/ENCFF442HXQ/@@download/ENCFF442HXQ.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF276DPB bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human ENCAB000AGR DNA see document see document False 2011-07-18 ENCODE 1 ENCFF538JCZ, ENCFF750MIM 2554768 ENCODE Processing Pipeline 713c6ee524388deaf65c14f0ec838440 https://www.encodeproject.org/files/ENCFF276DPB/@@download/ENCFF276DPB.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF961HHN bed narrowPeak peaks ENCSR000BLO ChIP-seq EFO:0002067 K562 cell line Homo sapiens GABPA-human ENCAB000AGR DNA see document see document False 2011-07-18 ENCODE 2 ENCFF175EOK, ENCFF750MIM 3417919 ENCODE Processing Pipeline 572f7c3e214505beabcacec7b3f66c51 https://www.encodeproject.org/files/ENCFF961HHN/@@download/ENCFF961HHN.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth, poor library complexity, insufficient read depth, severe bottlenecking ENCFF001VRM bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 127185 Kevin White, UChicago 35973747f04c53456e53f30125e1ba96 https://www.encodeproject.org/files/ENCFF001VRM/@@download/ENCFF001VRM.bed.gz hg19 archived missing genetic modification characterization, low read depth, low read length missing derived_from insufficient replicate concordance ENCFF585FBZ bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1, 2 ENCFF108WAD, ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 6584202 ENCODE Processing Pipeline cca6ada00315104c0fa60b7e9ffd437d https://www.encodeproject.org/files/ENCFF585FBZ/@@download/ENCFF585FBZ.bed.gz hg19 released missing genetic modification characterization, low read depth, low read length insufficient replicate concordance ENCFF771WFB bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 1 ENCFF108WAD, ENCFF647LGE, ENCFF713KWF 5969136 ENCODE Processing Pipeline 15028b121038cbdc39e9bb1a764f4b87 https://www.encodeproject.org/files/ENCFF771WFB/@@download/ENCFF771WFB.bed.gz hg19 released missing genetic modification characterization, low read depth, low read length insufficient replicate concordance ENCFF368NGK bed narrowPeak peaks ENCSR000DJW ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR4A1-human ENCAB000ASW DNA see document see document False 2011-06-03 ENCODE 2 ENCFF387PPQ, ENCFF647LGE, ENCFF713KWF 5646841 ENCODE Processing Pipeline b58f5e76478991950ef4d8e8b5f0d8fd https://www.encodeproject.org/files/ENCFF368NGK/@@download/ENCFF368NGK.bed.gz hg19 released missing genetic modification characterization, low read depth, low read length insufficient replicate concordance ENCFF638THQ bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1 ENCFF308BKD, ENCFF500EQZ 6831070 ENCODE Processing Pipeline f0b5bdd047d8393493505853dc72eedc https://www.encodeproject.org/files/ENCFF638THQ/@@download/ENCFF638THQ.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF703AYW bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human ENCAB728YTO DNA False 2016-01-14 ENCODE 2 ENCFF500EQZ, ENCFF743FRI 6754100 ENCODE Processing Pipeline d8dd05a8c34d3e187849ab51b732871e https://www.encodeproject.org/files/ENCFF703AYW/@@download/ENCFF703AYW.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF421KPL bed narrowPeak peaks ENCSR818DQV ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-MAFG-human ENCAB728YTO DNA False 2016-01-14 ENCODE 1, 2 ENCFF308BKD, ENCFF500EQZ, ENCFF743FRI 7241734 ENCODE Processing Pipeline 58b8adab70591db2724873566c7f03ac https://www.encodeproject.org/files/ENCFF421KPL/@@download/ENCFF421KPL.bed.gz hg19 released missing genetic modification characterization missing control alignments ENCFF718AFD bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKR DNA False 2016-03-02 ENCODE 2 ENCFF579IUE, ENCFF879OQC 5040348 ENCODE Processing Pipeline 0ce9c9477d4487d493a5e07f3bc934fb https://www.encodeproject.org/files/ENCFF718AFD/@@download/ENCFF718AFD.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF791GAM bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKR DNA False 2016-03-02 ENCODE 1 ENCFF335IPE, ENCFF729BKM 5988481 ENCODE Processing Pipeline 99ecd27acaeac0e97bc7a7718227b136 https://www.encodeproject.org/files/ENCFF791GAM/@@download/ENCFF791GAM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF877VHC bed narrowPeak peaks ENCSR920BLG ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIN3A-human ENCAB000AKR DNA False 2016-03-02 ENCODE 1, 2 ENCFF335IPE, ENCFF579IUE, ENCFF729BKM, ENCFF879OQC 6859409 ENCODE Processing Pipeline d8dbb7005f5ec54696e86d6fe01e27c4 https://www.encodeproject.org/files/ENCFF877VHC/@@download/ENCFF877VHC.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF667SBT bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human ENCAB728YTO DNA False 2016-02-16 ENCODE 2 ENCFF089EVB, ENCFF548ERH 5596224 ENCODE Processing Pipeline 0590079ae7fb20d34a1ed34117199a3b https://www.encodeproject.org/files/ENCFF667SBT/@@download/ENCFF667SBT.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF316SRU bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1 ENCFF180RGQ, ENCFF548ERH 5694368 ENCODE Processing Pipeline 846b3c258e98742cc867e2e1be70d7d5 https://www.encodeproject.org/files/ENCFF316SRU/@@download/ENCFF316SRU.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF523JZB bed narrowPeak peaks ENCSR382AIB ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-DDX20-human ENCAB728YTO DNA False 2016-02-16 ENCODE 1, 2 ENCFF089EVB, ENCFF180RGQ, ENCFF548ERH 6591925 ENCODE Processing Pipeline 6dcb369ee8c1345a052f3c533b22b014 https://www.encodeproject.org/files/ENCFF523JZB/@@download/ENCFF523JZB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, missing genetic modification characterization, moderate library complexity ENCFF086XWF bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human ENCAB000BFX DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF119AKS, ENCFF325CNX, ENCFF502LLI, ENCFF806CJS 6830133 ENCODE Processing Pipeline b03e7e2558323f6378a66f70b35e72d4 https://www.encodeproject.org/files/ENCFF086XWF/@@download/ENCFF086XWF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF921JTC bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human ENCAB000BFX DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF119AKS, ENCFF502LLI 5614290 ENCODE Processing Pipeline ad20690d2c1bcb19d44409d9c0d69cd4 https://www.encodeproject.org/files/ENCFF921JTC/@@download/ENCFF921JTC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF656LKP bed narrowPeak peaks ENCSR052PTN ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP1-human ENCAB000BFX DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF325CNX, ENCFF806CJS 5732253 ENCODE Processing Pipeline 4cbc1e54392aa9472a8b9c37e4fbbb43 https://www.encodeproject.org/files/ENCFF656LKP/@@download/ENCFF656LKP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001UKH bed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-07-18 ENCODE 1 1 717099 Richard Myers, HAIB da0ebd35f57b33b05d05393da1f33a60 https://www.encodeproject.org/files/ENCFF001UKH/@@download/ENCFF001UKH.bed.gz hg19 archived control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from ENCFF001UKI bed broadPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-07-18 ENCODE 2 1 1043464 Richard Myers, HAIB d6fab7be071c8d4b24ff4f389efd1250 https://www.encodeproject.org/files/ENCFF001UKI/@@download/ENCFF001UKI.bed.gz hg19 archived control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from ENCFF280XEL bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-07-18 ENCODE 1 ENCFF701KUD, ENCFF825FLR 5191119 ENCODE Processing Pipeline e509edea4142432ef5a6bd1bb6fcb50b https://www.encodeproject.org/files/ENCFF280XEL/@@download/ENCFF280XEL.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample ENCFF609KEQ bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-07-18 ENCODE 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD 6562166 ENCODE Processing Pipeline c9ecb892a86a5097da79006baf7c5a7a https://www.encodeproject.org/files/ENCFF609KEQ/@@download/ENCFF609KEQ.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample ENCFF922CBN bed narrowPeak peaks ENCSR000BLP ChIP-seq EFO:0002067 K562 cell line Homo sapiens MAX-human ENCAB000AIL DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF112YUX, ENCFF585PFH, ENCFF701KUD, ENCFF825FLR 6764862 ENCODE Processing Pipeline a7de17e2d20b0eec93fe9649423df813 https://www.encodeproject.org/files/ENCFF922CBN/@@download/ENCFF922CBN.bed.gz hg19 released control low read depth, borderline replicate concordance, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample ENCFF625PVR bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human ENCAB606JHO DNA False 2017-01-31 ENCODE 1, 2 ENCFF051LWI, ENCFF105XTZ, ENCFF581ZJL, ENCFF606YTH 7218596 ENCODE Processing Pipeline b7b93a32812f7a3a31bb504b9892b82d https://www.encodeproject.org/files/ENCFF625PVR/@@download/ENCFF625PVR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF307JUJ bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human ENCAB606JHO DNA False 2017-01-31 ENCODE 2 ENCFF051LWI, ENCFF606YTH 6500043 ENCODE Processing Pipeline 5c65bc9a01516d7a56cae72f2baf034a https://www.encodeproject.org/files/ENCFF307JUJ/@@download/ENCFF307JUJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF734SUP bed narrowPeak peaks ENCSR638QHV ChIP-seq EFO:0002067 K562 cell line Homo sapiens ELF4-human ENCAB606JHO DNA False 2017-01-31 ENCODE 1 ENCFF105XTZ, ENCFF581ZJL 6729307 ENCODE Processing Pipeline 74392f29101d939774a874931fce12b7 https://www.encodeproject.org/files/ENCFF734SUP/@@download/ENCFF734SUP.bed.gz hg19 released low read depth, mild to moderate bottlenecking, antibody characterized with exemption, moderate library complexity ENCFF399PWD bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB152MRN DNA False 2018-01-26 ENCODE 1 ENCFF304WKT, ENCFF581ZJL 7116658 ENCODE Processing Pipeline 45aaf01c6c66e2a1da2dd08eeffe4503 https://www.encodeproject.org/files/ENCFF399PWD/@@download/ENCFF399PWD.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF380RMA bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB152MRN DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF333FLO 6789390 ENCODE Processing Pipeline 3e88a974bac6cd6198dc1f3be445c88e https://www.encodeproject.org/files/ENCFF380RMA/@@download/ENCFF380RMA.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF368EUJ bed narrowPeak peaks ENCSR893WSB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB152MRN DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF304WKT, ENCFF333FLO, ENCFF581ZJL 7156152 ENCODE Processing Pipeline 66854d22b7924ae9074a67f725ad97a1 https://www.encodeproject.org/files/ENCFF368EUJ/@@download/ENCFF368EUJ.bed.gz hg19 released borderline replicate concordance experiment not submitted to GEO partially characterized antibody ENCFF014ZNK bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF075EEP, ENCFF303OOS 7084035 ENCODE Processing Pipeline 77ff4cb4f03880759fbea7159b5e1b9e https://www.encodeproject.org/files/ENCFF014ZNK/@@download/ENCFF014ZNK.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF593QEG bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF075EEP, ENCFF303OOS, ENCFF310DOA 7216986 ENCODE Processing Pipeline 30b794e5afc03ed3440259a87f0dd797 https://www.encodeproject.org/files/ENCFF593QEG/@@download/ENCFF593QEG.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF851RZA bed narrowPeak peaks ENCSR620VIC ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-CEBPG-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF075EEP, ENCFF310DOA 6682206 ENCODE Processing Pipeline 714549be6e829c4e2ec9fc57bfc6d884 https://www.encodeproject.org/files/ENCFF851RZA/@@download/ENCFF851RZA.bed.gz hg19 released borderline replicate concordance, missing genetic modification characterization ENCFF001UMD bed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANT DNA see document see document False 2011-07-18 ENCODE 2 1 120611 Richard Myers, HAIB ef9106ed675a4543afaeaa68cad36c2a https://www.encodeproject.org/files/ENCFF001UMD/@@download/ENCFF001UMD.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, control insufficient read depth, insufficient read depth extremely low read depth ENCFF001UME bed broadPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANT DNA see document see document False 2011-07-18 ENCODE 1 1 383870 Richard Myers, HAIB 646e15a4bc1fecc7b9e6971f6d8bfbae https://www.encodeproject.org/files/ENCFF001UME/@@download/ENCFF001UME.bed.gz hg19 archived mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient replicate concordance, control insufficient read depth, insufficient read depth extremely low read depth ENCFF608RBZ bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANT DNA see document see document False 2011-07-18 ENCODE 1 ENCFF750MIM, ENCFF974OCA 3450296 ENCODE Processing Pipeline 3f12a4be35f1c4062bfcc2b1a3d8e56e https://www.encodeproject.org/files/ENCFF608RBZ/@@download/ENCFF608RBZ.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth, insufficient read depth extremely low read depth ENCFF475ICG bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANT DNA see document see document False 2011-07-18 ENCODE 2 ENCFF374QJL, ENCFF750MIM 1785632 ENCODE Processing Pipeline 985f27c035f182ff8942dea5b697eda7 https://www.encodeproject.org/files/ENCFF475ICG/@@download/ENCFF475ICG.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth, insufficient read depth extremely low read depth ENCFF897DAT bed narrowPeak peaks ENCSR000BKU ChIP-seq EFO:0002067 K562 cell line Homo sapiens YY1-human ENCAB000ANT DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF374QJL, ENCFF750MIM, ENCFF974OCA 4473636 ENCODE Processing Pipeline c14c00910a3b214c2e00ba89e45afb83 https://www.encodeproject.org/files/ENCFF897DAT/@@download/ENCFF897DAT.bed.gz hg19 released mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient replicate concordance, control insufficient read depth, insufficient read depth extremely low read depth ENCFF001UKL bed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human ENCAB000AJH DNA see document see document False 2012-02-29 ENCODE 1 1 434822 Richard Myers, HAIB 5f288bddd95d7f6f8b9e48f34e8674ed https://www.encodeproject.org/files/ENCFF001UKL/@@download/ENCFF001UKL.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF001UKM bed broadPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human ENCAB000AJH DNA see document see document False 2012-02-29 ENCODE 2 1 402146 Richard Myers, HAIB dacd21c37aced1dfec94f5b508976f22 https://www.encodeproject.org/files/ENCFF001UKM/@@download/ENCFF001UKM.bed.gz hg19 archived inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from ENCFF622IDZ bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human ENCAB000AJH DNA see document see document False 2012-02-29 ENCODE 1 ENCFF522HDC, ENCFF717CDL 6199883 ENCODE Processing Pipeline 774fddafb4755bcf348c1ddbf015a7a7 https://www.encodeproject.org/files/ENCFF622IDZ/@@download/ENCFF622IDZ.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF829WNA bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human ENCAB000AJH DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF422ZRF, ENCFF522HDC, ENCFF717CDL 6908852 ENCODE Processing Pipeline 2db48d90c72ed8698da70add975ce764 https://www.encodeproject.org/files/ENCFF829WNA/@@download/ENCFF829WNA.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF952DON bed narrowPeak peaks ENCSR000BRS ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2F2-human ENCAB000AJH DNA see document see document False 2012-02-29 ENCODE 2 ENCFF422ZRF, ENCFF522HDC 6654612 ENCODE Processing Pipeline 795e5b41a86fd9c0fb2ecffc0e96b4aa https://www.encodeproject.org/files/ENCFF952DON/@@download/ENCFF952DON.bed.gz hg19 released inconsistent platforms, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample ENCFF531NQP bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human ENCAB651SYY DNA False 2018-01-26 ENCODE 2 ENCFF160VXC, ENCFF306NYS, ENCFF834TUP 5971548 ENCODE Processing Pipeline 8e9c11a2ca840a085432e43460da5b42 https://www.encodeproject.org/files/ENCFF531NQP/@@download/ENCFF531NQP.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF464TJB bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human ENCAB651SYY DNA False 2018-01-26 ENCODE 1 ENCFF160VXC, ENCFF332BKR 4994184 ENCODE Processing Pipeline 9aa45d482c71c8760087f0b0d9a92608 https://www.encodeproject.org/files/ENCFF464TJB/@@download/ENCFF464TJB.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF179GKP bed narrowPeak peaks ENCSR764YDL ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR0B1-human ENCAB651SYY DNA False 2018-01-26 ENCODE 1, 2 ENCFF160VXC, ENCFF306NYS, ENCFF332BKR, ENCFF834TUP 5541417 ENCODE Processing Pipeline 3040756355eed6d7cb0ef786f7059b79 https://www.encodeproject.org/files/ENCFF179GKP/@@download/ENCFF179GKP.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF001UKJ bed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human ENCAB000AIQ DNA see document see document False 2011-07-18 ENCODE 1 1 54276 Richard Myers, HAIB 385c3b1e1b57faeff565b0cebb7e4638 https://www.encodeproject.org/files/ENCFF001UKJ/@@download/ENCFF001UKJ.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth missing control alignments ENCFF001UKK bed broadPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human ENCAB000AIQ DNA see document see document False 2011-07-18 ENCODE 2 1 36858 Richard Myers, HAIB 065c8bd750bdd207882bb6023e2930d1 https://www.encodeproject.org/files/ENCFF001UKK/@@download/ENCFF001UKK.bed.gz hg19 archived low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from control insufficient read depth missing control alignments ENCFF825VQR bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human ENCAB000AIQ DNA see document see document False 2011-07-18 ENCODE 2 ENCFF037JQU, ENCFF750MIM 179486 ENCODE Processing Pipeline 8c675139cf606e34fb00e7098b1ea42c https://www.encodeproject.org/files/ENCFF825VQR/@@download/ENCFF825VQR.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF307TQZ bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human ENCAB000AIQ DNA see document see document False 2011-07-18 ENCODE 1 ENCFF700OGN, ENCFF750MIM 128509 ENCODE Processing Pipeline 29ba80eee0d97892a5028bf68567ac0b https://www.encodeproject.org/files/ENCFF307TQZ/@@download/ENCFF307TQZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF435ESC bed narrowPeak peaks ENCSR000BNV ChIP-seq EFO:0002067 K562 cell line Homo sapiens MEF2A-human ENCAB000AIQ DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037JQU, ENCFF700OGN, ENCFF750MIM 4339920 ENCODE Processing Pipeline 2262ccbae76d8f3fcc105a8e59e93911 https://www.encodeproject.org/files/ENCFF435ESC/@@download/ENCFF435ESC.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample control insufficient read depth missing control alignments ENCFF248TTW bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human ENCAB125OWA DNA False 2017-05-18 ENCODE 1, 2 ENCFF160VXC, ENCFF593YDQ, ENCFF834TUP, ENCFF927PKK 7216159 ENCODE Processing Pipeline 1112da394d3650229b3ebe1cf8bbbd23 https://www.encodeproject.org/files/ENCFF248TTW/@@download/ENCFF248TTW.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF302RJE bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human ENCAB125OWA DNA False 2017-05-18 ENCODE 1 ENCFF160VXC, ENCFF593YDQ 6620058 ENCODE Processing Pipeline c1eca67e5d636b2e1ffce3d0369a48d8 https://www.encodeproject.org/files/ENCFF302RJE/@@download/ENCFF302RJE.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF507JPU bed narrowPeak peaks ENCSR223MLH ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRCA1-human ENCAB125OWA DNA False 2017-05-18 ENCODE 2 ENCFF834TUP, ENCFF927PKK 6761455 ENCODE Processing Pipeline 192e9a0745904e52ee8620b8be176c1b https://www.encodeproject.org/files/ENCFF507JPU/@@download/ENCFF507JPU.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF001VOT bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human ENCAB000AKX DNA see document see document False 2011-10-29 ENCODE 771829 Michael Snyder, Stanford a72c84f021798c44d11750ea7679ffbf https://www.encodeproject.org/files/ENCFF001VOT/@@download/ENCFF001VOT.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF041YJV bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human ENCAB000AKX DNA see document see document False 2011-10-29 ENCODE 2 ENCFF710NTS, ENCFF845WVY 4305604 ENCODE Processing Pipeline 2371b94b7137fd7a56b567acc2631c85 https://www.encodeproject.org/files/ENCFF041YJV/@@download/ENCFF041YJV.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF714FTS bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human ENCAB000AKX DNA see document see document False 2011-10-29 ENCODE 1 ENCFF359UWD, ENCFF710NTS 3707352 ENCODE Processing Pipeline 0a5fdaca0482075d611610ccfc931034 https://www.encodeproject.org/files/ENCFF714FTS/@@download/ENCFF714FTS.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF892UIH bed narrowPeak peaks ENCSR000EGW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMC3-human ENCAB000AKX DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF359UWD, ENCFF710NTS, ENCFF845WVY 4807747 ENCODE Processing Pipeline afdb46ca0c625d0fd83de406cc138592 https://www.encodeproject.org/files/ENCFF892UIH/@@download/ENCFF892UIH.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample insufficient read depth ENCFF774DGH bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human ENCAB698FCU DNA False 2016-03-30 ENCODE 1 ENCFF444TNY, ENCFF847YDJ, ENCFF875XTU 5923453 ENCODE Processing Pipeline 1c68465e3c10cf7ca801edb567c6a1c8 https://www.encodeproject.org/files/ENCFF774DGH/@@download/ENCFF774DGH.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF433RNR bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human ENCAB698FCU DNA False 2016-03-30 ENCODE 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ 6188871 ENCODE Processing Pipeline 4f349162fa27939dac8a7fc617b685f9 https://www.encodeproject.org/files/ENCFF433RNR/@@download/ENCFF433RNR.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF671XXI bed narrowPeak peaks ENCSR387SYS ChIP-seq EFO:0002067 K562 cell line Homo sapiens DEAF1-human ENCAB698FCU DNA False 2016-03-30 ENCODE 1, 2 ENCFF444TNY, ENCFF584YAE, ENCFF847YDJ, ENCFF875XTU 6588901 ENCODE Processing Pipeline 0b32b352d9146441b84ad9468d59806b https://www.encodeproject.org/files/ENCFF671XXI/@@download/ENCFF671XXI.bed.gz hg19 released low read depth, antibody characterized with exemption ENCFF001VMI bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2011-10-29 ENCODE 1882743 Michael Snyder, Stanford ebf5ea511ad1df631c5ff99c4f772e1e https://www.encodeproject.org/files/ENCFF001VMI/@@download/ENCFF001VMI.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF206BMO bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2011-10-29 ENCODE 1 ENCFF059XPJ, ENCFF710NTS 5056575 ENCODE Processing Pipeline b4656163d89caf96eaf4861a3a13b877 https://www.encodeproject.org/files/ENCFF206BMO/@@download/ENCFF206BMO.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF755NTM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2011-10-29 ENCODE 2 ENCFF353LOM, ENCFF710NTS 4992247 ENCODE Processing Pipeline 50117195db5af85c352e3c74b5c52af5 https://www.encodeproject.org/files/ENCFF755NTM/@@download/ENCFF755NTM.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF143EHM bed narrowPeak peaks ENCSR000EHE ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPB-human ENCAB000AFB DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF059XPJ, ENCFF353LOM, ENCFF710NTS 5927380 ENCODE Processing Pipeline 88d7cb6ea70b61b2080caa85ae611e97 https://www.encodeproject.org/files/ENCFF143EHM/@@download/ENCFF143EHM.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF521WEX bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF064YUE, ENCFF268SHC 5731296 ENCODE Processing Pipeline 47f9f3c9fef8c244efac26f3a0b12900 https://www.encodeproject.org/files/ENCFF521WEX/@@download/ENCFF521WEX.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF629GGT bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF064YUE, ENCFF878ETO 5713700 ENCODE Processing Pipeline a321149a06867510cb81062207589609 https://www.encodeproject.org/files/ENCFF629GGT/@@download/ENCFF629GGT.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF639WQU bed narrowPeak peaks ENCSR847LBF ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-FOXJ2-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF064YUE, ENCFF268SHC, ENCFF878ETO 6409135 ENCODE Processing Pipeline 878d8b59cd7b47cfe4587112875e991e https://www.encodeproject.org/files/ENCFF639WQU/@@download/ENCFF639WQU.bed.gz hg19 released control low read depth, low read depth, missing genetic modification characterization ENCFF486FET bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human ENCAB572QGE DNA False 2017-08-25 ENCODE 1 ENCFF160VXC, ENCFF189FPT, ENCFF834TUP 7239229 ENCODE Processing Pipeline ec683eed7ca6abdecb559cba9830d724 https://www.encodeproject.org/files/ENCFF486FET/@@download/ENCFF486FET.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF534CIF bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human ENCAB572QGE DNA False 2017-08-25 ENCODE 2 ENCFF700FUA, ENCFF834TUP 6123736 ENCODE Processing Pipeline 1912dede8fd2149f0c07623f8daa48e5 https://www.encodeproject.org/files/ENCFF534CIF/@@download/ENCFF534CIF.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF677IKS bed narrowPeak peaks ENCSR162IEM ChIP-seq EFO:0002067 K562 cell line Homo sapiens MYBL2-human ENCAB572QGE DNA False 2017-08-25 ENCODE 1, 2 ENCFF160VXC, ENCFF189FPT, ENCFF700FUA, ENCFF834TUP 7273760 ENCODE Processing Pipeline 156b7b7a0ae57f855b38516596524aca https://www.encodeproject.org/files/ENCFF677IKS/@@download/ENCFF677IKS.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity ENCFF883NAR bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human ENCAB179VMG DNA False 2018-01-26 ENCODE 3 ENCFF127OLY, ENCFF160VXC 7021507 ENCODE Processing Pipeline fe45ff543ef8295a5913e3a681bfce77 https://www.encodeproject.org/files/ENCFF883NAR/@@download/ENCFF883NAR.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF275SGC bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human ENCAB179VMG DNA False 2018-01-26 ENCODE 4 ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 7080034 ENCODE Processing Pipeline 4acb7dce7f05f3a92faf0b49cf25c25c https://www.encodeproject.org/files/ENCFF275SGC/@@download/ENCFF275SGC.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF932HNN bed narrowPeak peaks ENCSR024LKA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC3-human ENCAB179VMG DNA False 2018-01-26 ENCODE 3, 4 ENCFF127OLY, ENCFF160VXC, ENCFF345VAR, ENCFF834TUP 7256189 ENCODE Processing Pipeline 07c568604e67de0671d91cef01b6929b https://www.encodeproject.org/files/ENCFF932HNN/@@download/ENCFF932HNN.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity experiment not submitted to GEO partially characterized antibody ENCFF647EHE bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human ENCAB686QMA DNA False 2017-07-28 ENCODE 1 ENCFF160VXC, ENCFF557UXG 6810731 ENCODE Processing Pipeline eb698dad8929ad37dadb14376b02a824 https://www.encodeproject.org/files/ENCFF647EHE/@@download/ENCFF647EHE.bed.gz hg19 released mild to moderate bottlenecking ENCFF520CHA bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human ENCAB686QMA DNA False 2017-07-28 ENCODE 2 ENCFF834TUP, ENCFF982XUS 6640626 ENCODE Processing Pipeline 3bc01a3e3799b65a9311bba589dadedc https://www.encodeproject.org/files/ENCFF520CHA/@@download/ENCFF520CHA.bed.gz hg19 released mild to moderate bottlenecking ENCFF558GGF bed narrowPeak peaks ENCSR168CEE ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA6-human ENCAB686QMA DNA False 2017-07-28 ENCODE 1, 2 ENCFF160VXC, ENCFF557UXG, ENCFF834TUP, ENCFF982XUS 7158152 ENCODE Processing Pipeline 9aa9520c4e0f280d4685c9b292749ef9 https://www.encodeproject.org/files/ENCFF558GGF/@@download/ENCFF558GGF.bed.gz hg19 released mild to moderate bottlenecking ENCFF669NWG bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human ENCAB000BOG DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF849SWB, ENCFF952MSU 7252192 ENCODE Processing Pipeline 266f1bee56fdf2ea31ee6a6bf846a2fa https://www.encodeproject.org/files/ENCFF669NWG/@@download/ENCFF669NWG.bed.gz hg19 released mild to moderate bottlenecking ENCFF954EOW bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human ENCAB000BOG DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF952MSU 6924185 ENCODE Processing Pipeline d52ba4e7f65b735d615e3d4954ce9202 https://www.encodeproject.org/files/ENCFF954EOW/@@download/ENCFF954EOW.bed.gz hg19 released mild to moderate bottlenecking ENCFF221LMV bed narrowPeak peaks ENCSR788RSW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SOX6-human ENCAB000BOG DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF849SWB 6968495 ENCODE Processing Pipeline 4f52730587772f0e911e79139e031afe https://www.encodeproject.org/files/ENCFF221LMV/@@download/ENCFF221LMV.bed.gz hg19 released mild to moderate bottlenecking ENCFF900BSR bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB585QVB DNA False 2018-01-26 ENCODE 1 ENCFF581ZJL, ENCFF901AKT 6741528 ENCODE Processing Pipeline 58128ad5ec746ec21a387510fb287e67 https://www.encodeproject.org/files/ENCFF900BSR/@@download/ENCFF900BSR.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF904VPX bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB585QVB DNA False 2018-01-26 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF875UQI, ENCFF901AKT 7227830 ENCODE Processing Pipeline 44322f9f6d4443ab81f6a7cf06b7443b https://www.encodeproject.org/files/ENCFF904VPX/@@download/ENCFF904VPX.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF017TYA bed narrowPeak peaks ENCSR658WFQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOA1-human ENCAB585QVB DNA False 2018-01-26 ENCODE 2 ENCFF051LWI, ENCFF875UQI 6781599 ENCODE Processing Pipeline 407ee578b0bb09c7021d00bb1deb39b3 https://www.encodeproject.org/files/ENCFF017TYA/@@download/ENCFF017TYA.bed.gz hg19 released low read depth, mild to moderate bottlenecking experiment not submitted to GEO partially characterized antibody ENCFF830WTR bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 4750603 ENCODE Processing Pipeline da1adcf7c8e65b129d23f74d360c650a https://www.encodeproject.org/files/ENCFF830WTR/@@download/ENCFF830WTR.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF355FJN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4271462 ENCODE Processing Pipeline dca743565f99bebc0a1da12f168a6062 https://www.encodeproject.org/files/ENCFF355FJN/@@download/ENCFF355FJN.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF895ZCE bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 5962018 ENCODE Processing Pipeline 93baf08902be699318abb079c986deac https://www.encodeproject.org/files/ENCFF895ZCE/@@download/ENCFF895ZCE.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF196NEV bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 4 ENCFF729TUK, ENCFF879OQC 4963186 ENCODE Processing Pipeline bc72f3c31d4c4930de1d951cb69f3c28 https://www.encodeproject.org/files/ENCFF196NEV/@@download/ENCFF196NEV.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF603ABN bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 1 ENCFF335IPE, ENCFF707DVP 4472627 ENCODE Processing Pipeline 81881c2eb3c994ca231224ff2b71f64a https://www.encodeproject.org/files/ENCFF603ABN/@@download/ENCFF603ABN.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF671UIB bed narrowPeak peaks ENCSR618GDK ChIP-seq EFO:0002067 K562 cell line Homo sapiens CEBPZ-human ENCAB000ADO DNA False 2014-07-07 ENCODE 1, 4 ENCFF335IPE, ENCFF707DVP, ENCFF729TUK, ENCFF879OQC 6136465 ENCODE Processing Pipeline 35579a6a058ce6955e06f44bea582a10 https://www.encodeproject.org/files/ENCFF671UIB/@@download/ENCFF671UIB.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length ENCFF508MDN bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human ENCAB081KLG DNA False 2017-01-27 ENCODE 1 ENCFF518TII, ENCFF581ZJL 6690900 ENCODE Processing Pipeline 04bd69cb516b2ca5310ee105263c240d https://www.encodeproject.org/files/ENCFF508MDN/@@download/ENCFF508MDN.bed.gz hg19 released low read depth ENCFF231LOJ bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human ENCAB081KLG DNA False 2017-01-27 ENCODE 1, 2 ENCFF051LWI, ENCFF134HTY, ENCFF518TII, ENCFF581ZJL 7221782 ENCODE Processing Pipeline 7ae8cbc53fa189cbfe53de27f75f9909 https://www.encodeproject.org/files/ENCFF231LOJ/@@download/ENCFF231LOJ.bed.gz hg19 released low read depth ENCFF370RBU bed narrowPeak peaks ENCSR924GXX ChIP-seq EFO:0002067 K562 cell line Homo sapiens PHB2-human ENCAB081KLG DNA False 2017-01-27 ENCODE 2 ENCFF051LWI, ENCFF134HTY 6668633 ENCODE Processing Pipeline 508447dc5f2ece5fee0b0816bac0d5c7 https://www.encodeproject.org/files/ENCFF370RBU/@@download/ENCFF370RBU.bed.gz hg19 released low read depth ENCFF001VNH bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human ENCAB000AHG DNA see document see document False 2012-08-20 ENCODE 798205 Michael Snyder, Stanford 0b23a5f7826f7719d4c7b71a54db8c89 https://www.encodeproject.org/files/ENCFF001VNH/@@download/ENCFF001VNH.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from missing control alignments ENCFF912AHN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human ENCAB000AHG DNA see document see document False 2012-08-20 ENCODE 2 ENCFF710NTS, ENCFF906VXN 4867217 ENCODE Processing Pipeline 9166549a0bef72476e102ad417f38e98 https://www.encodeproject.org/files/ENCFF912AHN/@@download/ENCFF912AHN.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample missing control alignments ENCFF317AIN bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human ENCAB000AHG DNA see document see document False 2012-08-20 ENCODE 1 ENCFF042SFT, ENCFF710NTS 4992350 ENCODE Processing Pipeline 9fe7d779b69b121ed7b469075d758d9e https://www.encodeproject.org/files/ENCFF317AIN/@@download/ENCFF317AIN.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample missing control alignments ENCFF386FIZ bed narrowPeak peaks ENCSR000EFN ChIP-seq EFO:0002067 K562 cell line Homo sapiens HCFC1-human ENCAB000AHG DNA see document see document False 2012-08-20 ENCODE 1, 2 ENCFF042SFT, ENCFF710NTS, ENCFF906VXN 3510066 ENCODE Processing Pipeline 13d3449b2c1f2a3d85f276c4dff934a0 https://www.encodeproject.org/files/ENCFF386FIZ/@@download/ENCFF386FIZ.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample missing control alignments ENCFF216OFC bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human ENCAB550CKA DNA False 2016-07-28 ENCODE 1 ENCFF581ZJL, ENCFF868URB 7046613 ENCODE Processing Pipeline 46d98ee5e5f4ed73ee11ee9bf5aa5bd7 https://www.encodeproject.org/files/ENCFF216OFC/@@download/ENCFF216OFC.bed.gz hg19 released mild to moderate bottlenecking ENCFF704QCS bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human ENCAB550CKA DNA False 2016-07-28 ENCODE 1, 2 ENCFF051LWI, ENCFF115WLQ, ENCFF581ZJL, ENCFF868URB 7123376 ENCODE Processing Pipeline 803bc987900fd64dee1c82633eb30979 https://www.encodeproject.org/files/ENCFF704QCS/@@download/ENCFF704QCS.bed.gz hg19 released mild to moderate bottlenecking ENCFF118OEM bed narrowPeak peaks ENCSR157TCS ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCE1-human ENCAB550CKA DNA False 2016-07-28 ENCODE 2 ENCFF051LWI, ENCFF115WLQ 6930776 ENCODE Processing Pipeline 7ebe12154b71d7b0c29387f0c8cd6fa8 https://www.encodeproject.org/files/ENCFF118OEM/@@download/ENCFF118OEM.bed.gz hg19 released mild to moderate bottlenecking ENCFF008XTO bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-06-23 ENCODE 1 ENCFF581ZJL, ENCFF862UZN 6606736 ENCODE Processing Pipeline f35483d19c4445bdeed1b505251a418e https://www.encodeproject.org/files/ENCFF008XTO/@@download/ENCFF008XTO.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF830YCS bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-06-23 ENCODE 2 ENCFF051LWI, ENCFF080MNK 6824938 ENCODE Processing Pipeline 1f26fecef2e02649484455fc3cc1772f https://www.encodeproject.org/files/ENCFF830YCS/@@download/ENCFF830YCS.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF811RGP bed narrowPeak peaks ENCSR041AXL ChIP-seq EFO:0002067 K562 cell line Homo sapiens RFX1-human ENCAB000BCV DNA False 2016-06-23 ENCODE 1, 2 ENCFF051LWI, ENCFF080MNK, ENCFF581ZJL, ENCFF862UZN 7183477 ENCODE Processing Pipeline de10bf4b5542e94981e07d5156011e3b https://www.encodeproject.org/files/ENCFF811RGP/@@download/ENCFF811RGP.bed.gz hg19 released low read depth, mild to moderate bottlenecking missing control alignments ENCFF997KYE bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human ENCAB728YTO DNA False 2017-12-01 ENCODE 4 ENCFF266BSJ, ENCFF487EDR 6453669 ENCODE Processing Pipeline ce6afeb7bed75e0c3e91c7bc06053b62 https://www.encodeproject.org/files/ENCFF997KYE/@@download/ENCFF997KYE.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF696LOS bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human ENCAB728YTO DNA False 2017-12-01 ENCODE 3, 4 ENCFF266BSJ, ENCFF380DQS, ENCFF487EDR 6805260 ENCODE Processing Pipeline bb0f0ea1b5ef316ba97bab1890dd653d https://www.encodeproject.org/files/ENCFF696LOS/@@download/ENCFF696LOS.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF016RIL bed narrowPeak peaks ENCSR158RYZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZBTB40-human ENCAB728YTO DNA False 2017-12-01 ENCODE 3 ENCFF266BSJ, ENCFF380DQS 5528435 ENCODE Processing Pipeline fdf6f45287ff29286dd7035ff27beeae https://www.encodeproject.org/files/ENCFF016RIL/@@download/ENCFF016RIL.bed.gz hg19 released control low read depth, borderline replicate concordance, missing genetic modification characterization experiment not submitted to GEO ENCFF001ULL bed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human ENCAB000ALI DNA see document see document False 2012-02-29 ENCODE 1 1 234403 Richard Myers, HAIB 9e621be00defddae25724931841fa8b5 https://www.encodeproject.org/files/ENCFF001ULL/@@download/ENCFF001ULL.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF001ULM bed broadPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human ENCAB000ALI DNA see document see document False 2012-02-29 ENCODE 2 1 143298 Richard Myers, HAIB dd498413aa76fb71d86c44612010229d https://www.encodeproject.org/files/ENCFF001ULM/@@download/ENCFF001ULM.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample, missing derived_from ENCFF373WLW bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human ENCAB000ALI DNA see document see document False 2012-02-29 ENCODE 1 ENCFF448TVU, ENCFF522HDC, ENCFF727JYL 6224554 ENCODE Processing Pipeline 63cf6cc7aeb614a2c75208157d5e59db https://www.encodeproject.org/files/ENCFF373WLW/@@download/ENCFF373WLW.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF562UJV bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human ENCAB000ALI DNA see document see document False 2012-02-29 ENCODE 2 ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6125895 ENCODE Processing Pipeline 4fe3ea1090463a5a9479a4052efef902 https://www.encodeproject.org/files/ENCFF562UJV/@@download/ENCFF562UJV.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF556KAN bed narrowPeak peaks ENCSR000BRR ChIP-seq EFO:0002067 K562 cell line Homo sapiens STAT5A-human ENCAB000ALI DNA see document see document False 2012-02-29 ENCODE 1, 2 ENCFF448TVU, ENCFF522HDC, ENCFF711QEM, ENCFF727JYL 6855621 ENCODE Processing Pipeline 5597f3e31d0ec9d2934628ea38c5037b https://www.encodeproject.org/files/ENCFF556KAN/@@download/ENCFF556KAN.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, low read length biological replicates with identical biosample ENCFF001VPB bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALQ DNA see document see document False 2012-05-14 ENCODE 1157057 Michael Snyder, Stanford c4f170ccd454708a9833617832e98eda https://www.encodeproject.org/files/ENCFF001VPB/@@download/ENCFF001VPB.bed.gz hg19 archived mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF850MTK bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALQ DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF232HND, ENCFF375HMX, ENCFF710NTS 6177942 ENCODE Processing Pipeline 3ef47a2b6d104c8390e87b2833a15a91 https://www.encodeproject.org/files/ENCFF850MTK/@@download/ENCFF850MTK.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF676HRI bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALQ DNA see document see document False 2012-05-14 ENCODE 2 ENCFF375HMX, ENCFF710NTS 5153956 ENCODE Processing Pipeline 8d4df699854aa4528b138d46b01e6f27 https://www.encodeproject.org/files/ENCFF676HRI/@@download/ENCFF676HRI.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF205BAR bed narrowPeak peaks ENCSR000EGB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TBL1XR1-human ENCAB000ALQ DNA see document see document False 2012-05-14 ENCODE 1 ENCFF232HND, ENCFF710NTS 5205295 ENCODE Processing Pipeline 0668bcb1f596df50e9193d8ba5c90e50 https://www.encodeproject.org/files/ENCFF205BAR/@@download/ENCFF205BAR.bed.gz hg19 released mild to moderate bottlenecking, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF820OCS bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF764PZX, ENCFF947CVN, ENCFF977MTW 6972441 ENCODE Processing Pipeline ae5666be81653ceec822d96358b12f0c https://www.encodeproject.org/files/ENCFF820OCS/@@download/ENCFF820OCS.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF061VCB bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF947CVN, ENCFF977MTW 6359309 ENCODE Processing Pipeline 3ec09c55ea1f7b4322b25ffae57fbbd1 https://www.encodeproject.org/files/ENCFF061VCB/@@download/ENCFF061VCB.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF866TCF bed narrowPeak peaks ENCSR580IAO ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-ZNF197-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF764PZX, ENCFF977MTW 6282247 ENCODE Processing Pipeline 5266e1b14addcb13437e5be3c60e2a4a https://www.encodeproject.org/files/ENCFF866TCF/@@download/ENCFF866TCF.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF001VNE bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGT DNA see document see document False 2011-10-29 ENCODE 124606 Peggy Farnham, USC d7f7e77f95b44fbe690dfb976de51a5a https://www.encodeproject.org/files/ENCFF001VNE/@@download/ENCFF001VNE.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient replicate concordance, insufficient read length, insufficient read depth ENCFF717ZNF bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGT DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF778HCA, ENCFF990JRT 5049856 ENCODE Processing Pipeline 4b8b4d5a7dc25ccddf6939ee2c2f2b65 https://www.encodeproject.org/files/ENCFF717ZNF/@@download/ENCFF717ZNF.bed.gz hg19 released biological replicates with identical biosample insufficient replicate concordance, insufficient read length, insufficient read depth ENCFF061TTI bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGT DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF990JRT 4134004 ENCODE Processing Pipeline 460d8efe582bd8ac3d839aaaa1cb871e https://www.encodeproject.org/files/ENCFF061TTI/@@download/ENCFF061TTI.bed.gz hg19 released biological replicates with identical biosample insufficient replicate concordance, insufficient read length, insufficient read depth ENCFF163ZFQ bed narrowPeak peaks ENCSR000EWG ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA2-human ENCAB000AGT DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF778HCA 2818433 ENCODE Processing Pipeline c6f4e290a05030a7b7d4cb89d6b57354 https://www.encodeproject.org/files/ENCFF163ZFQ/@@download/ENCFF163ZFQ.bed.gz hg19 released biological replicates with identical biosample insufficient replicate concordance, insufficient read length, insufficient read depth ENCFF415ZVO bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB691BTB DNA False 2016-06-13 ENCODE 1, 2 ENCFF051LWI, ENCFF073BGI, ENCFF204DQZ, ENCFF581ZJL 7200902 ENCODE Processing Pipeline 1c2c73dcaf3d5995047ec9d24c4ed272 https://www.encodeproject.org/files/ENCFF415ZVO/@@download/ENCFF415ZVO.bed.gz hg19 released ENCFF701JMF bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB691BTB DNA False 2016-06-13 ENCODE 1 ENCFF073BGI, ENCFF581ZJL 6933666 ENCODE Processing Pipeline 1620ca7375f85882e35e913c96ae9ec5 https://www.encodeproject.org/files/ENCFF701JMF/@@download/ENCFF701JMF.bed.gz hg19 released ENCFF328KFN bed narrowPeak peaks ENCSR563YDA ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDGF-human ENCAB691BTB DNA False 2016-06-13 ENCODE 2 ENCFF051LWI, ENCFF204DQZ 7070560 ENCODE Processing Pipeline d09fa112a2f46a52ff767bac569d3e8d https://www.encodeproject.org/files/ENCFF328KFN/@@download/ENCFF328KFN.bed.gz hg19 released ENCFF688ELV bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human ENCAB118PND DNA False 2018-01-26 ENCODE 2 ENCFF537VTS, ENCFF879OQC 5214652 ENCODE Processing Pipeline 1e982fdcdd0d5a33ec084f5e05996c50 https://www.encodeproject.org/files/ENCFF688ELV/@@download/ENCFF688ELV.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF734ODE bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human ENCAB118PND DNA False 2018-01-26 ENCODE 1 ENCFF335IPE, ENCFF698CGK 5398160 ENCODE Processing Pipeline 0785087fd5337e650d276effc250e9d1 https://www.encodeproject.org/files/ENCFF734ODE/@@download/ENCFF734ODE.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF233END bed narrowPeak peaks ENCSR776CYN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZFP36-human ENCAB118PND DNA False 2018-01-26 ENCODE 1, 2 ENCFF335IPE, ENCFF537VTS, ENCFF698CGK, ENCFF879OQC 6583655 ENCODE Processing Pipeline 33004bcb8a0a22e15068fa9b27037dc6 https://www.encodeproject.org/files/ENCFF233END/@@download/ENCFF233END.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO partially characterized antibody ENCFF789HHG bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human ENCAB228JAJ DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF224GTG, ENCFF321CYT 4774722 ENCODE Processing Pipeline 2b980e8a647d156579335201a39ef984 https://www.encodeproject.org/files/ENCFF789HHG/@@download/ENCFF789HHG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF690XXK bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human ENCAB228JAJ DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF818HIH 5047502 ENCODE Processing Pipeline fa771e766c74b2ac2c02538825850bed https://www.encodeproject.org/files/ENCFF690XXK/@@download/ENCFF690XXK.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF151HYU bed narrowPeak peaks ENCSR047LSJ ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAF15-human ENCAB228JAJ DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF224GTG, ENCFF321CYT, ENCFF456BYT, ENCFF818HIH 6362327 ENCODE Processing Pipeline c316effd94b7f25ca9f99bbb89663fa4 https://www.encodeproject.org/files/ENCFF151HYU/@@download/ENCFF151HYU.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity ENCFF001VMY bed narrowPeak peaks ENCSR000EWL ChIP-seq EFO:0002067 K562 cell line Homo sapiens E2F4-human ENCAB000AFV DNA see document see document False 2011-10-29 ENCODE 139981 Peggy Farnham, USC 45f5d92b80be9bf03731e22373b94415 https://www.encodeproject.org/files/ENCFF001VMY/@@download/ENCFF001VMY.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth, missing control alignments ENCFF001VMF bed narrowPeak peaks ENCSR000DOA ChIP-seq EFO:0002067 K562 cell line Homo sapiens CCNT2-human ENCAB000AEY DNA see document see document False 2011-10-29 ENCODE 839229 Kevin Struhl, HMS 2c31d012aa97330d5e1b6cf2f24ebd8b https://www.encodeproject.org/files/ENCFF001VMF/@@download/ENCFF001VMF.bed.gz hg19 released mixed read lengths, low read length biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VOR bed narrowPeak peaks ENCSR000DOH ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIRT6-human ENCAB000AKT DNA see document see document False 2011-10-29 ENCODE 11275 Kevin Struhl, HMS 4b8fa5ee502da30b76a77d4a727c3bc9 https://www.encodeproject.org/files/ENCFF001VOR/@@download/ENCFF001VOR.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VNC bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGS DNA see document see document False 2011-10-29 ENCODE 39459 Peggy Farnham, USC 0e1575e9d786484b0ea7761c0ce167c6 https://www.encodeproject.org/files/ENCFF001VNC/@@download/ENCFF001VNC.bed.gz hg19 archived borderline replicate concordance biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth, missing control alignments ENCFF281ONW bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGS DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF461UBM 1358195 ENCODE Processing Pipeline 99965bf4d8aaec0d25e61565757d4476 https://www.encodeproject.org/files/ENCFF281ONW/@@download/ENCFF281ONW.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth, missing control alignments ENCFF942MUF bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGS DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF465DSP 3449310 ENCODE Processing Pipeline c6502e4f08098ed2b9766c2dfff6b5c2 https://www.encodeproject.org/files/ENCFF942MUF/@@download/ENCFF942MUF.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth, missing control alignments ENCFF830VFD bed narrowPeak peaks ENCSR000EWM ChIP-seq EFO:0002067 K562 cell line Homo sapiens GATA1-human ENCAB000AGS DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF461UBM, ENCFF465DSP 4532459 ENCODE Processing Pipeline 9978ba134c5d3cb344a45f38e35ec117 https://www.encodeproject.org/files/ENCFF830VFD/@@download/ENCFF830VFD.bed.gz hg19 released borderline replicate concordance biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth, missing control alignments ENCFF001VOU bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 9245 Sherman Weissman, Yale 393ddc6c51b4af7c63d36664c0020a0f https://www.encodeproject.org/files/ENCFF001VOU/@@download/ENCFF001VOU.bed.gz hg19 archived borderline replicate concordance, control low read depth biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF873CLE bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1 ENCFF457SCP, ENCFF998GMZ 2276128 ENCODE Processing Pipeline 41c577d36fc12da6bd7db479b80ba431 https://www.encodeproject.org/files/ENCFF873CLE/@@download/ENCFF873CLE.bed.gz hg19 released borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF081YAN bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 2 ENCFF636ISQ, ENCFF998GMZ 2161600 ENCODE Processing Pipeline 2ff4a5f8741d7d3809aec33b42266ba6 https://www.encodeproject.org/files/ENCFF081YAN/@@download/ENCFF081YAN.bed.gz hg19 released borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF881JMT bed narrowPeak peaks ENCSR000FAU ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon alpha 6.0 hour STAT1-human ENCAB000ALF DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF457SCP, ENCFF636ISQ, ENCFF998GMZ 4179661 ENCODE Processing Pipeline 2e7fccb0eaf1844ca652272840672c89 https://www.encodeproject.org/files/ENCFF881JMT/@@download/ENCFF881JMT.bed.gz hg19 released borderline replicate concordance, control low read depth biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001VNY bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human ENCAB000AJC DNA see document see document False 2011-10-29 ENCODE 167203 Michael Snyder, Stanford 8f67ba8132ba74601046c928a46fac93 https://www.encodeproject.org/files/ENCFF001VNY/@@download/ENCFF001VNY.bed.gz hg19 archived borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth extremely low read depth ENCFF003WYE bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human ENCAB000AJC DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF896HUN 1121347 ENCODE Processing Pipeline 0075b41ce937ac2948c49cd47fa765f0 https://www.encodeproject.org/files/ENCFF003WYE/@@download/ENCFF003WYE.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF690KLI bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human ENCAB000AJC DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ, ENCFF896HUN 4403531 ENCODE Processing Pipeline cf8271a0bae3c1d1059e3d7faa8121bc https://www.encodeproject.org/files/ENCFF690KLI/@@download/ENCFF690KLI.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF711NWL bed narrowPeak peaks ENCSR000EGR ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYA-human ENCAB000AJC DNA see document see document False 2011-10-29 ENCODE 1 ENCFF408YZH, ENCFF428ISY, ENCFF679XFJ 2689320 ENCODE Processing Pipeline 4c85eb9984b66a7cc5fcda6d28d945d0 https://www.encodeproject.org/files/ENCFF711NWL/@@download/ENCFF711NWL.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length, insufficient read depth extremely low read depth ENCFF001SYV bed broadPeak peaks ENCSR000ATU ChIP-seq EFO:0002067 K562 cell line Homo sapiens CBX2-human ENCAB000AEV DNA see document see document False 2012-08-06 ENCODE 423186 Bradley Bernstein, Broad 2c8ea63b560779f0febfc27b1004de8b https://www.encodeproject.org/files/ENCFF001SYV/@@download/ENCFF001SYV.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length missing derived_from, missing raw data in replicate poor library complexity, insufficient read depth, severe bottlenecking ENCFF001VMH bed narrowPeak peaks ENCSR000FAI ChIP-seq EFO:0002067 K562 cell line Homo sapiens FOS-human ENCAB000AEQ DNA see document see document False 2011-10-29 ENCODE 103402 Sherman Weissman, Yale b271e724564862010afa14bee0b59a10 https://www.encodeproject.org/files/ENCFF001VMH/@@download/ENCFF001VMH.bed.gz hg19 released biological replicates with identical biosample, duplicate lane review, missing derived_from insufficient read length ENCFF001VMA bed narrowPeak peaks ENCSR000DOK ChIP-seq EFO:0002067 K562 cell line Homo sapiens BDP1-human ENCAB000AEI DNA see document see document False 2011-10-29 ENCODE 8976 Kevin Struhl, HMS 77ddebdfd55e26dbf3ad35aa4d74749f https://www.encodeproject.org/files/ENCFF001VMA/@@download/ENCFF001VMA.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VNI bed narrowPeak peaks ENCSR000DOB ChIP-seq EFO:0002067 K562 cell line Homo sapiens HMGN3-human ENCAB000AHN DNA see document see document False 2011-10-29 ENCODE 709237 Kevin Struhl, HMS fca4dfee5f42fcc3e629200d9523a39c https://www.encodeproject.org/files/ENCFF001VNI/@@download/ENCFF001VNI.bed.gz hg19 released mixed read lengths, low read length biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001SZW bed broadPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human ENCAB000AJV DNA see document see document False 2012-08-06 ENCODE 271621 Bradley Bernstein, Broad bad872a118472f6f2d6a471a53ca24a6 https://www.encodeproject.org/files/ENCFF001SZW/@@download/ENCFF001SZW.bed.gz hg19 archived control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length missing derived_from ENCFF237DHH bed narrowPeak peaks ENCSR000ATZ ChIP-seq EFO:0002067 K562 cell line Homo sapiens KAT2B-human ENCAB000AJV DNA see document see document False 2012-08-06 ENCODE 1 ENCFF574XYY, ENCFF645NAU 4165936 ENCODE Processing Pipeline 6d3d34236cac327fb84020fdc4290f13 https://www.encodeproject.org/files/ENCFF237DHH/@@download/ENCFF237DHH.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length ENCFF001SZU bed broadPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human ENCAB000AJL DNA see document see document False 2012-08-06 ENCODE 861263 Bradley Bernstein, Broad da1c6c67989a94b183501eff6601cd54 https://www.encodeproject.org/files/ENCFF001SZU/@@download/ENCFF001SZU.bed.gz hg19 archived control low read depth, inconsistent platforms, low read length missing derived_from ENCFF714NDI bed narrowPeak peaks ENCSR000AVE ChIP-seq EFO:0002067 K562 cell line Homo sapiens WHSC1-human ENCAB000AJL DNA see document see document False 2012-08-06 ENCODE 1 ENCFF180HYH, ENCFF574XYY 5600436 ENCODE Processing Pipeline e404f9cee25f574cd50e7e6435f4eeea https://www.encodeproject.org/files/ENCFF714NDI/@@download/ENCFF714NDI.bed.gz hg19 released control low read depth, inconsistent platforms, low read length ENCFF001SYY bed broadPeak peaks ENCSR000ATL ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHD4-human ENCAB276UJU, ENCAB000AFH DNA see document see document False 2012-08-06 ENCODE 234598 Bradley Bernstein, Broad 723685ebf6ca0fdcd5b0e35551c68475 https://www.encodeproject.org/files/ENCFF001SYY/@@download/ENCFF001SYY.bed.gz hg19 archived mixed read lengths, inconsistent platforms, low read length missing derived_from ENCFF001SZP bed broadPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB649LYF DNA see document see document False 2012-03-06 ENCODE 2470892 Bradley Bernstein, Broad d0026a52d6bea2c296b0363ea5872197 https://www.encodeproject.org/files/ENCFF001SZP/@@download/ENCFF001SZP.bed.gz hg19 archived control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing derived_from, missing raw data in replicate insufficient replicate concordance ENCFF445XTX bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB649LYF DNA see document see document False 2012-03-06 ENCODE 1, 2 ENCFF245PJA, ENCFF552DDV, ENCFF564MCX, ENCFF574XYY 6593091 ENCODE Processing Pipeline db83c687c4c3371f81aebb89beb9fc56 https://www.encodeproject.org/files/ENCFF445XTX/@@download/ENCFF445XTX.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF624ZMB bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB649LYF DNA see document see document False 2012-03-06 ENCODE 2 ENCFF245PJA, ENCFF564MCX 4089103 ENCODE Processing Pipeline ea82d4eed548e69a4de334be39dbb6d8 https://www.encodeproject.org/files/ENCFF624ZMB/@@download/ENCFF624ZMB.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF200WFO bed narrowPeak peaks ENCSR000AQF ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC1-human ENCAB649LYF DNA see document see document False 2012-03-06 ENCODE 1 ENCFF245PJA, ENCFF552DDV, ENCFF574XYY 6262092 ENCODE Processing Pipeline 584d30694373b6331099acf9088ef033 https://www.encodeproject.org/files/ENCFF200WFO/@@download/ENCFF200WFO.bed.gz hg19 released control low read depth, inconsistent platforms, low read depth, mild to moderate bottlenecking, moderate library complexity, low read length biological replicates with identical biosample, missing raw data in replicate insufficient replicate concordance ENCFF001SZA bed broadPeak peaks ENCSR000AQD ChIP-seq EFO:0002067 K562 cell line Homo sapiens CHD1-human ENCAB000AFE DNA see document see document False 2012-03-06 ENCODE 3172110 Bradley Bernstein, Broad 913aef020715611097d3fb4fe0d2df2c https://www.encodeproject.org/files/ENCFF001SZA/@@download/ENCFF001SZA.bed.gz hg19 archived inconsistent platforms, mild to moderate bottlenecking, low read length, moderate library complexity missing derived_from, missing raw data in replicate ENCFF113EKC bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6766643 ENCODE Processing Pipeline 004b8c0ba595469c62a2df0a692f1732 https://www.encodeproject.org/files/ENCFF113EKC/@@download/ENCFF113EKC.bed.gz hg19 released mild to moderate bottlenecking ENCFF288BMB bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6894601 ENCODE Processing Pipeline 3001eca0f6ac4c5cc4f2cb18927cab12 https://www.encodeproject.org/files/ENCFF288BMB/@@download/ENCFF288BMB.bed.gz hg19 released mild to moderate bottlenecking ENCFF406JKC bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 7143616 ENCODE Processing Pipeline b8def5f6e578dcf33f82a4d9ce98f8a0 https://www.encodeproject.org/files/ENCFF406JKC/@@download/ENCFF406JKC.bed.gz hg19 released mild to moderate bottlenecking ENCFF138RWJ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF986GTB 6970449 ENCODE Processing Pipeline afd34a6b4a486fa0b6feb85b2992031d https://www.encodeproject.org/files/ENCFF138RWJ/@@download/ENCFF138RWJ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF263SML bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF615FDE 6840897 ENCODE Processing Pipeline 3d9c51ef3db7280749befdb5d623ea1f https://www.encodeproject.org/files/ENCFF263SML/@@download/ENCFF263SML.bed.gz hg19 archived mild to moderate bottlenecking ENCFF978MYZ bed narrowPeak peaks ENCSR998AJK ChIP-seq EFO:0002067 K562 cell line Homo sapiens NRF1-human ENCAB000BLK DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF615FDE, ENCFF986GTB 7149174 ENCODE Processing Pipeline d608454c08c8de0f51d7972f7aca6387 https://www.encodeproject.org/files/ENCFF978MYZ/@@download/ENCFF978MYZ.bed.gz hg19 archived mild to moderate bottlenecking ENCFF845TET bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1 ENCFF009ZXV, ENCFF629YBN 6765258 ENCODE Processing Pipeline e7f259ed3066ecddb659b324d47541a4 https://www.encodeproject.org/files/ENCFF845TET/@@download/ENCFF845TET.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF026SKI bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human ENCAB728YTO DNA False 2016-06-13 ENCODE 2 ENCFF629YBN, ENCFF772DPI 6500124 ENCODE Processing Pipeline e9deff36e8ad4de02867558a33ef1222 https://www.encodeproject.org/files/ENCFF026SKI/@@download/ENCFF026SKI.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF835LBQ bed narrowPeak peaks ENCSR290MUH ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-GABPA-human ENCAB728YTO DNA False 2016-06-13 ENCODE 1, 2 ENCFF009ZXV, ENCFF629YBN, ENCFF772DPI 7040983 ENCODE Processing Pipeline 0660ffc5d585df2a9dae9ae59d22e30d https://www.encodeproject.org/files/ENCFF835LBQ/@@download/ENCFF835LBQ.bed.gz hg19 released missing genetic modification characterization, low read depth ENCFF074FFL bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB170GTK DNA False 2016-10-31 ENCODE 1, 2 ENCFF051LWI, ENCFF406KFP, ENCFF581ZJL, ENCFF686HTQ 7065052 ENCODE Processing Pipeline 1e856749a0963af3924232f5d1184597 https://www.encodeproject.org/files/ENCFF074FFL/@@download/ENCFF074FFL.bed.gz hg19 released mild to moderate bottlenecking ENCFF888AZU bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB170GTK DNA False 2016-10-31 ENCODE 1 ENCFF406KFP, ENCFF581ZJL 6893480 ENCODE Processing Pipeline aa22323020872da6f25c0326969b9c18 https://www.encodeproject.org/files/ENCFF888AZU/@@download/ENCFF888AZU.bed.gz hg19 released mild to moderate bottlenecking ENCFF810MGC bed narrowPeak peaks ENCSR075HTM ChIP-seq EFO:0002067 K562 cell line Homo sapiens HDAC2-human ENCAB170GTK DNA False 2016-10-31 ENCODE 2 ENCFF051LWI, ENCFF686HTQ 6915987 ENCODE Processing Pipeline a3c8fdc3ddfd955a8ff0e3dc31180d4d https://www.encodeproject.org/files/ENCFF810MGC/@@download/ENCFF810MGC.bed.gz hg19 released mild to moderate bottlenecking ENCFF541RTC bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB039LJW DNA False 2016-06-14 ENCODE 2 ENCFF051LWI, ENCFF620XKU 7097716 ENCODE Processing Pipeline e6c25db4b623fa7b1eff41e9a7ac6536 https://www.encodeproject.org/files/ENCFF541RTC/@@download/ENCFF541RTC.bed.gz hg19 released ENCFF513IHI bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB039LJW DNA False 2016-06-14 ENCODE 1, 2 ENCFF051LWI, ENCFF581ZJL, ENCFF620XKU, ENCFF676EUR 7276138 ENCODE Processing Pipeline 832048d93b84753e18b2f10067363414 https://www.encodeproject.org/files/ENCFF513IHI/@@download/ENCFF513IHI.bed.gz hg19 released ENCFF891UIQ bed narrowPeak peaks ENCSR587OQL ChIP-seq EFO:0002067 K562 cell line Homo sapiens SMARCA4-human ENCAB039LJW DNA False 2016-06-14 ENCODE 1 ENCFF581ZJL, ENCFF676EUR 7092260 ENCODE Processing Pipeline a67287c32c3af5831e07a97dd0c47456 https://www.encodeproject.org/files/ENCFF891UIQ/@@download/ENCFF891UIQ.bed.gz hg19 released ENCFF772ITA bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human ENCAB069FYQ DNA False 2018-01-26 ENCODE 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV 6227217 ENCODE Processing Pipeline d5e541a6a74160a9dbfcdfbe1098c02e https://www.encodeproject.org/files/ENCFF772ITA/@@download/ENCFF772ITA.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF085CGF bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human ENCAB069FYQ DNA False 2018-01-26 ENCODE 2, 3 ENCFF243VKO, ENCFF262CJE, ENCFF506DFV, ENCFF562COY 7088043 ENCODE Processing Pipeline 9cbc7912f0cebe94ebd9e4e99407290e https://www.encodeproject.org/files/ENCFF085CGF/@@download/ENCFF085CGF.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF563QBT bed narrowPeak peaks ENCSR718SDE ChIP-seq EFO:0002067 K562 cell line Homo sapiens RLF-human ENCAB069FYQ DNA False 2018-01-26 ENCODE 2 ENCFF262CJE, ENCFF506DFV, ENCFF562COY 6838700 ENCODE Processing Pipeline 47e85c613e641263ed4641a1ac76de4d https://www.encodeproject.org/files/ENCFF563QBT/@@download/ENCFF563QBT.bed.gz hg19 released low read depth experiment not submitted to GEO partially characterized antibody missing control alignments ENCFF001VOZ bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB000ALO DNA see document see document False 2011-10-29 ENCODE 1044594 Michael Snyder, Stanford 7fd1ea6d689f63e143cbf61acbf5539b https://www.encodeproject.org/files/ENCFF001VOZ/@@download/ENCFF001VOZ.bed.gz hg19 archived low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample, missing derived_from ENCFF028EAN bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB000ALO DNA see document see document False 2011-10-29 ENCODE 1 ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 4900137 ENCODE Processing Pipeline b26dddd8db39fbaa02cca337b263fc5e https://www.encodeproject.org/files/ENCFF028EAN/@@download/ENCFF028EAN.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF056GMV bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB000ALO DNA see document see document False 2011-10-29 ENCODE 2 ENCFF093JMK, ENCFF498SAC 4385525 ENCODE Processing Pipeline 9a624a810a31b4f45f9bb4359ddf1fc8 https://www.encodeproject.org/files/ENCFF056GMV/@@download/ENCFF056GMV.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF567HZK bed narrowPeak peaks ENCSR000EHB ChIP-seq EFO:0002067 K562 cell line Homo sapiens TAL1-human ENCAB000ALO DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF093JMK, ENCFF498SAC, ENCFF613ODZ, ENCFF732TLR 5427089 ENCODE Processing Pipeline 7ac3b1da5d1f17759d3653ce3dd1e3f4 https://www.encodeproject.org/files/ENCFF567HZK/@@download/ENCFF567HZK.bed.gz hg19 released low read depth, inconsistent target of control experiment, low read length biological replicates with identical biosample ENCFF733BAD bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 2 ENCFF051LWI, ENCFF690CWG 6810880 ENCODE Processing Pipeline 1099a7eba7de19b93fa68046112910e4 https://www.encodeproject.org/files/ENCFF733BAD/@@download/ENCFF733BAD.bed.gz hg19 released low read depth ENCFF649STG bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 1, 2 ENCFF051LWI, ENCFF411PRP, ENCFF581ZJL, ENCFF690CWG 7225762 ENCODE Processing Pipeline d3445bb552d890141b649942e051b032 https://www.encodeproject.org/files/ENCFF649STG/@@download/ENCFF649STG.bed.gz hg19 released low read depth ENCFF810EAC bed narrowPeak peaks ENCSR798ILC ChIP-seq EFO:0002067 K562 cell line Homo sapiens NCOR1-human ENCAB025LCD DNA False 2016-11-30 ENCODE 1 ENCFF411PRP, ENCFF581ZJL 6721746 ENCODE Processing Pipeline 5cc4b114acb6825cc1974b8168d3c37e https://www.encodeproject.org/files/ENCFF810EAC/@@download/ENCFF810EAC.bed.gz hg19 released low read depth ENCFF998DOG bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 1 ENCFF331ARQ, ENCFF468BAA 4386773 ENCODE Processing Pipeline fbf22b1fa5c379715ba2c26fac7097af https://www.encodeproject.org/files/ENCFF998DOG/@@download/ENCFF998DOG.bed.gz hg19 released mixed read lengths, control low read depth, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF074NOU bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF331ARQ, ENCFF468BAA, ENCFF741YEW 4740714 ENCODE Processing Pipeline 156e0def1016e3c17aac62329795254a https://www.encodeproject.org/files/ENCFF074NOU/@@download/ENCFF074NOU.bed.gz hg19 released mixed read lengths, control low read depth, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF456MUP bed narrowPeak peaks ENCSR000EGT ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 6.0 hour IRF1-human ENCAB000AHX DNA see document see document False 2011-10-29 ENCODE 2 ENCFF331ARQ, ENCFF741YEW 2659144 ENCODE Processing Pipeline acdf1392520ee91f4bddbce05b2fea39 https://www.encodeproject.org/files/ENCFF456MUP/@@download/ENCFF456MUP.bed.gz hg19 released mixed read lengths, control low read depth, low read depth, low read length biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF072MHF bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human ENCAB476CFS DNA SDS formaldehyde False 2018-01-18 ENCODE 1, 2 ENCFF338SXL, ENCFF441IWC, ENCFF493QSH, ENCFF641CEP 7139944 ENCODE Processing Pipeline 0272228c7a5f6716852945bc3a7c0566 https://www.encodeproject.org/files/ENCFF072MHF/@@download/ENCFF072MHF.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF051SGG bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human ENCAB476CFS DNA SDS formaldehyde False 2018-01-18 ENCODE 1 ENCFF338SXL, ENCFF493QSH 6526722 ENCODE Processing Pipeline 286f34882824089be1fb41559efb60cb https://www.encodeproject.org/files/ENCFF051SGG/@@download/ENCFF051SGG.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF314NQZ bed narrowPeak peaks ENCSR848AOP ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM22-human ENCAB476CFS DNA SDS formaldehyde False 2018-01-18 ENCODE 2 ENCFF441IWC, ENCFF641CEP 6331282 ENCODE Processing Pipeline 12d3e1e4d51ac0d211ec5ef5685053da https://www.encodeproject.org/files/ENCFF314NQZ/@@download/ENCFF314NQZ.bed.gz hg19 released low read depth, low read length experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF001ULD bed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 1 1 13516 Richard Myers, HAIB e8c341b2125d2fe5ab3407ac204d73a4 https://www.encodeproject.org/files/ENCFF001ULD/@@download/ENCFF001ULD.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF001ULE bed broadPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 2 1 70059 Richard Myers, HAIB 947259a6b1a6f24d9fbfc54720926fd0 https://www.encodeproject.org/files/ENCFF001ULE/@@download/ENCFF001ULE.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read depth ENCFF521MOS bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 1 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM 4142355 ENCODE Processing Pipeline 585df9f882884542d2162608818d81f2 https://www.encodeproject.org/files/ENCFF521MOS/@@download/ENCFF521MOS.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF066ONU bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 2 ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 1856755 ENCODE Processing Pipeline 14200e538b452e7bd169c4e2b53985d9 https://www.encodeproject.org/files/ENCFF066ONU/@@download/ENCFF066ONU.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF738BIG bed narrowPeak peaks ENCSR000BNW ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 1, 2 ENCFF037BXU, ENCFF235CSW, ENCFF750MIM, ENCFF882JQN 4610777 ENCODE Processing Pipeline 512ab31f7689df6e2e25d6ab153dd82b https://www.encodeproject.org/files/ENCFF738BIG/@@download/ENCFF738BIG.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample insufficient read depth ENCFF243AWG bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human ENCAB728YTO DNA False 2017-01-31 ENCODE 1 ENCFF591PYL, ENCFF748QNI 6702271 ENCODE Processing Pipeline 48e73ba4a2edbd11ad5617c5bae35faa https://www.encodeproject.org/files/ENCFF243AWG/@@download/ENCFF243AWG.bed.gz hg19 released inconsistent platforms, missing genetic modification characterization, mild to moderate bottlenecking ENCFF258HYJ bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human ENCAB728YTO DNA False 2017-01-31 ENCODE 2 ENCFF591PYL, ENCFF632XPI 6525547 ENCODE Processing Pipeline 0707452f5158f3676955c29043b9816f https://www.encodeproject.org/files/ENCFF258HYJ/@@download/ENCFF258HYJ.bed.gz hg19 released inconsistent platforms, missing genetic modification characterization, mild to moderate bottlenecking ENCFF802GJA bed narrowPeak peaks ENCSR178DEG ChIP-seq EFO:0002067 K562 cell line Homo sapiens eGFP-NR2C1-human ENCAB728YTO DNA False 2017-01-31 ENCODE 1, 2 ENCFF591PYL, ENCFF632XPI, ENCFF748QNI 7225697 ENCODE Processing Pipeline 28a2fed7e3d9e6ceb65d3ffa54860502 https://www.encodeproject.org/files/ENCFF802GJA/@@download/ENCFF802GJA.bed.gz hg19 released inconsistent platforms, missing genetic modification characterization, mild to moderate bottlenecking ENCFF530LEM bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human ENCAB598VSJ DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF508DBG, ENCFF958RAN 5274330 ENCODE Processing Pipeline 2976755b3d2aaca90dab9b9f90bc820b https://www.encodeproject.org/files/ENCFF530LEM/@@download/ENCFF530LEM.bed.gz hg19 released low read depth, low read length ENCFF644TNS bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human ENCAB598VSJ DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF572OMD, ENCFF759PVZ 5160791 ENCODE Processing Pipeline 6bfa5f6bf5822a3bea2eb7fa002d3b3e https://www.encodeproject.org/files/ENCFF644TNS/@@download/ENCFF644TNS.bed.gz hg19 released low read depth, low read length ENCFF192IFJ bed narrowPeak peaks ENCSR051DXE ChIP-seq EFO:0002067 K562 cell line Homo sapiens FUS-human ENCAB598VSJ DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF508DBG, ENCFF572OMD, ENCFF759PVZ, ENCFF958RAN 6427776 ENCODE Processing Pipeline 9344208dd7f4d437d626e0d79ddafdbf https://www.encodeproject.org/files/ENCFF192IFJ/@@download/ENCFF192IFJ.bed.gz hg19 released low read depth, low read length ENCFF554MYS bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human ENCAB000BFY DNA SDS formaldehyde False 2018-01-16 ENCODE 1 ENCFF140KEX, ENCFF502LLI 5425583 ENCODE Processing Pipeline d8257879064125b49782be75467d4b28 https://www.encodeproject.org/files/ENCFF554MYS/@@download/ENCFF554MYS.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF467EXO bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human ENCAB000BFY DNA SDS formaldehyde False 2018-01-16 ENCODE 2 ENCFF098EOS, ENCFF325CNX 5193552 ENCODE Processing Pipeline 63bc6d85f90c43c4f9f17146535f7253 https://www.encodeproject.org/files/ENCFF467EXO/@@download/ENCFF467EXO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF016WHL bed narrowPeak peaks ENCSR603REQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens PCBP2-human ENCAB000BFY DNA SDS formaldehyde False 2018-01-16 ENCODE 1, 2 ENCFF098EOS, ENCFF140KEX, ENCFF325CNX, ENCFF502LLI 6682019 ENCODE Processing Pipeline fdf2f4c3d6786341452d6875749166e8 https://www.encodeproject.org/files/ENCFF016WHL/@@download/ENCFF016WHL.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO poor library complexity, severe bottlenecking ENCFF501SMZ bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human ENCAB000AVZ DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF456BYT, ENCFF573SRY 5315049 ENCODE Processing Pipeline 42017006100aada57107d4935adbead8 https://www.encodeproject.org/files/ENCFF501SMZ/@@download/ENCFF501SMZ.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF013REF bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human ENCAB000AVZ DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF321CYT, ENCFF514LUN 5482870 ENCODE Processing Pipeline 2f77da514212a67e6b9b46c0f1f7fb40 https://www.encodeproject.org/files/ENCFF013REF/@@download/ENCFF013REF.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF838LKB bed narrowPeak peaks ENCSR594BNR ChIP-seq EFO:0002067 K562 cell line Homo sapiens HNRNPL-human ENCAB000AVZ DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF321CYT, ENCFF456BYT, ENCFF514LUN, ENCFF573SRY 6696807 ENCODE Processing Pipeline bda0d47c90aa43da4a155d81eda82233 https://www.encodeproject.org/files/ENCFF838LKB/@@download/ENCFF838LKB.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF699AFV bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA False 2016-11-17 ENCODE 1 ENCFF115IJR, ENCFF581ZJL 6920391 ENCODE Processing Pipeline 3734147554a35fa56a7b48010c1acc1c https://www.encodeproject.org/files/ENCFF699AFV/@@download/ENCFF699AFV.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking ENCFF825OFB bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA False 2016-11-17 ENCODE 1, 2 ENCFF115IJR, ENCFF581ZJL, ENCFF719JNQ, ENCFF834TUP 7320849 ENCODE Processing Pipeline e93a9deadf9e512d2fc0472f2464bca1 https://www.encodeproject.org/files/ENCFF825OFB/@@download/ENCFF825OFB.bed.gz hg19 archived borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking ENCFF134OWN bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA False 2016-11-17 ENCODE 1, 2 ENCFF160VXC, ENCFF521MJN, ENCFF719JNQ, ENCFF834TUP 7369817 ENCODE Processing Pipeline a6b3812bc035338f05a99e996dc4b4c6 https://www.encodeproject.org/files/ENCFF134OWN/@@download/ENCFF134OWN.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking ENCFF059LBQ bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA False 2016-11-17 ENCODE 1 ENCFF160VXC, ENCFF521MJN, ENCFF834TUP 7254816 ENCODE Processing Pipeline 308d63dee50ea770d3a9870c122a6492 https://www.encodeproject.org/files/ENCFF059LBQ/@@download/ENCFF059LBQ.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking ENCFF789DUE bed narrowPeak peaks ENCSR608XTF ChIP-seq EFO:0002067 K562 cell line Homo sapiens RNF2-human ENCAB790JUW DNA False 2016-11-17 ENCODE 2 ENCFF719JNQ, ENCFF834TUP 7334096 ENCODE Processing Pipeline dc8ca93624ffa5580dd9bdb280637134 https://www.encodeproject.org/files/ENCFF789DUE/@@download/ENCFF789DUE.bed.gz hg19 released borderline replicate concordance, inconsistent platforms, mild to moderate bottlenecking ENCFF730DRK bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human ENCAB047USE DNA SDS formaldehyde False 2018-01-22 ENCODE 2 ENCFF594WOK, ENCFF922JGL 4192638 ENCODE Processing Pipeline e486321389bad03272e7499f7d4b681c https://www.encodeproject.org/files/ENCFF730DRK/@@download/ENCFF730DRK.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF871OPM bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human ENCAB047USE DNA SDS formaldehyde False 2018-01-22 ENCODE 1, 2 ENCFF594WOK, ENCFF851QFR, ENCFF922JGL, ENCFF957SXO 6432704 ENCODE Processing Pipeline c74b62013206b23ed044cd7cc0a405ea https://www.encodeproject.org/files/ENCFF871OPM/@@download/ENCFF871OPM.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF713DPH bed narrowPeak peaks ENCSR423FCW ChIP-seq EFO:0002067 K562 cell line Homo sapiens RBM14-human ENCAB047USE DNA SDS formaldehyde False 2018-01-22 ENCODE 1 ENCFF851QFR, ENCFF957SXO 5377602 ENCODE Processing Pipeline b2aa8ae86ae6ab9b127a951cb49416f1 https://www.encodeproject.org/files/ENCFF713DPH/@@download/ENCFF713DPH.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity experiment not submitted to GEO insufficient read depth missing control alignments ENCFF001VNM bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 842930 Michael Snyder, Stanford 767c90a87cb34d7f74ae69fbd816cf74 https://www.encodeproject.org/files/ENCFF001VNM/@@download/ENCFF001VNM.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample, missing derived_from control insufficient read depth ENCFF846FXF bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 2 ENCFF287WTN, ENCFF293UAO 4677267 ENCODE Processing Pipeline 5d04eabf7d801827ba9dd428b67b3a2a https://www.encodeproject.org/files/ENCFF846FXF/@@download/ENCFF846FXF.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF390PTY bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 1 ENCFF287WTN, ENCFF389FCP 4432438 ENCODE Processing Pipeline ab2e3391da9694f3f4d7e4e25f9d67bf https://www.encodeproject.org/files/ENCFF390PTY/@@download/ENCFF390PTY.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF370WUU bed narrowPeak peaks ENCSR000EGK ChIP-seq EFO:0002067 K562 cell line Homo sapiens interferon gamma 30.0 minute IRF1-human ENCAB000AHX DNA see document see document False 2012-05-14 ENCODE 1, 2 ENCFF287WTN, ENCFF293UAO, ENCFF389FCP 5360627 ENCODE Processing Pipeline cccf95223313c722121027af3403818d https://www.encodeproject.org/files/ENCFF370WUU/@@download/ENCFF370WUU.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length biological replicates with identical biosample control insufficient read depth ENCFF001VNF bed narrowPeak peaks ENCSR000DOE ChIP-seq EFO:0002067 K562 cell line Homo sapiens GTF2B-human ENCAB000AHD DNA see document see document False 2011-10-29 ENCODE 194296 Kevin Struhl, HMS 30cdabd6bbf43b482c8459b675f20ebe https://www.encodeproject.org/files/ENCFF001VNF/@@download/ENCFF001VNF.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF001VOO bed narrowPeak peaks ENCSR000DOI ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR3A-human ENCAB000AKL DNA see document see document False 2011-10-29 ENCODE 19459 Kevin Struhl, HMS c5b18252c20c6aebc467656680c51d20 https://www.encodeproject.org/files/ENCFF001VOO/@@download/ENCFF001VOO.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VMD bed narrowPeak peaks ENCSR000DOC ChIP-seq EFO:0002067 K562 cell line Homo sapiens BRF2-human ENCAB000AEN DNA see document see document False 2011-10-29 ENCODE 664 Kevin Struhl, HMS 4932aa8b0f3f34a2c5fe3decb67eb76f https://www.encodeproject.org/files/ENCFF001VMD/@@download/ENCFF001VMD.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VPM bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human ENCAB000AMT DNA see document see document False 2011-10-29 ENCODE 47241 Peggy Farnham, USC de9000f06a3f75322cd7456ef370fb0e https://www.encodeproject.org/files/ENCFF001VPM/@@download/ENCFF001VPM.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF051FKL bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human ENCAB000AMT DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF362BFL 3582959 ENCODE Processing Pipeline d37e6204205236600c1cd7fc27b279c0 https://www.encodeproject.org/files/ENCFF051FKL/@@download/ENCFF051FKL.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF100FXA bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human ENCAB000AMT DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF221GJM 4035379 ENCODE Processing Pipeline c3ae106011943b7122e307a0f977bc5b https://www.encodeproject.org/files/ENCFF100FXA/@@download/ENCFF100FXA.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF537UES bed narrowPeak peaks ENCSR000EWN ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF263-human ENCAB000AMT DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF221GJM, ENCFF362BFL 5931174 ENCODE Processing Pipeline dabddf6f455929722bd64e2fc6242da2 https://www.encodeproject.org/files/ENCFF537UES/@@download/ENCFF537UES.bed.gz hg19 released biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VOK bed narrowPeak peaks ENCSR000EHF ChIP-seq EFO:0002067 K562 cell line Homo sapiens POLR2AphosphoS2-human ENCAB000AOB DNA see document see document False 2011-10-29 ENCODE 1227266 Michael Snyder, Stanford 3dce75d663db7e3d0db775c02bba0fd2 https://www.encodeproject.org/files/ENCFF001VOK/@@download/ENCFF001VOK.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VNX bed narrowPeak peaks ENCSR000FAF ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFE2-human ENCAB000AJA DNA see document see document False 2011-10-29 ENCODE 29060 Sherman Weissman, Yale 3d953871c7379fe1b0ce7a5c0776b24e https://www.encodeproject.org/files/ENCFF001VNX/@@download/ENCFF001VNX.bed.gz hg19 released biological replicates with identical biosample, missing derived_from insufficient read length ENCFF001VNZ bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human ENCAB000AJD DNA see document see document False 2011-10-29 ENCODE 373965 Michael Snyder, Stanford 8c433880d36d2a0b9ffee991cba1904e https://www.encodeproject.org/files/ENCFF001VNZ/@@download/ENCFF001VNZ.bed.gz hg19 archived mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample, missing derived_from insufficient read length extremely low read depth ENCFF180NNF bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human ENCAB000AJD DNA see document see document False 2011-10-29 ENCODE 2 ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 1061408 ENCODE Processing Pipeline 5c9072fe36bd7389f2865e50f52d2cf5 https://www.encodeproject.org/files/ENCFF180NNF/@@download/ENCFF180NNF.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF193FRQ bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human ENCAB000AJD DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ, ENCFF767RBF 2482503 ENCODE Processing Pipeline 21f7fdf7937f1054195cfa1370ae3445 https://www.encodeproject.org/files/ENCFF193FRQ/@@download/ENCFF193FRQ.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF570JVX bed narrowPeak peaks ENCSR000EGQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens NFYB-human ENCAB000AJD DNA see document see document False 2011-10-29 ENCODE 1 ENCFF198JIR, ENCFF408YZH, ENCFF679XFJ 1050923 ENCODE Processing Pipeline ca2172ab129944366ef6e528a0d83bcf https://www.encodeproject.org/files/ENCFF570JVX/@@download/ENCFF570JVX.bed.gz hg19 released mild to moderate bottlenecking, moderate library complexity biological replicates with identical biosample insufficient read length extremely low read depth ENCFF001VPO bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMV DNA see document see document False 2011-10-29 ENCODE 130531 Peggy Farnham, USC 72c40b7f43274ade845df679cb3679b3 https://www.encodeproject.org/files/ENCFF001VPO/@@download/ENCFF001VPO.bed.gz hg19 archived borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample, missing derived_from ENCFF479ZWB bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMV DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF826BOX 5855561 ENCODE Processing Pipeline edd9eb1c92b6ea69c50d79c78e91dcc7 https://www.encodeproject.org/files/ENCFF479ZWB/@@download/ENCFF479ZWB.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample ENCFF854CCF bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMV DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF943KAZ 6238769 ENCODE Processing Pipeline 31834bde4e421dc304e7711837e58986 https://www.encodeproject.org/files/ENCFF854CCF/@@download/ENCFF854CCF.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample ENCFF904PBE bed narrowPeak peaks ENCSR000EVX ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMV DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF826BOX, ENCFF943KAZ 6744439 ENCODE Processing Pipeline ff87019917a4d03f518d2dd9b1b3cf0a https://www.encodeproject.org/files/ENCFF904PBE/@@download/ENCFF904PBE.bed.gz hg19 released borderline replicate concordance, low read depth, mild to moderate bottlenecking, low read length, moderate library complexity biological replicates with identical biosample ENCFF001VPE bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human ENCAB000AMA DNA see document see document False 2011-10-29 ENCODE 9304 Peggy Farnham, USC d77f4e16aa46dd3955b05e97b773c8d5 https://www.encodeproject.org/files/ENCFF001VPE/@@download/ENCFF001VPE.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF342EJU bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human ENCAB000AMA DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF396QHD 1846008 ENCODE Processing Pipeline 2204adb7de4c87af2ca746cd3217546a https://www.encodeproject.org/files/ENCFF342EJU/@@download/ENCFF342EJU.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF837CQV bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human ENCAB000AMA DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF205OOU 2577171 ENCODE Processing Pipeline 22d2b8db8c9b6fb4ede4fec6f30d96fd https://www.encodeproject.org/files/ENCFF837CQV/@@download/ENCFF837CQV.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF841ZNM bed narrowPeak peaks ENCSR000EWH ChIP-seq EFO:0002067 K562 cell line Homo sapiens NR2C2-human ENCAB000AMA DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF205OOU, ENCFF396QHD 4367294 ENCODE Processing Pipeline 2908d011585f5d2341ef66972d32ad91 https://www.encodeproject.org/files/ENCFF841ZNM/@@download/ENCFF841ZNM.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF001ULB bed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 1 1 156027 Richard Myers, HAIB 4fcd396a1d5466ba5215c6e26e0025d4 https://www.encodeproject.org/files/ENCFF001ULB/@@download/ENCFF001ULB.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001ULC bed broadPeak peaks ENCSR000BGX ChIP-seq EFO:0002067 K562 cell line Homo sapiens SIX5-human ENCAB000AKV DNA see document see document False 2011-07-18 ENCODE 2 1 175557 Richard Myers, HAIB 9da090750fbd5f57a93b70559a0b6ac5 https://www.encodeproject.org/files/ENCFF001ULC/@@download/ENCFF001ULC.bed.gz hg19 released low read length biological replicates with identical biosample, missing derived_from ENCFF001VPN bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMU DNA see document see document False 2011-10-29 ENCODE 6987 Peggy Farnham, USC 486d091c324ba33cf3e46740180ccdf7 https://www.encodeproject.org/files/ENCFF001VPN/@@download/ENCFF001VPN.bed.gz hg19 archived biological replicates with identical biosample, missing derived_from insufficient read length, insufficient read depth ENCFF556HBG bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMU DNA see document see document False 2011-10-29 ENCODE 1 ENCFF051ZZR, ENCFF232PMQ 3877075 ENCODE Processing Pipeline 7b1aef55c64986987534c8007ecdb9d7 https://www.encodeproject.org/files/ENCFF556HBG/@@download/ENCFF556HBG.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF337RTD bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMU DNA see document see document False 2011-10-29 ENCODE 2 ENCFF051ZZR, ENCFF656PTN 4049903 ENCODE Processing Pipeline 34a201468fe2cc830b77ab03cb4dab1e https://www.encodeproject.org/files/ENCFF337RTD/@@download/ENCFF337RTD.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF565OZP bed narrowPeak peaks ENCSR000EWE ChIP-seq EFO:0002067 K562 cell line Homo sapiens ZNF274-human ENCAB000AMU DNA see document see document False 2011-10-29 ENCODE 1, 2 ENCFF051ZZR, ENCFF232PMQ, ENCFF656PTN 5185896 ENCODE Processing Pipeline fc998cd8fd37762830baf54b29fc2691 https://www.encodeproject.org/files/ENCFF565OZP/@@download/ENCFF565OZP.bed.gz hg19 released biological replicates with identical biosample insufficient read length, insufficient read depth ENCFF116JZW bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB904KUI DNA False 2014-07-07 ENCODE 1 ENCFF581ZJL, ENCFF686NWE 6978919 ENCODE Processing Pipeline cf5c9590a33d846f803d14df40f54a91 https://www.encodeproject.org/files/ENCFF116JZW/@@download/ENCFF116JZW.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF267RGU bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB904KUI DNA False 2014-07-07 ENCODE 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL 7085717 ENCODE Processing Pipeline 86e12d6a6279d291ed62cc05f1c9411f https://www.encodeproject.org/files/ENCFF267RGU/@@download/ENCFF267RGU.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF876EHZ bed narrowPeak peaks ENCSR137ZMQ ChIP-seq EFO:0002067 K562 cell line Homo sapiens REST-human ENCAB904KUI DNA False 2014-07-07 ENCODE 1, 2 ENCFF051LWI, ENCFF541OZF, ENCFF581ZJL, ENCFF686NWE 7253211 ENCODE Processing Pipeline 0457be4dfc44cdc4dccdf0556f3d019e https://www.encodeproject.org/files/ENCFF876EHZ/@@download/ENCFF876EHZ.bed.gz hg19 released borderline replicate concordance, mild to moderate bottlenecking ENCFF508CQR bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB158FXS DNA False 2016-09-27 ENCODE 1, 2 ENCFF051LWI, ENCFF308WNU, ENCFF581ZJL, ENCFF903MUJ 6202139 ENCODE Processing Pipeline ab27d8f45f974a913458d063b70a81cb https://www.encodeproject.org/files/ENCFF508CQR/@@download/ENCFF508CQR.bed.gz hg19 released borderline replicate concordance, low read depth missing control alignments ENCFF415ATH bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB158FXS DNA False 2016-09-27 ENCODE 1 ENCFF581ZJL, ENCFF903MUJ 5480434 ENCODE Processing Pipeline e663731b6cbec67cbebc13b84865e7a6 https://www.encodeproject.org/files/ENCFF415ATH/@@download/ENCFF415ATH.bed.gz hg19 released borderline replicate concordance, low read depth missing control alignments ENCFF397VOW bed narrowPeak peaks ENCSR079WHK ChIP-seq EFO:0002067 K562 cell line Homo sapiens MCM5-human ENCAB158FXS DNA False 2016-09-27 ENCODE 2 ENCFF051LWI, ENCFF308WNU 5396166 ENCODE Processing Pipeline 2fb2202576ba8df823a78813e0b45aba https://www.encodeproject.org/files/ENCFF397VOW/@@download/ENCFF397VOW.bed.gz hg19 released borderline replicate concordance, low read depth missing control alignments ENCFF255VCC bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB538ZMX DNA False 2017-05-17 ENCODE 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV 6398990 ENCODE Processing Pipeline 7344145cc93f4211f897581fcc9e10b5 https://www.encodeproject.org/files/ENCFF255VCC/@@download/ENCFF255VCC.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF637AOG bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB538ZMX DNA False 2017-05-17 ENCODE 1, 2 ENCFF262CJE, ENCFF317UJS, ENCFF506DFV, ENCFF798EEI 7098911 ENCODE Processing Pipeline caba2045016146600bf29e2bf717b043 https://www.encodeproject.org/files/ENCFF637AOG/@@download/ENCFF637AOG.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF782FAJ bed narrowPeak peaks ENCSR024CNP ChIP-seq EFO:0002067 K562 cell line Homo sapiens EGR1-human ENCAB538ZMX DNA False 2017-05-17 ENCODE 1 ENCFF262CJE, ENCFF506DFV, ENCFF798EEI 6792822 ENCODE Processing Pipeline 7f92a2c22d03cbc0d8ef279014a1724a https://www.encodeproject.org/files/ENCFF782FAJ/@@download/ENCFF782FAJ.bed.gz hg19 released low read depth, mild to moderate bottlenecking ENCFF865KAB bed narrowPeak peaks ENCSR195QFV ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-ZNF3-human ENCAB697XQW DNA False 2018-02-20 ENCODE 1 ENCFF041VKO, ENCFF061QOJ 6894302 ENCODE Processing Pipeline d6cd2c4f3aa910ba10c39033be8de54f https://www.encodeproject.org/files/ENCFF865KAB/@@download/ENCFF865KAB.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF103IWV bed narrowPeak peaks ENCSR713IFY ChIP-seq EFO:0002067 K562 cell line Homo sapiens FLAG-ZNF146-human ENCAB697XQW DNA False 2018-03-16 ENCODE 1 ENCFF061QOJ, ENCFF657MSB 5575003 ENCODE Processing Pipeline 4121a132e5bc5312012440d570322a3a https://www.encodeproject.org/files/ENCFF103IWV/@@download/ENCFF103IWV.bed.gz hg19 released missing genetic modification characterization characterization(s) pending review, experiment not submitted to GEO unreplicated experiment ENCFF368IHM bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB057RGG DNA SDS formaldehyde False 2017-02-27 ENCODE 1 ENCFF216EBS, ENCFF508DBG 5654023 ENCODE Processing Pipeline 41b2340859901069610fca97bbe1ca32 https://www.encodeproject.org/files/ENCFF368IHM/@@download/ENCFF368IHM.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF700XRO bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB057RGG DNA SDS formaldehyde False 2017-02-27 ENCODE 1, 2 ENCFF165COO, ENCFF216EBS, ENCFF508DBG, ENCFF572OMD 6822248 ENCODE Processing Pipeline c5f08ba342a082ecae3186d5cf41e737 https://www.encodeproject.org/files/ENCFF700XRO/@@download/ENCFF700XRO.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length ENCFF958WJN bed narrowPeak peaks ENCSR429XTR ChIP-seq EFO:0002067 K562 cell line Homo sapiens TARDBP-human ENCAB057RGG DNA SDS formaldehyde False 2017-02-27 ENCODE 2 ENCFF165COO, ENCFF572OMD 5481752 ENCODE Processing Pipeline 5e55b4a47a1adfdffea227c9ea0cf556 https://www.encodeproject.org/files/ENCFF958WJN/@@download/ENCFF958WJN.bed.gz hg19 released low read depth, mild to moderate bottlenecking, low read length