python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/makewigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.5p.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.5p.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.5p.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.5p.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.5p.wig -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.5p.plus.wig -stranded + -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.5p.plus.wig -stranded + -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.5p.plus.wig -stranded + -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.5p.plus.wig -stranded + -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.5p.plus.wig -stranded + -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.5p.minus.wig -stranded - -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.5p.minus.wig -stranded - -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.5p.minus.wig -stranded - -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.5p.minus.wig -stranded - -notitle -uniqueBAM -RPM
python /oak/stanford/groups/akundaje/marinovg/code/make5primeWigglefromBAM-NH.py ==== R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.5p.minus.wig -stranded - -notitle -uniqueBAM -RPM