module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --rank p.value --soft-idr-threshold 0.05 --plot --input-file-type narrowPeak --output-file R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --rank p.value --soft-idr-threshold 0.05 --plot --input-file-type narrowPeak --output-file R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --rank p.value --soft-idr-threshold 0.05 --plot --input-file-type narrowPeak --output-file R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --rank p.value --soft-idr-threshold 0.05 --plot --input-file-type narrowPeak --output-file R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.IDR
module load python/3.6.1; /oak/stanford/groups/akundaje/marinovg/programs/idr-2.0.4/bin/idr --samples R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.pseudoRep2.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.gz --rank p.value --soft-idr-threshold 0.05 --plot --input-file-type narrowPeak --output-file R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.pseudoRep1.MACS-2.1.0.IDR