Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.1x36mers.mm9.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.1x36mers.mm9.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.1x36mers.mm9.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.1x36mers.mm9.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.1x36mers.mm9.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.1x36mers.mm9.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.1x36mers.mm9.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.1x36mers.mm9.unique.QC
Rscript /oak/stanford/groups/akundaje/marinovg/code/spp/spp_package/run_spp.R -c=R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.1x36mers.mm9.unique.bam -p=8 -savp -rf -s=-0:2:400 -out=R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.1x36mers.mm9.unique.QC