python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.1x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.1x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.1x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.1x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.1x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.1x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.1x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.1x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.1x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.1x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-100U_Mnase-GSM2916417.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-1.55U_Mnase-GSM2916414.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-_25U_Mnase-GSM2916416.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-6.25U_Mnase-GSM2916415.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers.mm9.unique.bam SAMstats-R1_mESCs-CTCF-SLIM-ChIP-Mixed_Mnase-GSM2916418.2x36mers -bam /oak/stanford/groups/akundaje/marinovg/genomes/mm9/mm9.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired